Citrus Sinensis ID: 015652

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MEGKTVNPKPDAEEIGAPASSRRIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHccccEEEEEEEEEEEEEEEEcccEEEEEEccccccccccHHHHcccEEEEEEc
ccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHcccccccccccEEEEcccccccccEEEccccccccccccHHHcccccccccccccHcccccccccccccccccccccHHHHHcccccccccccccccccccEcccHHHHHHcccccccccccccccccHHHccccccEcccccccHHccccccccHHHcccEEccccccEEcHHHccEEEcccHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccEEEEcccccccEEHHHcccHHHHHHcccccccccccccHHHHccccccEEEEEEEccEEEEEEccccEEEEEccccccccccHHHEcccccccEEc
megktvnpkpdaeeigapassrripssppddmglensrascnSMSAVEFEsqrmvgskeydtelptqfneengkkrelqpssprkgkyffydsphyedtgvwipvsvppmldskddewargfhsdggyfpevdmgwsqylkedkelTMWDVVVEMLLAARGKVHalakgdihgcnfswMSSHLLEQAWQEMAQTLTEAnfgnvselldaepprwladssasacmlcgvrfhpimcsrhhcrfcggifcgecskgrsllpvkfrvsdpqrvcDVCCVRlqsvqpylmnqvshaaqlptrdltdlstlrswvnfpwgqsmEYEIYKAANtirgyskvgflkpeksipDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIArrndgswsppsaissfgmgwgaqvk
megktvnpkpdaeeigapassrripssppDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTElptqfneengkkrelqpssprkGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIArrndgswsppsaissfgmgwgaqvk
MEGKTVNPKPDAEEIGapassrripssppDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
**************************************************************************************KYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRND*********************
********************************************************************************************************************************************************************A***GDIHGCNFSW***********************************WLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYL**************LTDLSTLRSWVNFPWGQSMEYEIYKAANTI*GY**********SIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
***************************PPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFN************SPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
*************************************************************TELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQ*****KELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEAN*GNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAA*********LSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
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MEGKTVNPKPDAEEIGAPASSRRIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
B0WAQ0907 Lateral signaling target N/A no 0.161 0.071 0.492 4e-12
Q17AN2912 Lateral signaling target N/A no 0.161 0.071 0.492 5e-12
Q9URW6 430 SH3 domain-containing pro yes no 0.210 0.197 0.385 7e-11
Q7QAJ21161 Lateral signaling target no no 0.161 0.055 0.477 8e-11
B4PRU6984 Lateral signaling target N/A no 0.161 0.066 0.462 3e-10
B3P851981 Lateral signaling target N/A no 0.161 0.066 0.462 3e-10
Q9VB70989 Lateral signaling target yes no 0.161 0.065 0.462 4e-10
B4IC49975 Lateral signaling target N/A no 0.161 0.066 0.462 4e-10
B4K9821051 Lateral signaling target N/A no 0.161 0.061 0.462 4e-10
B4M1401052 Lateral signaling target N/A no 0.161 0.061 0.462 5e-10
>sp|B0WAQ0|LST2_CULQU Lateral signaling target protein 2 homolog OS=Culex quinquefasciatus GN=CPIJ004116 PE=3 SV=1 Back     alignment and function desciption
 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRV 270
           PPRW+ D  A  CM C   F P    RHHCR CGG+FCG CS   + LP K+ ++   RV
Sbjct: 839 PPRWIPDGDAPRCMACASSFTPFR-RRHHCRNCGGVFCGGCSSASAPLP-KYGLTKAVRV 896

