Query 015655
Match_columns 403
No_of_seqs 235 out of 1043
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 2.5E-43 5.4E-48 346.8 10.1 194 6-199 7-209 (304)
2 smart00415 HSF heat shock fact 100.0 1.8E-34 3.8E-39 244.7 4.8 94 10-103 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 1.4E-34 3E-39 243.7 3.5 93 13-105 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 1.1E-33 2.4E-38 276.2 5.2 101 6-106 5-115 (282)
5 PF00178 Ets: Ets-domain; Int 95.4 0.0038 8.3E-08 51.7 -0.3 59 15-73 5-65 (85)
6 smart00413 ETS erythroblast tr 92.4 0.092 2E-06 43.9 2.3 58 16-73 6-65 (87)
7 COG3074 Uncharacterized protei 91.9 0.98 2.1E-05 36.5 7.4 51 129-179 23-73 (79)
8 PF11932 DUF3450: Protein of u 88.2 3.4 7.3E-05 40.1 9.5 64 124-187 49-112 (251)
9 PRK15422 septal ring assembly 87.3 3.9 8.5E-05 33.7 7.7 52 129-180 23-74 (79)
10 PF12325 TMF_TATA_bd: TATA ele 86.1 5.8 0.00013 35.0 8.9 59 124-182 30-91 (120)
11 KOG3806 Predicted transcriptio 85.9 0.66 1.4E-05 43.5 2.9 64 9-72 66-131 (177)
12 PF06005 DUF904: Protein of un 85.5 10 0.00022 30.6 9.2 51 132-182 19-69 (72)
13 PF06005 DUF904: Protein of un 84.5 7.7 0.00017 31.3 8.1 46 129-174 9-54 (72)
14 PF10473 CENP-F_leu_zip: Leuci 84.1 8.5 0.00019 34.9 9.1 59 127-185 55-113 (140)
15 PF02183 HALZ: Homeobox associ 81.8 6.3 0.00014 29.0 6.1 41 129-169 3-43 (45)
16 PF10168 Nup88: Nuclear pore c 80.9 7.5 0.00016 43.8 9.1 62 128-189 562-623 (717)
17 PF10779 XhlA: Haemolysin XhlA 79.7 22 0.00049 28.1 9.1 57 128-184 3-59 (71)
18 TIGR02894 DNA_bind_RsfA transc 78.3 15 0.00033 34.1 8.8 54 133-186 99-152 (161)
19 PF12329 TMF_DNA_bd: TATA elem 78.1 19 0.00042 29.0 8.4 58 126-183 14-71 (74)
20 PF04340 DUF484: Protein of un 77.6 11 0.00024 35.8 8.1 18 85-102 17-34 (225)
21 PF06156 DUF972: Protein of un 76.9 11 0.00023 32.7 7.0 46 128-173 12-57 (107)
22 PF10224 DUF2205: Predicted co 76.8 33 0.00072 28.3 9.5 49 140-188 18-66 (80)
23 PF04111 APG6: Autophagy prote 76.7 18 0.00038 36.7 9.6 52 124-175 43-94 (314)
24 KOG4460 Nuclear pore complex, 76.4 15 0.00032 40.3 9.2 61 131-191 588-648 (741)
25 TIGR02449 conserved hypothetic 75.9 38 0.00082 27.0 9.2 56 129-184 5-60 (65)
26 PF03310 Cauli_DNA-bind: Cauli 75.8 6.9 0.00015 34.7 5.5 47 142-188 3-49 (121)
27 PF08826 DMPK_coil: DMPK coile 75.5 19 0.0004 28.3 7.3 45 127-171 14-58 (61)
28 PRK13169 DNA replication intia 71.3 16 0.00035 31.8 6.8 45 127-171 11-55 (110)
29 PF02403 Seryl_tRNA_N: Seryl-t 70.0 26 0.00057 29.4 7.7 64 123-186 35-101 (108)
30 PF11932 DUF3450: Protein of u 66.3 46 0.00099 32.3 9.5 58 129-186 47-104 (251)
31 PF11559 ADIP: Afadin- and alp 65.9 49 0.0011 29.5 9.0 49 127-175 55-103 (151)
32 TIGR02449 conserved hypothetic 65.5 50 0.0011 26.3 7.8 46 129-174 12-57 (65)
33 PF04880 NUDE_C: NUDE protein, 64.9 3.9 8.4E-05 38.1 1.7 37 129-170 19-55 (166)
34 PRK00888 ftsB cell division pr 64.6 17 0.00037 31.2 5.5 36 132-167 28-63 (105)
35 PF07106 TBPIP: Tat binding pr 62.7 32 0.0007 31.3 7.3 63 122-184 70-134 (169)
36 PF04728 LPP: Lipoprotein leuc 62.3 72 0.0016 24.8 8.6 47 132-178 4-50 (56)
37 PRK15422 septal ring assembly 62.0 91 0.002 25.8 9.3 49 128-176 8-63 (79)
38 PRK10884 SH3 domain-containing 62.0 41 0.00089 32.3 8.1 29 72-100 65-95 (206)
39 TIGR03752 conj_TIGR03752 integ 61.9 41 0.00088 36.3 8.8 37 127-163 69-105 (472)
40 PF10473 CENP-F_leu_zip: Leuci 61.6 74 0.0016 28.9 9.2 53 126-178 68-120 (140)
41 PF07106 TBPIP: Tat binding pr 60.9 45 0.00098 30.3 7.9 57 123-179 78-136 (169)
42 PRK10803 tol-pal system protei 60.5 59 0.0013 32.0 9.2 47 140-186 56-102 (263)
43 KOG4196 bZIP transcription fac 60.3 33 0.00072 30.9 6.6 44 134-184 77-120 (135)
44 PRK11637 AmiB activator; Provi 60.1 53 0.0012 34.3 9.3 56 129-184 80-135 (428)
45 PF08614 ATG16: Autophagy prot 60.0 81 0.0018 29.4 9.7 37 147-183 146-182 (194)
46 KOG4005 Transcription factor X 59.6 46 0.001 33.0 8.0 55 127-181 93-152 (292)
47 PRK00295 hypothetical protein; 59.0 54 0.0012 26.0 7.1 42 129-170 10-51 (68)
48 COG1579 Zn-ribbon protein, pos 59.0 62 0.0013 31.9 8.9 56 122-177 87-142 (239)
49 PF08581 Tup_N: Tup N-terminal 58.7 91 0.002 25.6 8.5 46 133-178 6-58 (79)
50 PF08317 Spc7: Spc7 kinetochor 58.4 64 0.0014 32.6 9.3 51 133-183 211-261 (325)
51 TIGR00414 serS seryl-tRNA synt 58.2 50 0.0011 34.8 8.7 74 123-196 36-114 (418)
52 PRK00736 hypothetical protein; 57.6 53 0.0012 26.0 6.8 42 129-170 10-51 (68)
53 smart00338 BRLZ basic region l 57.0 29 0.00063 26.6 5.2 25 129-153 31-55 (65)
54 PF07200 Mod_r: Modifier of ru 56.9 65 0.0014 28.5 8.1 54 126-179 36-89 (150)
55 PF04156 IncA: IncA protein; 56.8 83 0.0018 28.8 9.0 60 127-186 91-150 (191)
56 COG3074 Uncharacterized protei 56.8 86 0.0019 25.6 7.8 44 129-172 9-52 (79)
57 PRK11637 AmiB activator; Provi 56.0 66 0.0014 33.6 9.2 46 129-174 73-118 (428)
58 PF04102 SlyX: SlyX; InterPro 55.5 45 0.00097 26.3 6.1 43 129-171 9-51 (69)
59 PF10805 DUF2730: Protein of u 55.2 70 0.0015 27.3 7.7 51 129-179 40-92 (106)
60 COG3883 Uncharacterized protei 53.9 64 0.0014 32.3 8.1 61 129-193 57-117 (265)
61 PRK05431 seryl-tRNA synthetase 53.6 49 0.0011 34.9 7.8 74 123-196 34-111 (425)
62 PLN02678 seryl-tRNA synthetase 53.6 61 0.0013 34.7 8.5 74 123-196 39-116 (448)
63 PRK04406 hypothetical protein; 53.2 63 0.0014 26.2 6.6 29 140-168 27-55 (75)
64 PRK04325 hypothetical protein; 52.6 67 0.0015 25.9 6.7 28 141-168 26-53 (74)
65 PRK06800 fliH flagellar assemb 52.5 1.2E+02 0.0025 29.3 9.2 61 129-189 36-114 (228)
66 PF00038 Filament: Intermediat 51.8 96 0.0021 30.6 9.2 45 128-172 213-257 (312)
67 PF04420 CHD5: CHD5-like prote 51.6 40 0.00086 30.9 6.0 63 125-187 41-108 (161)
68 TIGR02132 phaR_Bmeg polyhydrox 51.6 72 0.0016 30.3 7.6 56 129-184 84-139 (189)
69 PF04728 LPP: Lipoprotein leuc 51.5 1.1E+02 0.0023 23.8 7.3 44 128-171 7-50 (56)
70 PRK10884 SH3 domain-containing 51.3 79 0.0017 30.4 8.1 20 150-169 137-156 (206)
71 PRK02793 phi X174 lysis protei 50.9 75 0.0016 25.5 6.7 31 139-169 23-53 (72)
72 PF09744 Jnk-SapK_ap_N: JNK_SA 50.8 64 0.0014 29.8 7.1 23 164-186 129-151 (158)
73 PRK00846 hypothetical protein; 50.7 78 0.0017 26.0 6.8 30 141-170 30-59 (77)
74 PF07407 Seadorna_VP6: Seadorn 50.7 67 0.0014 33.3 7.8 33 122-154 30-62 (420)
75 COG4942 Membrane-bound metallo 50.5 93 0.002 33.2 9.1 63 125-187 60-125 (420)
76 PF10211 Ax_dynein_light: Axon 50.1 1E+02 0.0022 29.0 8.6 31 128-158 124-154 (189)
77 PF14282 FlxA: FlxA-like prote 50.1 1.1E+02 0.0025 26.0 8.2 49 130-178 18-70 (106)
78 PF04102 SlyX: SlyX; InterPro 50.1 1E+02 0.0022 24.3 7.3 48 129-176 2-49 (69)
79 PF11559 ADIP: Afadin- and alp 50.0 1.5E+02 0.0032 26.4 9.3 44 128-171 63-106 (151)
80 PRK02119 hypothetical protein; 49.9 78 0.0017 25.5 6.7 28 141-168 26-53 (73)
81 PF06156 DUF972: Protein of un 49.4 1.1E+02 0.0025 26.4 8.1 36 129-164 20-55 (107)
82 KOG0977 Nuclear envelope prote 49.4 67 0.0015 35.3 8.1 49 127-175 165-220 (546)
83 PF10224 DUF2205: Predicted co 49.2 90 0.0019 25.8 7.0 46 124-169 16-61 (80)
84 PF07407 Seadorna_VP6: Seadorn 49.0 80 0.0017 32.8 8.1 56 130-185 31-88 (420)
85 PF05377 FlaC_arch: Flagella a 48.9 69 0.0015 24.8 5.8 27 157-183 19-45 (55)
86 COG1579 Zn-ribbon protein, pos 48.0 75 0.0016 31.3 7.5 47 127-173 34-80 (239)
87 PF05377 FlaC_arch: Flagella a 47.4 1.3E+02 0.0029 23.3 7.6 24 145-168 14-37 (55)
88 PF05278 PEARLI-4: Arabidopsis 47.4 1.3E+02 0.0028 30.3 9.1 47 129-175 198-244 (269)
89 smart00787 Spc7 Spc7 kinetocho 47.3 1.2E+02 0.0026 30.9 9.1 50 134-183 207-256 (312)
90 PRK04325 hypothetical protein; 46.9 1.5E+02 0.0033 23.8 8.1 44 129-172 7-50 (74)
91 cd00632 Prefoldin_beta Prefold 46.7 98 0.0021 26.0 7.2 44 129-172 61-104 (105)
92 PF04156 IncA: IncA protein; 46.1 1.7E+02 0.0037 26.7 9.4 37 130-166 129-165 (191)
93 PF08317 Spc7: Spc7 kinetochor 46.0 1.4E+02 0.003 30.2 9.4 7 68-74 69-75 (325)
94 PLN02320 seryl-tRNA synthetase 45.3 91 0.002 34.0 8.3 106 84-196 66-175 (502)
95 PRK15396 murein lipoprotein; P 45.2 1.7E+02 0.0037 24.1 8.0 48 132-179 26-73 (78)
96 COG4026 Uncharacterized protei 45.0 1.3E+02 0.0028 29.9 8.4 58 127-184 138-195 (290)
97 PF00170 bZIP_1: bZIP transcri 44.6 1.2E+02 0.0026 23.1 6.8 25 129-153 31-55 (64)
98 PRK02119 hypothetical protein; 44.4 1.7E+02 0.0036 23.6 8.0 41 129-169 7-47 (73)
99 PRK13729 conjugal transfer pil 44.4 1.2E+02 0.0026 32.9 8.9 46 138-183 76-121 (475)
100 smart00338 BRLZ basic region l 44.2 1E+02 0.0022 23.6 6.4 32 133-164 28-59 (65)
101 PF04201 TPD52: Tumour protein 43.9 72 0.0016 29.8 6.3 37 132-168 30-66 (162)
102 PF04977 DivIC: Septum formati 43.8 70 0.0015 24.8 5.5 32 133-164 19-50 (80)
103 PF14282 FlxA: FlxA-like prote 42.8 1.9E+02 0.0041 24.7 8.4 55 123-177 18-76 (106)
104 PF08614 ATG16: Autophagy prot 42.6 1.5E+02 0.0033 27.6 8.5 51 129-179 121-171 (194)
105 PF13747 DUF4164: Domain of un 42.4 1.6E+02 0.0036 24.5 7.7 43 142-184 36-78 (89)
106 PF08781 DP: Transcription fac 42.2 1.4E+02 0.0031 27.2 7.9 35 132-166 2-36 (142)
107 PRK10963 hypothetical protein; 42.2 1.1E+02 0.0023 29.4 7.5 18 85-102 14-31 (223)
108 PRK13169 DNA replication intia 42.0 1.7E+02 0.0038 25.5 8.1 36 129-164 20-55 (110)
109 KOG0804 Cytoplasmic Zn-finger 41.8 1.2E+02 0.0026 32.7 8.3 56 129-184 344-400 (493)
110 PF02183 HALZ: Homeobox associ 41.8 77 0.0017 23.3 5.0 29 129-157 10-38 (45)
111 COG1730 GIM5 Predicted prefold 41.8 1.5E+02 0.0033 27.1 8.0 48 128-175 91-138 (145)
112 PRK00295 hypothetical protein; 41.6 1.8E+02 0.0038 23.1 8.2 45 129-173 3-47 (68)
113 PRK09039 hypothetical protein; 41.6 1.6E+02 0.0034 30.3 9.0 41 129-169 142-182 (343)
114 PF10146 zf-C4H2: Zinc finger- 41.2 2E+02 0.0043 28.2 9.2 54 127-180 35-88 (230)
115 PF10805 DUF2730: Protein of u 40.5 1.5E+02 0.0033 25.3 7.4 50 129-178 47-98 (106)
116 KOG4360 Uncharacterized coiled 40.3 1.4E+02 0.0031 32.7 8.7 57 129-185 224-280 (596)
117 PF12325 TMF_TATA_bd: TATA ele 40.3 2.6E+02 0.0057 24.7 9.2 49 125-173 17-65 (120)
118 PRK06798 fliD flagellar cappin 40.2 1.1E+02 0.0024 32.5 7.9 50 128-180 383-432 (440)
119 COG1382 GimC Prefoldin, chaper 39.8 1.3E+02 0.0028 26.7 7.0 39 130-168 69-107 (119)
120 PRK13923 putative spore coat p 39.5 2.3E+02 0.0051 26.6 9.0 40 145-184 111-150 (170)
121 PF13874 Nup54: Nucleoporin co 39.2 1.7E+02 0.0037 26.1 7.9 26 162-187 68-93 (141)
122 PF13094 CENP-Q: CENP-Q, a CEN 39.1 1.9E+02 0.004 26.1 8.3 51 129-179 32-82 (160)
123 PF12718 Tropomyosin_1: Tropom 38.6 1.3E+02 0.0028 27.1 7.1 38 131-168 21-58 (143)
124 PF04111 APG6: Autophagy prote 38.5 2.4E+02 0.0051 28.7 9.7 27 128-154 61-87 (314)
125 PF09726 Macoilin: Transmembra 38.5 1.6E+02 0.0035 33.3 9.2 13 128-140 422-434 (697)
126 PHA01750 hypothetical protein 38.3 1.3E+02 0.0029 24.2 6.1 29 138-166 42-70 (75)
127 PF03904 DUF334: Domain of unk 38.2 2.7E+02 0.0058 27.5 9.5 41 130-170 42-82 (230)
128 PRK00846 hypothetical protein; 37.9 2.3E+02 0.005 23.3 8.1 49 129-177 11-59 (77)
129 PF07334 IFP_35_N: Interferon- 37.9 55 0.0012 26.9 4.1 18 134-151 3-20 (76)
130 PRK14127 cell division protein 37.8 96 0.0021 27.1 5.8 34 136-169 35-68 (109)
131 PF10146 zf-C4H2: Zinc finger- 37.2 2E+02 0.0044 28.1 8.7 55 132-186 33-87 (230)
