Query 015651
Match_columns 403
No_of_seqs 234 out of 879
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1.9E-64 6.7E-69 512.6 22.5 278 52-347 80-387 (391)
2 3bcv_A Putative glycosyltransf 84.0 7.8 0.00027 34.1 10.7 100 55-173 4-105 (240)
3 4hg6_A Cellulose synthase subu 76.0 27 0.00091 37.8 13.4 116 52-185 136-273 (802)
4 1qg8_A Protein (spore coat pol 75.5 14 0.00048 32.8 9.5 109 56-176 1-115 (255)
5 4fix_A UDP-galactofuranosyl tr 73.1 10 0.00035 40.3 9.0 112 52-175 176-294 (657)
6 2d7i_A Polypeptide N-acetylgal 70.9 18 0.00062 37.3 10.2 109 53-176 109-223 (570)
7 2z86_A Chondroitin synthase; G 70.5 26 0.00087 36.1 11.2 105 55-175 92-200 (625)
8 1xhb_A Polypeptide N-acetylgal 63.0 36 0.0012 33.7 10.2 109 53-176 26-141 (472)
9 2z86_A Chondroitin synthase; G 61.7 42 0.0014 34.5 10.8 100 54-172 373-474 (625)
10 2ffu_A Ppgalnact-2, polypeptid 55.1 47 0.0016 33.2 9.5 101 53-174 63-168 (501)
11 1ezi_A CMP-N-acetylneuraminic 44.2 96 0.0033 27.1 8.9 91 70-177 30-122 (228)
12 2fy7_A Beta-1,4-galactosyltran 31.4 2.7E+02 0.0091 25.9 10.1 78 54-166 63-145 (287)
13 1qwj_A Cytidine monophospho-N- 31.1 1.2E+02 0.0041 26.6 7.3 24 151-175 95-118 (229)
14 3iek_A Ribonuclease TTHA0252; 25.8 18 0.00063 36.0 0.8 46 54-103 367-414 (431)
15 1iio_A Conserved hypothetical 23.1 23 0.00078 27.6 0.7 16 159-174 22-37 (84)
16 3ckj_A Putative uncharacterize 20.6 3.7E+02 0.013 24.9 8.9 116 54-184 46-166 (329)
17 2i7t_A Cleavage and polyadenyl 20.4 25 0.00085 35.1 0.5 40 62-103 393-432 (459)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1.9e-64 Score=512.64 Aligned_cols=278 Identities=22% Similarity=0.336 Sum_probs=238.8
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
++.+++|||+|++|+ |+++++||++++|||+|.||||+|+||+..++..+... ..+++||+|++++..|.|||
T Consensus 80 ~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WGg 152 (391)
T 2gak_A 80 EEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYAS 152 (391)
T ss_dssp HHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTTS
T ss_pred cccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccCC
Confidence 345699999999998 99999999999999999999999999999877776542 34799999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCcccccccc--ccccCCCcc
Q 015651 132 PTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAK--PIIIDPGLY 208 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~--~~i~dpgly 208 (403)
+|||+||++||+.||+.+. |||||||||+||||+|+++|+++|+.+ +++|||++....+|++. |++ +...+++++
T Consensus 153 ~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~ 230 (391)
T 2gak_A 153 WTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT 230 (391)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE
T ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee
Confidence 9999999999999999875 999999999999999999999999875 67999999988888763 432 333343322
Q ss_pred ccCCcceeeeeecCCCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHhcCCCCCCCchhhhHhhcC--------
Q 015651 209 SLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNS-------- 280 (403)
Q Consensus 209 ~~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf~~~~~pdE~fFqTvl~Ns-------- 280 (403)
.+..++|.+|.++++++|||||+|||+||+||++ |++++.+++||+++++|||+||||++.|+
T Consensus 231 -------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~ 301 (391)
T 2gak_A 231 -------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPS 301 (391)
T ss_dssp -------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCS
T ss_pred -------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCcccc
Confidence 3456788899999999999999999999999998 66688899999999999999999998764
Q ss_pred -CCCCcccccCceeeEecCCCCC------CCCC----------CCCHHHHHHHhcCCCcEEeccCC--ChHHHHHHHHHH
Q 015651 281 -EDYKNTTANHDLHYITWDTPPK------QHPR----------SLGLKDFRRMVLSSRPFARKFKQ--NSPVLDKIDRDL 341 (403)
Q Consensus 281 -~~f~~t~vn~nLRyi~W~~~~~------~~P~----------~L~~~D~~~l~~S~a~FARKF~~--d~~lld~Id~~l 341 (403)
..|+++++|+++|||+|+++.+ .||. +|+.+|++.|.+|+++|||||++ |++|++|||+.|
T Consensus 302 ~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 302 SNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp SGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred ccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHH
Confidence 2345667899999999985221 2444 89999999999999999999997 789999999999
Q ss_pred hcccCC
Q 015651 342 LKRHRR 347 (403)
Q Consensus 342 l~r~~~ 347 (403)
.+|...