Query: 271 CDVCCVR 277
           C  C VR
Sbjct: 897 CRECFVR 903
Negative regulator of epidermal growth factor receptor (EGFR) signaling.
Culex quinquefasciatus (taxid: 7176)
>sp|Q17AN2|LST2_AEDAE Lateral signaling target protein 2 homolog OS=Aedes aegypti GN=AAEL005241 PE=3 SV=1 Back     alignment and function description
>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1 Back     alignment and function description
>sp|Q7QAJ2|LST2_ANOGA Lateral signaling target protein 2 homolog OS=Anopheles gambiae GN=AGAP003678 PE=3 SV=6 Back     alignment and function description
>sp|B4PRU6|LST2_DROYA Lateral signaling target protein 2 homolog OS=Drosophila yakuba GN=GE10583 PE=3 SV=1 Back     alignment and function description
>sp|B3P851|LST2_DROER Lateral signaling target protein 2 homolog OS=Drosophila erecta GN=GG12136 PE=3 SV=1 Back     alignment and function description
>sp|Q9VB70|LST2_DROME Lateral signaling target protein 2 homolog OS=Drosophila melanogaster GN=CG6051 PE=1 SV=3 Back     alignment and function description
>sp|B4IC49|LST2_DROSE Lateral signaling target protein 2 homolog OS=Drosophila sechellia GN=GM10129 PE=3 SV=1 Back     alignment and function description
>sp|B4K982|LST2_DROMO Lateral signaling target protein 2 homolog OS=Drosophila mojavensis GN=GI24295 PE=3 SV=1 Back     alignment and function description
>sp|B4M140|LST2_DROVI Lateral signaling target protein 2 homolog OS=Drosophila virilis GN=GJ23073 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
255562532 524 zinc ion binding protein, putative [Rici 0.977 0.751 0.702 1e-165
356549190 540 PREDICTED: uncharacterized protein LOC10 0.992 0.740 0.677 1e-161
356555455 540 PREDICTED: uncharacterized protein LOC10 0.992 0.740 0.674 1e-160
225443708 525 PREDICTED: uncharacterized protein LOC10 0.992 0.761 0.686 1e-159
297740550 723 unnamed protein product [Vitis vinifera] 0.992 0.553 0.686 1e-158
224114605476 predicted protein [Populus trichocarpa] 0.863 0.731 0.742 1e-156
79355914 510 RING/FYVE/PHD zinc finger-containing pro 0.895 0.707 0.701 1e-152
79318859496 RING/FYVE/PHD zinc finger-containing pro 0.895 0.727 0.701 1e-152
297845902 510 zinc ion binding protein [Arabidopsis ly 0.861 0.680 0.717 1e-152
9972365469 Hypothetical protein [Arabidopsis thalia 0.895 0.769 0.701 1e-152
>gi|255562532|ref|XP_002522272.1| zinc ion binding protein, putative [Ricinus communis] gi|223538525|gb|EEF40130.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/404 (70%), Positives = 328/404 (81%), Gaps = 10/404 (2%)

Query: 1   MEGKTVNPKPDAE-EIGAPASSR--RIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGS 57
           MEG +VN K   E E+     S   R+  S PD+ GLE S    +S + V   S RM  S
Sbjct: 1   MEGNSVNFKSRVEDEVDGIGKSEKPRVSDSLPDNGGLECSMEYFSSAATVGLGSPRMTIS 60

Query: 58  KEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDE 117
            E        +   + +K+  + S    GKYFFYD P  E+TGVWIPVSVPPM DS  +E
Sbjct: 61  GE-------NYPRSDAEKKGTKTSQRNVGKYFFYDPPLSEETGVWIPVSVPPMSDSDHEE 113

Query: 118 WARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFS 177
           W RGFHS+GGYFPE DMGW+ Y +++KELTMWDV+ EMLLAARGKV A+A GDI+  +FS
Sbjct: 114 WNRGFHSNGGYFPEGDMGWNHYFEKEKELTMWDVIAEMLLAARGKVGAIASGDIYKGSFS 173

Query: 178 WMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSR 237
           W+SS+LLEQAW+EMAQTLTEA FG V+E+L+A+PP+WLADS+ASACMLCGVRFHPIMCSR
Sbjct: 174 WVSSNLLEQAWEEMAQTLTEATFGKVTEILEADPPKWLADSAASACMLCGVRFHPIMCSR 233