132 PF12709 Kinetocho_Slk19: Cent 37.1 2.6E+02 0.0055 23.6 8.4 53 130-182 33-86 (87)
133 PF15188 CCDC-167: Coiled-coil 37.0 46 0.001 27.9 3.6 34 121-154 33-66 (85)
134 PF12329 TMF_DNA_bd: TATA elem 36.6 1.1E+02 0.0024 24.6 5.6 35 133-167 35-69 (74)
135 PRK03947 prefoldin subunit alp 36.6 1.5E+02 0.0032 26.0 7.1 47 128-174 91-137 (140)
136 PF11414 Suppressor_APC: Adeno 36.3 1.5E+02 0.0032 24.7 6.5 43 129-171 5-47 (84)
137 KOG4571 Activating transcripti 36.1 1.4E+02 0.0031 30.4 7.5 32 139-170 249-280 (294)
138 COG3159 Uncharacterized protei 36.0 69 0.0015 31.2 5.1 23 82-104 12-34 (218)
139 PF13874 Nup54: Nucleoporin co 35.9 2.2E+02 0.0048 25.3 8.1 61 131-192 44-104 (141)
140 PF06785 UPF0242: Uncharacteri 35.9 1.8E+02 0.0038 30.4 8.2 49 136-184 125-173 (401)
141 PF04136 Sec34: Sec34-like fam 35.7 1.9E+02 0.0042 26.3 7.8 58 129-186 12-69 (157)
142 PRK14160 heat shock protein Gr 35.5 3E+02 0.0065 26.7 9.4 41 129-169 59-99 (211)
143 PF07676 PD40: WD40-like Beta 35.4 15 0.00032 24.9 0.4 24 20-43 3-26 (39)
144 PF10186 Atg14: UV radiation r 35.3 2.7E+02 0.0059 26.7 9.3 19 247-265 194-212 (302)
145 COG1345 FliD Flagellar capping 35.2 1.7E+02 0.0036 31.8 8.4 56 127-185 425-480 (483)
146 PRK04406 hypothetical protein; 35.2 2.4E+02 0.0053 22.8 8.2 41 129-169 9-49 (75)
147 PRK00736 hypothetical protein; 35.1 2.3E+02 0.0049 22.4 8.1 44 129-172 3-46 (68)
148 PRK05892 nucleoside diphosphat 34.5 1.5E+02 0.0033 27.1 6.9 66 119-184 6-72 (158)
149 TIGR03752 conj_TIGR03752 integ 34.3 2E+02 0.0043 31.2 8.6 43 127-169 62-104 (472)
150 COG2433 Uncharacterized conser 34.2 2.1E+02 0.0046 32.0 9.0 43 127-169 425-467 (652)
151 TIGR02338 gimC_beta prefoldin, 34.1 1.8E+02 0.0039 24.7 7.0 41 129-169 65-105 (110)
152 PRK06664 fliD flagellar hook-a 33.9 1.7E+02 0.0036 33.0 8.4 52 129-183 605-656 (661)
153 PRK14143 heat shock protein Gr 33.9 3E+02 0.0065 27.1 9.2 41 129-169 65-105 (238)
154 COG4467 Regulator of replicati 33.5 1.4E+02 0.0031 26.2 6.1 42 129-170 13-54 (114)
155 PF02994 Transposase_22: L1 tr 33.5 64 0.0014 33.5 4.8 57 128-184 109-169 (370)
156 PRK14148 heat shock protein Gr 33.2 3.5E+02 0.0075 25.9 9.3 42 129-170 38-79 (195)
157 KOG4057 Uncharacterized conser 33.0 3.2E+02 0.007 25.5 8.6 60 128-187 16-75 (180)
158 PF08172 CASP_C: CASP C termin 32.8 1.5E+02 0.0033 29.2 7.1 37 129-165 84-120 (248)
159 PRK02793 phi X174 lysis protei 32.7 2.6E+02 0.0056 22.4 8.0 41 129-169 6-46 (72)
160 PF12308 Noelin-1: Neurogenesi 32.4 1.5E+02 0.0033 25.6 6.0 53 127-179 43-95 (101)
161 PF14662 CCDC155: Coiled-coil 32.2 2.9E+02 0.0063 26.6 8.5 15 138-152 95-109 (193)
162 COG4942 Membrane-bound metallo 32.1 2.9E+02 0.0063 29.6 9.3 56 129-184 71-126 (420)
163 PF14723 SSFA2_C: Sperm-specif 32.0 89 0.0019 29.5 5.0 22 132-153 146-167 (179)
164 PRK10803 tol-pal system protei 31.8 2.2E+02 0.0048 28.1 8.1 18 340-357 238-255 (263)
165 PF09726 Macoilin: Transmembra 31.6 2E+02 0.0044 32.6 8.6 52 136-187 543-601 (697)
166 PRK13729 conjugal transfer pil 31.6 1.5E+02 0.0032 32.2 7.2 46 130-175 75-120 (475)
167 PF09755 DUF2046: Uncharacteri 31.5 5.1E+02 0.011 26.7 10.6 50 122-171 18-67 (310)
168 PHA02562 46 endonuclease subun 31.1 2E+02 0.0043 30.6 8.2 55 139-193 359-419 (562)
169 PF04912 Dynamitin: Dynamitin 30.9 1.7E+02 0.0038 30.2 7.5 48 124-171 87-144 (388)
170 PF11853 DUF3373: Protein of u 30.7 47 0.001 36.0 3.4 24 131-155 25-48 (489)
171 PF09738 DUF2051: Double stran 30.7 3.2E+02 0.007 27.9 9.1 25 129-153 110-134 (302)
172 PF14817 HAUS5: HAUS augmin-li 30.6 2.3E+02 0.0049 31.9 8.7 52 125-176 80-131 (632)
173 smart00787 Spc7 Spc7 kinetocho 30.6 3.5E+02 0.0076 27.6 9.4 16 245-260 271-286 (312)
174 PF10018 Med4: Vitamin-D-recep 30.4 3.3E+02 0.0071 25.4 8.6 31 156-186 26-56 (188)
175 PRK09343 prefoldin subunit bet 30.4 2.3E+02 0.0051 24.7 7.1 38 130-167 70-107 (121)
176 PRK07737 fliD flagellar cappin 30.3 2.1E+02 0.0045 31.0 8.2 19 158-176 472-490 (501)
177 PRK15396 murein lipoprotein; P 29.9 2.7E+02 0.0059 22.9 6.9 47 125-171 26-72 (78)
178 PF07989 Microtub_assoc: Micro 29.7 3E+02 0.0066 22.2 8.2 28 128-155 4-31 (75)
179 PRK13182 racA polar chromosome 29.5 2E+02 0.0042 27.0 6.9 20 85-104 34-53 (175)
180 PF08912 Rho_Binding: Rho Bind 29.5 3.1E+02 0.0067 22.2 9.1 58 131-188 3-67 (69)
181 PF10226 DUF2216: Uncharacteri 29.4 3.4E+02 0.0073 26.2 8.4 24 129-152 53-76 (195)
182 PF02996 Prefoldin: Prefoldin 29.1 2E+02 0.0044 24.1 6.4 43 128-170 74-116 (120)
183 COG3167 PilO Tfp pilus assembl 29.1 2.8E+02 0.0061 26.8 7.8 59 129-187 47-111 (211)
184 PF04849 HAP1_N: HAP1 N-termin 29.0 3.3E+02 0.0072 27.9 8.9 55 134-188 230-284 (306)
185 PF10234 Cluap1: Clusterin-ass 29.0 1.9E+02 0.0041 29.0 7.1 65 129-193 181-252 (267)
186 COG5481 Uncharacterized conser 29.0 3E+02 0.0064 21.9 7.1 47 139-185 5-57 (67)
187 KOG2196 Nuclear porin [Nuclear 28.9 1.5E+02 0.0033 29.5 6.2 43 128-170 117-159 (254)
188 KOG3856 Uncharacterized conser 28.9 1.3E+02 0.0029 27.0 5.3 32 141-172 13-44 (135)
189 PF07888 CALCOCO1: Calcium bin 28.8 3.2E+02 0.007 30.2 9.3 7 48-54 77-83 (546)
190 PF07716 bZIP_2: Basic region 28.7 1E+02 0.0023 22.9 4.0 23 142-164 29-51 (54)
191 PF06216 RTBV_P46: Rice tungro 28.7 1.8E+02 0.0039 29.3 6.7 41 130-170 70-110 (389)
192 PRK08032 fliD flagellar cappin 28.3 2.4E+02 0.0052 30.1 8.2 30 140-169 408-437 (462)
193 PF06419 COG6: Conserved oligo 28.3 2.8E+02 0.006 30.8 8.9 60 128-187 49-108 (618)
194 TIGR00219 mreC rod shape-deter 28.3 1.8E+02 0.0038 29.1 6.8 22 132-153 67-88 (283)
195 COG4372 Uncharacterized protei 28.2 3.9E+02 0.0085 28.6 9.3 49 126-174 118-166 (499)
196 PF13747 DUF4164: Domain of un 28.2 3.5E+02 0.0076 22.5 8.4 49 127-175 35-83 (89)
197 KOG2751 Beclin-like protein [S 28.2 3.4E+02 0.0073 29.2 9.0 64 129-192 181-248 (447)
198 PF01920 Prefoldin_2: Prefoldi 28.1 2.7E+02 0.0058 22.6 6.9 41 129-169 60-100 (106)
199 KOG1103 Predicted coiled-coil 28.1 1.9E+02 0.0041 30.5 7.0 48 129-176 243-290 (561)
200 PF10212 TTKRSYEDQ: Predicted 28.1 2.6E+02 0.0055 30.8 8.3 19 130-148 461-479 (518)
201 KOG0996 Structural maintenance 28.0 2.5E+02 0.0055 33.8 8.6 60 128-187 546-611 (1293)
202 PF02403 Seryl_tRNA_N: Seryl-t 27.8 1.5E+02 0.0034 24.6 5.4 31 132-162 30-60 (108)
203 PF03962 Mnd1: Mnd1 family; I 27.8 4.5E+02 0.0097 24.7 9.0 61 124-184 103-167 (188)
204 cd00890 Prefoldin Prefoldin is 27.7 2.7E+02 0.0058 23.5 7.0 41 129-169 85-125 (129)
205 PF07889 DUF1664: Protein of u 27.6 4.5E+02 0.0097 23.5 8.8 60 125-187 37-96 (126)
206 COG5613 Uncharacterized conser 27.6 2.6E+02 0.0056 29.4 7.8 46 143-188 335-380 (400)
207 PF12777 MT: Microtubule-bindi 27.4 2.8E+02 0.006 28.3 8.2 45 130-174 234-278 (344)
208 PF05667 DUF812: Protein of un 27.4 3.6E+02 0.0078 30.1 9.5 60 130-189 327-392 (594)
209 KOG4010 Coiled-coil protein TP 27.3 1.9E+02 0.0041 27.8 6.3 37 132-168 45-81 (208)
210 PF06785 UPF0242: Uncharacteri 27.1 2.9E+02 0.0062 28.9 8.0 57 126-182 129-185 (401)
211 PRK00888 ftsB cell division pr 27.0 2E+02 0.0043 24.6 6.0 31 141-171 30-60 (105)
212 PF13815 Dzip-like_N: Iguana/D 26.9 2E+02 0.0044 24.8 6.1 43 133-175 68-110 (118)
213 PF04201 TPD52: Tumour protein 26.9 3.6E+02 0.0078 25.2 8.0 40 121-160 26-65 (162)
214 PF05266 DUF724: Protein of un 26.7 5.5E+02 0.012 24.3 9.8 8 69-76 81-88 (190)
215 PF10018 Med4: Vitamin-D-recep 26.6 3.5E+02 0.0076 25.2 8.1 50 129-179 14-63 (188)
216 PF05266 DUF724: Protein of un 26.3 3.7E+02 0.0081 25.4 8.2 15 130-144 130-144 (190)
217 PF09744 Jnk-SapK_ap_N: JNK_SA 26.3 4.9E+02 0.011 24.0 8.8 42 127-168 46-87 (158)
218 PF02388 FemAB: FemAB family; 26.2 2.7E+02 0.0059 29.0 8.0 55 130-184 241-298 (406)
219 PF03310 Cauli_DNA-bind: Cauli 26.1 1.8E+02 0.0039 26.0 5.6 78 127-210 9-90 (121)
220 PF04849 HAP1_N: HAP1 N-termin 25.9 3.4E+02 0.0073 27.9 8.3 60 128-187 164-245 (306)
221 KOG2264 Exostosin EXT1L [Signa 25.9 1.6E+02 0.0034 33.0 6.2 23 126-148 102-124 (907)
222 KOG0250 DNA repair protein RAD 25.7 3.3E+02 0.0072 32.5 9.0 43 126-168 396-438 (1074)
223 PF04012 PspA_IM30: PspA/IM30 25.7 5E+02 0.011 24.3 9.1 43 137-179 97-139 (221)
224 PF11853 DUF3373: Protein of u 25.4 65 0.0014 34.9 3.3 27 146-172 32-58 (489)
225 PF03961 DUF342: Protein of un 25.2 3.8E+02 0.0083 28.3 9.0 25 161-185 384-408 (451)
226 KOG2391 Vacuolar sorting prote 25.2 3.6E+02 0.0077 28.3 8.3 38 145-182 235-272 (365)
227 PRK14163 heat shock protein Gr 25.2 4.7E+02 0.01 25.5 8.8 35 128-169 44-78 (214)
228 PF13815 Dzip-like_N: Iguana/D 25.1 4E+02 0.0087 22.9 7.7 37 129-165 78-114 (118)
229 PRK14162 heat shock protein Gr 25.0 4.9E+02 0.011 24.8 8.8 19 247-265 119-137 (194)
230 PRK14158 heat shock protein Gr 25.0 5.6E+02 0.012 24.5 9.2 39 131-169 40-78 (194)
231 PF04899 MbeD_MobD: MbeD/MobD 24.9 3.7E+02 0.008 21.6 7.7 43 129-171 19-61 (70)
232 PF09304 Cortex-I_coil: Cortex 24.7 4.8E+02 0.01 22.9 9.0 35 134-168 33-67 (107)
233 KOG1760 Molecular chaperone Pr 24.6 2.4E+02 0.0053 25.4 6.1 38 132-169 82-119 (131)
234 COG3883 Uncharacterized protei 24.3 5.2E+02 0.011 26.0 9.1 29 129-157 64-92 (265)
235 PRK06342 transcription elongat 24.2 1.1E+02 0.0024 28.1 4.2 20 119-138 29-48 (160)
236 COG1730 GIM5 Predicted prefold 24.0 2.7E+02 0.0057 25.5 6.5 45 126-170 96-140 (145)
237 COG2433 Uncharacterized conser 24.0 4.4E+02 0.0096 29.7 9.2 29 125-153 437-465 (652)
238 PRK14157 heat shock protein Gr 23.8 4.6E+02 0.01 25.8 8.5 38 128-165 81-118 (227)
239 PRK14154 heat shock protein Gr 23.7 4.8E+02 0.01 25.3 8.5 34 128-161 56-89 (208)
240 PF10458 Val_tRNA-synt_C: Valy 23.7 3.5E+02 0.0075 20.9 7.6 25 129-153 2-26 (66)
241 PF11544 Spc42p: Spindle pole 23.7 4.2E+02 0.0091 21.9 7.5 37 129-165 17-53 (76)
242 PF00038 Filament: Intermediat 23.6 6E+02 0.013 24.9 9.6 16 157-172 235-250 (312)
243 PF07798 DUF1640: Protein of u 23.6 5E+02 0.011 23.8 8.5 14 64-77 6-19 (177)
244 PRK14139 heat shock protein Gr 23.5 5.5E+02 0.012 24.3 8.7 19 247-265 110-128 (185)
245 KOG2185 Predicted RNA-processi 23.4 2.5E+02 0.0053 30.2 6.9 56 126-185 415-470 (486)
246 PF09787 Golgin_A5: Golgin sub 23.4 3E+02 0.0066 29.7 7.9 38 132-169 275-312 (511)
247 PF05064 Nsp1_C: Nsp1-like C-t 23.3 46 0.001 28.9 1.5 37 139-182 58-94 (116)
248 PRK13922 rod shape-determining 23.0 2.1E+02 0.0047 27.8 6.2 13 137-149 75-87 (276)
249 PF15456 Uds1: Up-regulated Du 22.9 3.7E+02 0.008 23.8 7.1 43 130-187 21-63 (124)
250 PF14584 DUF4446: Protein of u 22.9 2.9E+02 0.0063 25.3 6.6 62 131-192 23-86 (151)
251 KOG2391 Vacuolar sorting prote 22.8 4.7E+02 0.01 27.4 8.6 7 258-264 346-352 (365)
252 PF13094 CENP-Q: CENP-Q, a CEN 22.8 3.2E+02 0.007 24.5 6.9 61 128-188 24-84 (160)
253 PF13942 Lipoprotein_20: YfhG 22.6 4.2E+02 0.0091 25.2 7.6 33 138-170 123-155 (179)
254 PF06160 EzrA: Septation ring 22.4 2.4E+02 0.0051 30.9 6.9 85 127-211 347-438 (560)
255 PRK14145 heat shock protein Gr 22.4 6.8E+02 0.015 24.0 9.2 42 129-170 43-84 (196)
256 COG5613 Uncharacterized conser 22.4 5.2E+02 0.011 27.3 8.9 58 130-187 329-386 (400)
257 TIGR01843 type_I_hlyD type I s 22.3 4.8E+02 0.01 26.3 8.8 33 136-168 142-174 (423)
258 KOG0250 DNA repair protein RAD 22.2 4.6E+02 0.0099 31.4 9.3 58 128-185 665-722 (1074)
