Query 015654
Match_columns 403
No_of_seqs 90 out of 92
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 51.9 6.4 0.00022 30.4 1.8 28 219-248 7-34 (77)
2 3lvh_D LCB, clathrin light cha 51.5 25 0.00085 32.9 6.0 32 131-162 93-124 (205)
3 2cqe_A KIAA1064 protein; CCCH 44.5 11 0.00039 30.5 2.3 13 264-276 65-77 (98)
4 3lvg_D LCB, clathrin light cha 44.0 36 0.0012 31.4 5.7 25 132-156 79-103 (190)
5 2rhk_C Cleavage and polyadenyl 42.5 8.4 0.00029 29.6 1.2 27 219-247 13-39 (72)
6 2cqe_A KIAA1064 protein; CCCH 41.2 13 0.00044 30.2 2.1 24 221-246 12-35 (98)
7 1m9o_A Tristetraproline; Cys3H 40.5 17 0.00058 27.2 2.6 28 219-248 9-37 (77)
8 2b3g_B Cellular tumor antigen 38.5 13 0.00043 24.9 1.4 14 133-146 11-24 (28)
9 3hym_A Anaphase-promoting comp 38.4 10 0.00035 25.8 0.9 23 127-149 3-25 (29)
10 2d9m_A Zinc finger CCCH-type d 33.2 19 0.00066 28.4 1.9 26 221-248 19-44 (69)
11 2xpi_B Anaphase-promoting comp 22.2 22 0.00076 29.0 0.4 22 127-148 4-25 (81)
12 1j9i_A GPNU1 DBD;, terminase s 20.8 23 0.0008 25.8 0.3 18 132-149 38-55 (68)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.85 E-value=6.4 Score=30.36 Aligned_cols=28 Identities=7% Similarity=-0.209 Sum_probs=19.0
Q ss_pred CCCCCCcceeccCCCccccCCCCccchhhh
Q 015654 219 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 248 (403)
Q Consensus 219 k~~sk~CKF~nrg~~RGRcgrKcRF~Kr~~ 248 (403)
...+..|+||.+|.|+ .|..|+|+|...
T Consensus 7 ~~k~~~C~~fl~G~C~--~G~~C~fsH~~~ 34 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCK--KGDQCEFLHEYD 34 (77)
T ss_dssp CCTTSBCHHHHTTCCS--CTTSSSSBCSCC
T ss_pred CCcceeCHhHccCcCC--CCCCCCCccccc
Confidence 3456788888887754 555677777643
No 2
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=51.49 E-value=25 Score=32.93 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.8
Q ss_pred cccccCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 015654 131 LALTYTEQEVKQWCEERRKNYPTKANINKKLT 162 (403)
Q Consensus 131 ~~l~~t~~eI~~WreeRkKn~PT~anVe~K~~ 162 (403)
.++...|+-|+.|||+|++.-=-+.-.++++.
T Consensus 93 d~leeEPEsIRkWREEq~kRLeekDa~sekkk 124 (205)
T 3lvh_D 93 DRLTQEPESIRKWREEQRKRLQELDAASKVME 124 (205)
T ss_dssp STTTBSTTHHHHHHHHHTTTSTHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999987755544444443
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=44.46 E-value=11 Score=30.52 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=7.6
Q ss_pred chhHHHHHHHHHH
Q 015654 264 KPTLLQKLLSADV 276 (403)
Q Consensus 264 rpTLLqkLL~~DI 276 (403)
.+.+|.++|..|-
T Consensus 65 ~~~~l~~~l~~~~ 77 (98)
T 2cqe_A 65 TRELLDKMLADDA 77 (98)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhHHhhhcchhh
Confidence 3556666665554
No 4
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=44.04 E-value=36 Score=31.41 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=20.1
Q ss_pred ccccCHHHHHHHHHHHHhcCCChHH
Q 015654 132 ALTYTEQEVKQWCEERRKNYPTKAN 156 (403)
Q Consensus 132 ~l~~t~~eI~~WreeRkKn~PT~an 156 (403)
++...|+-|+.||||+++.-=-+..
T Consensus 79 ~LeEEPEsIRKWREEQkkRLEeRDA 103 (190)
T 3lvg_D 79 RLTQEPESIRKWREEQRKRLQELDA 103 (190)
T ss_dssp TTTTSTTHHHHHHHHHTTTSTHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999987644433
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=42.51 E-value=8.4 Score=29.65 Aligned_cols=27 Identities=7% Similarity=-0.223 Sum_probs=20.2
Q ss_pred CCCCCCcceeccCCCccccCCCCccchhh
Q 015654 219 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQ 247 (403)
Q Consensus 219 k~~sk~CKF~nrg~~RGRcgrKcRF~Kr~ 247 (403)
...+..|+||.+|.|+ .|..|+|++..