Query: 238 HHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPT 297
           HHCRFCGGIFCGECSKGRSLLPVKFR +DPQRVCDVCCVRL+SVQPYLM+QVS+AAQLPT
Sbjct: 234 HHCRFCGGIFCGECSKGRSLLPVKFRTADPQRVCDVCCVRLESVQPYLMDQVSNAAQLPT 293

Query: 298 RDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAI 357
            DLTDLSTLRSWVNFPWGQSMEYEIYKAANTI+GY+K   LKPEKSIPD ILR+AKGLAI
Sbjct: 294 HDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIQGYNKAVCLKPEKSIPDAILRKAKGLAI 353

Query: 358 LSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQ 401
           ++VAK+G+MVTYN+GTGLVI+RR DG WSPPSAISSFGMGWGAQ
Sbjct: 354 ITVAKIGMMVTYNVGTGLVISRREDGLWSPPSAISSFGMGWGAQ 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356549190|ref|XP_003542980.1| PREDICTED: uncharacterized protein LOC100813648 [Glycine max] Back     alignment and taxonomy information
>gi|356555455|ref|XP_003546047.1| PREDICTED: uncharacterized protein LOC100785341 [Glycine max] Back     alignment and taxonomy information
>gi|225443708|ref|XP_002266858.1| PREDICTED: uncharacterized protein LOC100241291 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740550|emb|CBI30732.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114605|ref|XP_002316808.1| predicted protein [Populus trichocarpa] gi|222859873|gb|EEE97420.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79355914|ref|NP_174273.3| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|25054840|gb|AAN71910.1| unknown protein [Arabidopsis thaliana] gi|332193010|gb|AEE31131.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79318859|ref|NP_001031110.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|332193011|gb|AEE31132.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845902|ref|XP_002890832.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297336674|gb|EFH67091.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9972365|gb|AAG10615.1|AC008030_15 Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2019362 510 AT1G29800 [Arabidopsis thalian 0.895 0.707 0.706 1.8e-142
TAIR|locus:2084716 485 AT3G43230 [Arabidopsis thalian 0.506 0.420 0.593 4.2e-67
UNIPROTKB|Q96HL8 342 SH3YL1 "SH3 domain-containing 0.230 0.271 0.425 7e-12
MGI|MGI:1346118 340 Sh3yl1 "Sh3 domain YSC-like 1" 0.230 0.273 0.414 1.2e-11
RGD|1306440 340 Sh3yl1 "SH3 domain containing, 0.230 0.273 0.414 1.2e-11
UNIPROTKB|F1NNR2 294 SH3YL1 "Uncharacterized protei 0.228 0.312 0.408 1.8e-11
UNIPROTKB|F1Q0G4 343 SH3YL1 "Uncharacterized protei 0.230 0.271 0.414 2.7e-11
SGD|S000001058 468 YSC84 "Actin-binding protein" 0.230 0.198 0.393 1.3e-10
UNIPROTKB|Q9H8W4249 PLEKHF2 "Pleckstrin homology d 0.213 0.345 0.389 2.1e-10
ASPGD|ASPL0000012058 410 AN4168 [Emericella nidulans (t 0.228 0.224 0.410 3.6e-10
TAIR|locus:2019362 AT1G29800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 258/365 (70%), Positives = 302/365 (82%)

Query:    38 RASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYE 97
             RAS    +A    SQ +  ++E D+     F EE+  KR L+P   + GKYFFYD+P  E
Sbjct:     9 RASHGDSNAGNVVSQSIENTREEDSGSCEGFVEES--KR-LEPEQQKHGKYFFYDTPLSE 65