T Consensus 382 ~~r~~~ 387 (391)
T 2gak_A 382 RRKALE 387 (391)
T ss_dssp HHHHHC
T ss_pred hhhhhc
Confidence 888654
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=84.02 E-value=7.8 Score=34.11 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCc
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 132 (403)
.|++..+|.+++ ..+.|.+.|+.|... .+.=+|=+|-.+++...+.++++.+ ..++|+++... -.|.
T Consensus 4 ~p~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~------~~~~i~~i~~~----n~G~ 72 (240)
T 3bcv_A 4 IPKVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA------QYPNIKVIHKK----NAGL 72 (240)
T ss_dssp CCSEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH------HCSSEEEEECC----CCCH
T ss_pred CCcEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh------hCCCEEEEECC----CCCh
Confidence 468999999998 578999999998632 1333556777666655555554432 46789888532 2343
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHH
Q 015651 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEA 173 (403)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~ 173 (403)
..|-=.++ +...=||++.|.+.|++ ..+.|...
T Consensus 73 --~~a~N~g~----~~a~g~~i~~lD~Dd~~--~~~~l~~l 105 (240)
T 3bcv_A 73 --GMACNSGL----DVATGEYVAFCDSDDYV--DSDMYMTM 105 (240)
T ss_dssp --HHHHHHHH----HHCCSSEEEECCTTCCC--CTTHHHHH
T ss_pred --HHHHHHHH----HHcCCCEEEEECCCCcC--CHHHHHHH
Confidence 23322333 33346999999999986 34444443
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=76.03 E-value=27 Score=37.82 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=64.8
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHc---CCCC-EEEEEEcCCCCHHH---------------HHHHHHHhhccCcc
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALY---HPGN-HYLIHMDREAPEKE---------------QREIAEFVANEPVF 112 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n-~y~IHlD~ka~~~~---------------~~~l~~~v~~~~~~ 112 (403)
++..|++..+|-+++.+.+.++++|+++. .|+. .-+|=+|-.+++.. +..++++.
T Consensus 136 ~~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~------ 209 (802)
T 4hg6_A 136 PEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLC------ 209 (802)
T ss_dssp TTTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHH------
T ss_pred ccCCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHH------
Confidence 34567999999999855555688888883 2432 33455666554433 22333322
Q ss_pred ccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHH---HHHccCCCCcceEe
Q 015651 113 RMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLI---EAFSDLPRDLNFIQ 185 (403)
Q Consensus 113 ~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~---~~fs~~~~~~nFIe 185 (403)
...++.++.... +++|- . .++..+++...-||++.+.+.|.+ +.+.+. ..|.+ +.+...+.
T Consensus 210 -~~~~v~~i~~~~--~~~GK--a----~alN~gl~~a~gd~Il~lDaD~~~--~pd~L~~lv~~~~~-dp~v~~V~ 273 (802)
T 4hg6_A 210 -RELGVVYSTRER--NEHAK--A----GNMSAALERLKGELVVVFDADHVP--SRDFLARTVGYFVE-DPDLFLVQ 273 (802)
T ss_dssp -HHHTCEEEECSS--CCSHH--H----HHHHHHHHHCCCSEEEECCTTEEE--CTTHHHHHHHHHHH-SSSCCEEE
T ss_pred -HhcCcEEEEecC--CCCcc--h----HHHHHHHHhcCCCEEEEECCCCCc--ChHHHHHHHHHHhc-CCCeEEEe
Confidence 223555553221 22222 1 134445555568999999999988 444444 44432 33445554
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=75.46 E-value=14 Score=32.79 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=64.4
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcce---eeec
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNL---VTYR 130 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~---V~wg 130 (403)
|++..+|.+++ ..+.|.++|+.|... .+.=+|=+|-.+++...+.++++. ..++|.++..... ..+.
