BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015656
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 58/362 (16%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 40 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYS------------------------ 243
Query: 281 PSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEG 339
G LYT+G ++ G LG G ++ P +++ S S + Q+S GW+HT A+ S+G
Sbjct: 244 ------GALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDG 296
Query: 340 KILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399
K+ WGW + GQ+G GN++D P V F ++ K +QVSCG+ HT A+
Sbjct: 297 KLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Query: 400 LE 401
E
Sbjct: 345 TE 346
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ + +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 256
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G+ H+ A+T DG+LY WG N GQ+G+G
Sbjct: 257 LGHGD-LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 316 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 365
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254
S P++I E + V A+ + S+ ID
Sbjct: 366 -SVDRNFPKII---EALSVDGASGQHIESSNID 394
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 58/362 (16%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYS------------------------ 231
Query: 281 PSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEG 339
G LYT+G ++ G LG G ++ P +++ S S + Q+S GW+HT A+ S+G
Sbjct: 232 ------GALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDG 284
Query: 340 KILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399
K+ WGW + GQ+G GN++D P V F ++ K +QVSCG+ HT A+
Sbjct: 285 KLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Query: 400 LE 401
E
Sbjct: 333 TE 334
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 13/194 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ + +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 185 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 244
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G+ H+ A+T DG+LY WG N GQ+G+G
Sbjct: 245 LGHGD-LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 304 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 353
Query: 222 RSTSEYTPRLIKEL 235
S P++I+ L
Sbjct: 354 -SVDRNFPKIIEAL 366
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 169/361 (46%), Gaps = 50/361 (13%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFG-------------DRAV 267
T P + G K+ + A G+ H+ + +G +Y +G D +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 268 DKMLFQ---------EGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 318
L G +L S G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 256 PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 319 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 377
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 315 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 362
Query: 378 V 378
+
Sbjct: 363 I 363
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 175/353 (49%), Gaps = 54/353 (15%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 67
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHGIRIKQIACGDSHCLAVT 125
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K+ AAG H+A +
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKMVAAGAEHTAAV 176
Query: 254 DENGRVYIFG-------------DRAVDKMLFQEGNHARRPSLIS-----------GGEL 289
E+G +Y +G DR V + + G + S+++ G L
Sbjct: 177 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL 234
Query: 290 YTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGG 348
YT+G ++ G LG G ++ P +++ S S + Q+S G++HT A+ S+GK+ WGW
Sbjct: 235 YTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGFRHTMALTSDGKLYGWGW-- 291
Query: 349 SHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 401
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 292 ----------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 334
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 168/361 (46%), Gaps = 50/361 (13%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 30 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFG 89
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T +GE+ WG+N NGQLGLG
Sbjct: 90 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDT 148
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 149 EDSL--VPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 200
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFG----------------- 263
T P + G K A G+ H+ + +G +Y +G
Sbjct: 201 ---TDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 257
Query: 264 ----DRAVDKMLFQEGNHARRP-SLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 318
+ + + Q AR +L S G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 258 PHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 316
Query: 319 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 377
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 317 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 364
Query: 378 V 378
+
Sbjct: 365 I 365