Query:    98 DTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLL 157
             +TGVWIPVSVPPML+   +EW+RG   +GGYFPE DMGW Q   EDKELTMWDV+V+MLL
Sbjct:    66 ETGVWIPVSVPPMLEPDHEEWSRGLSFNGGYFPEGDMGWDQIFDEDKELTMWDVIVDMLL 125

Query:   158 AARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLAD 217
             AARGK  AL+ G++  C  +++S HLLEQAWQ+MA TLTEANFGN  E+L+ EPP+WL D
Sbjct:   126 AARGKASALSSGNLERCGINFLSGHLLEQAWQDMAHTLTEANFGNAREILETEPPKWLPD 185

Query:   218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277
             S+ASACMLC VRFHPIMCSRHHCR+CGGIFC +CSKG+SL+PVKFRVSDPQRVCDVC VR
Sbjct:   186 SAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSLVPVKFRVSDPQRVCDVCFVR 245

Query:   278 LQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGY-SKVG 336
             L+SVQPYLM+QVS AAQLPT DLTDLSTLRSWVNFPWGQSMEYEIYKA NT+RGY +KVG
Sbjct:   246 LESVQPYLMDQVSPAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTLRGYITKVG 305

Query:   337 FLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGM 396
               + E+SIPD ILRQAKGLA+++VA+VGVMVTY IGTGLV+ARR+DGSWSPPSAISSFG+
Sbjct:   306 SSRTERSIPDAILRQAKGLAVITVARVGVMVTYKIGTGLVVARRDDGSWSPPSAISSFGL 365

Query:   397 GWGAQ 401
             GWGAQ
Sbjct:   366 GWGAQ 370
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2084716 AT3G43230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HL8 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1346118 Sh3yl1 "Sh3 domain YSC-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306440 Sh3yl1 "SH3 domain containing, Ysc84-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNR2 SH3YL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0G4 SH3YL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
SGD|S000001058 YSC84 "Actin-binding protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H8W4 PLEKHF2 "Pleckstrin homology domain-containing family F member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012058 AN4168 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035818001
SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (474 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
cd11526 201 cd11526, SYLF_FYVE, The SYLF domain (also called D 4e-42
pfam0136368 pfam01363, FYVE, FYVE zinc finger 2e-23
cd11525 199 cd11525, SYLF_SH3YL1_like, The SYLF domain (also c 2e-21
cd11524 194 cd11524, SYLF, The SYLF domain (also called DUF500 5e-19
smart0006468 smart00064, FYVE, Protein present in Fab1, YOTB, V 1e-18
cd0006557 cd00065, FYVE, FYVE domain; Zinc-binding domain; t 7e-18
COG2930 227 COG2930, COG2930, Uncharacterized conserved protei 1e-10
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins Back     alignment and domain information 
 Score =  146 bits (371), Expect = 4e-42
 Identities = 50/83 (60%), Positives = 64/83 (77%)

Query: 320 YEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIAR 379
            EI KAANT++ + K G L+P++SIP  +LR AKGLA L+VAK G +V+  +GTGLV+AR
Sbjct: 1   GEIRKAANTLQNFFKGGNLEPDQSIPHALLRGAKGLAFLTVAKAGFIVSGKVGTGLVVAR 60

