Query 015656
Match_columns 403
No_of_seqs 287 out of 2146
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 9.2E-52 2E-56 377.6 26.7 341 28-399 60-462 (476)
2 KOG1427 Uncharacterized conser 100.0 3.7E-48 8E-53 332.3 17.3 319 24-402 65-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-43 6.8E-48 321.7 24.4 310 17-337 104-463 (476)
4 KOG1427 Uncharacterized conser 100.0 1.3E-39 2.8E-44 279.7 16.4 318 34-401 16-345 (443)
5 KOG0783 Uncharacterized conser 100.0 5.7E-28 1.2E-32 232.0 14.1 269 36-346 140-415 (1267)
6 KOG0783 Uncharacterized conser 99.9 2.2E-24 4.7E-29 207.6 15.7 232 18-266 178-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 2.3E-23 4.9E-28 208.0 21.9 322 9-399 469-892 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.6E-22 3.4E-27 202.1 19.7 285 71-402 479-837 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 4.1E-13 9E-18 89.2 4.3 50 338-399 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.4 1.4E-12 3E-17 86.7 5.4 50 37-86 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 3.2E-11 7E-16 69.6 4.1 30 125-154 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 4.9E-11 1.1E-15 68.8 4.3 30 73-102 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 8E-12 1.7E-16 122.8 -5.4 134 124-268 15-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 2E-11 4.3E-16 120.0 -7.8 181 61-258 4-198 (850)
15 PF11725 AvrE: Pathogenicity f 94.4 0.14 3E-06 56.0 7.9 117 231-403 696-815 (1774)
16 KOG3669 Uncharacterized conser 94.2 6.3 0.00014 38.9 21.2 107 78-200 190-298 (705)
17 KOG0943 Predicted ubiquitin-pr 92.0 0.012 2.7E-07 61.3 -3.9 133 124-268 375-508 (3015)
18 KOG0291 WD40-repeat-containing 89.8 26 0.00057 36.0 24.0 119 21-152 302-424 (893)
19 KOG0943 Predicted ubiquitin-pr 89.3 0.05 1.1E-06 57.0 -2.4 130 70-204 373-505 (3015)
20 PF11725 AvrE: Pathogenicity f 88.7 2.2 4.7E-05 47.3 8.9 112 171-337 697-812 (1774)
21 KOG1408 WD40 repeat protein [F 88.0 8.1 0.00018 39.3 11.6 100 19-148 135-247 (1080)
22 PF07569 Hira: TUP1-like enhan 85.3 5.7 0.00012 34.8 8.4 80 122-202 12-93 (219)
23 PF07569 Hira: TUP1-like enhan 84.1 4.2 9E-05 35.7 7.0 27 239-265 14-40 (219)
24 KOG3669 Uncharacterized conser 81.9 15 0.00032 36.5 10.1 70 72-147 228-299 (705)
25 smart00706 TECPR Beta propelle 74.4 6.4 0.00014 23.0 3.6 25 123-147 8-33 (35)
26 cd00200 WD40 WD40 domain, foun 74.0 59 0.0013 28.2 27.8 98 29-150 22-123 (289)
27 smart00706 TECPR Beta propelle 73.4 8.3 0.00018 22.5 3.9 25 71-95 8-33 (35)
28 COG4257 Vgb Streptogramin lyas 73.2 14 0.0003 33.4 6.6 132 34-201 69-205 (353)
29 cd00200 WD40 WD40 domain, foun 70.7 70 0.0015 27.7 21.6 67 72-150 137-207 (289)
30 KOG4693 Uncharacterized conser 68.9 62 0.0013 29.1 9.7 19 328-346 292-310 (392)
31 KOG1274 WD40 repeat protein [G 66.4 1.6E+02 0.0035 31.2 13.4 55 39-95 27-81 (933)
32 KOG1240 Protein kinase contain 64.6 1.4E+02 0.003 33.0 12.7 77 71-152 1049-1130(1431)
33 COG4257 Vgb Streptogramin lyas 63.7 1.2E+02 0.0025 27.7 10.4 138 79-262 62-205 (353)
34 KOG1900 Nuclear pore complex, 62.6 1.3E+02 0.0029 33.3 12.4 64 136-203 93-156 (1311)
35 KOG0315 G-protein beta subunit 61.4 1.2E+02 0.0026 27.1 17.8 67 178-264 126-196 (311)
36 PF12341 DUF3639: Protein of u 58.5 27 0.00059 19.3 3.6 24 71-94 2-25 (27)
37 PHA02713 hypothetical protein; 57.0 2E+02 0.0043 29.3 12.5 20 79-98 341-360 (557)
38 PF06739 SBBP: Beta-propeller 52.3 17 0.00036 21.8 2.4 18 81-98 15-32 (38)
39 KOG0646 WD40 repeat protein [G 52.2 2.3E+02 0.0051 27.5 16.7 98 73-187 84-185 (476)
40 KOG0291 WD40-repeat-containing 51.8 3.1E+02 0.0066 28.7 24.7 62 27-98 156-219 (893)
41 KOG0646 WD40 repeat protein [G 51.3 2.4E+02 0.0053 27.4 15.2 90 29-134 94-186 (476)
42 KOG2055 WD40 repeat protein [G 50.7 2.5E+02 0.0054 27.4 15.5 77 133-237 357-433 (514)
43 KOG1900 Nuclear pore complex, 49.9 4.2E+02 0.009 29.7 14.9 166 36-208 97-276 (1311)
44 KOG1274 WD40 repeat protein [G 48.9 3.6E+02 0.0079 28.8 13.7 116 227-346 47-167 (933)
45 TIGR01063 gyrA DNA gyrase, A s 48.4 3.7E+02 0.0081 28.8 16.8 166 72-261 536-714 (800)
46 PHA03098 kelch-like protein; P 44.4 3.4E+02 0.0074 27.2 14.8 16 133-149 382-397 (534)
47 PRK05560 DNA gyrase subunit A; 42.2 4.7E+02 0.01 28.1 15.9 166 74-259 542-715 (805)
48 PF03785 Peptidase_C25_C: Pept 41.2 65 0.0014 23.1 4.3 42 112-154 6-48 (81)
49 PF04762 IKI3: IKI3 family; I 40.9 5.2E+02 0.011 28.3 24.2 29 70-98 426-456 (928)
50 KOG4441 Proteins containing BT 40.6 2.7E+02 0.006 28.4 10.5 54 286-346 475-530 (571)
51 KOG0279 G protein beta subunit 40.4 2.9E+02 0.0062 25.2 20.0 102 27-147 27-132 (315)
52 KOG1240 Protein kinase contain 40.1 5.8E+02 0.013 28.6 13.1 117 21-149 1053-1180(1431)
53 PF04841 Vps16_N: Vps16, N-ter 38.3 3.8E+02 0.0083 26.0 21.4 68 71-147 81-152 (410)
54 PF07250 Glyoxal_oxid_N: Glyox 38.2 1.6E+02 0.0035 26.2 7.4 113 86-205 74-190 (243)
55 PLN03215 ascorbic acid mannose 38.0 1.4E+02 0.003 28.6 7.3 61 73-148 162-225 (373)
56 KOG1034 Transcriptional repres 38.0 95 0.0021 28.8 5.9 57 136-202 323-381 (385)
57 KOG0315 G-protein beta subunit 37.1 3.1E+02 0.0068 24.6 15.8 99 27-149 94-196 (311)
58 KOG0649 WD40 repeat protein [G 36.2 3.2E+02 0.0069 24.5 15.2 33 69-102 61-93 (325)
59 TIGR03300 assembly_YfgL outer 34.6 4E+02 0.0087 25.1 12.0 17 187-203 321-337 (377)
60 PF07646 Kelch_2: Kelch motif; 34.6 45 0.00097 20.9 2.6 16 331-346 4-19 (49)
61 KOG2111 Uncharacterized conser 33.8 3.9E+02 0.0085 24.8 12.9 26 176-202 94-119 (346)
62 KOG0293 WD40 repeat-containing 33.6 4.5E+02 0.0098 25.4 13.8 69 122-203 395-469 (519)
63 PF13418 Kelch_4: Galactose ox 33.5 44 0.00095 20.9 2.4 17 187-203 4-20 (49)
64 KOG0649 WD40 repeat protein [G 31.3 3.9E+02 0.0084 24.0 16.0 69 28-96 71-142 (325)
65 PF01436 NHL: NHL repeat; Int 30.9 95 0.0021 16.9 3.2 17 134-150 5-21 (28)
66 KOG4441 Proteins containing BT 30.2 4.5E+02 0.0098 26.9 10.1 22 243-264 509-530 (571)