T Consensus 1 p~vSViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~-------~~~~i~~i~~~~~~~~~~~~ 72 (255)
T 1qg8_A 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERTE 72 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHHS
T ss_pred CeEEEEEEcCC-CHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHh-------hcCCEEEEeccccccccccc
Confidence 57889999998 578999999998632 133456677777766544443221 2578888754310 0001
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHcc
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSD 176 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs~ 176 (403)
..+...|--.+++. ..-||++.|.+.|++... .+.+...+.+
T Consensus 73 n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~ 115 (255)
T 1qg8_A 73 KTRYAALINQAIEM----AEGEYITYATDDNIYMPDRLLKMVRELDT 115 (255)
T ss_dssp SCHHHHHHHHHHHH----CCCSEEEEEETTEEECTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH----cCCCEEEEeCCCCccChHHHHHHHHHHHh
Confidence 23333443333333 346999999999997432 2344445543
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=73.13 E-value=10 Score=40.26 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=70.9
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEcCCCCHH-HHHHHHHHhhccCccccccceEEeCCcc
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALYHP-----GNHYLIHMDREAPEK-EQREIAEFVANEPVFRMVNNVYIVGKPN 125 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLyhp-----~n~y~IHlD~ka~~~-~~~~l~~~v~~~~~~~~~~NV~vv~~~~ 125 (403)
++.+|+++.+|.+++ ..+.+.++|+.|... .+.=+|=||-.+++. ....+.+.++ ...++|.++...
T Consensus 176 ~~~~pkVSVVIptYN-~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~-----~~~~~I~vI~~~- 248 (657)
T 4fix_A 176 APGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA-----RLGSRLSIHDQP- 248 (657)
T ss_dssp CCSCCCEEEECCBSS-CHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH-----HHGGGEEEEECC-
T ss_pred CCCCCeEEEEEEecC-CHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH-----hcCCCEEEEECC-
Confidence 455689999999998 689999999999752 232467888877542 1112222221 135789988643
Q ss_pred eeeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceecc-chhhHHHHHc
Q 015651 126 LVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLV-TQDDLIEAFS 175 (403)
Q Consensus 126 ~V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~-t~~~i~~~fs 175 (403)
+- |+ -.|-=.+++.+......||+++|...+.+-. ..+.+++++.
T Consensus 249 --N~-G~--a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 249 --NL-GG--SGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp --CC-HH--HHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred --CC-CH--HHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 22 22 2344456777766546899999998888652 1234445554
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=70.95 E-value=18 Score=37.30 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=69.8
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHcC--CCC--EEEEEEcCCCCHHH-HHHHHHHhhccCccccccceEEeCCccee
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLALYH--PGN--HYLIHMDREAPEKE-QREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aLyh--p~n--~y~IHlD~ka~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 127 (403)
+..|++..+|.+++...+.|.+.|+.+.. +.+ .=+|=||-.+++.. .+.++++++ .+++|+++....
T Consensus 109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~------~~~~v~vi~~~~-- 180 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA------LFPSVRILRTKK-- 180 (570)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT------TSTTEEEEECSS--
T ss_pred CCCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH------hCCeEEEEECCC--
Confidence 34688999999998434889999888852 223 13566777776665 566665543 457898875321
Q ss_pred eecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHcc
Q 015651 128 TYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSD 176 (403)
Q Consensus 128 ~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs~ 176 (403)
......|--.+++.+ .-||++.|.+.|.+-.. .+.+++.+..