259 KOG4571 Activating transcripti 22.2 4.5E+02 0.0098 26.8 8.3 58 130-187 224-290 (294)
260 PF08647 BRE1: BRE1 E3 ubiquit 22.0 3E+02 0.0065 23.0 6.1 51 134-184 27-80 (96)
261 PF14077 WD40_alt: Alternative 22.0 1.1E+02 0.0024 23.0 2.9 29 161-189 20-48 (48)
262 KOG0977 Nuclear envelope prote 21.8 3.1E+02 0.0067 30.4 7.5 42 128-169 152-193 (546)
263 PRK14155 heat shock protein Gr 21.7 5.6E+02 0.012 24.7 8.6 35 126-160 15-49 (208)
264 TIGR02209 ftsL_broad cell divi 21.7 3E+02 0.0066 21.7 5.8 30 135-164 28-57 (85)
265 PF04888 SseC: Secretion syste 21.6 4.1E+02 0.0088 26.3 8.0 63 131-193 237-299 (306)
266 PF09742 Dymeclin: Dyggve-Melc 21.5 66 0.0014 36.0 2.6 19 336-354 28-49 (678)
267 PF14193 DUF4315: Domain of un 21.3 3.7E+02 0.008 22.3 6.3 51 144-196 7-57 (83)
268 PRK10722 hypothetical protein; 21.3 3.3E+02 0.0072 27.1 7.0 30 144-173 175-204 (247)
269 PF10267 Tmemb_cc2: Predicted 21.2 3.5E+02 0.0076 28.7 7.6 54 127-180 272-327 (395)
270 TIGR00293 prefoldin, archaeal 21.1 3.5E+02 0.0077 23.1 6.5 42 128-169 83-124 (126)
271 PRK08724 fliD flagellar cappin 20.9 3.8E+02 0.0083 30.4 8.2 30 140-169 619-648 (673)
272 PRK14144 heat shock protein Gr 20.7 7.5E+02 0.016 23.8 9.1 35 123-157 44-78 (199)
273 KOG0288 WD40 repeat protein Ti 20.6 3.2E+02 0.0069 29.3 7.1 21 129-149 53-73 (459)
274 KOG2077 JNK/SAPK-associated pr 20.5 2.5E+02 0.0054 31.4 6.4 43 128-170 326-368 (832)
275 PRK14140 heat shock protein Gr 20.4 7.5E+02 0.016 23.6 9.0 38 132-169 38-75 (191)
276 KOG3433 Protein involved in me 20.2 5.5E+02 0.012 24.7 7.9 55 133-187 76-130 (203)
277 TIGR02977 phageshock_pspA phag 20.1 7.1E+02 0.015 23.6 9.0 42 141-182 102-143 (219)
278 PRK03947 prefoldin subunit alp 20.1 3.4E+02 0.0074 23.7 6.3 43 126-168 96-138 (140)
279 PF10481 CENP-F_N: Cenp-F N-te 20.0 6.7E+02 0.014 25.6 8.8 62 125-186 68-129 (307)
280 PRK03918 chromosome segregatio 20.0 3.9E+02 0.0085 30.2 8.3 7 12-18 37-43 (880)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=2.5e-43 Score=346.78 Aligned_cols=194 Identities=43% Similarity=0.721 Sum_probs=171.4
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec--CCCce
Q 015655 6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD--PEQWE 83 (403)
Q Consensus 6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~--~~~~e 83 (403)
+..+++++|+.|||.||+||++++||+|+++|++|||||+..|++.+||+||||+||+|||||||+|||||++ ++.|+
T Consensus 7 ~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wE 86 (304)
T KOG0627|consen 7 SEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWE 86 (304)
T ss_pred cccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCcee
Confidence 3455899999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred eccCccccCcccccccccccCCCCCCCCC--CCCCCCCCCc-----hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 84 FANEDFVRGQPERLKNIHRRKPVHSHSNQ--NLHGQGTPLT-----ESERQGLKDDIERLKKEKEILLLELQRHEQERQG 156 (403)
Q Consensus 84 F~h~~F~Rg~~~lL~~IkRkkp~~s~s~~--~~~~q~~~l~-----~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~ 156 (403)
|+|++|+||+++||++|+||++.++.... ........+. ...+..+..++.+|++++..|+.++.+|++++..
T Consensus 87 F~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~ 166 (304)
T KOG0627|consen 87 FSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDA 166 (304)
T ss_pred ecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999987655431 1110001111 1124457899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhccccc
Q 015655 157 FESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHL 199 (403)
Q Consensus 157 l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~~l~q~~ 199 (403)
++.+++.+.+++...+.+|+.++.|+++++..|+|..++.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 167 LRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 9999999999999999999999999999999999999877643
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.8e-34 Score=244.68 Aligned_cols=94 Identities=69% Similarity=1.287 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeecC----------
Q 015655 10 SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP---------- 79 (403)
Q Consensus 10 ~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~~---------- 79 (403)
.+|.|+.|||+||+|+++++||+|+++|++|+|.|+..|.+.|||+||||+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCceeccCccccCccccccccccc
Q 015655 80 -EQWEFANEDFVRGQPERLKNIHRR 103 (403)
Q Consensus 80 -~~~eF~h~~F~Rg~~~lL~~IkRk 103 (403)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 679999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=1.4e-34 Score=243.71 Aligned_cols=93 Identities=52% Similarity=1.021 Sum_probs=81.4
Q ss_pred cHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeecCC---------Cce
Q 015655 13 PFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPE---------QWE 83 (403)
Q Consensus 13 ~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~~~---------~~e 83 (403)
.||.|||+||+||.+++||+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 49999999999999999999999999999999999999999999999999999999999999999643 389
Q ss_pred eccCccccCcccccccccccCC
Q 015655 84 FANEDFVRGQPERLKNIHRRKP 105 (403)
Q Consensus 84 F~h~~F~Rg~~~lL~~IkRkkp 105 (403)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999874
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=1.1e-33 Score=276.24 Aligned_cols=101 Identities=40% Similarity=0.808 Sum_probs=94.2
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec-C-----
Q 015655 6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-P----- 79 (403)
Q Consensus 6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~-~----- 79 (403)
+....++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+|||||+. .
T Consensus 5 ~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~ 84 (282)
T COG5169 5 SRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRS 84 (282)
T ss_pred cCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCccccc
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999996 2
Q ss_pred ----CCceeccCccccCcccccccccccCCC
Q 015655 80 ----EQWEFANEDFVRGQPERLKNIHRRKPV 106 (403)
Q Consensus 80 ----~~~eF~h~~F~Rg~~~lL~~IkRkkp~ 106 (403)
..|+|.|++|++|..++|+.|+|++..
T Consensus 85 ~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~ 115 (282)
T COG5169 85 YYNENVWEFGNKNFQLGMIELLKKIKRKKAP 115 (282)
T ss_pred ccchhheeecCchhccCcHHHHHHhhhhhcC
Confidence 349999999999999999999997653
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.36 E-value=0.0038 Score=51.71 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred HHHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhccc-ccccCcCCchhhhhcccccc
Q 015655 15 LAKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLL-PKYFKHNNFSSFIRQLNTYG 73 (403)
Q Consensus 15 l~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VL-PkyFkh~nfsSFvRQLN~YG 73 (403)
..=|.++|+|+++.++|+|.+ .|..|.|.|++.+++.=- -+--...+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 344678899999999999998 999999999999987311 12234467899999998774
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=92.39 E-value=0.092 Score=43.88 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=43.6
Q ss_pred HHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015655 16 AKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG 73 (403)
Q Consensus 16 ~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG 73 (403)
.=|.++|.||++.++|+|.+ ++.-|.+.|+++.++.=-. +-=...||..+-|-|..|-
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 34678999999999999998 6778999999887763111 2123467888888888774
No 7
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.88 E-value=0.98 Score=36.49 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+.-+|+.||..+..|.+|.+.+++....++.+-..|++....-+.+.+.++
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999998888888877665444444443
No 8
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.25 E-value=3.4 Score=40.12 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=50.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.+.+.+..++..|+++...|.....+++......+.++..|++++..++...+.|.-+|.+++.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777888888888888888888888888887776
No 9
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.26 E-value=3.9 Score=33.70 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~ 180 (403)
|.-+|+.||..+..|..|++.++.....+..+.+.|++....-+.+.+.++.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888886666666666666666555544444444444
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.15 E-value=5.8 Score=34.99 Aligned_cols=59 Identities=20% Similarity=0.426 Sum_probs=39.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGF---ESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l---~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
.|...+..++.+|...+..+..||.++-..+..+ ..++..|+..+..++.+-+.++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777777777888888777766433 4456666677777777666666544
No 11
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=85.85 E-value=0.66 Score=43.51 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhccccc-ccCcCCchhhhhccccc
Q 015655 9 NSLPPFLAKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLPK-YFKHNNFSSFIRQLNTY 72 (403)
Q Consensus 9 ~~~~~Fl~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLPk-yFkh~nfsSFvRQLN~Y 72 (403)
++.-.-..=|-++|.|+++.++|+|.. +|--|.+.||++-++.=--+ -=...||.-.-|-|..|
T Consensus 66 sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 66 SGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred CchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 334445566778899999999999998 78789999999988742221 12246777777777665
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.51 E-value=10 Score=30.65 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
.|..|+.++..|..+-..+.+++..+..+.+.|++.....+.+...++.-|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444443333333444444444444444444444444444433
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.55 E-value=7.7 Score=31.28 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
|+..|..+=.....|..|+..|+.++..+..+...|++......+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555555554444444433
No 14
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.10 E-value=8.5 Score=34.90 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=48.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
..+..+|..+......|..||..++.+...+...++.+++|+...+..+..+.+.|..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44777888888888888899999999999999999999999988888877777666554
No 15
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.79 E-value=6.3 Score=29.01 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
++.+-+.||.....|..+..+|.++++.+..++..|...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566778888888888888888888888888888877664
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.86 E-value=7.5 Score=43.77 Aligned_cols=62 Identities=31% Similarity=0.453 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKP 189 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P 189 (403)
.+...+..|+.....-..+|..++++...+......|.+|+..+..+|..++.-+.++++..