67 KOG1230 Protein containing rep 30.1 4.8E+02 0.01 25.4 9.3 115 133-265 124-251 (521)
68 PLN02153 epithiospecifier prot 29.7 4.7E+02 0.01 24.4 15.5 17 188-204 307-323 (341)
69 TIGR03300 assembly_YfgL outer 29.4 4.9E+02 0.011 24.5 12.5 19 248-266 321-339 (377)
70 PRK13979 DNA topoisomerase IV 29.2 8E+02 0.017 27.0 20.7 133 70-211 551-696 (957)
71 PF13964 Kelch_6: Kelch motif 28.4 59 0.0013 20.4 2.4 16 331-346 4-19 (50)
72 KOG0278 Serine/threonine kinas 27.8 4.5E+02 0.0098 23.6 13.6 37 60-97 134-172 (334)
73 PLN03215 ascorbic acid mannose 27.8 2.7E+02 0.0059 26.6 7.5 62 178-263 161-225 (373)
74 TIGR01063 gyrA DNA gyrase, A s 27.8 7.9E+02 0.017 26.4 20.4 171 17-202 535-716 (800)
75 PF13854 Kelch_5: Kelch motif 27.0 76 0.0017 19.2 2.6 17 330-346 6-22 (42)
76 PF03785 Peptidase_C25_C: Pept 26.8 1.1E+02 0.0024 22.0 3.5 32 72-103 17-49 (81)
77 PHA02790 Kelch-like protein; P 26.6 6E+02 0.013 25.2 10.2 17 133-150 355-371 (480)
78 PF04841 Vps16_N: Vps16, N-ter 26.5 6E+02 0.013 24.6 19.1 25 177-201 217-243 (410)
79 PHA03092 semaphorin-like prote 26.2 95 0.002 23.7 3.3 43 254-296 39-81 (134)
80 PHA03098 kelch-like protein; P 25.8 6.8E+02 0.015 25.0 15.2 18 133-151 335-352 (534)
81 PF00167 FGF: Fibroblast growt 25.8 3.1E+02 0.0068 21.1 8.9 65 179-262 2-66 (122)
82 KOG1408 WD40 repeat protein [F 25.4 8.1E+02 0.018 25.8 12.5 103 76-203 138-248 (1080)
83 PF13938 DUF4213: Domain of un 25.0 89 0.0019 22.7 3.0 22 175-196 10-31 (87)
84 PF13938 DUF4213: Domain of un 23.2 1.2E+02 0.0027 21.9 3.5 23 235-257 9-31 (87)
85 KOG0307 Vesicle coat complex C 23.1 1.6E+02 0.0035 31.9 5.5 34 178-211 255-291 (1049)
86 TIGR03548 mutarot_permut cycli 22.7 6.1E+02 0.013 23.3 12.3 17 81-98 116-132 (323)
87 PF02239 Cytochrom_D1: Cytochr 22.6 6.8E+02 0.015 23.9 15.2 65 71-149 27-96 (369)
88 KOG0278 Serine/threonine kinas 22.5 5.8E+02 0.012 23.0 11.3 39 111-149 132-172 (334)
89 KOG0293 WD40 repeat-containing 22.1 3.5E+02 0.0077 26.1 6.9 72 12-97 391-469 (519)
90 PF07250 Glyoxal_oxid_N: Glyox 21.7 3.3E+02 0.0072 24.3 6.5 75 75-150 113-189 (243)
91 PF00167 FGF: Fibroblast growt 20.2 4.1E+02 0.0089 20.5 9.2 65 73-147 2-66 (122)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9.2e-52 Score=377.64 Aligned_cols=341 Identities=28% Similarity=0.490 Sum_probs=273.4
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCc-cceeeeCcc--CCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
|....+ ....||+||+|..+|||.+..... ..|++.++. +...|++++||..|+++|++||.||+||.|..|+||
T Consensus 60 ~~~~~~--~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 60 HTHLLV--KMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred chhhhh--heeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 444555 556699999999999999976554 889998877 567899999999999999999999999999999999
Q ss_pred CCC---------------CCCceecceEeecC-----cCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcc
Q 015656 105 ISE---------------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV 164 (403)
Q Consensus 105 ~~~---------------~~~~~~~p~~v~~~-----~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~ 164 (403)
... .......|..++.. +.++++++||++++++|+++|+||.||....+.++.+...+..
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~ 217 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ 217 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccc
Confidence 876 22345678888752 2379999999999999999999999999999999888554433
Q ss_pred ----cccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccc-cCce
Q 015656 165 ----IPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVK 239 (403)
Q Consensus 165 ----~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~ 239 (403)
..+|.++. ...|+++++|.+|.++|+++|+||.||++..||||....+. ...+..+..+ .-..
T Consensus 218 k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~---------~~~~~lv~~~f~i~~ 285 (476)
T COG5184 218 KTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER---------LKLVVLVGDPFAIRN 285 (476)
T ss_pred cceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhh---------cccccccCChhhhhh
Confidence 35555554 45799999999999999999999999999999999987532 2222222221 1124
Q ss_pred EEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCccCCeEec----------------------------CCcEEE
Q 015656 240 VKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS----------------------------GGELYT 291 (403)
Q Consensus 240 i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~----------------------------~g~v~~ 291 (403)
|++|+||.+|++||+++|++|+||.|.++|++.++. ...+.... +|.||+
T Consensus 286 i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~--~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a 363 (476)
T COG5184 286 IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD--GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYA 363 (476)
T ss_pred hhhcccCcceEEEEcCCCeEEEeccchhcccccCcc--cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEE
Confidence 789999999999999999999999999999999811 11111110 899999
Q ss_pred eecCCCCCcCCCC--CCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCC
Q 015656 292 WGSNENGCLGIGS--IDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGN 368 (403)
Q Consensus 292 wG~n~~gqlG~g~--~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~ 368 (403)
||.++.+|||... +.....|.++.. ..++.+++||..|.++.+ +|+||.||+ |.+||||.++
T Consensus 364 ~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~ 428 (476)
T COG5184 364 FGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGP 428 (476)
T ss_pred ecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCc
Confidence 9999999999997 555666666552 257999999999999999 999999999 6899999998
Q ss_pred C-CCccccEEEec--CCCceEEEEecCCCceEEE
Q 015656 369 D-VDYIHPTIVNF--GENVKALQVSCGFNHTGAL 399 (403)
Q Consensus 369 ~-~~~~~p~~v~~--~~~~~~~~i~~G~~~t~~l 399 (403)
. ++...|+.++. .+...++..-||..++++.
T Consensus 429 ~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~ 462 (476)
T COG5184 429 KEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIE 462 (476)
T ss_pred hhhhccccccccccccCCCceEEeccCcceEEEe
Confidence 7 45777888873 5666776677777766654
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.7e-48 Score=332.29 Aligned_cols=319 Identities=27% Similarity=0.449 Sum_probs=271.6
Q ss_pred eeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCC
Q 015656 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQL 103 (403)
Q Consensus 24 ~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gql 103 (403)
|...|++++. .++..|.||.|..||||+++...+..|+.|+.|+..+|++.+||++|+++||++|.||+||.|.+|||
T Consensus 65 ~~aaH~vli~--megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQl 142 (443)
T KOG1427|consen 65 CAAAHCVLID--MEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQL 142 (443)
T ss_pred cchhhEEEEe--cccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccc
Confidence 5558999998 88889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCC------------cccccCeEE
Q 015656 104 GISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA------------KVIPIPTKV 171 (403)
Q Consensus 104 G~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~------------~~~~~p~~~ 171 (403)
|.++.......|.++-.....|+.|+||.+|++.|+..+.+.++|--.|||||++.... +..|.|..+
T Consensus 143 Glgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 143 GLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred cccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 99976655555554444456899999999999999999999999999999999987643 234677888
Q ss_pred eecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeecccc--CceEEEEEecCce
Q 015656 172 ECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--GVKVKIAAAGFLH 249 (403)
Q Consensus 172 ~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~~ 249 (403)
..+.+.+|++++||.+|+++++++++||+||.+-||+||+... .++..|.+++.++ +.--..+.||+..
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq---------KDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ---------KDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccc---------hhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 8889999999999999999999999999999999999999885 6677888777553 4456789999999
Q ss_pred eEEEecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecC
Q 015656 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCG 329 (403)
Q Consensus 250 ~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G 329 (403)
++.+.+-|.+|.||.+... -+....|.++. ++..+++..+.|+
T Consensus 294 Sl~v~e~G~Lf~~g~~k~~------------------------------------ge~~mypkP~~-dlsgwnl~~~~~~ 336 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKNN------------------------------------GEDWMYPKPMM-DLSGWNLRWMDSG 336 (443)
T ss_pred ceeecccceeEEeeccccC------------------------------------cccccCCCchh-hcCCccCCCcCcc
Confidence 9999999999999987632 12223444444 4577899999999
Q ss_pred CCeEEEEECCcEEEecCCCCCCCcccCCCCCCccc-cCCCC-CCccccEEEecCCCceEEEEecCCCceEEEEee
Q 015656 330 WKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQL-GHGND-VDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 402 (403)
Q Consensus 330 ~~h~~~lt~g~v~~wG~~~~~~~~~~~g~N~~gqL-G~g~~-~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~~~ 402 (403)
..|.++-.|.....||.. .+|.+ |.+.. .....|.+++.+.++++.+|++|+.||++|++.
T Consensus 337 ~~h~~v~ad~s~i~wg~~------------~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 337 SMHHFVGADSSCISWGHA------------QYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ceeeeecccccccccccc------------cccccccCccccccccCccccchhcceeccceeeccceEEEEEcc
Confidence 999887669999999984 44544 44443 356789999999999999999999999999864
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-43 Score=321.72 Aligned_cols=310 Identities=27% Similarity=0.419 Sum_probs=246.0
Q ss_pred cccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCC----------------CCccceeeeCc----cCCCceEEE
Q 015656 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL----------------ESRWRPVVCSA----FEKHSLKAL 76 (403)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~----------------~~~~~p~~v~~----~~~~~i~~i 76 (403)
-.+..++||..|+..+. .|+.||+||.|..|+||.-.. .....|..++. ....+|+++
T Consensus 104 ~~i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l 181 (476)
T COG5184 104 ASIIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKL 181 (476)
T ss_pred eeeEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEe
Confidence 34567889999999998 889999999999999998751 12467888876 234589999
Q ss_pred EeCCcceEEEecCCcEEEEEcCCCCCCCCCCCC-C----ceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCC
Q 015656 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENI-G----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (403)
Q Consensus 77 ~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~-~----~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 151 (403)
+||++++++|+++|+||+||.+..+.++.+... . ....|..++ ...|+++++|.+|.++|+++|+||+||+|.
T Consensus 182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~q 259 (476)
T COG5184 182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQ 259 (476)
T ss_pred ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCc
Confidence 999999999999999999999999888887322 2 223444444 459999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCeEEee-cCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccce
Q 015656 152 NGQLGLGKKAAKVIPIPTKVEC-LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (403)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~-~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~ 230 (403)
.||||....+.... +..+.. +.-..|+.|+||.+|+++|+++|+||+||.|.+||||.++..+. ......|.
T Consensus 260 kgqlG~~~~e~~~~--~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~-----~a~~tk~~ 332 (476)
T COG5184 260 KGQLGRPTSERLKL--VVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332 (476)
T ss_pred ccccCCchhhhccc--ccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc-----ceeecccc
Confidence 99999987766322 222221 22234789999999999999999999999999999999833211 12344555
Q ss_pred eeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccC--CCCccCCeEec--------------------CCc
Q 015656 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLIS--------------------GGE 288 (403)
Q Consensus 231 ~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~--~~~~~~p~~v~--------------------~g~ 288 (403)
....+.+..|..+++|..|+++|..+|.||+||.+..+|||..+ ......|.++. +++
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gs 412 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGS 412 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCc
Confidence 55566677799999999999999999999999999999999988 44444444333 889
Q ss_pred EEEeecCCCCCcCCCCC-CccccceeeeCC-CCCCCEEEEecCCCeEEEEE
Q 015656 289 LYTWGSNENGCLGIGSI-DVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS 337 (403)
Q Consensus 289 v~~wG~n~~gqlG~g~~-~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~lt 337 (403)
||+||++++|+||.+.. .....|+.+..+ ++...++..-||....+...
T Consensus 413 vy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 413 VYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred eEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 99999999999999854 556667777643 45678888889888888765
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=279.72 Aligned_cols=318 Identities=24% Similarity=0.352 Sum_probs=253.1
Q ss_pred ccccceEEEEecCCCCccCCCC---CCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCCCCCCCCCC
Q 015656 34 TLQRRFAALWGNGDYGRLGLGS---LESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISEN 108 (403)
Q Consensus 34 ~~~~g~v~~~G~n~~gqlG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 108 (403)
+..-|+++.+|.-..-+.|--+ ..+...|.++..+.+.+|+-|++| ..|+++|+-+|+.|.||.|..||||.+ +
T Consensus 16 e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D 94 (443)
T KOG1427|consen 16 EEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-D 94 (443)
T ss_pred hcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-c
Confidence 3356677777766655555432 336778999999998899999877 679999999999999999999999999 6
Q ss_pred CCceecceEeecCcC-ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC
Q 015656 109 IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (403)
Q Consensus 109 ~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~ 187 (403)
......|+.|+.+.. +|++.+||++|+++|+++|+||++|.|.+||||.++........|.. .....+|+.|+||.+
T Consensus 95 ~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~--~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 95 MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLP--CVVSDEVTNVACGAD 172 (443)
T ss_pred hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCc--cccCccceeeccccc
Confidence 667778999998876 99999999999999999999999999999999999877644333322 223447999999999
Q ss_pred ceEEEeCCCcEEEeeCCCCCCcCCCCCCccccc-----ccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEE
Q 015656 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF-----LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (403)
Q Consensus 188 ~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~w 262 (403)
+++.|+..+.+.++|-..|||||++....+.-. .--.....|..|..+++..|++++||.+|+++++++++||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 999999999999999999999999986554211 111234457778888899999999999999999999999999
Q ss_pred eCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcE
Q 015656 263 GDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKI 341 (403)
Q Consensus 263 G~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v 341 (403)
|-..+|+||.....+...|++++ +| ..++.--.++.||+..++++. -|.+
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik---~F--------------------------d~~~rg~~~~~~g~t~Sl~v~e~G~L 303 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIK---VF--------------------------DRNNRGPPNAILGYTGSLNVAEGGQL 303 (443)
T ss_pred ccccccccccccchhhHHHHHHH---Hh--------------------------cCCCCCCcceeeecccceeeccccee
Confidence 99999999888777666666554 00 123344557889999999999 9999
Q ss_pred EEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEEEEecCCCceEEEEe
Q 015656 342 LTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 401 (403)
Q Consensus 342 ~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~~ 401 (403)
|.||... .+-++...|.++..+.+..+..+.||..|.++=.+
T Consensus 304 f~~g~~k------------------~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~ad 345 (443)
T KOG1427|consen 304 FMWGKIK------------------NNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVGAD 345 (443)
T ss_pred EEeeccc------------------cCcccccCCCchhhcCCccCCCcCccceeeeeccc
Confidence 9999742 11234456777777788888889999999877544
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=5.7e-28 Score=232.02 Aligned_cols=269 Identities=28% Similarity=0.406 Sum_probs=207.3
Q ss_pred ccceEEEEecCCCCccCCCCCCCccceeeeCccC--CCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCcee
Q 015656 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (403)
Q Consensus 36 ~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~ 113 (403)
...+||+||.|....||+++..+...|.+|..|. +.-+.+|+.+..|++++++.|+||++|.+.-|.||.+ .....+
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~g-deq~~~ 218 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFG-DEQYNF 218 (1267)
T ss_pred CccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcC-cccccc
Confidence 4566999999999999999999999999999885 4558899999999999999999999999999999999 777778
Q ss_pred cceEeecCcC-ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeec--CCc-eEEEEEeCCCce
Q 015656 114 EPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SGI-FTKQAALGFEQS 189 (403)
Q Consensus 114 ~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~--~~~-~i~~i~~G~~~~ 189 (403)
.|..|+.+.. ++.+|++...|+++||++|.||+||.|..+|||..+...+ ...|..+... .+. .|+.|+||..|+
T Consensus 219 iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 219 IPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred cccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhcchhhhhhhhccccee
Confidence 8988888554 9999999999999999999999999999999999876542 3444444422 222 699999999999
Q ss_pred EEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcce
Q 015656 190 VAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (403)
Q Consensus 190 ~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gq 269 (403)
++-+.. .||+||.| .||||..+. ......|..+..+. ..|..|+|...-|+++++++.+|++-+-..-.
T Consensus 298 Vawt~~-~VY~wGlN-~GQlGi~~n--------~~~Vt~Pr~l~~~~-~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLN-NGQLGISDN--------ISVVTTPRRLAGLL-SPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred eeeecc-eEEEeccc-CceecCCCC--------Cceeecchhhcccc-cceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 999975 89999997 599998776 24455665443322 37999999999999999999999986543222
Q ss_pred ecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecC
Q 015656 270 MLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 346 (403)
Q Consensus 270 lg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~ 346 (403)
+-.. ..... +|...| -|... ...++.+..+...-.+++| -|+||.|=.
T Consensus 367 ~~~n--~~~lk-------s~~V~g----------------g~l~~----~~~~~~k~~a~~~kll~lte~g~Vy~w~s 415 (1267)
T KOG0783|consen 367 LPFN--VDFLK-------SLKVTG----------------GPLSL----TRFNVRKLLASENKLLVLTELGEVYEWDS 415 (1267)
T ss_pred cCcc--hhccc-------eeEEec----------------Cccch----hhhhhhhcchhhhheeeeccCCeEEEEec
Confidence 2110 00000 111111 01111 1135666677777789999 999999975
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=2.2e-24 Score=207.65 Aligned_cols=232 Identities=22% Similarity=0.340 Sum_probs=180.7
Q ss_pred ccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEc
Q 015656 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (403)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~ 97 (403)
...++.++.+|++|++ ++|+||+||.+..|+||.|+......|++|+.+.+.+|.+|++...|+++||++|.||+||.
T Consensus 178 ~~~qV~l~kfHSvfl~--~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~Gl 255 (1267)
T KOG0783|consen 178 LFSQVQLSKFHSVFLT--EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGL 255 (1267)
T ss_pred HHHHHHHhhceeeEec--CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeec
Confidence 3455788899999999 88889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCceecceEeecCc----CceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEee
Q 015656 98 NDFGQLGISENIGYSLEPLRISGLK----KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173 (403)
Q Consensus 98 n~~gqlG~~~~~~~~~~p~~v~~~~----~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~ 173 (403)
|.++|||..+.......|.+|.... ..|+-|++|..|+++-++. .||+||.| .||||..+. ...+..|+.+..
T Consensus 256 N~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n-~~~Vt~Pr~l~~ 332 (1267)
T KOG0783|consen 256 NGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN-ISVVTTPRRLAG 332 (1267)
T ss_pred CcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-Cceeecchhhcc
Confidence 9999999987666555666554221 1799999999999999965 69999997 599998776 446778876643
Q ss_pred cCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeecc----ccCceEEEEEecCce
Q 015656 174 LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKE----LEGVKVKIAAAGFLH 249 (403)
Q Consensus 174 ~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~----~~~~~i~~i~~G~~~ 249 (403)
...++..|+|...-++++++++.+|++-+- .|.-.... .......++.. +....+.+..+...-
T Consensus 333 -~~~~v~~v~a~~~ATVc~~~~~~i~~~ady--~~~k~~~n---------~~~lks~~V~gg~l~~~~~~~~k~~a~~~k 400 (1267)
T KOG0783|consen 333 -LLSPVIHVVATTRATVCLLQNNSIIAFADY--NQVKLPFN---------VDFLKSLKVTGGPLSLTRFNVRKLLASENK 400 (1267)
T ss_pred -cccceEEEEecCccEEEEecCCcEEEEecc--cceecCcc---------hhccceeEEecCccchhhhhhhhcchhhhh
Confidence 345799999999999999999999998542 22211111 00001111110 011135566677777
Q ss_pred eEEEecCCcEEEEeCCC
Q 015656 250 SACIDENGRVYIFGDRA 266 (403)
Q Consensus 250 ~~~l~~~G~v~~wG~n~ 266 (403)
.+++|+-|+||+|-.+.
T Consensus 401 ll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 401 LLVLTELGEVYEWDSKN 417 (1267)
T ss_pred eeeeccCCeEEEEecCC
Confidence 89999999999997654
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-23 Score=207.99 Aligned_cols=322 Identities=20% Similarity=0.267 Sum_probs=222.9
Q ss_pred eeeeEEeccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEec
Q 015656 9 MTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE 88 (403)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~ 88 (403)
..++...+..+..+.++..+.+++...++|+||.-|... ++|.-.......-..++ .+|++|+.|-....++.-
T Consensus 469 L~e~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 469 LPEFLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred chhhhccccCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeec
Confidence 345555566677778888888888888999999999776 66765544433333333 469999999888877754
Q ss_pred --CCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccc
Q 015656 89 --TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (403)
Q Consensus 89 --~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~ 166 (403)
+|-++.-|+.. .....-..++.-..+|+.+.+...-.-.+.+||++|..|....- ...
T Consensus 543 A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~----------~n~ 602 (3738)
T KOG1428|consen 543 AGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR----------VNV 602 (3738)
T ss_pred cCcceEEeccCcc----------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE----------ecc
Confidence 45555555321 11112223333445888886655545578999999999864320 112
Q ss_pred cCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcc-----------------------------
Q 015656 167 IPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSI----------------------------- 217 (403)
Q Consensus 167 ~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~----------------------------- 217 (403)
....+..+++.-|.+++.|..|.++++.+|+||+||-|+.+|+|+-...+.
T Consensus 603 SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~V 682 (3738)
T KOG1428|consen 603 SSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSV 682 (3738)
T ss_pred hHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcch
Confidence 234456677888999999999999999999999999999999998542221
Q ss_pred -------------------------------------------------------------cccccccccccceeec---
Q 015656 218 -------------------------------------------------------------LGFLRSTSEYTPRLIK--- 233 (403)
Q Consensus 218 -------------------------------------------------------------~~~~~~~~~~~p~~i~--- 233 (403)
....++.....|..+.
T Consensus 683 Ca~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq 762 (3738)
T KOG1428|consen 683 CAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQ 762 (3738)
T ss_pred hhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeecc
Confidence 0001111122222222
Q ss_pred cccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCcccccee
Q 015656 234 ELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPER 313 (403)
Q Consensus 234 ~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~ 313 (403)
...+.++++|+||..|+++|.++++||.+|+ |.+||||.|++.....|++
T Consensus 763 ~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~------------------------------~~HGQLG~GDt~Sk~~Pq~ 812 (3738)
T KOG1428|consen 763 GPHDVKVSSVSCGNFHTVLLASDRRVFTFGS------------------------------NCHGQLGVGDTLSKNTPQQ 812 (3738)
T ss_pred CCcceeEEEEeccCceEEEEecCCcEEEecC------------------------------CcccccCcCccccCCCcce
Confidence 1224589999999999999999987776655 4566666777777778888
Q ss_pred eeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCC---ccccEEEecCC---CceE
Q 015656 314 VQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVD---YIHPTIVNFGE---NVKA 386 (403)
Q Consensus 314 v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~---~~~p~~v~~~~---~~~~ 386 (403)
+.. +++..+++|++|++|++++. ||+||++|.- ..|||+..--+. ...|.++..+. +.+.
T Consensus 813 V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF------------~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A 879 (3738)
T KOG1428|consen 813 VIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAF------------GKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFA 879 (3738)
T ss_pred EEc-CCCCceEEEecCCCceEEEecCCcEEEeccc------------cCccccCccccccccccCCCcCCCCCccccccc
Confidence 774 36778999999999999999 9999999985 569999764322 34577776432 4566
Q ss_pred EEEecCCCceEEE
Q 015656 387 LQVSCGFNHTGAL 399 (403)
Q Consensus 387 ~~i~~G~~~t~~l 399 (403)
-.|.+-++.|++-
T Consensus 880 ~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 880 GWIGADGDSSIIH 892 (3738)
T ss_pred eeeccCCCcceee
Confidence 7788877777754
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-22 Score=202.07 Aligned_cols=285 Identities=21% Similarity=0.264 Sum_probs=203.3
Q ss_pred CceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEec--CCcEEEEE
Q 015656 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV--DGELYMWG 148 (403)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~--~G~v~~wG 148 (403)
..-+.+.+++.++++-+.+|+||..|... .+|..+..... +.+. ++++|++|+.|-+-.+++.- +|.++.-|
T Consensus 479 ~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nW---mEL~-l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~ 552 (3738)
T KOG1428|consen 479 PQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNW---MELC-LPEPIVQISVGIDTIMFRSGAGHGWIASVD 552 (3738)
T ss_pred chheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCce---EEec-CCCceEEEEeccchhheeeccCcceEEecc
Confidence 34567889999999999999999998653 34544333221 2222 44699999999998888765 45555554
Q ss_pred cCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccccccccc
Q 015656 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (403)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~ 228 (403)
+... .| .-+++...+..+|+++.+...---+++++|++|..|.... .....
T Consensus 553 D~k~--~~----------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm-----------------~~n~S 603 (3738)
T KOG1428|consen 553 DKKR--NG----------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM-----------------RVNVS 603 (3738)
T ss_pred Cccc--cc----------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-----------------Eecch
Confidence 3221 11 1111112234578888766655678899999999987432 11123
Q ss_pred ceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCc-cCCeEec----------------------
Q 015656 229 PRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA-RRPSLIS---------------------- 285 (403)
Q Consensus 229 p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~-~~p~~v~---------------------- 285 (403)
...+..+++.-|.+++.|..|.++++.+|.||.||-|..+|.|.-..... ..|.+-.
T Consensus 604 Sqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VC 683 (3738)
T KOG1428|consen 604 SQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVC 683 (3738)
T ss_pred HHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchh
Confidence 34567888888999999999999999999999999999999998543322 2222111
Q ss_pred -------------------CCcEEEeecCCCCCcCCC--------CC------------Ccc-------ccceeeeC--C
Q 015656 286 -------------------GGELYTWGSNENGCLGIG--------SI------------DVL-------HSPERVQG--P 317 (403)
Q Consensus 286 -------------------~g~v~~wG~n~~gqlG~g--------~~------------~~~-------~~p~~v~~--~ 317 (403)
.|.+..+|.++.+.+--| .. ... ..|.++.. .
T Consensus 684 a~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~ 763 (3738)
T KOG1428|consen 684 AQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQG 763 (3738)
T ss_pred hhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccC
Confidence 567777888777655322 00 001 12222221 1
Q ss_pred CCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEEEEecCCCce
Q 015656 318 FSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHT 396 (403)
Q Consensus 318 ~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t 396 (403)
..+-++++|+||..|+++|. |++||++|+ |.+||||.|+..+...|+.|..+++..++||++|.+||
T Consensus 764 ~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~------------~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT 831 (3738)
T KOG1428|consen 764 PHDVKVSSVSCGNFHTVLLASDRRVFTFGS------------NCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHT 831 (3738)
T ss_pred CcceeEEEEeccCceEEEEecCCcEEEecC------------CcccccCcCccccCCCcceEEcCCCCceEEEecCCCce
Confidence 13457999999999999999 999999999 79999999999999999999999999999999999999
Q ss_pred EEEEee
Q 015656 397 GALLEY 402 (403)
Q Consensus 397 ~~l~~~ 402 (403)
+++..+
T Consensus 832 ~l~~~D 837 (3738)
T KOG1428|consen 832 ILRAND 837 (3738)
T ss_pred EEEecC
Confidence 998754
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.38 E-value=4.1e-13 Score=89.18 Aligned_cols=50 Identities=42% Similarity=0.751 Sum_probs=47.2
Q ss_pred CCcEEEecCCCCCCCcccCCCCCCcccc-CCCCCCccccEEEecCCCceEEEEecCCCceEEE
Q 015656 338 EGKILTWGWGGSHGTFSEDGHSSGGQLG-HGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399 (403)
Q Consensus 338 ~g~v~~wG~~~~~~~~~~~g~N~~gqLG-~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l 399 (403)
||+||+||. |.+|||| .++......|++|+.+.+.++++|+||.+||++|
T Consensus 1 dG~vy~wG~------------n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGS------------NDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEE------------ETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEEC------------CCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 799999999 7999999 7888889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.35 E-value=1.4e-12 Score=86.66 Aligned_cols=50 Identities=32% Similarity=0.531 Sum_probs=47.2
Q ss_pred cceEEEEecCCCCccC-CCCCCCccceeeeCccCCCceEEEEeCCcceEEE
Q 015656 37 RRFAALWGNGDYGRLG-LGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (403)
Q Consensus 37 ~g~v~~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 86 (403)
||.||+||.|.+|||| .++......|+++..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 5889999999999999 7888889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.18 E-value=3.2e-11 Score=69.56 Aligned_cols=30 Identities=57% Similarity=0.958 Sum_probs=26.0
Q ss_pred eEEEecCCceeEEEecCCcEEEEEcCCCCC
Q 015656 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQ 154 (403)
Q Consensus 125 i~~i~~G~~~~~~l~~~G~v~~wG~n~~gq 154 (403)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=4.9e-11 Score=68.81 Aligned_cols=30 Identities=50% Similarity=0.820 Sum_probs=26.0
Q ss_pred eEEEEeCCcceEEEecCCcEEEEEcCCCCC
Q 015656 73 LKALACGGAHTLFLTETGCVYATGLNDFGQ 102 (403)
Q Consensus 73 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq 102 (403)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8e-12 Score=122.76 Aligned_cols=134 Identities=37% Similarity=0.573 Sum_probs=113.8
Q ss_pred ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeC-------CC
Q 015656 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTG-------GG 196 (403)
Q Consensus 124 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~-------~G 196 (403)
+|.+++||.+|+++++..|+++.||.|.+||++.+.... ... |..++.+.+.+...|++|.+|+++++. +|
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~-~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~ 92 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFP-DAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEG 92 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCC-CCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchhc
Confidence 899999999999999999999999999999999983332 233 888889999999999999999887766 99
Q ss_pred cEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEec-CCcEEEEeCCCcc
Q 015656 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDE-NGRVYIFGDRAVD 268 (403)
Q Consensus 197 ~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~-~G~v~~wG~n~~g 268 (403)
.++++|+...||+|+... .+...|..+..+-+..+..|+||..|+.++-. -|++|..|.+..|
T Consensus 93 ~~fs~Ga~~~~q~~h~~~---------~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLT---------ENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccccCCccccccccccc---------ccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 999999999999999543 55667777766667789999999999987754 5888888877765
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2e-11 Score=120.01 Aligned_cols=181 Identities=25% Similarity=0.378 Sum_probs=132.1
Q ss_pred ceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcC-ceEEEecCCceeEEEe
Q 015656 61 RPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAIT 139 (403)
Q Consensus 61 ~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~ 139 (403)
.|.++..+...+|.+++||.+|+++++..|++++||.|.+||+|.+....... |..++.+.. +..+|++|..|++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhh
Confidence 35555556667899999999999999999999999999999999984444444 877776655 8889999999887766
Q ss_pred c-------CCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEE-eCCCcEEEeeCCCCC--Cc
Q 015656 140 V-------DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV-TGGGKVLSWGAGGSG--RL 209 (403)
Q Consensus 140 ~-------~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~l-t~~G~v~~~G~n~~g--ql 209 (403)
. +|.++.+|....||+++..... ...|..+...-+..+..|+|+..|+.+. ..-|++|.+|.+..| ++
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~--~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i 160 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSLTEN--EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVI 160 (850)
T ss_pred hchhhcchhccccccCCccccccccccccc--ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCcee
Confidence 5 9999999999999999955544 3445555555566899999999888664 556899999998877 11
Q ss_pred CCCCCCcccccccccccccceeeccc---cCceEEEEEecCceeEEEecCCc
Q 015656 210 GHGQESSILGFLRSTSEYTPRLIKEL---EGVKVKIAAAGFLHSACIDENGR 258 (403)
Q Consensus 210 G~~~~~~~~~~~~~~~~~~p~~i~~~---~~~~i~~i~~G~~~~~~l~~~G~ 258 (403)
-.. ..+.+.... ....+..+.+|.+.+..+...++
T Consensus 161 ~s~--------------s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 161 VSL--------------SGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred ecc--------------chhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 100 011011100 01135567888888888876653
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.41 E-value=0.14 Score=56.04 Aligned_cols=117 Identities=11% Similarity=0.042 Sum_probs=70.5
Q ss_pred eeccccCceEEEEE-ecCceeEEEecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccc
Q 015656 231 LIKELEGVKVKIAA-AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLH 309 (403)
Q Consensus 231 ~i~~~~~~~i~~i~-~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~ 309 (403)
.|..+++..|..++ .+.++.++|++.|++-..=. ..
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k-------------------------------------------~g 732 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK-------------------------------------------PG 732 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCccccccC-------------------------------------------CC
Confidence 34455554555554 37789999999987664210 01
Q ss_pred cceeeeCCCCCCCEEEEecCCCeE-EEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEE
Q 015656 310 SPERVQGPFSESPVDQVSCGWKHT-AAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKAL 387 (403)
Q Consensus 310 ~p~~v~~~~~~~~i~~i~~G~~h~-~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~ 387 (403)
.|+.+..+--.-+|++|+.-..|. .|++ +|++|.-=.. .| ..+.+ ........++|.++.+..+.
T Consensus 733 ~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~-------~W---Q~~~~---~~~~~~~W~~v~lP~~~~v~ 799 (1774)
T PF11725_consen 733 RPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKE-------AW---QGNAE---GDQMAAKWQKVALPDEQPVK 799 (1774)
T ss_pred CCccCCCCCCCcchhheeeccccceeEecCCCceeecCHH-------Hh---hCccc---CCccccCceeccCCCCCchh
Confidence 144444322235789999988865 5788 9999975321 00 00111 11122556677777777888
Q ss_pred EEecCCCceEEEEeeC
Q 015656 388 QVSCGFNHTGALLEYV 403 (403)
Q Consensus 388 ~i~~G~~~t~~l~~~~ 403 (403)
.+....+|.+.+.-+|
T Consensus 800 ~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 800 SLRTNDDNHLSAQIED 815 (1774)
T ss_pred hhhcCCCCceEEEecC
Confidence 8888888888876443
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.21 E-value=6.3 Score=38.90 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=65.2
Q ss_pred eCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC-ceeEEEecCCcEE-EEEcCCCCCC
Q 015656 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITVDGELY-MWGKNSNGQL 155 (403)
Q Consensus 78 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~-~~~~~l~~~G~v~-~wG~n~~gql 155 (403)
.|.....+|.++|.+|.= -|.....+.. .-.++......+.+|++|. .-..+|+++|.|+ --|-....+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~G-raW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCG-RAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCC-ceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 344455677888888752 2222111111 1111111122689999999 7788999999985 4565555554
Q ss_pred CCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEE
Q 015656 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (403)
Q Consensus 156 g~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~ 200 (403)
|..=. .+.+|.... .++.|+.|....-+|+.+|.+|.