T Consensus 181 ---n~G~~~A~N~G~~~A----~gd~i~fLD~D~~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 181 ---REGLIRTRMLGASVA----TGDVITFLDSHCEANVNWLPPLLDRIAR 223 (570)
T ss_dssp ---CCCHHHHHHHHHHHC----CSSEEEECCSSEEECTTCSHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhc----CCCEEEEEcCCccccccHHHHHHHHHHh
Confidence 234566666666554 35999999999988321 2345555543
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=70.47 E-value=26 Score=36.15 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLALYHP---GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aLyhp---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
.|++..+|.+++ ..+.+.++|.+|... .+.=+|=+|-.+++...+.++++ ....+|.++... -.|
T Consensus 92 ~p~vsviIp~~n-~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~-------~~~~~i~~i~~~----~~~ 159 (625)
T 2z86_A 92 IDGLSIVIPTYN-RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREF-------ESLLNIKYVRQK----DYG 159 (625)
T ss_dssp CCCEEEEEEESS-CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTT-------TTTSCEEEEEEC----CCS
T ss_pred CCcEEEEEecCC-cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHh-------hhcCCeEEEEeC----CCC
Confidence 378999999998 789999999999632 23334555655555444333321 123567776422 234
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHc
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFS 175 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs 175 (403)
.+...|--.+++. ..-||++.|.+.+.+-.. .+.+...|.
T Consensus 160 ~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 160 YQLCAVRNLGLRA----AKYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp CCHHHHHHHHHHH----CCSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred cchhHHHHHHHHh----CCcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 4444444444443 356999999999998322 233444444
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=62.96 E-value=36 Score=33.70 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=67.3
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHcC--CCC--EEEEEEcCCCCH-HHHHHHHHHhhccCcccccc-ceEEeCCcce
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLALYH--PGN--HYLIHMDREAPE-KEQREIAEFVANEPVFRMVN-NVYIVGKPNL 126 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aLyh--p~n--~y~IHlD~ka~~-~~~~~l~~~v~~~~~~~~~~-NV~vv~~~~~ 126 (403)
+..|++..+|.+|+...+.|.++|+.|.. +.+ .=+|=||-.+++ ...+.++++++ .++ +|+++.....
T Consensus 26 ~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~------~~~~~v~vi~~~~n 99 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK------KLKVPVHVIRMEQR 99 (472)
T ss_dssp SCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH------SSSSCEEEEECSSC
T ss_pred cCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH------HCCCcEEEEECCCC
Confidence 45688999999998433999999998863 223 235667776765 34555555443 356 7888853321
Q ss_pred eeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHcc
Q 015651 127 VTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSD 176 (403)
Q Consensus 127 V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs~ 176 (403)
.....|--.+++. ..-||++.|.+.|.+-.. .+.+++.+.+
T Consensus 100 -----~G~~~a~N~g~~~----A~gd~i~flD~D~~~~p~~L~~ll~~~~~ 141 (472)
T 1xhb_A 100 -----SGLIRARLKGAAV----SRGQVITFLDAHCECTAGWLEPLLARIKH 141 (472)
T ss_dssp -----CCHHHHHHHHHHH----CCSSEEEEEESSEEECTTCHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHh----ccCCeEEEECCCeEeCccHHHHHHHHHHh
Confidence 2244454444444 346999999999885322 2344455543
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=61.72 E-value=42 Score=34.46 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
..|+++.+|.+++ ..+.+.+.|+.+... .+.=+|=+|-.+++...+.++++.+ ..++|.++... -+|
T Consensus 373 ~~~~vsiii~~yn-~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~------~~~~i~~~~~~----n~G 441 (625)
T 2z86_A 373 RVPLVSIYIPAYN-CSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYA------NHPRVRFISQK----NKG 441 (625)
T ss_dssp SSCSEEEEEEESS-CTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHT------TCTTEEEEEEC----CCC
T ss_pred cCCeEEEEEeCCC-CHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHh------hCCcEEEEeCC----CCC
Confidence 3578999999998 588999999988531 2333455665565554444544332 45788887422 234
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHH
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~ 172 (403)
...|.-.+++ ...-||++.|.+.|++ ..+.|..
T Consensus 442 --~~~a~n~g~~----~a~g~~i~~ld~D~~~--~~~~l~~ 474 (625)
T 2z86_A 442 --IGSASNTAVR----LCRGFYIGQLDSDDFL--EPDAVEL 474 (625)
T ss_dssp --HHHHHHHHHH----HCCSSEEEECCTTCEE--CTTHHHH
T ss_pred --HHHHHHHHHH----hcCCCEEEEECCCccc--ChhHHHH
Confidence 3333333333 3346999999999986 4444443
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=55.12 E-value=47 Score=33.25 Aligned_cols=101 Identities=9% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCCCeEEEEEEecCCCHH-HHHHHHHHHcC--CCC--EEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCccee
Q 015651 53 SYPVTFAYLLSASKGDTI-KLKRALLALYH--PGN--HYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~-~l~rLl~aLyh--p~n--~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 127 (403)
...|++..+|.+|+ ..+ .|.+.|+.+.. +.+ .=+|=||-.+++....+ .+ ...++|+++....