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677888888888889999999999998999999999999999999999888877743
No 17
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=79.65 E-value=22 Score=28.09 Aligned_cols=57 Identities=9% Similarity=0.190 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.+..++.+++.....+...+..+++.....+.++..+.++|..++..++=+..++..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888999999999999999999999999998877766665554
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.26 E-value=15 Score=34.08 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
...++.++..|..|+..|++++..|+.++..|.+++..++..=+.|+..|-++-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888888877777777776643
No 19
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.15 E-value=19 Score=28.98 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=48.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
...|..|.+.|-+....+..-+.+|+.+...++.++..+..++...+.....+-..+.
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888888888888999999999999999999999999888877666665554
No 20
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=77.63 E-value=11 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=0.0
Q ss_pred ccCccccCcccccccccc
Q 015655 85 ANEDFVRGQPERLKNIHR 102 (403)
Q Consensus 85 ~h~~F~Rg~~~lL~~IkR 102 (403)
.||.|-..+++||..|+=
T Consensus 17 ~~PdFf~~~~~ll~~l~~ 34 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRL 34 (225)
T ss_dssp ------------------
T ss_pred hCcHHHHhCHHHHHHcCC
Confidence 799999999999999863
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=76.89 E-value=11 Score=32.67 Aligned_cols=46 Identities=30% Similarity=0.365 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 173 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq 173 (403)
.++..|..|-.+...|...+..+-.++..|..+...|+++|...++
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777777778888888888888888877654
No 22
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=76.79 E-value=33 Score=28.34 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015655 140 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188 (403)
Q Consensus 140 ~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~ 188 (403)
+..|..++..|+.....|..++...++....++...+-+-.++..+|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666677777666666666666666666666653
No 23
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.70 E-value=18 Score=36.72 Aligned_cols=52 Identities=27% Similarity=0.571 Sum_probs=40.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
.+...+..++..|+.+...|..||..++++...+..++..+++....+++..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888889999999999999999988888888888887766665433
No 24
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.35 E-value=15 Score=40.31 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGL 191 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f 191 (403)
--+..|+..+..-.++|+.++++...++.....|.+|+.....+|..++..+.++++.++-
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 3445566666777788888888888888888999999999999999999999999998754
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.94 E-value=38 Score=26.98 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
+..+|+.|=.-...|..|-..|+++...+..+-..|.++......+...|++-|..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455544444444444444444444444455555555555555555666665544
No 26
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=75.80 E-value=6.9 Score=34.73 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015655 142 ILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188 (403)
Q Consensus 142 ~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~ 188 (403)
+...||..+.+.+..+...+.+|.+++...++.+..|.++-++++++
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD 49 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 34566666666677777777777777777777777777777777775
No 27
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.53 E-value=19 Score=28.33 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=31.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
+.+..++.+.|..+..+...|+.....+..+..+|..|++++..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777777777666543
No 28
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.34 E-value=16 Score=31.82 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=34.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
..++..|..|-.+...|...|..+-.++..|..+.+.|+++|...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777777777777777777778888888888888888765
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.04 E-value=26 Score=29.37 Aligned_cols=64 Identities=19% Similarity=0.405 Sum_probs=46.3
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
+.++..+..+++.|+.+++.+..++..+... ...+..++..+++++..++.....+-.-|..++
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999988877663 456666777777777777766666655555443
No 30
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.27 E-value=46 Score=32.27 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
+.++-..|..+...|..|+..++..+..++.++...++++..+++++..+-..-..+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555554444433
No 31
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.89 E-value=49 Score=29.48 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=28.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
..+...+.++..+...|...+.+|+.+...++.++..+..+...++...
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666555555555444433
No 32
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.47 E-value=50 Score=26.29 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
+....++|+.++..|..++..++.+...+...+..-+.|+..|-.+
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666665555555555555555555544443
No 33
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.94 E-value=3.9 Score=38.12 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
|+.|| .+++.|..++|||+.+..+|+.++ ++++++..
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 45555 456777788888888777777777 66666653
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=64.65 E-value=17 Score=31.17 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 167 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~er 167 (403)
....++++...+..|+.++++++..|..++..|+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 455666777777777777777777777777777654
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.73 E-value=32 Score=31.27 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=29.8
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 015655 122 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQM--QLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 122 ~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv--q~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
++.+...|..+|..|+.+...|..++..++.+...+...+ ..|...+..++.....|-.-|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554444444332 23334444444444444444444
No 36
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.26 E-value=72 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 178 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqm 178 (403)
+|++|-.+...|...+..|..+...+...++..++.-.+.-+|...+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445455555555555555555555555555555444444444443
No 37
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=62.04 E-value=91 Score=25.84 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL-------LRERFQLMEQRQQ 176 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~-------L~erl~~~Eq~Qq 176 (403)
.|+.+|...=.....|..||..|+.++..+..+++. |.+....+.+.|+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356666666666777888888888888888887776 5555555544333
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.98 E-value=41 Score=32.25 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=17.6
Q ss_pred ccceeec--CCCceeccCccccCcccccccc
Q 015655 72 YGFRKVD--PEQWEFANEDFVRGQPERLKNI 100 (403)
Q Consensus 72 YGF~Kv~--~~~~eF~h~~F~Rg~~~lL~~I 100 (403)
.||.+|. .+.--|.|..|....|..-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 4677774 3345677777776666654444
No 39
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.94 E-value=41 Score=36.28 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=26.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 163 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~ 163 (403)
.++..++..|.+++..|..|..+|++....+..|++.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567778888888888888888887766666666543
No 40
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.63 E-value=74 Score=28.91 Aligned_cols=53 Identities=28% Similarity=0.324 Sum_probs=27.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 178 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqm 178 (403)
+..+..++..|+.++..|..+++..+.+...++.....+...|...|+...+|
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444443333
No 41
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.90 E-value=45 Score=30.33 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=34.6
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHEQE--RQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq--qq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+.+...+..++..|+.+...|..||..|... ...+..++..|++.+..++.+...+-
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888887766554 23444455555555555554444443
No 42
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.51 E-value=59 Score=32.04 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 140 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 140 ~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
+..|..+|..|+++...|..++..+.-+|+.+.++|+.+..=|-+.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777778888888888888888888887776644
No 43
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.27 E-value=33 Score=30.94 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
..|.+++..|++||.+|++++..+..++.+++.++. ++..|...
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e-------~l~~~~~~ 120 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE-------ALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhh
Confidence 345566666777777777766666666666665553 55555443
No 44
>PRK11637 AmiB activator; Provisional
Probab=60.13 E-value=53 Score=34.30 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
+..+|..+......+..+|..++++...++.++..+++++...+....+.+..+.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555554444444444444
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.03 E-value=81 Score=29.44 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 147 LQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 147 L~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
++.++.++..+..++..+++++..++...+.++.=+.
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555566666666666666665443
No 46
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.59 E-value=46 Score=33.02 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=37.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL-----MEQRQQKMVSF 181 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~-----~Eq~Qqqml~f 181 (403)
.+|+.+|..|..++..|..|-..|+.+++.|-.+-+.|..+|.. ++-+|+++++.
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 34778888888888888888888888887777776666655542 33455555543
No 47
>PRK00295 hypothetical protein; Provisional
Probab=59.03 E-value=54 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
|+..+.-+..-...|...|.++.++...++.+++.|.+|+..
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343344444555555555555555555556655555543
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.02 E-value=62 Score=31.94 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=42.7
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 122 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQK 177 (403)
Q Consensus 122 ~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqq 177 (403)
+..+...|..++..+++....|..||..+...++.++.++..+++++..++..--.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888888888887777654333
No 49
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.73 E-value=91 Score=25.65 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFES-------QMQLLRERFQLMEQRQQKM 178 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~-------qvq~L~erl~~~Eq~Qqqm 178 (403)
++.+|.+-..+..|+...+.+...++. +|+.+++.+..+|..+.+|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444443333332 3444555555555555444
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.42 E-value=64 Score=32.64 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
+..++.+...+..+|...+++...++.++..+.+.+.....+.+.+..-+.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444443333
No 51
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.16 E-value=50 Score=34.75 Aligned_cols=74 Identities=15% Similarity=0.264 Sum_probs=51.9
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchhhcc
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHEQE----RQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ-KPGLESNFG 196 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq----qq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq-~P~f~~~l~ 196 (403)
+.++..+..+++.|+.+++.+..++..+... .+.+..++..+++++...+...+.+-.-+..++. =|-+++.-+
T Consensus 36 d~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3456788999999999999999998764332 3456667788888888888777777665555443 344444433
No 52
>PRK00736 hypothetical protein; Provisional
Probab=57.61 E-value=53 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
|+..+.-+..-...|...|.++.++...+..+++.|.+|+..
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555566666666665543
No 53
>smart00338 BRLZ basic region leucin zipper.
Probab=57.01 E-value=29 Score=26.64 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqq 153 (403)
|+.++..|..++..|..++..|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 54
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=56.87 E-value=65 Score=28.52 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=33.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+..+..++..|-+.+-.+..+|..++.+....-.+++.|+.++...+++++.+.
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666667777777777777777777777777776666654
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.81 E-value=83 Score=28.82 Aligned_cols=60 Identities=15% Similarity=0.319 Sum_probs=46.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
..+..+++.+.+....+..++..++...+......+..++++...+...+.+..-+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888877777777777887777777777776666655
No 56
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.78 E-value=86 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
++.+|..--.-...|..|+..|+.++..+.++++.+.......+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 44444444444556677777777777777666665554444333
No 57
>PRK11637 AmiB activator; Provisional
Probab=55.95 E-value=66 Score=33.61 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
+..+|..|.++...+..+|..++++...++.++..+++++...+.+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555543
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.48 E-value=45 Score=26.35 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
|+..+.-+..-...|...|.++.++...++.+++.|.+|+..+
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555555555555555555555555443
No 59
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.15 E-value=70 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRH--EQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rl--rqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+.+.+....+-...+..+|..| +++...+...|..|+.++..++.+.+.|-
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333344444444444444 44444444444444444444444444443
No 60
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.91 E-value=64 Score=32.35 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLES 193 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~ 193 (403)
|..+|+.+......+..++.+++++...++.++..++++|. .++.++.-=+|.|+..|-..
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~----~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV----ERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCChh
Confidence 44444444444444555555555555555555555555554 33566666666666655443
No 61
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.62 E-value=49 Score=34.88 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=52.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchhhcc
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ-KPGLESNFG 196 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq-~P~f~~~l~ 196 (403)
+.++..+..+++.|+++++.+..++..++.. .+.+..++..|++++..++.....+-.-+...+. =|-+++.-+
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 4466788999999999999999999764433 2356677788888888888777777666665443 244544434
No 62
>PLN02678 seryl-tRNA synthetase
Probab=53.55 E-value=61 Score=34.67 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=50.6
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhhcc
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHE---QERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK-PGLESNFG 196 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlr---qqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~-P~f~~~l~ 196 (403)
+.++..+..+++.|+.+++.+..++..++ .....+..+++.|++++..++...+.+-.-|..++.. |-+.+.-|
T Consensus 39 d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 39 DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34667889999999999999999886533 2234555667777888887777777776666665532 44444433
No 63
>PRK04406 hypothetical protein; Provisional
Probab=53.20 E-value=63 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 140 KEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 140 ~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
...|...|.++.++...+..+++.|.+|+
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444444444444444444443
No 64
>PRK04325 hypothetical protein; Provisional
Probab=52.63 E-value=67 Score=25.88 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
..|...|.++.++...++.+++.|.+|+
T Consensus 26 e~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 26 DGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333344444444444433
No 65
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=52.47 E-value=1.2e+02 Score=29.27 Aligned_cols=61 Identities=26% Similarity=0.228 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhcCC
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR------------------ERFQLMEQRQQKMVSFVGRALQKP 189 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~------------------erl~~~Eq~Qqqml~fL~~vlq~P 189 (403)
+..+.+.|...+..|..+++.++++++.+..+-+.|. ..-+..++.|+++...+..++=+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~Lwde 114 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQ 114 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888888888777766533332 222233456677777777766554
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.79 E-value=96 Score=30.57 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
....++..+++....|..+|..++..+..++.++..++.++...-
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 356677777777778888888888777777777777776665433
No 67
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=51.64 E-value=40 Score=30.87 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=42.6
Q ss_pred hhhchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 125 ERQGLKDDIERLKKEKEILL-----LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~-----~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
+...+..|+.+|++|++.+. +.-.|++.+...++.+++.+.+.+.........++..+..++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888887776653 4456677777778888888888887777777888877777665
No 68
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=51.63 E-value=72 Score=30.31 Aligned_cols=56 Identities=9% Similarity=0.302 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
++..|++|..-...+...|.....+.-.+...+..|+++|..++.+-.+|+..|-+
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777555555555555555566778888999999999999988888888774
No 69
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.49 E-value=1.1e+02 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
.|..+|..|......|..++..++.+.+....+-....+||..+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666666666777777777777654
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.35 E-value=79 Score=30.36 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015655 150 HEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 150 lrqqqq~l~~qvq~L~erl~ 169 (403)
|+.+++.+..+++.++.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.87 E-value=75 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 139 EKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 139 d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
-...|...|.++.++...+..++..|.+|+.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 72
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.81 E-value=64 Score=29.81 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 015655 164 LRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 164 L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
|+..+..++.++.+|+..+..++
T Consensus 129 l~~e~~~l~er~~e~l~~~~e~v 151 (158)
T PF09744_consen 129 LKKEYNRLHERERELLRKLKEHV 151 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666655544
No 73
>PRK00846 hypothetical protein; Provisional
Probab=50.73 E-value=78 Score=25.99 Aligned_cols=30 Identities=13% Similarity=-0.029 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
..|...|.++.++...+..++..|.+||..