T Consensus 13 ~~k~~vCk~fl~G~C~--~G~~C~fsH~~ 39 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCK--KGDQCEFLHEY 39 (72)
T ss_dssp CCCCSBCHHHHTTCCC--CGGGSSSBCSC
T ss_pred CCcCeeCHHHhcCCCC--CCCCCCCcccc
Confidence 3467789999998764 55668888874
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=41.17 E-value=13 Score=30.21 Aligned_cols=24 Identities=4% Similarity=-0.162 Sum_probs=16.1
Q ss_pred CCCCcceeccCCCccccCCCCccchh
Q 015654 221 LNKRGRFQNNYDKRGRYKRKDQFSKE 246 (403)
Q Consensus 221 ~sk~CKF~nrg~~RGRcgrKcRF~Kr 246 (403)
.+..|+||.+|.|+ .|.+|+|+|.
T Consensus 12 k~~lC~~f~~G~C~--~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCA--RAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCS--CSTTCSSBSS
T ss_pred CCccCcccccCcCC--CCCCCCCCCC
Confidence 56678888766654 5666777765
No 7
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=40.52 E-value=17 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=20.9
Q ss_pred CCCCCCcceec-cCCCccccCCCCccchhhh
Q 015654 219 MPLNKRGRFQN-NYDKRGRYKRKDQFSKEQK 248 (403)
Q Consensus 219 k~~sk~CKF~n-rg~~RGRcgrKcRF~Kr~~ 248 (403)
+-.+..|+||. +|.|+ +|.+|+|+|...
T Consensus 9 ~~kt~~C~~f~~~G~C~--~G~~C~f~H~~~ 37 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCR--YGAKCQFAHGLG 37 (77)
T ss_dssp CCCSCCCSGGGGTSCCT--TTTTCSSCSSSC
T ss_pred CccchhCHHhhhCCCcC--CCCCccCCCCCh
Confidence 45678999885 66664 778899988654
No 8
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=38.51 E-value=13 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.760 Sum_probs=12.3
Q ss_pred cccCHHHHHHHHHH
Q 015654 133 LTYTEQEVKQWCEE 146 (403)
Q Consensus 133 l~~t~~eI~~Wree 146 (403)
|+.+|.||.||.-+
T Consensus 11 lmlspddi~qw~s~ 24 (28)
T 2b3g_B 11 LMLSPDDIEQWFTE 24 (28)
T ss_dssp GGCCHHHHHHHHHC
T ss_pred hhcChHHHHHHhhc
Confidence 78999999999754
No 9
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=38.44 E-value=10 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred cccccccccCHHHHHHHHHHHHh
Q 015654 127 KRKSLALTYTEQEVKQWCEERRK 149 (403)
Q Consensus 127 ~rk~~~l~~t~~eI~~WreeRkK 149 (403)
+|+|-.|..+.+||++|-+.|+.
T Consensus 3 RRkPT~I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 3 RRKPTRLELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCCCCCCCSGGGHHHHHHHHH
T ss_pred CCCCcEEEecHHHHHHHHHHHHH
Confidence 58888999999999999988874
No 10
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.21 E-value=19 Score=28.43 Aligned_cols=26 Identities=8% Similarity=-0.197 Sum_probs=20.9
Q ss_pred CCCCcceeccCCCccccCCCCccchhhh
Q 015654 221 LNKRGRFQNNYDKRGRYKRKDQFSKEQK 248 (403)
Q Consensus 221 ~sk~CKF~nrg~~RGRcgrKcRF~Kr~~ 248 (403)
..+-|+.|.+|.|. +|.+|.|+|-..
T Consensus 19 k~~LC~~~~~G~C~--~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNGTCP--EGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHSCCS--SCSSCSSBSSHH
T ss_pred CcccCcccCcCCCC--CCCccCCcCCHH
Confidence 44889999888875 999999997543
No 11
>2xpi_B Anaphase-promoting complex subunit HCN1 HCN1/CDC2 cyclosome/APC complex protein HCN1,...; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=22.20 E-value=22 Score=29.00 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.7
Q ss_pred cccccccccCHHHHHHHHHHHH
Q 015654 127 KRKSLALTYTEQEVKQWCEERR 148 (403)
Q Consensus 127 ~rk~~~l~~t~~eI~~WreeRk 148 (403)
+|+|-.|..|++||.+|-++|-
T Consensus 4 RR~PTaI~iT~EDI~ayEd~rl 25 (81)
T 2xpi_B 4 RRNPTAIQITAEDVLAYDEEKL 25 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHCCC-
T ss_pred ccCCceEEeCHHHHHHHHHHHH
Confidence 6888999999999999987653
No 12
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.80 E-value=23 Score=25.83 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=15.6
Q ss_pred ccccCHHHHHHHHHHHHh
Q 015654 132 ALTYTEQEVKQWCEERRK 149 (403)
Q Consensus 132 ~l~~t~~eI~~WreeRkK 149 (403)
.+.|..+||.+|+++|..
T Consensus 38 ~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 38 EVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp CCEEEHHHHHHHHTTTGG
T ss_pred eEEECHHHHHHHHHHCcc
Confidence 378999999999998864
Done!