Query: 380 RNDGSWSPPSAISSFGMGWGAQV 402
             DGSWS PSAI + G+GWGAQV
Sbjct: 61  LPDGSWSAPSAIGTAGLGWGAQV 83

This subfamily is composed of uncharacterized proteins from plants and stramenopiles containing a FYVE zinc finger domain followed by a SYLF domain (also called DUF500). The SYLF domain of the related protein, SH3YL1, binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 201
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger Back     alignment and domain information
>gnl|CDD|211401 cd11525, SYLF_SH3YL1_like, The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins Back     alignment and domain information
>gnl|CDD|211400 cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module Back     alignment and domain information
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
KOG1843 473 consensus Uncharacterized conserved protein [Funct 100.0
COG2930 227 Uncharacterized conserved protein [Function unknow 99.76
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 99.75
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 99.66
KOG1729288 consensus FYVE finger containing protein [General 99.55
PTZ00303 1374 phosphatidylinositol kinase; Provisional 99.52
KOG1819990 consensus FYVE finger-containing proteins [General 99.49
KOG1818 634 consensus Membrane trafficking and cell signaling 99.49
KOG1409404 consensus Uncharacterized conserved protein, conta 99.48
KOG1842 505 consensus FYVE finger-containing protein [General 99.38
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 99.36
KOG1841 1287 consensus Smad anchor for receptor activation [Def 99.06
KOG1843 473 consensus Uncharacterized conserved protein [Funct 98.89
KOG4424623 consensus Predicted Rho/Rac guanine nucleotide exc 98.74
KOG1811 1141 consensus Predicted Zn2+-binding protein, contains 97.2
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 97.13
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 96.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 96.2
KOG1841 1287 consensus Smad anchor for receptor activation [Def 93.79
KOG1729288 consensus FYVE finger containing protein [General 92.08
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 86.41
TIGR00622112 ssl1 transcription factor ssl1. This family is bas 86.26
PRK00464154 nrdR transcriptional regulator NrdR; Validated 84.69
TIGR02300129 FYDLN_acid conserved hypothetical protein TIGR0230 83.73
KOG0993542 consensus Rab5 GTPase effector Rabaptin-5 [Intrace 80.45
PF0797551 C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al 80.26
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-45  Score=361.65  Aligned_cols=301  Identities=38%  Similarity=0.452  Sum_probs=275.1

Q ss_pred             ccccCCCCCCCCCceeecCCCCCCCCCchhhhcccccCCCCccCCCCCcccccccCceeehhhHHHHHHHhhcCCcceee
Q 015652           88 YFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALA  167 (403)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~~~i~mwdv~~~~l~~~~~Kv~sl~  167 (403)
                      |++|+.+.        ++++|+|.+.++.+|..|.+.+.||+++|+++|.+++.++++.+||+|+..+......+-+..+
T Consensus        41 yvl~da~g--------l~~i~~lkegflfsgr~Gsgviv~~l~dGtwsapsa~~~~g~g~g~~Vgveltd~V~ilNs~~a  112 (473)
T KOG1843|consen   41 YVLKDAPG--------LVSIPVLKEGFLFSGRAGSGVIVGYLKDGTWSAPSAIAEAGEGAGGMVGVELTDFVIILNSALA  112 (473)
T ss_pred             ceeccCCc--------ceEeeeecccccccccccCceeeeecCCCCcCcchhhhhccccchhhhHHHHHHHHHhhcchHh
Confidence            77777775        6899999999999999999999999999999999999999999999999987755544444556