T Consensus 262 GdsWk---dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 262 GDSWK---DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred Cchhh---hccCccccc-----ceEEEEeccceEEEEecCCcEEE
Confidence 43211 234443322 28999999999999999999986
No 17
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.012 Score=61.28 Aligned_cols=133 Identities=19% Similarity=0.141 Sum_probs=90.1
Q ss_pred ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEe-ecCCceEEEEEeCCCceEEEeCCCcEEEee
Q 015656 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 124 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G 202 (403)
+++.|.+-..-.++|..+|++|.|-.....-|...-...+...-|..-. .+.+.+|+.+++..-..-++|++|+|.+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 8888988888899999999999998876654444323333333333322 346779999999998899999999999994
Q ss_pred CCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcc
Q 015656 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVD 268 (403)
Q Consensus 203 ~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~g 268 (403)
+ .+|.+...+ .....-+++ ..++..+++..|...|+++...+..+|-||--.+.
T Consensus 455 D----EcgagV~fk-------La~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 455 D----ECGAGVAFK-------LAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred h----hhhhhhhhh-------hhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 3 233332211 000111122 23445677888889999999999999999954433
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.78 E-value=26 Score=35.98 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=65.0
Q ss_pred cceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEE--ecCCcEEEEEcC
Q 015656 21 GSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLN 98 (403)
Q Consensus 21 ~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l--t~~g~vy~wG~n 98 (403)
..+++.+..--.+....|.-.++|+..-|||+.=+-.....-..-.. .-.+|..++-...-.++. .+||+|-+|-..
T Consensus 302 ~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 302 SLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 33444444333333466778899999999998754333221111110 012355555554433333 367888888543
Q ss_pred CCCCCCCCCCCCceecceEeecCcC--ceEEEecCCceeEEEecCCcEEEEEcCCC
Q 015656 99 DFGQLGISENIGYSLEPLRISGLKK--EVVQISTGYHHSSAITVDGELYMWGKNSN 152 (403)
Q Consensus 99 ~~gqlG~~~~~~~~~~p~~v~~~~~--~i~~i~~G~~~~~~l~~~G~v~~wG~n~~ 152 (403)
+.- . -+.+..-.. ..++.+.-.+..+...-||+|-+|--.+|
T Consensus 381 Sgf----------C--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 381 SGF----------C--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred Cce----------E--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 311 1 111111111 55666666677777778999999987665
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=0.05 Score=57.04 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCC---CceecceEeecCcCceEEEecCCceeEEEecCCcEEE
Q 015656 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENI---GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYM 146 (403)
Q Consensus 70 ~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~---~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~ 146 (403)
..+++.|.+-....++|.++|++|.|-+...--|-..-.. ...+.-..+-...++|+.+++..--.-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3568888887888899999999999998765433321111 1111122233334599999999988889999999999
Q ss_pred EEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCC
Q 015656 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (403)
Q Consensus 147 wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n 204 (403)
|=+ .+|.+....-.....+++ ...+..+++..|...|+++..+|..+|.||--
T Consensus 453 WlD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred HHh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 943 222222211111111122 23455677778888999999999999999953
No 20
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.71 E-value=2.2 Score=47.29 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=69.7
Q ss_pred EeecCCceEEEEE-eCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceee--ccccCceEEEEEecC
Q 015656 171 VECLSGIFTKQAA-LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLI--KELEGVKVKIAAAGF 247 (403)
Q Consensus 171 ~~~~~~~~i~~i~-~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i--~~~~~~~i~~i~~G~ 247 (403)
+..+++..|..+| .+.++.++|++.|++-..= ....|..+ +.+++ +|++|++=.
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~----------------------k~g~p~~l~~~gl~G-~ik~l~lD~ 753 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ----------------------KPGRPVPLSRPGLSG-EIKDLALDE 753 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc----------------------CCCCCccCCCCCCCc-chhheeecc
Confidence 4445555666666 4778999999999887641 11123333 35555 799999888
Q ss_pred cee-EEEecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEE
Q 015656 248 LHS-ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV 326 (403)
Q Consensus 248 ~~~-~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i 326 (403)
.|. +|++.+|++|+.=.-. | |-+..........+++..| ...+|..+
T Consensus 754 ~~nL~Alt~~G~Lf~~~k~~-------------------------W------Q~~~~~~~~~~~W~~v~lP-~~~~v~~l 801 (1774)
T PF11725_consen 754 KQNLYALTSTGELFRLPKEA-------------------------W------QGNAEGDQMAAKWQKVALP-DEQPVKSL 801 (1774)
T ss_pred ccceeEecCCCceeecCHHH-------------------------h------hCcccCCccccCceeccCC-CCCchhhh
Confidence 764 6888999999742211 1 1111111111233444444 56789999
Q ss_pred ecCCCeEEEEE
Q 015656 327 SCGWKHTAAIS 337 (403)
Q Consensus 327 ~~G~~h~~~lt 337 (403)
....+|.+.+.