T Consensus 30 e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 30 TELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 74
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.68 E-value=67 Score=33.35 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=25.5
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 122 TESERQGLKDDIERLKKEKEILLLELQRHEQER 154 (403)
Q Consensus 122 ~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqq 154 (403)
+-.|..+|..|-.+||++++.|..||.+|+.+.
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344667788888889999998888888885543
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.46 E-value=93 Score=33.17 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME---QRQQKMVSFVGRALQ 187 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E---q~Qqqml~fL~~vlq 187 (403)
+...|+.+|..++.+...+..+|....-..+.+..++..+..++...+ ..|+..+.-+..+++
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777776666666666666666665544433 345555555554444
No 76
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=50.15 E-value=1e+02 Score=29.01 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFE 158 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~ 158 (403)
.+..+|..|+.++..|..++..++.....++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444443
No 77
>PF14282 FlxA: FlxA-like protein
Probab=50.09 E-value=1.1e+02 Score=26.02 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQE----RQGFESQMQLLRERFQLMEQRQQKM 178 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqq----qq~l~~qvq~L~erl~~~Eq~Qqqm 178 (403)
...|..|++.+..|..+|..|... -..-..+++.|..+|..++....++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777766651 1222344444444444444433333
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.07 E-value=1e+02 Score=24.35 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 176 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qq 176 (403)
+++.|..|.-....+..-|..|.+.....+.++..|++++..+..+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555555555555555544444555555555544444333
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.97 E-value=1.5e+02 Score=26.37 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
.+..++.+|+.....|..++..++++....+.+...+...+...
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 80
>PRK02119 hypothetical protein; Provisional
Probab=49.89 E-value=78 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
..|...|.++.++...+..++..|.+|+
T Consensus 26 e~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 26 EELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444433
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.44 E-value=1.1e+02 Score=26.38 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
+..+|..||.....|..|-++|+-+++.+..++..+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.43 E-value=67 Score=35.31 Aligned_cols=49 Identities=29% Similarity=0.494 Sum_probs=36.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQE-------RQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqq-------qq~l~~qvq~L~erl~~~Eq~Q 175 (403)
..+++++..||.++..|..+|.+++.+ ...++.++|.|.++|..+.+..
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h 220 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIH 220 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 347788888888888888888887753 2445677888888888887533
No 83
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.24 E-value=90 Score=25.82 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=37.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.++..|..+|..|+.....|...+...+.++..|..+-+.|.+=+.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999888888888777777765554
No 84
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.04 E-value=80 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQL--LRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~--L~erl~~~Eq~Qqqml~fL~~v 185 (403)
.+|.-.|+.++..|.+|...|+.+...++.++.. +.++.+-++..-..++..+-++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888877765 5666666665555555555553
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.89 E-value=69 Score=24.80 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 157 FESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 157 l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
++.+.+.+++.+..+++..+.++...-
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555566665433
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.96 E-value=75 Score=31.35 Aligned_cols=47 Identities=34% Similarity=0.470 Sum_probs=27.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 173 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq 173 (403)
..+..+++++++....+..++..++.+...++.+++.+++|+...+.
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666666666655554443
No 87
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.43 E-value=1.3e+02 Score=23.27 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 145 LELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 145 ~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
..+..++.+++.+...+..+.+.+
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 88
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.36 E-value=1.3e+02 Score=30.26 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
....|...+.+...+..||.+.+++.+.+..++..++.||..++.+-
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677777778888888888888888888888888877643
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.34 E-value=1.2e+02 Score=30.93 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
.++|.+...+..++...+.+...++.+++.+..++.....+...+..-++
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343344444444444444444444455555444444444444443333
No 90
>PRK04325 hypothetical protein; Provisional
Probab=46.88 E-value=1.5e+02 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
+++.|..|.-.......-|..|.+.....+.++..|+.+++.+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555555555555555555555555555554443
No 91
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.66 E-value=98 Score=26.02 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
...-+..|......|..++.++..+...+..++..++.+|..+.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777788888888888888888888888888888887653
No 92
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.10 E-value=1.7e+02 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 166 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~e 166 (403)
..+++.++.....+..|+..+++.......+++.++.
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 165 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.98 E-value=1.4e+02 Score=30.22 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=4.1
Q ss_pred ccccccc
Q 015655 68 QLNTYGF 74 (403)
Q Consensus 68 QLN~YGF 74 (403)
+|.+|.|
T Consensus 69 ~Lely~~ 75 (325)
T PF08317_consen 69 MLELYQF 75 (325)
T ss_pred HHHHHHH
Confidence 4555666
No 94
>PLN02320 seryl-tRNA synthetase
Probab=45.34 E-value=91 Score=33.96 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred eccCccccCccccc-ccccccCCCCCCCCCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 015655 84 FANEDFVRGQPERL-KNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQ--ERQGFESQ 160 (403)
Q Consensus 84 F~h~~F~Rg~~~lL-~~IkRkkp~~s~s~~~~~~q~~~l~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrq--qqq~l~~q 160 (403)
.-.-.|.|.+++.+ .+|++|. .. .. .. .-.-.+.++..+..+++.|+.+++.+..++..... +.+.+..+
T Consensus 66 mlD~k~ir~n~~~v~~~l~~R~-~~-~~---vd--~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~ 138 (502)
T PLN02320 66 AIDFKWIRDNKEAVAINIRNRN-SN-AN---LE--LVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEE 138 (502)
T ss_pred ccCHHHHHhCHHHHHHHHHhcC-CC-cC---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Confidence 33456778888764 4555543 11 00 00 00012345677888999999999988888754111 23445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchhhcc
Q 015655 161 MQLLRERFQLMEQRQQKMVSFVGRAL-QKPGLESNFG 196 (403)
Q Consensus 161 vq~L~erl~~~Eq~Qqqml~fL~~vl-q~P~f~~~l~ 196 (403)
+..|++++..+|...+.+-.-|..++ .=|-+.+.-+
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 66677777777666666655444433 2244444433
No 95
>PRK15396 murein lipoprotein; Provisional
Probab=45.15 E-value=1.7e+02 Score=24.10 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+++.|..+...|..++..+.+..+.+...++.-++.-.+.-+|...+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555554444444444443
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.02 E-value=1.3e+02 Score=29.86 Aligned_cols=58 Identities=31% Similarity=0.368 Sum_probs=34.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
..+..+++.+.+++..|..|+.+++-++...+.++..|+-....++..-+.+..-+.+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~ 195 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYD 195 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 3455566667777777777777766666666666666555555554444444433333
No 97
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.58 E-value=1.2e+02 Score=23.14 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqq 153 (403)
|+.++..|..++..|..++..|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 98
>PRK02119 hypothetical protein; Provisional
Probab=44.41 E-value=1.7e+02 Score=23.57 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+++.|..|.-.......-|..|.......+.++..|+.++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444444444444444444444443
No 99
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.36 E-value=1.2e+02 Score=32.86 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 138 KEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 138 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
.....|..+|..++++.+.+..+.+.++++|..++...+.+-.-+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666655555556666666666666666655555553
No 100
>smart00338 BRLZ basic region leucin zipper.
Probab=44.15 E-value=1e+02 Score=23.57 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
+..|......|..+...|+.+...+..++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444444444444433333333333333
No 101
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=43.95 E-value=72 Score=29.76 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
|-+.|+.+...+..||+.|+|-...-+.++..|+.+|
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3345555666666777777777666666777777664
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.79 E-value=70 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
+..++.+...|..++..+++++..++.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555544
No 103
>PF14282 FlxA: FlxA-like protein
Probab=42.79 E-value=1.9e+02 Score=24.65 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=39.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 123 ESERQGLKDDIERLKKEKEILLL----ELQRHEQERQGFESQMQLLRERFQLMEQRQQK 177 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~----EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqq 177 (403)
+.....|..+|..|+.....|.. .-..-+++.+.|..|++.|+.+|..++..+.+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888877776 12334566778888888888888866655443
No 104
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.62 E-value=1.5e+02 Score=27.65 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
+..++..|+.....|..+|......++.+..++.+|.-.+..+|.+..++-
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555544443
No 105
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.42 E-value=1.6e+02 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 142 ILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 142 ~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.+..++++|......|..++-....|....+..+..+..-|..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 106
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.24 E-value=1.4e+02 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 166 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~e 166 (403)
++++|+.++..+...+.+-+++.+.|..|..+++.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~kn 36 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKN 36 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777777777666555543
No 107
>PRK10963 hypothetical protein; Provisional
Probab=42.17 E-value=1.1e+02 Score=29.43 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.9
Q ss_pred ccCccccCcccccccccc
Q 015655 85 ANEDFVRGQPERLKNIHR 102 (403)
Q Consensus 85 ~h~~F~Rg~~~lL~~IkR 102 (403)
.||+|--.+++||..|+=
T Consensus 14 ~~PdFf~~h~~Ll~~L~l 31 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRV 31 (223)
T ss_pred HCchHHhhCHHHHHhccC
Confidence 699999999999997753
No 108
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.02 E-value=1.7e+02 Score=25.48 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
+..++..||.....|..|-++|+-++..|...+..+
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444433
No 109
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.82 E-value=1.2e+02 Score=32.66 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=44.7
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKD-DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 129 l~~-eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
|.+ +++.+|.....+..|+..+++++.+++...+.++.++.....++++..+-|..
T Consensus 344 ~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 344 YEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 78888888888888888889999999999999998888887777776655544
No 110
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.78 E-value=77 Score=23.32 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGF 157 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l 157 (403)
|...-+.|+.+...|..|...|+.+...+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 111
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=1.5e+02 Score=27.08 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
.+..-|+.|++....|...+..+.+..+.+..++..+...++...+++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777766666666666666665554443
No 112
>PRK00295 hypothetical protein; Provisional
Probab=41.61 E-value=1.8e+02 Score=23.07 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 173 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq 173 (403)
+++.|..|.-.......-|..|.......+.++..|+.++..+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555555555555555555555544433
No 113
>PRK09039 hypothetical protein; Validated
Probab=41.60 E-value=1.6e+02 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
|..+|+.|+.....|..+|.-.+++....+.++..|+.+|+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 114
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.16 E-value=2e+02 Score=28.18 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=32.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~ 180 (403)
.++..+++.|..++.....||.-..++...|+.-+..++......+...+.+..
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777666666666666666655544444443333333
No 115
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.50 E-value=1.5e+02 Score=25.29 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEIL--LLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 178 (403)
Q Consensus 129 l~~eIe~LK~d~~~L--~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqm 178 (403)
....+..+..+...| ..++.+|+-....+..++..|..+++.+.+...-+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555 55555555555556666666666666665444333
No 116
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.34 E-value=1.4e+02 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
...++.++..++..|+++|..++.+...+..+...|.+.|+.+.+.|.+|..-+.-+
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445556666777777777777777777777777777777777777777776655543
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.33 E-value=2.6e+02 Score=24.67 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 173 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq 173 (403)
....|...|.++.-+...|..++.++..+...+..++..|..+....+.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888888888888888888888888888888777655543
No 118
>PRK06798 fliD flagellar capping protein; Validated
Probab=40.19 E-value=1.1e+02 Score=32.52 Aligned_cols=50 Identities=6% Similarity=0.186 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~ 180 (403)
.+..+|.+|.+++..+...+.+.+ +.++.|..+|+..+..|..++..|.+
T Consensus 383 ~l~~~i~~l~~~~~~~e~rl~~~e---~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 383 SIDNRVSKLDLKITDIDTQNKQKQ---DNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444332 23455555666555555544433333
No 119
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.85 E-value=1.3e+02 Score=26.71 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
..-++.|+...+.|..++.+|+.+...+..++..|+..|
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666555555444444444433
No 120
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=39.53 E-value=2.3e+02 Score=26.63 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 145 LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 145 ~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.++.++++++..+...+..|+.++..++.--+.++..+.+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555554444
No 121
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=39.19 E-value=1.7e+02 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 162 QLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 162 q~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.....|+..+.+++..+.+-+.+|+.
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444443
No 122
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.08 E-value=1.9e+02 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
++..+....+....|..|+.+.....+....+++.|+...+..+.......
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555556666655555555555555555555444444333333
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.56 E-value=1.3e+02 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
.++..|......+..||..|...+..++.++-.+.++|
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444433333433333333333
No 124
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.53 E-value=2.4e+02 Score=28.69 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQER 154 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqq 154 (403)
.+..++..|.++...|.+|+..++.+.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444444444333
No 125
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.47 E-value=1.6e+02 Score=33.31 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEK 140 (403)
Q Consensus 128 ~l~~eIe~LK~d~ 140 (403)
.|+.+|++||.|.