T Consensus 63 ~~~p~vSVIIp~yN-~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~---~~------~~~~~v~vi~~~~-- 130 (501)
T 2ffu_A 63 VDLPATSVVITFHN-EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA---LL------GKIEKVRVLRNDR-- 130 (501)
T ss_dssp SSCCCEEEEEEESS-CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHH---GG------GGBTTEEEEECSS--
T ss_pred cCCCCEEEEEEeCc-CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHH---HH------hcCCCEEEEECCC--
Confidence 45678999999998 555 88888888752 222 23566776665543222 11 2578898875321
Q ss_pred eecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 128 TYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 128 ~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
......|--.+++.+ .-||++.|.+.|.+ +.+.|...+
T Consensus 131 ---n~G~~~A~N~G~~~A----~gd~i~flD~D~~~--~p~~L~~ll 168 (501)
T 2ffu_A 131 ---REGLMRSRVRGADAA----QAKVLTFLDSHCEC--NEHWLEPLL 168 (501)
T ss_dssp ---CCHHHHHHHHHHHHC----CSSEEEECCSSEEE--CTTCHHHHH
T ss_pred ---CcCHHHHHHHHHHhc----CCCEEEEECCCccc--CccHHHHHH
Confidence 233555555555543 46999999998876 344444433
No 11
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=44.22 E-value=96 Score=27.08 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcC-C-CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHh
Q 015651 70 IKLKRALLALYH-P-GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLR 147 (403)
Q Consensus 70 ~~l~rLl~aLyh-p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 147 (403)
..+.+.++++.. + -..++|-.+. .. ++++++ .+ ++.++........+|.++..+..++++.+ .
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~---~~----i~~~~~------~~-~~~~~~~~~~~~~~~~g~~~sv~~~l~~~-~ 94 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDG---GL----IAEEAK------NF-GVEVVLRPAELASDTASSISGVIHALETI-G 94 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESC---HH----HHHHHH------HT-TCEEEECCC------CHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCC---HH----HHHHHH------Hc-CCEEEeCchHHcCCCCChHHHHHHHHHHh-C
Confidence 567777777752 3 2455666652 11 222221 12 23433333334457778888888877766 2
Q ss_pred CCCCcEEEeccCCceeccchhhHHHHHccC
Q 015651 148 CCKWDWFINLSASDYPLVTQDDLIEAFSDL 177 (403)
Q Consensus 148 ~~~wdyfi~LSgsDyPL~t~~~i~~~fs~~ 177 (403)
...|+++.+. .|.|+.+.+.|.+.+...
T Consensus 95 -~~~d~vlv~~-~D~P~~~~~~i~~l~~~~ 122 (228)
T 1ezi_A 95 -SNSGTVTLLQ-PTSPLRTGAHIREAFSLF 122 (228)
T ss_dssp -CCSEEEEECC-TTCTTCCHHHHHHHHTTC
T ss_pred -CCCCEEEEEc-CCCCcCCHHHHHHHHHHH
Confidence 2367776654 699999999998887643
No 12
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=31.42 E-value=2.7e+02 Score=25.86 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHcC----CCCEE-EEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceee
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALYH----PGNHY-LIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLyh----p~n~y-~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 128 (403)
+.++++.+|.+++ ..+.|.++|+.|.. ....| +|=||-..+
T Consensus 63 ~~~~VSIIIP~yN-~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d--------------------------------- 108 (287)
T 2fy7_A 63 SPHKVAIIIPFRN-RQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD--------------------------------- 108 (287)
T ss_dssp CSCEEEEEEEESS-CHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS---------------------------------
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCC---------------------------------
Confidence 3579999999998 79999999998861 11111 122222110
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc
Q 015651 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT 166 (403)
Q Consensus 129 wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t 166 (403)
+++....+-=.++..+++....||++.|.+.+.|...
T Consensus 109 -~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 109 -TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp -SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred -CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 1222222222244455666679999999999998776
No 13
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=31.10 E-value=1.2e+02 Score=26.63 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=18.6
Q ss_pred CcEEEeccCCceeccchhhHHHHHc
Q 015651 151 WDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 151 wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
.|+++.+. .|-|+.+.+.|.+.+.