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 170/351 (48%), Gaps = 50/351 (14%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 69
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKA--LHGIRIKQIACGDSHCLAVT 127
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K AAG H+A +
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKXVAAGAEHTAAV 178
Query: 254 DENGRVYIFG-------------DRAVDKMLFQEGNHARRP---------SLISGGELYT 291
E+G +Y +G DR V + + G S+ G LYT
Sbjct: 179 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYT 238
Query: 292 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGGSH 350
+G ++ G LG G ++ P +++ S S + Q+S G +HT A+ S+GK+ WGW
Sbjct: 239 YGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGARHTXALTSDGKLYGWGW---- 293
Query: 351 GTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 401
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 294 --------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 336
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 138/301 (45%), Gaps = 46/301 (15%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG + G+LG G+ RP V + + +A GGAH+ +T G +Y G +G+
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190
Query: 103 LGISENIGYSLEPLRISGLK-KEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGK 159
LG S++ L+P + L+ VV I+ +G + +T D ++ WG G+LG G
Sbjct: 191 LGHSDSED-QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG- 248
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
+ +P K++ L+G+ + G + SVA+T G V +WG G RLGHG + +
Sbjct: 249 -GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHV-- 305
Query: 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHAR 279
PR ++ L+G KV A G LH C E+G
Sbjct: 306 -------RRPRQVQGLQGKKVIAIATGSLHCVCCTEDG---------------------- 336
Query: 280 RPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEG 339
E+YTWG N+ G LG G+ + + P R+ V++V+CG HT A S
Sbjct: 337 --------EVYTWGDNDEGQLGDGTTNAIQRP-RLVAALQGKKVNRVACGSAHTLAWSTS 387
Query: 340 K 340
K
Sbjct: 388 K 388
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 168/385 (43%), Gaps = 59/385 (15%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA-CGGAHTLF-LTETGCVYATGLNDF 100
WG+ G+LG P C A +L+ + GG TLF +T G +YATG
Sbjct: 25 WGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQTLFAVTADGKLYATGYGAG 82
Query: 101 GQLGISENIGYS----LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLG 156
G+LGI S LE ++ +KK V +++G H A++ +GE+Y WG+ +G+LG
Sbjct: 83 GRLGIGGTESVSTPTLLESIQHVFIKK--VAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS 216
G ++ P +E L GI A G S VT G + +WG G GRLGH
Sbjct: 141 HGNRSP--CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD--- 195
Query: 217 ILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRVYIFGDRAVDKMLFQE 274
S + P+L++ L+G +V A +G + C+ ++ V+ +GD K+
Sbjct: 196 ------SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249
Query: 275 GNHARRP----------------------SLISGGELYTWGSNENGCLGIGSIDVLHSPE 312
+ + P +L G +YTWG + LG GS D + P
Sbjct: 250 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309
Query: 313 RVQGPFSESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVD 371
+VQG V ++ G H +E G++ TW G + GQLG G
Sbjct: 310 QVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTW------------GDNDEGQLGDGTTNA 356
Query: 372 YIHPTIVNFGENVKALQVSCGFNHT 396
P +V + K +V+CG HT
Sbjct: 357 IQRPRLVAALQGKKVNRVACGSAHT 381
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 53/252 (21%)
Query: 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201
G +Y WG N GQLG G + AKV +PT E L+ + Q G + AVT GK+ +
Sbjct: 20 GTIYGWGHNHRGQLG-GIEGAKV-KVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYAT 77
Query: 202 GAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYI 261
G G GRLG G S+ TP L++ ++ V +K A C+
Sbjct: 78 GYGAGGRLGIGGTESV---------STPTLLESIQHVFIKKVAVNSGGKHCL-------- 120
Query: 262 FGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES 321
+L S GE+Y+WG E+G LG G+ P ++
Sbjct: 121 --------------------ALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIE 160
Query: 322 PVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF 380
VD V+ G H+A ++ G + TWG G G+LGH + D + P +V
Sbjct: 161 VVD-VAAGGAHSACVTAAGDLYTWGKG------------RYGRLGHSDSEDQLKPKLVEA 207
Query: 381 GENVKALQVSCG 392
+ + + ++CG
Sbjct: 208 LQGHRVVDIACG 219
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 2 LGRSLTAMTKYYLKQDIKLGSKLGI----CKRWISSTLQRRFAAL-WGNGDYGRLGLGSL 56
LGR + K +K D G LG+ C S L + A WG GDY RLG GS
Sbjct: 245 LGRGGSDGCKVPMKIDSLTG--LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ RP + + A+A G H + TE G VY G ND GQLG P
Sbjct: 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ-RPR 361
Query: 117 RISGLK-KEVVQISTGYHHSSA 137
++ L+ K+V +++ G H+ A
Sbjct: 362 LVAALQGKKVNRVACGSAHTLA 383
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 326 VSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENV 384
V+ G KH A+S EG++ +WG +EDG +LGHGN P ++ +
Sbjct: 112 VNSGGKHCLALSSEGEVYSWG-------EAEDG-----KLGHGNRSPCDRPRVIESLRGI 159
Query: 385 KALQVSCGFNHTGAL 399
+ + V+ G H+ +
Sbjct: 160 EVVDVAAGGAHSACV 174