Q ss_pred             ecCCCCCcccchhhHHHHHHHHHHHHHHhhhccCCccccccCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceE
Q 015652          168 KGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIF  247 (403)
Q Consensus       168 ~gd~~~~~~Sw~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vf  247 (403)
                      +..+.+..+..+...     |..++..|.+.++...++.++.++|.|.+++....|+.|..+|+.|+.||||||.|+.+|
T Consensus       113 v~~f~~~G~itLGgn-----~svsAgPLgr~aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~  187 (473)
T KOG1843|consen  113 VQSFARFGTITLGGN-----LSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIF  187 (473)
T ss_pred             hhhhhhcCeeeecCc-----ceeccCcccccchhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCcc
Confidence            666666666665332     456788888888888889999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCccccCcchHhHhcccchhhhhhcccccCCCccCCCccccccceeccCCCCchHHHHHHHHH
Q 015652          248 CGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAAN  327 (403)
Q Consensus       248 C~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~l~~~~S~a~q~p~~d~sd~~~lr~~lN~P~s~sle~eI~kAa~  327 (403)
                      |..|+.-+..+|..+....++|||+.|+..|...|.++.+..+.++|.+.++.+|..+.|+|.|+|++.+|+.+|+++++
T Consensus       188 cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~~~q~~~~d~~~da~qy~d~d~~Di~~s~sstn~~~~~~~e~s~~rra~  267 (473)
T KOG1843|consen  188 CRAKSILSGLVPVPFAADPLQRVLDSCAFNLESVQGSLDDQYSDAAQYADHDYTDIPTSRSSTNFPSGRSMERSIYRRAN  267 (473)
T ss_pred             chhhhhhccCCCCCcccCCHHHHHhhHhhccCCCccccccccCcccccCcccccccccccccccCcccCcchHHHHHhhh
Confidence            99999999888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh-hccCCCCCCCCchhHHhhhcceeEEEEEEeeceeEEEEeeeEEEEEEcCCCCcCCCceEEEeceeEEEee
Q 015652          328 TIRGY-SKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQV  402 (403)
Q Consensus       328 tL~~f-~ki~~~~pe~sIP~~lL~~AkGlai~~v~K~g~~~gg~~G~G~~~~r~~~G~WS~P~~~~~~g~~~G~Q~  402 (403)
                      +|+.+ +++....+|..| ...|.+|||++++++.++|.+...+.|+|++++|+++|+||+|++|+..|++||.|+
T Consensus       268 slrg~r~~~~dddded~~-~a~~srakgLa~~t~~~~g~l~~yk~~s~~~~srR~~Gs~s~~s~~s~~glgWgaq~  342 (473)
T KOG1843|consen  268 SLRGYRSRVDDDDDEDSI-DAGLSRAKGLAPITVARSGVLDTYKLGSSLVVSRRNDGSWSPRSAISRFGLGWGAQA  342 (473)
T ss_pred             hcccceeecccCchhhhh-hhhhhhcccCCcccccccccccccccccccceecccCCCCCCcchhcccccccchhc
Confidence            99888 557777888889 999999999999999999999999999999999999999999999999999999997

>COG2930 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>TIGR00622 ssl1 transcription factor ssl1 Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300 Back     alignment and domain information
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1joc_A125 Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I 1e-10
1z2q_A84 High-Resolution Solution Structure Of The Lm5-1 Fyv 1e-09
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 3e-08
1hyi_A65 Solution Structure Of The Eea1 Fyve Domain Complexe 8e-08
2yw8_A82 Crystal Structure Of Human Run And Fyve Domain-Cont 3e-07
2yqm_A89 Solution Structure Of The Fyve Domain In Zinc Finge 5e-07
3t7l_A90 Crystal Structure Of The Fyve Domain Of Endofin (Zf 1e-06
1vfy_A73 Phosphatidylinositol-3-Phosphate Binding Fyve Domai 5e-06
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 6e-06
3mpx_A434 Crystal Structure Of The Dh And Ph-1 Domains Of Hum 2e-05
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
           +W  D+    CM CG  F  +   RHHCR CG IFC ECS   +L P       P RVCD
Sbjct: 62  KWAEDNEVQNCMACGKGF-SVTVRRHHCRQCGNIFCAECSAKNALTPSS---KKPVRVCD 117
Query: 273 VCCVRLQ 279
            C   LQ
Sbjct: 118 ACFNDLQ 124
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 Back     alignment and structure
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 Back     alignment and structure
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 Back     alignment and structure
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90 Back     alignment and structure
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 3e-28
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 8e-27
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 8e-27
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 3e-25
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 2e-23
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 4e-21
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 8e-19
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 2e-16
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 2e-16
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 1e-13
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 2e-11
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 2e-05
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 5e-05
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 5e-05
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 Back     alignment and structure
 Score =  105 bits (263), Expect = 3e-28
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQ 268
                W  D  A AC  CG  F   +  RHHCR CG + CG+CS+ R+ +P    +++P+
Sbjct: 10  QSKGYWQEDEDAPACNGCGCVFTTTV-RRHHCRNCGYVLCGDCSRHRAAIP-MRGITEPE 67