T Consensus 95 ~d~vlv~~-~D~Pli~~~~i~~l~~ 118 (229)
T 1qwj_A 95 VDIVGNIQ-ATSPCLHPTDLQKVAE 118 (229)
T ss_dssp CSEEEEEC-TTCTTCCHHHHHHHHH
T ss_pred CCEEEEec-CCCCcCCHHHHHHHHH
Confidence 68887775 5899998888777654
No 14
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=25.85 E-value=18 Score=35.98 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCCeEEEE--EEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHH
Q 015651 54 YPVTFAYL--LSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIA 103 (403)
Q Consensus 54 ~~~kiAYL--I~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~ 103 (403)
-.+++.++ .+||. |..+|.++++.+. +.++||=|.++....++.|+
T Consensus 367 v~a~v~~~~~~saHa-d~~~l~~~~~~~~---~v~lvHge~~~~~~l~~~l~ 414 (431)
T 3iek_A 367 LRASVHTLGGFSGHA-GQDELLDWLQGEP---RVVLVHGEEEKLLALGKLLA 414 (431)
T ss_dssp CCSEEEECGGGCSSC-CHHHHHHHHTTCS---EEEEESSCHHHHHHHHHHHH
T ss_pred EEEEEEEECCccccC-CHHHHHHHHHhCC---eEEEECCCHHHHHHHHHHHH
Confidence 44678887 89999 9999999999763 79999988776666555554
No 15
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=23.14 E-value=23 Score=27.65 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=15.0
Q ss_pred CCceeccchhhHHHHH
Q 015651 159 ASDYPLVTQDDLIEAF 174 (403)
Q Consensus 159 gsDyPL~t~~~i~~~f 174 (403)
+.+||++|+.||...|
T Consensus 22 ~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 22 GADFPINSPEELMAAL 37 (84)
T ss_dssp TSSSTTBHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHhC
Confidence 7899999999999987
No 16
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=20.59 E-value=3.7e+02 Score=24.86 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeec
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 130 (403)
..|++..+|-+++ ..+.+.++|+.|.. +...=+|=||-.+++...+.++++.. ....++.++.. . -.-.
T Consensus 46 ~~~~vSViIp~yN-~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-----~~~~~~~~~~~-~-~~n~ 117 (329)
T 3ckj_A 46 AGRTISVVLPALD-EEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-----RVVSREQALPE-V-PIRP 117 (329)
T ss_dssp TTCCEEEEEEESS-CTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-----EEEEHHHHCTT-S-CCCC
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-----hhccceeeecc-C-CCCC
Confidence 4588999999998 67889999888863 33223445777676654443332110 00122222210 0 1123
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceec--cchhhHHHHHccCCCCcceE
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPL--VTQDDLIEAFSDLPRDLNFI 184 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL--~t~~~i~~~fs~~~~~~nFI 184 (403)
| ...|.-.+++. ..-||++.|.+.|..+ .....+.+.+.. +.+...+
T Consensus 118 G--~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~-~~~~~~v 166 (329)
T 3ckj_A 118 G--KGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLT-GDGVHLV 166 (329)
T ss_dssp S--HHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHS-CSSCCEE
T ss_pred C--HHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHh-CCCccEE
Confidence 3 33444444433 3459999999999833 334566666443 2334444
No 17
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=20.37 E-value=25 Score=35.08 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=31.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHH
Q 015651 62 LSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIA 103 (403)
Q Consensus 62 I~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~ 103 (403)
+++|. |..+|.++++.+. |++.|+||=+..+-...++.|+
T Consensus 393 ~S~Ha-d~~~l~~~i~~~~-p~~v~~vHGe~~~~~~~~~~l~ 432 (459)
T 2i7t_A 393 FSAHT-DYQQTSEFIRALK-PPHVILVHGEQNEMARLKAALI 432 (459)
T ss_dssp CSCCC-CHHHHHHHHHHHC-CSEEEEESSCHHHHHHHHHHHH
T ss_pred ecccC-CHHHHHHHHHhcC-CCeEEEeCCCHHHHHHHHHHHH
Confidence 48998 9999999999998 9999999976654444444444
Done!