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 180/404 (44%), Gaps = 74/404 (18%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 22 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 79
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 80 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 138
Query: 160 KAAK-VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218
K ++P+ +++ + + A G + V +T G + + G G G+LG E L
Sbjct: 139 PMKKSMVPVQVQLD----VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---L 191
Query: 219 GFLRSTSEYTPRLI---------KELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVD 268
R + RL+ + G V+ + A G + I G VY FG
Sbjct: 192 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 251
Query: 269 KM-------------------------LFQEGNHARRPSLISGGELYTWGSNENGCLGIG 303
++ F G H + S G+ Y+ G E G LG+G
Sbjct: 252 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH-HTVCMDSEGKAYSLGRAEYGRLGLG 310
Query: 304 SIDVLHSPERVQGP--FSESP-VDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHS 359
E P S P V V+CG A++ +G++ WG G ++
Sbjct: 311 -----EGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY--------- 356
Query: 360 SGGQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 401
QLG G D D P + EN L VS G HT L++
Sbjct: 357 ---QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 18/205 (8%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 65
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 66 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 123
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 124 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 175
Query: 261 IFGDRAVDKMLFQEGNHARRPSLIS 285
G ++G R P L +
Sbjct: 176 TLG-------CGEQGQLGRVPELFA 193
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 37 RRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGGAHTLFLTE 88
R FA WG G +LG G E W PV + E + +++ GG HT+ L +
Sbjct: 346 RVFA--WGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 180/407 (44%), Gaps = 80/407 (19%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 33 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 91 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 149
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
K + +P +V+ + + A G + V +T G + + G G G+LG E L
Sbjct: 150 PMKKSM-VPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---LF 203
Query: 220 FLRSTSEYTPRLIKE----LEG------VKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269
R + RL+ L+ V+ + A G + I G VY FG +
Sbjct: 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263
Query: 270 M-------------------------LFQEGNHARRPSLISGGELYTWGSNENGCLGIG- 303
+ F G H + S G+ Y+ G E G LG+G
Sbjct: 264 LGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH-HTVCMDSEGKAYSLGRAEYGRLGLGE 322
Query: 304 -----SIDVLHSPERVQGPFSESP-VDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSED 356
SI L S P V V+CG A++ +G++ WG G ++
Sbjct: 323 GAEEKSIPTL---------ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY------ 367
Query: 357 GHSSGGQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 401
QLG G D D P + EN L VS G HT L++
Sbjct: 368 ------QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 18 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 76
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 134
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 135 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 186
Query: 261 IFG 263
G
Sbjct: 187 TLG 189
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 37 RRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGGAHTLFLTE 88
R FA WG G +LG G E W PV + E + +++ GG HT+ L +
Sbjct: 357 RVFA--WGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 161/378 (42%), Gaps = 73/378 (19%)
Query: 42 LWGNGDYGRLGLGS--LE-SRWRPV--VCSAFEKHSLKALACGGAHTLFLTETGCVYATG 96
+ GNGD G+LGLG LE R PV + A + ++ GG H L LT++G +Y+ G
Sbjct: 47 VCGNGDVGQLGLGEDILERKRLSPVAGIPDAVD------ISAGGMHNLVLTKSGDIYSFG 100
Query: 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQ 154
ND G LG + S + L + + IS G HS+ + DG ++ WG ++S+G
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQE 214
+GL K PI + + G A G + V +T GKV + G G+LG E
Sbjct: 161 MGLTIDGNKRTPI----DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE 216
Query: 215 SSILG--------FLRSTSEYTPRLIKELEGV-------------KVKIAAAGFLHSACI 253
SI G LR T R K E + I A G + +
Sbjct: 217 RSISGEGRRGKRDLLRPTQLIITR-AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQL 275
Query: 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYT-----------WGSNENGCLGI 302
+ F + K ++ H I+GG+ +T G E G LG+
Sbjct: 276 AHETKGKEFALTPI-KTELKDIRH------IAGGQHHTVILTTDLKCSVVGRPEYGRLGL 328
Query: 303 GSI-DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSS 360
G + DV+ P V+ +E V V CG + A++ +GK+ +WG G ++
Sbjct: 329 GDVKDVVEKPTIVK-KLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNN---------- 376
Query: 361 GGQLGHGNDVDYIHPTIV 378
QLG G+ D + P +V
Sbjct: 377 --QLGVGDGDDELEPIVV 392
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 87 TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQISTGYHHSSAITVDGEL 144
T G V G D GQLG+ E+I LE R+S + + V IS G H+ +T G++
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDI---LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 145 YMWGKNSNGQLGL------GKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198
Y +G N G LG + +I +P K C+S G S + G+V
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--------GDSHSACLLEDGRV 148
Query: 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258
+W GS R HG +G ++ TP I +EG A+G H + G+
Sbjct: 149 FAW---GSFRDSHGN----MGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGK 199
Query: 259 VYIFG 263
V+ G
Sbjct: 200 VFTVG 204
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 43 WGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFG 101
WGNG +LG +E R + + F +K +A G H LT+ + + GLN FG
Sbjct: 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFG 287
Query: 102 QLGISENI---GYSLEPLRISGLKKEVVQ-ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157
Q G+SE++ +P R++ V++ I+ G HHS ++ DG+LY G+ ++G+
Sbjct: 288 QCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
Query: 158 GKK------------AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205
K A+ +P+PTK+ + K A G SVAV G SWG G
Sbjct: 348 PKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF--KSVAAGSHHSVAVAQNGIAYSWGFGE 405
Query: 206 SGRLGHG 212
+ +G G
Sbjct: 406 TYAVGLG 412
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 8/209 (3%)
Query: 62 PVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL--RIS 119
P F K+++ LA G H LFL E G V+A G QLG + L+ L R
Sbjct: 195 PWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254
Query: 120 GLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGI 177
GL + V I++G +H A+T D +L WG N GQ G+ + ++ P ++ +
Sbjct: 255 GL-RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQES---SILGFLRSTSEYTPRLIKE 234
+ A G S+ ++ G + S G +G +++ + + P K
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKL 373
Query: 235 LEGVKVKIAAAGFLHSACIDENGRVYIFG 263
K K AAG HS + +NG Y +G
Sbjct: 374 NNVPKFKSVAAGSHHSVAVAQNGIAYSWG 402
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 43 WGNGDYGRLGLGSLESRW---RPVVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATGL 97
WG G LGLG L RP + + K + A GG HTL L E V++ G
Sbjct: 34 WGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93
Query: 98 NDFGQLG-ISENIGYSLE---------------------PLRISGLK-------KEVVQI 128
ND G LG + N L+ P +I +VVQ+
Sbjct: 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQL 153
Query: 129 STGYHHSSAITVDGELYMWG--KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186
+ + S A+ +GE+Y WG + + G LG + K+ P KV S Q A G
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK 213
Query: 187 EQSVAVTGGGKVLSWGAGGSGRLG 210
+ + + G V +WG G +LG
Sbjct: 214 DHILFLDEEGMVFAWGNGQQNQLG 237
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 93/240 (38%), Gaps = 37/240 (15%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK-------KAAKVIPIPTKVECLSGI 177
++ Y H +++ WG S +LGLG K ++ P + E
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLG----HGQESSILGFLRSTSEYTPRLIK 233
F A+G ++A+ V SWG G LG + +E +S+ +
Sbjct: 72 F----AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 234 ELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWG 293
ELE KI F A E +V A D M +L S GE+Y WG
Sbjct: 128 ELESTPAKIPRESFPPLA---EGHKVVQLA--ATDNM---------SCALFSNGEVYAWG 173
Query: 294 S---NENGCLGI--GSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWG 347
+ NE G LG I + +P +V FS+ + Q++ G H + EG + WG G
Sbjct: 174 TFRCNE-GILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNG 231
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 10 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 60
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 61 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 103
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208
+ A G S A+ GKV++WG G+
Sbjct: 104 V--DAIAAGAWASYALK-DGKVIAWGDDSDGQ 132
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 60/230 (26%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184
V I+ GY H A+ G++ WG N NGQL +P T+ SG+ A
Sbjct: 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQ----SGV--DAIAA 70
Query: 185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244
G S+A+ G +V++WG G ++++ RS V A
Sbjct: 71 GNYHSLALKDG-EVIAWGGNEDG------QTTVPAEARS---------------GVDAIA 108
Query: 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL---------ISGGELYTWGSN 295
AG S + ++G+V +GD + + + +L + G + WG N
Sbjct: 109 AGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 167
Query: 296 ENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWG 345
G + P Q S VD V+ G H+ A+ +GK++ WG
Sbjct: 168 YFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLALKDGKVIAWG 204
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 12 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 62
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 63 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 105
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208
+ A G S A+ GKV++WG G+
Sbjct: 106 V--DAIAAGAWASYALK-DGKVIAWGDDSDGQ 134