Query: 269 RVCDVCCVRLQS 280
           RVCD C + L+S
Sbjct: 68  RVCDACYLALRS 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 99.81
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 99.81
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 99.79
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 99.79
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 99.79
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 99.77
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.69
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.69
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 99.66
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 99.6
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 99.58
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 97.77
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 96.32
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 96.17
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 94.92
2csz_A76 Synaptotagmin-like protein 4; exophilin 2, granuph 92.43
1wff_A85 Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc 90.87
1wfh_A64 Zinc finger (AN1-like) family protein; ZF-AN1 doma 89.98
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 89.17
1wfl_A74 Zinc finger protein 216; ZF-AN1 domain, zinc bindi 89.1
1wg2_A64 Zinc finger (AN1-like) family protein; riken struc 85.15
1z60_A59 TFIIH basal transcription factor complex P44 subun 84.57
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.81  E-value=1.1e-20  Score=153.03  Aligned_cols=69  Identities=20%  Similarity=0.458  Sum_probs=61.1

Q ss_pred             CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCC------CCccccCcchHhHhcc
Q 015652          210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRV------SDPQRVCDVCCVRLQS  280 (403)
Q Consensus       210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~------~~pvRVC~~C~~~L~~  280 (403)
                      ..+.|+||+++..|+.|+++|+++ +||||||+||+|||++||+++++||.. +.      .+++|||+.||..|..
T Consensus         4 ~~~~W~pd~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~l~~~-g~~~p~~~~~~~RVC~~C~~~l~~   78 (84)
T 1x4u_A            4 GSSGRYPTNNFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFKVPKSSM-GATAPEAQRETVFVCASCNQTLSK   78 (84)
T ss_dssp             CCCCSCSCCCCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEEECSTTT-SCCCSSCSSCCEEECHHHHHHHHS
T ss_pred             CCCccccCCCCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCceecccc-cccCccccCCccEECHHHHHHHhc
Confidence            468999999999999999999975 899999999999999999999999842 32      3689999999998865
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1joca164 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) 2e-18
d1dvpa272 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me 1e-16
d1wfka_88 g.50.1.1 (A:) Zinc finger FYVE domain containing p 1e-15
d1zbdb_124 g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat 2e-15
d1vfya_67 g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch 9e-15
d1y02a251 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro 1e-13
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-18
 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
           +W  D+    CM CG  F  +   RHHCR CG IFC ECS   +L P       P RVCD
Sbjct: 1   KWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTP---SSKKPVRVCD 56

Query: 273 VCCVRLQ 279
            C   LQ
Sbjct: 57  ACFNDLQ 63
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1joca164 Eea1 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1dvpa272 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.75
d1vfya_67 vps27p protein {Baker's yeast (Saccharomyces cerev 99.71
d1wfka_88 Zinc finger FYVE domain containing protein 19 {Mou 99.64
d1y02a251 Rififylin (FYVE-RING finger protein Sakura) {Human 99.38
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 98.97
d1wfla_74 Zinc finger A20 domain containing protein 2 {Mouse 92.09
d1wffa_85 ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus 90.18
d1wfha_64 Zinc finger A20 and AN1 domains containing protein 89.8
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 88.56
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 86.45
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.3e-21  Score=145.49  Aligned_cols=63  Identities=48%  Similarity=1.052  Sum_probs=58.2

Q ss_pred             CcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015652          213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ  279 (403)
Q Consensus       213 ~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~  279 (403)
                      .|+||+++..|+.|+++|+++ .||||||+||+|||+.||+++.++|.   ..+|+|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~~F~~~-~rrHHCR~CG~v~C~~Cs~~~~~~~~---~~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCcccCC-ccccchhhhCCeecccccCCceecCC---CCCccEehHHHHHHhc
Confidence            499999999999999999975 79999999999999999999999984   3679999999999886
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure