Query 015654
Match_columns 403
No_of_seqs 90 out of 92
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 16:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cqea1 g.66.1.1 (A:458-513) Z 78.7 0.21 1.5E-05 36.6 0.2 22 224-247 2-24 (56)
2 d1m9oa_ g.66.1.1 (A:) Tristetr 54.2 3.4 0.00025 27.6 2.2 26 221-248 8-34 (40)
3 d1rgoa1 g.66.1.1 (A:151-186) B 38.6 4.1 0.0003 26.6 0.7 26 221-248 5-31 (36)
4 d1rgoa2 g.66.1.1 (A:187-220) B 35.8 4.4 0.00032 26.3 0.5 26 220-247 6-32 (34)
5 d1ofcx1 a.4.1.3 (X:799-850) SA 15.2 19 0.0014 25.3 0.4 29 112-146 15-43 (52)
6 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 13.3 1.9E+02 0.014 20.6 5.7 38 124-161 13-55 (80)
7 d1kw4a_ a.60.1.2 (A:) Polyhome 12.7 54 0.0039 22.3 2.3 18 129-146 2-19 (70)
8 d2bzea1 b.34.21.1 (A:345-476) 10.8 1.1E+02 0.0077 23.7 3.8 29 135-163 95-126 (132)
9 d2gycc1 c.22.1.1 (C:1-198) Rib 10.2 93 0.0068 25.9 3.4 58 26-85 19-77 (198)
10 d2cqea2 g.66.1.1 (A:429-457) Z 9.7 48 0.0035 20.9 1.0 13 221-233 5-17 (29)
No 1
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.70 E-value=0.21 Score=36.64 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=16.7
Q ss_pred CcceeccCC-CccccCCCCccchhh
Q 015654 224 RGRFQNNYD-KRGRYKRKDQFSKEQ 247 (403)
Q Consensus 224 ~CKF~nrg~-~RGRcgrKcRF~Kr~ 247 (403)
+||||.+|. |. -|.+|+|+|.|
T Consensus 2 PCK~yHtg~kCy--~gd~C~FSH~p 24 (56)
T d2cqea1 2 PCKLYHTTGNCI--NGDDCMFSHDP 24 (56)
T ss_dssp BCSHHHHTSCCS--SCTTCSSBCCC
T ss_pred CcceeecCCccc--CCCcccccCCc
Confidence 699999874 43 56789999853
No 2
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.21 E-value=3.4 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=19.7
Q ss_pred CCCCcceecc-CCCccccCCCCccchhhh
Q 015654 221 LNKRGRFQNN-YDKRGRYKRKDQFSKEQK 248 (403)
Q Consensus 221 ~sk~CKF~nr-g~~RGRcgrKcRF~Kr~~ 248 (403)
.++.|++|.. |.|+ +|..|.|+|-..
T Consensus 8 KT~lC~~~~~~g~C~--~G~~C~FAHg~~ 34 (40)
T d1m9oa_ 8 KTELCRTYSESGRCR--YGAKCQFAHGLG 34 (40)
T ss_dssp CSCCCSGGGGTSCCT--TTTTCSSCSSSC
T ss_pred ccccChhhhcCCcCC--CCCCCCCCCCHH
Confidence 6789998765 6764 888899997543
No 3
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.57 E-value=4.1 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=19.6
Q ss_pred CCCCcceecc-CCCccccCCCCccchhhh
Q 015654 221 LNKRGRFQNN-YDKRGRYKRKDQFSKEQK 248 (403)
Q Consensus 221 ~sk~CKF~nr-g~~RGRcgrKcRF~Kr~~ 248 (403)
.++-|++|.. |.|. +|..|.|+|-..
T Consensus 5 KT~lC~~~~~~g~C~--~G~~C~FAHg~~ 31 (36)
T d1rgoa1 5 KTELCRPFEESGTCK--YGEKCQFAHGFH 31 (36)
T ss_dssp TSSBCHHHHHHSCCT--TGGGCSSBSSGG
T ss_pred chhhCcchhcCCcCC--CCCcCCCcCCHH
Confidence 5789998864 6654 888899987644
No 4
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.83 E-value=4.4 Score=26.26 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=20.2
Q ss_pred CCCCCcceecc-CCCccccCCCCccchhh
Q 015654 220 PLNKRGRFQNN-YDKRGRYKRKDQFSKEQ 247 (403)
Q Consensus 220 ~~sk~CKF~nr-g~~RGRcgrKcRF~Kr~ 247 (403)
=.++-|++|.. |.|. +|.+|.|+|..