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 60/230 (26%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184
V I+ GY H A+ G++ WG N NGQL +P T+ SG+ A
Sbjct: 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQ----SGV--DAIAA 72
Query: 185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244
G S+A+ G +V++WG G ++++ RS V A
Sbjct: 73 GNYHSLALKDG-EVIAWGGNEDG------QTTVPAEARS---------------GVDAIA 110
Query: 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL---------ISGGELYTWGSN 295
AG S + ++G+V +GD + + + +L + G + WG N
Sbjct: 111 AGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 169
Query: 296 ENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWG 345
G + P Q S VD V+ G H+ A+ +GK++ WG
Sbjct: 170 YFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLALKDGKVIAWG 206
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 322 PVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGH 358
P QV+ G++ +A +S+G++ T G GS G F ++G
Sbjct: 264 PDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGE 300
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 346 WGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVN 379
W G SE+ G++ HGN +DY PTIV
Sbjct: 668 WMGMGQALSEETVYDNGRMVHGNILDYRVPTIVE 701
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 132 YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVA 191
Y H + + DG++ +G N NGQ + A I Q A G +V
Sbjct: 318 YTHYTVMYGDGQIAFFGNNDNGQCDVDDHAGPYI---------------QLAAGHNFTVT 362
Query: 192 VTGGGKVLSWGAGGSGRL 209
V +V+ WG L
Sbjct: 363 VNTLNQVMFWGDSPDNSL 380
>pdb|1NRI|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Hi0754 From Haemophilus Influenzae
Length = 306
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSV-AVTGGGKVLSWGAGGSGRLG 210
L + K++P+ + CL Q +L EQ V A GG+++ GAG SGRLG
Sbjct: 38 LXNEEDKLVPLAIE-SCLP-----QISLAVEQIVQAFQQGGRLIYIGAGTSGRLG 86
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 205 GSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG--RVYIF 262
G GH + +L + R + P L +E +GV F SA ID+NG R Y
Sbjct: 79 GPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGV--------FSGSAVIDDNGDLRFYYT 130
Query: 263 GDR 265
G R
Sbjct: 131 GHR 133
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A
Resolution
Length = 441
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 249 HSACI-DENGRVYIFGDRAVDK 269
H ACI +ENGR Y+FG+ DK
Sbjct: 25 HGACIVEENGRYYLFGEYKSDK 46
>pdb|4HUT|A Chain A, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
pdb|4HUT|B Chain B, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
Length = 191
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 27 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 86
>pdb|1G5R|A Chain A, The Three-dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo
Form
Length = 196
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVXATGF 91
>pdb|1G5T|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo-Atp
Form
pdb|1G64|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
pdb|1G64|B Chain B, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
Length = 196
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 91
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 258 RVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGS----IDVLHSPER 313
R + F D V+ +L + R P I E+ + L I + PE
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 304
Query: 314 VQGPFSESPVDQVSCGWKHTAAISEGKILTWGW 346
V+G S++ + + GW + EG +T+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 258 RVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGS----IDVLHSPER 313
R + F D V+ +L + R P I E+ + L I + PE
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 304
Query: 314 VQGPFSESPVDQVSCGWKHTAAISEGKILTWGW 346
V+G S++ + + GW + EG +T+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 258 RVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGS----IDVLHSPER 313
R + F D V+ +L + R P I E+ + L I + PE
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 304
Query: 314 VQGPFSESPVDQVSCGWKHTAAISEGKILTWGW 346
V+G S++ + + GW + EG +T+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 258 RVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGS----IDVLHSPER 313
R + F D V+ +L + R P I E+ + L I + PE
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 304
Query: 314 VQGPFSESPVDQVSCGWKHTAAISEGKILTWGW 346
V+G S++ + + GW + EG +T+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
Length = 397
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG---GSGRLGH 211
L LG + I + + + +F K+ ++++ + G + + G GR+G
Sbjct: 85 LVLGPSPPRDINVAAENDVALTVFQKEWV---DEAIKLWDGSSTMKYHINFDSGMGRIGI 141
Query: 212 GQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYI 261
+ + GFL+S E P L ELEGV A A + ++ D+ ++
Sbjct: 142 RERKELKGFLKSL-EGAPFL--ELEGVYTHFATADEVETSYFDKQYNTFL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,383,933
Number of Sequences: 62578
Number of extensions: 606705
Number of successful extensions: 1609
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 101
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)