T Consensus 422 rLE~dvkkLraeL 434 (697)
T PF09726_consen 422 RLEADVKKLRAEL 434 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666543
No 126
>PHA01750 hypothetical protein
Probab=38.33 E-value=1.3e+02 Score=24.23 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 138 KEKEILLLELQRHEQERQGFESQMQLLRE 166 (403)
Q Consensus 138 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~e 166 (403)
++...|..|++.++-.+-+++.|+..++.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 127
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.23 E-value=2.7e+02 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
.+|++.|++++..+..++..+++++...+.+...+.-.|..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999989999988888888888888777776654
No 128
>PRK00846 hypothetical protein; Provisional
Probab=37.92 E-value=2.3e+02 Score=23.30 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQK 177 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqq 177 (403)
+++.|..|.-.......-+..|.+.....+.++..|++++..+-.+.+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655544444444444445444455555555555444444333
No 129
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.90 E-value=55 Score=26.91 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015655 134 ERLKKEKEILLLELQRHE 151 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlr 151 (403)
..|.+++..|..||++++
T Consensus 3 ~ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 130
>PRK14127 cell division protein GpsB; Provisional
Probab=37.84 E-value=96 Score=27.06 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 136 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 136 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+-.+...|..|+.+|+.++..++.++..++.++.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3356666666666666666655555555555443
No 131
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.22 E-value=2e+02 Score=28.07 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
-|..++++...|..|=..+-++.+.+...+..|+.-+...+....++...+.+++
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666655555555666666666666555555555555554444
No 132
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.14 E-value=2.6e+02 Score=23.64 Aligned_cols=53 Identities=15% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKE-ILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 130 ~~eIe~LK~d~~-~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
+..|..||+..+ .-...|..|..++..+..++..|+.++......-+.++..|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677765543 34466677777777777777777777776665556666543
No 133
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.97 E-value=46 Score=27.86 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=22.3
Q ss_pred CchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQER 154 (403)
Q Consensus 121 l~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqq 154 (403)
+++..+.+++.|+..|+........+|..|++++
T Consensus 33 Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 33 LSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 4555666677777777666666666666666654
No 134
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.64 E-value=1.1e+02 Score=24.64 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRER 167 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~er 167 (403)
|..|+.....+..++..++.........+..|+++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 135
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.61 E-value=1.5e+02 Score=26.02 Aligned_cols=47 Identities=32% Similarity=0.408 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
.+.+.++.|++....|...+..+.++...+..++..+.+.+..+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777776666666666666666555443
No 136
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=36.26 E-value=1.5e+02 Score=24.68 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
+...++.|.+++..|+++|..++....=...|++.+.+|+..+
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788889999999999999888877778888888876543
No 137
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=36.11 E-value=1.4e+02 Score=30.36 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 139 EKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 139 d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
+.+.|+.|+.-|...++.|+.|+..|+..++.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444444433
No 138
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.00 E-value=69 Score=31.20 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=18.9
Q ss_pred ceeccCccccCcccccccccccC
Q 015655 82 WEFANEDFVRGQPERLKNIHRRK 104 (403)
Q Consensus 82 ~eF~h~~F~Rg~~~lL~~IkRkk 104 (403)
|-+.||.|-+-+++|+..|.=..
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCC
Confidence 44589999999999999987543
No 139
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.92 E-value=2.2e+02 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE 192 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~ 192 (403)
.++..+......+..+|..|+.....+..++..++.+...+.++.=+++..+. ++..-|+.
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e-ilr~~g~~ 104 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE-ILRNRGYA 104 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 34455555556666666666556666677777777777777666666655555 55555544
No 140
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.90 E-value=1.8e+02 Score=30.43 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 136 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 136 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.|.+...|..=+.+++++++-++.|++++.+....++..-+++..-|+.
T Consensus 125 ~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 125 TKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555544444444443
No 141
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=35.68 E-value=1.9e+02 Score=26.33 Aligned_cols=58 Identities=10% Similarity=0.243 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
+...++.+-.+.......|..+..+......+-..+.+.-..+-..|.++..+.-.+-
T Consensus 12 ~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~ 69 (157)
T PF04136_consen 12 YREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEIS 69 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666666666666555555555555555444433
No 142
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.47 E-value=3e+02 Score=26.68 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+..++..|+.....|..++..++.++..+...+.+.+.|..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555554
No 143
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=35.42 E-value=15 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=16.4
Q ss_pred HhccCCCCCCceEEcCCCCeEEEE
Q 015655 20 EMVDDSSTDLTVSWSSSNKSFIVW 43 (403)
Q Consensus 20 ~mved~~~~~iI~Ws~~G~sFiI~ 43 (403)
.+++.+..+.-..|+|||+.++-.
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEE
Confidence 355666677778899999987654
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.30 E-value=2.7e+02 Score=26.74 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=11.6
Q ss_pred hhhhhhhhHHHHHHHHHhh
Q 015655 247 FEQLESSMTFWENIVQDVG 265 (403)
Q Consensus 247 ~e~~essl~~~E~~~~~~~ 265 (403)
-+.+-.||.+-=-|++=++
T Consensus 194 ~~~isaALgyvahlv~lls 212 (302)
T PF10186_consen 194 DEEISAALGYVAHLVSLLS 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566667776666666444
No 145
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=35.24 E-value=1.7e+02 Score=31.76 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=44.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
..+..+|..|.++...+...|...+ +.++.|...|.+.+..|..++..|.+||..+
T Consensus 425 ~~l~~~i~~l~~~i~~~~~rl~~~e---~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKRLEAAE---ERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578888888888888887766544 4567888889999998888888888887664
No 146
>PRK04406 hypothetical protein; Provisional
Probab=35.24 E-value=2.4e+02 Score=22.81 Aligned_cols=41 Identities=7% Similarity=0.151 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+++.|..|.-....+..-+..|.+.....+.++..|+.+++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444444444444444444444443
No 147
>PRK00736 hypothetical protein; Provisional
Probab=35.13 E-value=2.3e+02 Score=22.44 Aligned_cols=44 Identities=5% Similarity=0.088 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
+++.|..|.-....+..-|..|.......+.++..|+.+++.+-
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555554445554444444445555554444333
No 148
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.50 E-value=1.5e+02 Score=27.13 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 119 TPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGF-ESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 119 ~~l~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l-~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.++|......|..|++.|+.....+..++..-+..=-.- ..+..+-++++...+.+.+.+-.-|+.
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888899999999876666655553332221000 012333444444455555555544443
No 149
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.26 E-value=2e+02 Score=31.20 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=29.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+.+..++..++++...|..+-.+|+.+++.|..+-..+..|++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4466677777777777777777777777777666666666654
No 150
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=2.1e+02 Score=32.01 Aligned_cols=43 Identities=28% Similarity=0.473 Sum_probs=33.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
..+...+++|++++..|..+|..++.+...|+.++..++.++.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888888887777655
No 151
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.11 E-value=1.8e+02 Score=24.69 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
..+-+..|+.....+...+..+..+...+..++..++.+|+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665555555555555543
No 152
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=33.92 E-value=1.7e+02 Score=33.02 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 183 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~ 183 (403)
+..+|.++.+.+..+...|..++ +.++.|..+|+..+..|...+.-|.+|+.
T Consensus 605 l~~~i~~l~~~i~~~e~rl~~~e---~rl~~QFtaME~~msqmnsqss~L~~~~~ 656 (661)
T PRK06664 605 LDERIADNNKKIEEYEKKLESKE---RKLKGKYLTMDQTVKKMKEQSNYLKNFNK 656 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555544444444443332 22344555555555555544444444443
No 153
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.87 E-value=3e+02 Score=27.11 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
...++..|+.+...|..++..++.++..+...+.++++|..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666665555555566666666654
No 154
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=33.54 E-value=1.4e+02 Score=26.19 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
++..|..|-++...|.+-|..+-.++..+..+...|++||..
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 455555555555666666666666666666667777777764
No 155
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.49 E-value=64 Score=33.49 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQER----QGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqq----q~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.+..+|+.||+.+..+..++..+.... ..+..++..+++|+..+|.+...|-.-+..
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 466777777777666666665554433 245667777777777777766666554443
No 156
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.22 E-value=3.5e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
+..+++.|+.....|..++..++..+..+...+.+.+.|...
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777776666666666667777776653
No 157
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.99 E-value=3.2e+02 Score=25.45 Aligned_cols=60 Identities=12% Similarity=0.269 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.++.+|..+-+--.....||-+-++-.++++.+-++...-+...|..--.-+.||.+|-.
T Consensus 16 ~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~t 75 (180)
T KOG4057|consen 16 TIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCT 75 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777666677788999989999999999999999999999888888888888764
No 158
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.80 E-value=1.5e+02 Score=29.24 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 165 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 165 (403)
+..+=+++|..+..|..|+.+++++...++.++..|+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555555555554444
No 159
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.71 E-value=2.6e+02 Score=22.37 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+++.|..|.-.......-|..|.+.....+.++..|+.++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655554444444444444444444444444444443
No 160
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=32.43 E-value=1.5e+02 Score=25.62 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=37.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
..|.+++..+-...+.|...-++=-|-.+.++.+|+.|+.++...|.-.+.++
T Consensus 43 rqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 43 RQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 44666777777666777666665555567788888888888888887666665
No 161
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.23 E-value=2.9e+02 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 015655 138 KEKEILLLELQRHEQ 152 (403)
Q Consensus 138 ~d~~~L~~EL~rlrq 152 (403)
+++..|.+++..|+.
T Consensus 95 kE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 95 KEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 162
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.13 E-value=2.9e+02 Score=29.58 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
++.+|..+.+.......++.++++....+...+..|+.+......+--.++.-+.+
T Consensus 71 ~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 71 LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444433333334444444444444444444433333333333333333333
No 163
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=32.03 E-value=89 Score=29.54 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqq 153 (403)
|++.|+.-.+++..||+.|+++
T Consensus 146 EaeQLQsLR~avRqElqELE~Q 167 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELEFQ 167 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666655
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.79 E-value=2.2e+02 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=13.6
Q ss_pred HHHHHhhhcCCCCCchHH
Q 015655 340 VFWEQFLTENPGSSDAQE 357 (403)
Q Consensus 340 ~FWeqfLte~Pgs~~~~e 357 (403)
.++++.+...|+|..+.+
T Consensus 238 ~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 238 AVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHCcCCHHHHH
Confidence 567888888888876555
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.62 E-value=2e+02 Score=32.55 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Q 015655 136 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM-------EQRQQKMVSFVGRALQ 187 (403)
Q Consensus 136 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~-------Eq~Qqqml~fL~~vlq 187 (403)
+|.....|..|+.+|+.+.+..+.++..|+..++.+ +.....+++-|+-+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444555566666666666666666666655544322 2234455555554443
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.62 E-value=1.5e+02 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
+...+.|++....|..|++.+..+.+.++.++..|+..+..++.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555555556666666555555555556666666555555444
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.46 E-value=5.1e+02 Score=26.66 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=38.1
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 122 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 122 ~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
++..+..+...|..|+.++..|..||...+.....+..++..|++....+
T Consensus 18 S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 18 SSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667888888888888888888888888888888888877654444
No 168
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.08 E-value=2e+02 Score=30.64 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCcchh
Q 015655 139 EKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR------QQKMVSFVGRALQKPGLES 193 (403)
Q Consensus 139 d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~------Qqqml~fL~~vlq~P~f~~ 193 (403)
....|..++.+|+.....+..++..+.++|..+... ......++..++.++|+-.
T Consensus 359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~ 419 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKA 419 (562)
T ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334444444444444444444455555554444332 2233455666666676643
No 169
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=30.85 E-value=1.7e+02 Score=30.23 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=33.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQERQG----------FESQMQLLRERFQLM 171 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~----------l~~qvq~L~erl~~~ 171 (403)
.+...+..++.+|+++...|..||.+.+..... +..++..|+++|..+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 355678899999999999999999987543222 334555555555544
No 170
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.69 E-value=47 Score=35.98 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQ 155 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq 155 (403)
++++.|| +.+.|.+||+.|++++.
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 3344333 44444455555444444
No 171
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=30.67 E-value=3.2e+02 Score=27.85 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqq 153 (403)
|.-+|+-||.....|...+..++.+
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re 134 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQRE 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 172
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.62 E-value=2.3e+02 Score=31.89 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=34.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 176 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qq 176 (403)
++..+..+|++|+.+...|..+|..+..+...-+..+..+.+++....++|-
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~ 131 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQL 131 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766666666666666666655555543
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.58 E-value=3.5e+02 Score=27.58 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=8.6
Q ss_pred hhhhhhhhhhHHHHHH
Q 015655 245 EKFEQLESSMTFWENI 260 (403)
Q Consensus 245 e~~e~~essl~~~E~~ 260 (403)
..+.+|...+.+||++
T Consensus 271 ~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 271 KEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 174
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.40 E-value=3.3e+02 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 156 GFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 156 ~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
.+..+++.|+..+.....+.+.++.-|..+-
T Consensus 26 ~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 26 ENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554444433
No 175
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.36 E-value=2.3e+02 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 167 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~er 167 (403)
.+-+..|+.....+..++.++..+...++.++..++..
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666665555544444444443333
No 176
>PRK07737 fliD flagellar capping protein; Validated
Probab=30.29 E-value=2.1e+02 Score=30.96 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015655 158 ESQMQLLRERFQLMEQRQQ 176 (403)
Q Consensus 158 ~~qvq~L~erl~~~Eq~Qq 176 (403)
+.|..+|+.-+..|...+.
T Consensus 472 ~~qf~ale~~~s~mnsq~s 490 (501)
T PRK07737 472 YKKFSAMEKAIQKANEQSM 490 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 177
>PRK15396 murein lipoprotein; Provisional
Probab=29.90 E-value=2.7e+02 Score=22.90 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=37.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
+...|..+++.|+.+...|..+++.++..-+....+-..-.+||..+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888765
No 178
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.70 E-value=3e+02 Score=22.24 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQ 155 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq 155 (403)
+.+..|++|++++-.|...|.-|++...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3456777777777777777666555544
No 179
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.47 E-value=2e+02 Score=27.00 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=11.5
Q ss_pred ccCccccCcccccccccccC
Q 015655 85 ANEDFVRGQPERLKNIHRRK 104 (403)
Q Consensus 85 ~h~~F~Rg~~~lL~~IkRkk 104 (403)
.|-.|...+...|..|++-+
T Consensus 34 G~R~y~~~dl~~L~~I~~l~ 53 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQI 53 (175)
T ss_pred CCEEECHHHHHHHHHHHHHH
Confidence 34455555566677776643
No 180
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=29.47 E-value=3.1e+02 Score=22.23 Aligned_cols=58 Identities=22% Similarity=0.417 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HH-HHHHHHHHHHHHhcC
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFES---QMQLLRERFQLM---EQ-RQQKMVSFVGRALQK 188 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~---qvq~L~erl~~~---Eq-~Qqqml~fL~~vlq~ 188 (403)
..+..|..++..|...+..+.++.+.+.. ++..++.++..+ |. -=++-++-|+-||..
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAEIMNR 67 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAEIMNR 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555556666666555555444433322 233333333322 22 225667888888754
No 181
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.35 E-value=3.4e+02 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQ 152 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrq 152 (403)
...||..||..+..|..|-+.|+.
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555543
No 182
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.07 E-value=2e+02 Score=24.09 Aligned_cols=43 Identities=30% Similarity=0.395 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
.+.+.++-+++....|...+.+++++...+..++..+...++.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777766666666666655543
No 183
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.07 E-value=2.8e+02 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQ---RQQKMVSFVGRALQ 187 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~erl~~~Eq---~Qqqml~fL~~vlq 187 (403)
..++++.++.+.+.|..+++.-.-+ .+.++.|+..|++|+..+.+ .+..|-+.|+.+-+
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q 111 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQ 111 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHH
Confidence 4677888888888888877653333 34556677777777766654 23445555554433
No 184
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.05 E-value=3.3e+02 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015655 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~ 188 (403)
.+..++...|.++|..+++..+.+-.+...|..+|......|.++..-|..+-.+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666667777777777777777776665544
No 185
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.00 E-value=1.9e+02 Score=29.04 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcchh
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR-------ERFQLMEQRQQKMVSFVGRALQKPGLES 193 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~-------erl~~~Eq~Qqqml~fL~~vlq~P~f~~ 193 (403)
+...+..+..|...|...+.+-+++..-.+.++++|+ +.+..+|..-+++..--..-+++-.++.