T Consensus 6 yKT~lC~~f~~~g~C~--yG~~C~FaHg~ 32 (34)
T d1rgoa2 6 YKTELCRTFHTIGFCP--YGPRCHFIHNA 32 (34)
T ss_dssp TTCSBCHHHHHHSCCT--TGGGCSSBCCS
T ss_pred ccchhccccCCCCcCC--CCCcccCcCCC
Confidence 36889999876 6664 88999998753
No 5
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.17 E-value=19 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=22.9
Q ss_pred cccCCCCCCCccccccccccccccCHHHHHHHHHH
Q 015654 112 IKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEE 146 (403)
Q Consensus 112 ~~~~~~~~~~~~~~~~rk~~~l~~t~~eI~~Wree 146 (403)
.++|+.|+..||++=. .-|++||++|-..
T Consensus 15 ekyGR~d~~~Ia~e~~------~Kt~eEV~~Y~~v 43 (52)
T d1ofcx1 15 EKYGRDDIDNIAKDVE------GKTPEEVIEYNAV 43 (52)
T ss_dssp HHHCTTCHHHHTTSST------TCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhc------CCCHHHHHHHHHH
Confidence 5788999999998822 3489999998764
No 6
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.34 E-value=1.9e+02 Score=20.55 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=26.5
Q ss_pred ccccccccccccCHHHHHHHHH--HHH---hcCCChHHHHHHH
Q 015654 124 QEKKRKSLALTYTEQEVKQWCE--ERR---KNYPTKANINKKL 161 (403)
Q Consensus 124 ~~~~rk~~~l~~t~~eI~~Wre--eRk---Kn~PT~anVe~K~ 161 (403)
..+++|+....+|++.++.-.+ |+- -+||+...++.-+
T Consensus 13 ~~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la 55 (80)
T d1wh7a_ 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFC 55 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHH
T ss_pred CccCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHH
Confidence 3446677888999998887654 442 4799988777443
No 7
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}
Probab=12.71 E-value=54 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=15.1
Q ss_pred cccccccCHHHHHHHHHH
Q 015654 129 KSLALTYTEQEVKQWCEE 146 (403)
Q Consensus 129 k~~~l~~t~~eI~~Wree 146 (403)
++|+-.-|++||.+|++.
T Consensus 2 ~~pv~~Ws~~dV~~wL~~ 19 (70)
T d1kw4a_ 2 RPPISSWSVDDVSNFIRE 19 (70)
T ss_dssp CCCGGGCCHHHHHHHHHT
T ss_pred CCchhcCCHHHHHHHHHh
Confidence 467778899999999965
No 8
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=1.1e+02 Score=23.74 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHHHHhc---CCChHHHHHHHHh
Q 015654 135 YTEQEVKQWCEERRKN---YPTKANINKKLTE 163 (403)
Q Consensus 135 ~t~~eI~~WreeRkKn---~PT~anVe~K~~e 163 (403)
.|++|...|++.=++. .||..-|++|..+
T Consensus 95 fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~ 126 (132)
T d2bzea1 95 FTESEFMKWKEAMFSAGMQLPTLDEINKKELS 126 (132)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4799999999876654 8999999988765
No 9
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]}
Probab=10.21 E-value=93 Score=25.87 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=43.7
Q ss_pred eeccccchhhhHHHHhhhccccccCCCCccC-CCCCCCCCCcccccCCccCCCcccccccc
Q 015654 26 FSIDLQLPLVNLCLLLLLQRNFIQNGQGSIS-KSNSKKVSGKNFIKNRTKEFSQGFQKSHF 85 (403)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~~~~~kn~~~~~~~~~~qg~qks~~ 85 (403)
|++++...||-.| +.||.+..+.|-.++- .+-+.++..|-|.-+-++..+||..+|..
T Consensus 19 F~~~~~~~llh~~--v~~~~a~~R~gt~~tKtRseV~g~gkKp~~QKGTGrAR~Gs~rsP~ 77 (198)
T d2gycc1 19 FGRDFNEALVHQV--VVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPI 77 (198)
T ss_dssp CCSCCCHHHHTTT--SSSCTTCCSCCCCSSCSCCCCCCSCSSCSCCCCCCCBTTBCCSCSS
T ss_pred hCCCcCHHHHHHH--HHHHHHhccCCCcccceehhccCCccCcccccCCCCCCCcCcchhh
Confidence 7788777776655 4688887777766553 45677778888888888888888888865
No 10
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.66 E-value=48 Score=20.91 Aligned_cols=13 Identities=8% Similarity=-0.263 Sum_probs=10.4
Q ss_pred CCCCcceeccCCC
Q 015654 221 LNKRGRFQNNYDK 233 (403)
Q Consensus 221 ~sk~CKF~nrg~~ 233 (403)
...-||||-+|.|
T Consensus 5 kkelCKfYvqGyC 17 (29)
T d2cqea2 5 KRELCKFYITGFC 17 (29)
T ss_dssp CCSBCTTTTTTCC
T ss_pred hhhhhhhheeeee
Confidence 3457999999995
Done!