T Consensus 181 ~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe 252 (267)
T PF10234_consen 181 TQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLE 252 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455556666666666666666666666666666555 3455555555555444444444444443
No 186
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.98 E-value=3e+02 Score=21.87 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 015655 139 EKEILLLELQRHEQERQGFESQMQLLRE------RFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 139 d~~~L~~EL~rlrqqqq~l~~qvq~L~e------rl~~~Eq~Qqqml~fL~~v 185 (403)
++..+..+|.+|+|+...+..-+.+|.+ |++.|..+--.+-..+.++
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKKLAlKDki~~l 57 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKKLALKDKITKL 57 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHHHhHHHHHHHH
No 187
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=28.92 E-value=1.5e+02 Score=29.46 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
+|..|+..++.++..|..+|.-+..+|++|+.-+-.|+..+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778888888888888888777778887777777776654
No 188
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=1.3e+02 Score=27.03 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
..+.+||..+-+..+.++..+..|+++|...|
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777765554333
No 189
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.79 E-value=3.2e+02 Score=30.19 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.7
Q ss_pred hhhcccc
Q 015655 48 FARDLLP 54 (403)
Q Consensus 48 F~~~VLP 54 (403)
|....||
T Consensus 77 F~ayyLP 83 (546)
T PF07888_consen 77 FQAYYLP 83 (546)
T ss_pred ECcccCC
Confidence 3333444
No 190
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.70 E-value=1e+02 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015655 142 ILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 142 ~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
.|..++..|..++..|..++..|
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 191
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=28.69 E-value=1.8e+02 Score=29.34 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
+.|++.-+.+-..|..++..|+.+...+..|+..+++.+.+
T Consensus 70 e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 70 EFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555554443
No 192
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=28.33 E-value=2.4e+02 Score=30.08 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 140 KEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 140 ~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
...|..++.++..+...++.+|..+++||.
T Consensus 408 ~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 408 TDGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 193
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=28.32 E-value=2.8e+02 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.+...|+.|..-...+...|..-+.+-..+-.++..|+++.+..+.+++-+..|+.+..=
T Consensus 49 ~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~L 108 (618)
T PF06419_consen 49 RLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTL 108 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355566666666677777777777777777788888888999999999999999888443
No 194
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.27 E-value=1.8e+02 Score=29.11 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqq 153 (403)
.+..|++++..|..|+..++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655555333
No 195
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.24 E-value=3.9e+02 Score=28.58 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=34.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
++....+...+++++..-..+|.++..+.+++..++..|-++....+..
T Consensus 118 ~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777788888888888888887777766655543
No 196
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.20 E-value=3.5e+02 Score=22.50 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=32.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
..+..+|..|..+...|-.+|.........++.-...+..||...-...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887766665555555555555655443333
No 197
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.17 E-value=3.4e+02 Score=29.22 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcch
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM----EQRQQKMVSFVGRALQKPGLE 192 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~----Eq~Qqqml~fL~~vlq~P~f~ 192 (403)
+..+.+.|+++...|.++|.++..+++.+-.+++.++.+=... .+..+.--.|..+++...+-+
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del 248 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDEL 248 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 4567777888888888888888888888888887777553322 234444445555555554433
No 198
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.13 E-value=2.7e+02 Score=22.62 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
...-+..|+.+...+..++.+++.+...+..++..++..|.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777788888888877777777777777766654
No 199
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.11 E-value=1.9e+02 Score=30.47 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 176 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qq 176 (403)
.+..|+.++.+...|.+|+.+....+..+..+|..|++-+..+|--.|
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 566788889999999999999999999999999999988887775433
No 200
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.08 E-value=2.6e+02 Score=30.75 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQ 148 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~ 148 (403)
..++..++.....|..||.
T Consensus 461 ~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444443
No 201
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.97 E-value=2.5e+02 Score=33.79 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ------RQQKMVSFVGRALQ 187 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq------~Qqqml~fL~~vlq 187 (403)
.+..+|..+|.+......+|.+++.+..++..++..+++|+..+.. ...+++.+|.++-.
T Consensus 546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4566777777777788888888888888888888888888775543 45677777777544
No 202
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.82 E-value=1.5e+02 Score=24.64 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQ 162 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq 162 (403)
+|-.|-.+...+..++..++.+...+..++.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444444444433
No 203
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.76 E-value=4.5e+02 Score=24.72 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=30.0
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 124 SERQGLKDDIERLKKEKEILLLELQRHEQ----ERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrq----qqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.+|..+..+++.|+.+...|..||..+.. ..+.+..++..+++.+..--...-.|.+++.+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35556666666666666666666664332 12233333333333333333344444455544
No 204
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.66 E-value=2.7e+02 Score=23.51 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
+.+-++.|++....|..++..+..+...+..++..++..++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777777666666666666666554
No 205
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.64 E-value=4.5e+02 Score=23.51 Aligned_cols=60 Identities=10% Similarity=0.232 Sum_probs=35.9
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.++.|.+-+..+-+....+...|..-|.+ |..++..|-.++..+...++.|-.-+..+-.
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkh---LsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKH---LSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666554433 4566777777776666666666655554433
No 206
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=27.59 E-value=2.6e+02 Score=29.41 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015655 143 LLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188 (403)
Q Consensus 143 L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~ 188 (403)
+...++.++-+++.|...++.|++.+..+..+-++++.-+..+++.
T Consensus 335 ~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqa 380 (400)
T COG5613 335 LQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQA 380 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555555555443
No 207
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.43 E-value=2.8e+02 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 174 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~ 174 (403)
..++...+.....+..+|..|+.++.....+.+.|+..+..++.+
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444445555555555444444444444444444443
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.38 E-value=3.6e+02 Score=30.07 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCC
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ------RQQKMVSFVGRALQKP 189 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq------~Qqqml~fL~~vlq~P 189 (403)
..+++.|+.....|..++..+..+...+...+..+.+.+...+. .+-.+..-+..++.++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~ 392 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDA 392 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444444444444444444444444444444444443332 2334555555666665
No 209
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=27.32 E-value=1.9e+02 Score=27.84 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
|-+.|+.+...+..||..|+|-...-+.++..|+++|
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555566666666666555555555565554
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.08 E-value=2.9e+02 Score=28.95 Aligned_cols=57 Identities=26% Similarity=0.213 Sum_probs=41.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
.+.|+.-|..++.++..|...|+.+.++....+.+.+.|...+..+-..|+.+...-
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888888888888887777788888777766666666555443
No 211
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.00 E-value=2e+02 Score=24.65 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
..+.+++..++++++.++.+...|++++..+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444433
No 212
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.94 E-value=2e+02 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 175 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Q 175 (403)
|+-|=+-+..|...+..++...+.+..+.+.++..+.......
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555554444433
No 213
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.92 E-value=3.6e+02 Score=25.23 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=22.2
Q ss_pred CchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQ 160 (403)
Q Consensus 121 l~~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q 160 (403)
+++.|+.+|..||.++..+...|.+-|..-+.....|+.+
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555556666666666666555555555444444444444
No 214
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.73 E-value=5.5e+02 Score=24.30 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=4.1
Q ss_pred ccccccee
Q 015655 69 LNTYGFRK 76 (403)
Q Consensus 69 LN~YGF~K 76 (403)
|-.+||..
T Consensus 81 LE~~GFnV 88 (190)
T PF05266_consen 81 LEEHGFNV 88 (190)
T ss_pred HHHcCCcc
Confidence 44466643
No 215
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.62 E-value=3.5e+02 Score=25.18 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
|...|+.|... ..+..+|..|+++...+..++..+-..|..++.....++
T Consensus 14 L~~~L~~l~~h-q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEELQEH-QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555433 345777888888888888888888777777776555555
No 216
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.33 E-value=3.7e+02 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILL 144 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~ 144 (403)
+.+|..|++....|.
T Consensus 130 e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 130 ESEIKELEMKILELQ 144 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 217
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.33 E-value=4.9e+02 Score=24.02 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=27.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
+....++..|+.++..|..+..+-++.....+.++..+++.+
T Consensus 46 ~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~ 87 (158)
T PF09744_consen 46 QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQW 87 (158)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888777766655555555555444433
No 218
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.25 E-value=2.7e+02 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 130 KDDIERLKKEKEILLLELQRHEQER---QGFESQMQLLRERFQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqq---q~l~~qvq~L~erl~~~Eq~Qqqml~fL~~ 184 (403)
.+-++.|+.....|..++.++.... .....++..+++++...+.+...+-.++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555554431 134567777888888888877777776654
No 219
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=26.06 E-value=1.8e+02 Score=25.98 Aligned_cols=78 Identities=15% Similarity=0.359 Sum_probs=25.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcccccccc
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQ----MQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENH 202 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q----vq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~~l~q~~~~~ 202 (403)
..+.+++..++.+..+|..++....+.++.++.= ++.|.+++..+++. ++|+.-|.. .| --+.++.....
T Consensus 9 ~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~-Kelle~Lk~---q~--d~~iip~~~~~ 82 (121)
T PF03310_consen 9 SELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECN-KELLEALKK---QP--DKQIIPSPEED 82 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTH-HHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhh-HHHHHHHhc---CC--CCCcCCCCCCC
Confidence 3444555555555555555554444434444333 44455666666544 344433332 11 11222333333
Q ss_pred cCCCCCCC
Q 015655 203 DRKRRLPR 210 (403)
Q Consensus 203 ~kKRRLp~ 210 (403)
++++++++
T Consensus 83 ~~~~~~~k 90 (121)
T PF03310_consen 83 SKGSSLQK 90 (121)
T ss_dssp --------
T ss_pred CCCCCCcc
Confidence 66677765
No 220
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.94 E-value=3.4e+02 Score=27.90 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQ------------------ERQGFESQMQLLRERF----QLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrq------------------qqq~l~~qvq~L~erl----~~~Eq~Qqqml~fL~~v 185 (403)
.|..++..|..++..|..|..+|+. +......+|..|.+-| ......|..|.+.++++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777662 2222233444444433 33445778888888887
Q ss_pred hc
Q 015655 186 LQ 187 (403)
Q Consensus 186 lq 187 (403)
+.
T Consensus 244 vd 245 (306)
T PF04849_consen 244 VD 245 (306)
T ss_pred HH
Confidence 65
No 221
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.93 E-value=1.6e+02 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=11.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQ 148 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~ 148 (403)
++++..+|+++...++.|..+|-
T Consensus 102 rqel~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444443
No 222
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.70 E-value=3.3e+02 Score=32.45 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=26.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
+.++.++++.|+++.+.|...+.+|+++.+.+.......++.+
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445666666666666666666666666666666555555544
No 223
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.69 E-value=5e+02 Score=24.33 Aligned_cols=43 Identities=14% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 137 KKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179 (403)
Q Consensus 137 K~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml 179 (403)
......|...+..+..+...+..++..|+.+|..++.+...++
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555555555555555544443
No 224
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.44 E-value=65 Score=34.95 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 146 ELQRHEQERQGFESQMQLLRERFQLME 172 (403)
Q Consensus 146 EL~rlrqqqq~l~~qvq~L~erl~~~E 172 (403)
+|..|+++.+.|+.|+..|.+|+...|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 444444444444444444444444443
No 225
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.21 E-value=3.8e+02 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 161 MQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 161 vq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
...+.+++..++.+...|-..|.+.
T Consensus 384 ~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 384 KKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444443
No 226
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=3.6e+02 Score=28.27 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 145 LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 145 ~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
.+|.|-.++...-.++|.+++++|....+..++-+..|
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33334444444444455555555544433333333333
No 227
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.16 E-value=4.7e+02 Score=25.47 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.+..+|..|+.+...|...+.| +..++.+.+.|..
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR-------~~AEfeN~rkR~~ 78 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQR-------LQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3445555555554444444444 4445555555544
No 228
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.05 E-value=4e+02 Score=22.92 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 165 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 165 (403)
+...+..|+.....+..+..++++..+....++..|+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544444444444443
No 229
>PRK14162 heat shock protein GrpE; Provisional
Probab=24.98 E-value=4.9e+02 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=13.1
Q ss_pred hhhhhhhhHHHHHHHHHhh
Q 015655 247 FEQLESSMTFWENIVQDVG 265 (403)
Q Consensus 247 ~e~~essl~~~E~~~~~~~ 265 (403)
++-++.-+.-+.+.|...|
T Consensus 119 ~~Gvemi~k~l~~vL~~~G 137 (194)
T PRK14162 119 KKGVQMTLDHLVKALKDHG 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 4556666677777777766
No 230
>PRK14158 heat shock protein GrpE; Provisional
Probab=24.96 E-value=5.6e+02 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.++..|+.+...|..++..++.++..+...+.+.+.|..
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555666666654
No 231
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.88 E-value=3.7e+02 Score=21.65 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 171 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~ 171 (403)
+..+....+...+.|...+...+++...+..++..|..++..+
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555443
No 232
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.71 E-value=4.8e+02 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
+.|.+++..|.+-++.|++++....+++..|+.+|
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455544444444444444443
No 233
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=2.4e+02 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
-.+.|+.....|..+|..++.+...+..+|..|+..|.
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888889999999888888888888877664
No 234
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=5.2e+02 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGF 157 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l 157 (403)
+..+++.++.+...+..|+.+++++...+
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 235
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=24.24 E-value=1.1e+02 Score=28.14 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.3
Q ss_pred CCCchhhhhchHHHHHHHHH
Q 015655 119 TPLTESERQGLKDDIERLKK 138 (403)
Q Consensus 119 ~~l~~~e~~~l~~eIe~LK~ 138 (403)
..+|..+...|.+|++.|+.
T Consensus 29 ~~lT~~G~~~L~~El~~L~~ 48 (160)
T PRK06342 29 NLVTEAGLKALEDQLAQARA 48 (160)
T ss_pred ceECHHHHHHHHHHHHHHHH
Confidence 34677777778888887763
No 236
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=2.7e+02 Score=25.51 Aligned_cols=45 Identities=29% Similarity=0.265 Sum_probs=37.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
..-+..+++.|.+-...|...|.++-+....+..+++.+..+-..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355888999999999999999999999988888888887766543
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=4.4e+02 Score=29.66 Aligned_cols=29 Identities=45% Similarity=0.588 Sum_probs=18.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqq 153 (403)
+...|..+|++||++.+.|..+|.+++..
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777665543
No 238
>PRK14157 heat shock protein GrpE; Provisional
Probab=23.79 E-value=4.6e+02 Score=25.77 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 165 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 165 (403)
.+..+|..|+.+...+...+.|++-+.++++.++..-+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~ 118 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQ 118 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888887777777777777766666555554433
No 239
>PRK14154 heat shock protein GrpE; Provisional
Probab=23.71 E-value=4.8e+02 Score=25.26 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQM 161 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv 161 (403)
.+..+|..|+.+...|...+.++..+.+++..++
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555555544443333
No 240
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.70 E-value=3.5e+02 Score=20.91 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQE 153 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqq 153 (403)
+..++.+|.++...+..++.++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665544
No 241
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=23.70 E-value=4.2e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 165 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 165 (403)
-..||++|+.-...|..+|.+...-+..++.+...++
T Consensus 17 K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 17 KQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777766665555555554444
No 242
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.63 E-value=6e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 015655 157 FESQMQLLRERFQLME 172 (403)
Q Consensus 157 l~~qvq~L~erl~~~E 172 (403)
+..+...|+.++..++
T Consensus 235 l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 235 LRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHH
Confidence 3333333333333333
No 243
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.58 E-value=5e+02 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=9.9
Q ss_pred hhhhccccccceee
Q 015655 64 SFIRQLNTYGFRKV 77 (403)
Q Consensus 64 SFvRQLN~YGF~Kv 77 (403)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 47788877777654
No 244
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.47 E-value=5.5e+02 Score=24.34 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=12.5
Q ss_pred hhhhhhhhHHHHHHHHHhh
Q 015655 247 FEQLESSMTFWENIVQDVG 265 (403)
Q Consensus 247 ~e~~essl~~~E~~~~~~~ 265 (403)
++-++.-+.-+.++|...|
T Consensus 110 ~~Gv~mi~k~l~~vL~k~G 128 (185)
T PRK14139 110 REGVELTLKQLTSAFEKGR 128 (185)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 4556666667777777665
No 245
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=23.44 E-value=2.5e+02 Score=30.15 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
...++++|.+||++...|.+-|+|-+-... -...|.++|+...+..-++....+.+
T Consensus 415 lv~~edeirrlkrdm~klkq~l~RN~gd~v----~s~~lqe~L~ev~~~Lasl~aqea~l 470 (486)
T KOG2185|consen 415 LVEYEDEIRRLKRDMLKLKQMLNRNKGDLV----VSEALQERLKEVRKALASLLAQEAAL 470 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999988887665322 13445566665555555555544443
No 246
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=23.36 E-value=3e+02 Score=29.68 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
|++.|+.+...+..|++.++.+.+.+..+++.++.++.
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666555555555555444
No 247
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=23.34 E-value=46 Score=28.85 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 139 EKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 139 d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
....|..++.+++..+.. |...|..++..|..+-..|
T Consensus 58 ~I~~L~~~v~~~~~~Q~~-------ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKR-------LDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 334444555544444443 3334444444455444443
No 248
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.04 E-value=2.1e+02 Score=27.84 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 015655 137 KKEKEILLLELQR 149 (403)
Q Consensus 137 K~d~~~L~~EL~r 149 (403)
++++..|.+|+..
T Consensus 75 ~~en~~L~~e~~~ 87 (276)
T PRK13922 75 REENEELKKELLE 87 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 249
>PF15456 Uds1: Up-regulated During Septation
Probab=22.89 E-value=3.7e+02 Score=23.84 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
.+|++.||++...| ..++..++.+|. .+.+......-|+++..
T Consensus 21 ~eEVe~LKkEl~~L--------------~~R~~~lr~kl~-le~k~RdAa~sl~~l~~ 63 (124)
T PF15456_consen 21 FEEVEELKKELRSL--------------DSRLEYLRRKLA-LESKIRDAAHSLSRLYS 63 (124)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 34566666555444 445555555554 55555555555666544
No 250
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.86 E-value=2.9e+02 Score=25.27 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 015655 131 DDIERLKKEKEILLLE--LQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE 192 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~E--L~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~ 192 (403)
..+.+|++....++.- -..++.-......++..+++.+..++.+++.|-.-+...+++.|++
T Consensus 23 ~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 23 IKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
Confidence 3445555554444311 1122222333344455555555555555566666666666665543
No 251
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=4.7e+02 Score=27.44 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 015655 258 ENIVQDV 264 (403)
Q Consensus 258 E~~~~~~ 264 (403)
|-|++++
T Consensus 346 eQF~~ra 352 (365)
T KOG2391|consen 346 EQFILRA 352 (365)
T ss_pred HHHHHHH
Confidence 4444443
No 252
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.75 E-value=3.2e+02 Score=24.52 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~ 188 (403)
.+......|.+........|.-|+.+....+..+....+.|+.++...+..-.-+.....+
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555666666666666666677777777777777666666666655
No 253
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=22.57 E-value=4.2e+02 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 138 KEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 138 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
+-+..--++|..|++++..++.|+..-..+|..
T Consensus 123 rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEn 155 (179)
T PF13942_consen 123 RLQQSSDSELDALRQQQQRLQYQLDTTTRKLEN 155 (179)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344455555555555555555544444443
No 254
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.42 E-value=2.4e+02 Score=30.93 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=57.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcc----cc---c
Q 015655 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFG----AH---L 199 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~~l~----q~---~ 199 (403)
.++..+|..|.+....+...+.....-+..+...+..+.++|..++..|..|...|..+..+-.-+..-+ .. .
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766667777777888888888888888888888888776543322211 11 1
Q ss_pred ccccCCCCCCCc
Q 015655 200 ENHDRKRRLPRI 211 (403)
Q Consensus 200 ~~~~kKRRLp~~ 211 (403)
-..=.|++||.+
T Consensus 427 kR~lek~nLPGl 438 (560)
T PF06160_consen 427 KRRLEKSNLPGL 438 (560)
T ss_pred HHHHHHcCCCCC
Confidence 223467888866
No 255
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.37 E-value=6.8e+02 Score=24.01 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
...++..|+.....|..++..++..+..+...+.+.+.|...
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777776666666666677777777653
No 256
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=5.2e+02 Score=27.26 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 130 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 130 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
..+...++.+...+...++.|....+.++.++..+.++++..=+.+-.|+.-+...+.
T Consensus 329 nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdtlh 386 (400)
T COG5613 329 NAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDTLH 386 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555555555555666666666555555566655555444
No 257
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.33 E-value=4.8e+02 Score=26.27 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 136 LKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 136 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
++.....+..++..++.+...++.++..++.++
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333444444443333
No 258
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.25 E-value=4.6e+02 Score=31.35 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v 185 (403)
.++.++.+|+++...|..+..+.+..+..++..+..|..++...+.+++....-+..+
T Consensus 665 ~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el 722 (1074)
T KOG0250|consen 665 DLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTEL 722 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555566666666666666666666665555555443
No 259
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.19 E-value=4.5e+02 Score=26.83 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 130 KDDIERLKKEKEIL---------LLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 130 ~~eIe~LK~d~~~L---------~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
..++.+.|++++.+ .+|-..+.-+.+.++.+-..|++++..+|+.++-|-.+|..+..
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444 23333444455556666666777777777776666666555443
No 260
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.00 E-value=3e+02 Score=22.99 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 015655 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRER---FQLMEQRQQKMVSFVGR 184 (403)
Q Consensus 134 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~er---l~~~Eq~Qqqml~fL~~ 184 (403)
..+......|..|..+-.+++..+...+.+|... |..+-.++..++.-|..
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444444444444444322 33333344444444443
No 261
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=21.96 E-value=1.1e+02 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015655 161 MQLLRERFQLMEQRQQKMVSFVGRALQKP 189 (403)
Q Consensus 161 vq~L~erl~~~Eq~Qqqml~fL~~vlq~P 189 (403)
+..|++.++.+..-.+.+..|=.+++..|
T Consensus 20 v~eLEeEV~~LrKINrdLfdFSt~iiTkp 48 (48)
T PF14077_consen 20 VSELEEEVRTLRKINRDLFDFSTRIITKP 48 (48)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhccCC
Confidence 33344444444444456666666665544
No 262
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.82 E-value=3.1e+02 Score=30.36 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.++.++.-+|+....|..|+.+|+.++..+..+++.++.++.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999987654
No 263
>PRK14155 heat shock protein GrpE; Provisional
Probab=21.71 E-value=5.6e+02 Score=24.72 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=20.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQ 160 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q 160 (403)
...+..+|+.|+.+...|...+.|+.-+.+++..+
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR 49 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRR 49 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766666666666655554444333
No 264
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.66 E-value=3e+02 Score=21.69 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 135 RLKKEKEILLLELQRHEQERQGFESQMQLL 164 (403)
Q Consensus 135 ~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 164 (403)
.+..+...+..++..++.++..|..++..|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 265
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=21.64 E-value=4.1e+02 Score=26.33 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Q 015655 131 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLES 193 (403)
Q Consensus 131 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~ 193 (403)
-+...+.++...+.+++..++...+.++.-+..+.+.+.+.-+..++++.-+.+++++.+-..
T Consensus 237 i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~ 299 (306)
T PF04888_consen 237 IASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQ 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555556666666666666777788887777777654433
No 266
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=21.51 E-value=66 Score=36.01 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=15.4
Q ss_pred CcchHHHHHhhh---cCCCCCc
Q 015655 336 GVNDVFWEQFLT---ENPGSSD 354 (403)
Q Consensus 336 g~nD~FWeqfLt---e~Pgs~~ 354 (403)
.-||.||+|||. .-|.+++
T Consensus 28 ~~~d~FW~qLlsf~~~~p~~s~ 49 (678)
T PF09742_consen 28 PDDDPFWNQLLSFSISPPTSSE 49 (678)
T ss_pred CcchHHHHHHHcccCCCCCChH
Confidence 479999999998 6666654
No 267
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.33 E-value=3.7e+02 Score=22.33 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcc
Q 015655 144 LLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFG 196 (403)
Q Consensus 144 ~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~~l~ 196 (403)
..||.+.+.....++.++..|+.+....|. -+|+..+..+-=.|.-+..|+
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN--~EIv~~VR~~~mtp~eL~~~L 57 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKTEAEN--LEIVQMVRSMKMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHHHHHH
Confidence 344445555555555555555555544443 245555544444454444444
No 268
>PRK10722 hypothetical protein; Provisional
Probab=21.30 E-value=3.3e+02 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 144 LLELQRHEQERQGFESQMQLLRERFQLMEQ 173 (403)
Q Consensus 144 ~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq 173 (403)
..+|.+|+|++..++.++....++|..+-.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777665443
No 269
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.23 E-value=3.5e+02 Score=28.66 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 015655 127 QGLKDDIERLKKEKEILLLELQ-RHEQERQGFESQMQLLRERFQLME-QRQQKMVS 180 (403)
Q Consensus 127 ~~l~~eIe~LK~d~~~L~~EL~-rlrqqqq~l~~qvq~L~erl~~~E-q~Qqqml~ 180 (403)
+....||..||.+...+...++ .......++|.-|.....|+..+| +.||+.+.
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
No 270
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.12 E-value=3.5e+02 Score=23.05 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.+.+.++-|++....|...+..+.+....+..++..+..+++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666667777777777777766666666666666665553
No 271
>PRK08724 fliD flagellar capping protein; Validated
Probab=20.87 E-value=3.8e+02 Score=30.41 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 140 KEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 140 ~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
...|..++.++..++..++.+|..+++||.
T Consensus 619 ~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~ 648 (673)
T PRK08724 619 EKSLREQNYRLNDDQVALDRRMESLEKRTH 648 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666777777776666655
No 272
>PRK14144 heat shock protein GrpE; Provisional
Probab=20.70 E-value=7.5e+02 Score=23.78 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=18.3
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 123 ESERQGLKDDIERLKKEKEILLLELQRHEQERQGF 157 (403)
Q Consensus 123 ~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l 157 (403)
+.+...+..+++.|+.+...|...+.|+..+..++
T Consensus 44 ~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~ 78 (199)
T PRK14144 44 HPSYTALEEQLTLAEQKAHENWEKSVRALAELENV 78 (199)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666655555555555554444443
No 273
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.60 E-value=3.2e+02 Score=29.33 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 015655 129 LKDDIERLKKEKEILLLELQR 149 (403)
Q Consensus 129 l~~eIe~LK~d~~~L~~EL~r 149 (403)
.+.+|.+||+++..|..|..+
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555555544
No 274
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=20.52 E-value=2.5e+02 Score=31.45 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 170 (403)
Q Consensus 128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~ 170 (403)
.|..+++.|..++..|..||...+|-...|+.++..|++.|..
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKK 368 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888877666666666666666666553
No 275
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.37 E-value=7.5e+02 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 169 (403)
Q Consensus 132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~ 169 (403)
.|+.|+.....|..++..++..+..+...+.+.+.|..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQ 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555665554
No 276
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.17 E-value=5.5e+02 Score=24.71 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015655 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 187 (403)
Q Consensus 133 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq 187 (403)
+..++.-...|..+|.+++|....+...+.+.+.-....|.++..+-..|..+..
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk 130 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK 130 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666665566666666555555554444
No 277
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.12 E-value=7.1e+02 Score=23.64 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 141 EILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 182 (403)
Q Consensus 141 ~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL 182 (403)
..|..++..++.....+..++..|+.+|..++.+...++.-+
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555556666666666655555554433
No 278
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.05 E-value=3.4e+02 Score=23.70 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=33.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015655 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 168 (403)
Q Consensus 126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl 168 (403)
..-+...++.|......|..++..++++...+..+++.+..+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457778888888888888888888888888888888776653
No 279
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.05 E-value=6.7e+02 Score=25.63 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=39.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015655 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186 (403)
Q Consensus 125 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vl 186 (403)
|.+.|....+.|.+-+..|..||+--..+..-++.|+...+.++...++..+..-+-|-+..
T Consensus 68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666677777777766666666666665533
No 280
>PRK03918 chromosome segregation protein; Provisional
Probab=20.04 E-value=3.9e+02 Score=30.22 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=2.9
Q ss_pred CcHHHHH
Q 015655 12 PPFLAKT 18 (403)
Q Consensus 12 ~~Fl~KL 18 (403)
+.++.-+
T Consensus 37 Stil~ai 43 (880)
T PRK03918 37 SSILEAI 43 (880)
T ss_pred HHHHHHH
Confidence 3444443
Done!