T Consensus 802 ~~~~~~~l~~~ 812 (1774)
T PF11725_consen 802 RTNDDNHLSAQ 812 (1774)
T ss_pred hcCCCCceEEE
Confidence 99999999988
No 21
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=88.00 E-value=8.1 Score=39.25 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=56.2
Q ss_pred cccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCc-EEEEEc
Q 015656 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGL 97 (403)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~-vy~wG~ 97 (403)
++.++.|.-|.+++. ||.|-.|..+.- . .| ..+|..++....-++++|.-.+ |-.|=
T Consensus 135 kyvvSVGsQHDMIVn------v~dWr~N~~~as-------n----ki----ss~Vsav~fsEdgSYfvT~gnrHvk~wy- 192 (1080)
T KOG1408|consen 135 KYVVSVGSQHDMIVN------VNDWRVNSSGAS-------N----KI----SSVVSAVAFSEDGSYFVTSGNRHVKLWY- 192 (1080)
T ss_pred cEEEeeccccceEEE------hhhhhhcccccc-------c----cc----ceeEEEEEEccCCceeeeeeeeeEEEEE-
Confidence 345677777887776 888888865421 0 01 1235555555555555554332 22221
Q ss_pred CCCCCCCCCCCCCceecceEeec----Cc----CceEEEecCCc----eeEEEecCCcEEEEE
Q 015656 98 NDFGQLGISENIGYSLEPLRISG----LK----KEVVQISTGYH----HSSAITVDGELYMWG 148 (403)
Q Consensus 98 n~~gqlG~~~~~~~~~~p~~v~~----~~----~~i~~i~~G~~----~~~~l~~~G~v~~wG 148 (403)
- +.......|+++.+ +. ..+..|+||.. .+++|+..|.+--+-
T Consensus 193 l--------~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 193 L--------QIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred e--------eccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 1 01112223333332 11 27888999998 899999999887664
No 22
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.30 E-value=5.7 Score=34.83 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=44.0
Q ss_pred cCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeE-EeecCCceEEEEEeCCCc-eEEEeCCCcEE
Q 015656 122 KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAALGFEQ-SVAVTGGGKVL 199 (403)
Q Consensus 122 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~i~~G~~~-~~~lt~~G~v~ 199 (403)
+.+++.+.|-.++.++||.+|.+|+|--...-. -....+..+.-.+.. ........|+.+....+- -++..++|+.|
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~-~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKA-VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCee-ccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 358888999999999999999999996543211 111100000000000 000123456655555433 35555678888
Q ss_pred Eee
Q 015656 200 SWG 202 (403)
Q Consensus 200 ~~G 202 (403)
+|=
T Consensus 91 ~y~ 93 (219)
T PF07569_consen 91 SYS 93 (219)
T ss_pred Eec
Confidence 873
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.11 E-value=4.2 Score=35.70 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.8
Q ss_pred eEEEEEecCceeEEEecCCcEEEEeCC
Q 015656 239 KVKIAAAGFLHSACIDENGRVYIFGDR 265 (403)
Q Consensus 239 ~i~~i~~G~~~~~~l~~~G~v~~wG~n 265 (403)
+++.+.|-..+.+|||++|.+|+|=-.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 688899999999999999999999543
No 24
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=81.92 E-value=15 Score=36.47 Aligned_cols=70 Identities=27% Similarity=0.345 Sum_probs=51.3
Q ss_pred ceEEEEeCC-cceEEEecCCcEE-EEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEE
Q 015656 72 SLKALACGG-AHTLFLTETGCVY-ATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (403)
Q Consensus 72 ~i~~i~~G~-~~~~~lt~~g~vy-~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~w 147 (403)
.+.+|++|. ....+|+.+|.|| -.|-.++.+.|.. =.....|.... .++.|+.|..-.-+|+.+|.+|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gds--WkdI~tP~~a~----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDS--WKDIVTPRQAL----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCch--hhhccCccccc----ceEEEEeccceEEEEecCCcEEEE
Confidence 489999998 7778999999975 4566665555543 11333344322 499999999999999999999863
No 25
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.44 E-value=6.4 Score=22.97 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.0
Q ss_pred CceEEEecCC-ceeEEEecCCcEEEE
Q 015656 123 KEVVQISTGY-HHSSAITVDGELYMW 147 (403)
Q Consensus 123 ~~i~~i~~G~-~~~~~l~~~G~v~~w 147 (403)
..+++|++|. +..-+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5899999999 888899999999863
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=74.01 E-value=59 Score=28.19 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=48.4
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
.++++...++.++.|-..... ...... .....+..+..-.. +.++...+|.++.|-....
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------ 83 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----------LLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------ 83 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----------cEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------
Confidence 455555568888888654321 111111 11223434443333 4445556899999864421
Q ss_pred CCCCceecceEeecCcCceEEEecCCc-eeEEEec-CCcEEEEEcC
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITV-DGELYMWGKN 150 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~~-~~~~l~~-~G~v~~wG~n 150 (403)
.....+......|..+..... ..++... +|.|+.|-..
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 111222222235555554443 3334444 8889888653
No 27
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=73.42 E-value=8.3 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.4
Q ss_pred CceEEEEeCC-cceEEEecCCcEEEE
Q 015656 71 HSLKALACGG-AHTLFLTETGCVYAT 95 (403)
Q Consensus 71 ~~i~~i~~G~-~~~~~lt~~g~vy~w 95 (403)
..+++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3699999999 888899999999863
No 28
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.20 E-value=14 Score=33.36 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=70.9
Q ss_pred ccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC---CcceEEEecCCcEEEEEcC-CCCCCCCCCCC
Q 015656 34 TLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLN-DFGQLGISENI 109 (403)
Q Consensus 34 ~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~vy~wG~n-~~gqlG~~~~~ 109 (403)
...||.||.-+.. .|.+|+-+-. .-+++.+..| .-|.+++..||..|.+-.. ..+.++.. +-
T Consensus 69 papdG~VWft~qg-~gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk-t~ 134 (353)
T COG4257 69 PAPDGAVWFTAQG-TGAIGHLDPA------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPK-TL 134 (353)
T ss_pred cCCCCceEEecCc-cccceecCCC------------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCc-cc
Confidence 3378888865544 3556653211 1134444433 3367778888888877433 11222221 11
Q ss_pred CceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcC-CCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCc
Q 015656 110 GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN-SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ 188 (403)
Q Consensus 110 ~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n-~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~ 188 (403)
.....|.. .+.+-+.-.+.+++.+|.||..|.+ .+|.|.......+..+.| . -+.-.
T Consensus 135 evt~f~lp--------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------q--------G~gpy 192 (353)
T COG4257 135 EVTRFPLP--------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------Q--------GGGPY 192 (353)
T ss_pred ceEEeecc--------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------C--------CCCCc
Confidence 11111111 3344455678889999999999874 345444333322222222 1 13345
Q ss_pred eEEEeCCCcEEEe
Q 015656 189 SVAVTGGGKVLSW 201 (403)
Q Consensus 189 ~~~lt~~G~v~~~ 201 (403)
-++.|.||+||.-
T Consensus 193 Gi~atpdGsvwya 205 (353)
T COG4257 193 GICATPDGSVWYA 205 (353)
T ss_pred ceEECCCCcEEEE
Confidence 6899999999975
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=70.66 E-value=70 Score=27.67 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred ceEEEEeCC-cceEEEec-CCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc--eeEEEecCCcEEEE
Q 015656 72 SLKALACGG-AHTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMW 147 (403)
Q Consensus 72 ~i~~i~~G~-~~~~~lt~-~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~--~~~~l~~~G~v~~w 147 (403)
.|..++... ...++... +|.|+.|-..... ....+......|..+..-.+ ..++...+|.|..|
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence 466666554 23333334 8888888543110 00111111224444444333 45555558888888
Q ss_pred EcC
Q 015656 148 GKN 150 (403)
Q Consensus 148 G~n 150 (403)
-..
T Consensus 205 d~~ 207 (289)
T cd00200 205 DLS 207 (289)
T ss_pred ECC
Confidence 543
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=68.87 E-value=62 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.7
Q ss_pred cCCCeEEEEECCcEEEecC
Q 015656 328 CGWKHTAAISEGKILTWGW 346 (403)
Q Consensus 328 ~G~~h~~~lt~g~v~~wG~ 346 (403)
+-..|+.++..+++|.+|-
T Consensus 292 aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 292 ARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred cccceeEEEECCEEEEecC
Confidence 3456777777999999984
No 31
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.44 E-value=1.6e+02 Score=31.20 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred eEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEE
Q 015656 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYAT 95 (403)
Q Consensus 39 ~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 95 (403)
.|+++|++..=+. .....+...|..+.. .+..|..|++-.+|.+.-++++.|-.+
T Consensus 27 fi~tcgsdg~ir~-~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 27 FICTCGSDGDIRK-WKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred EEEEecCCCceEE-eecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEe
Confidence 6777776642211 111122255666554 456799999999998888888876443
No 32
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=64.63 E-value=1.4e+02 Score=33.01 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=40.8
Q ss_pred CceEEEEeCCcc-eEEEe--cCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEE-ecCCceeEEE-ecCCcEE
Q 015656 71 HSLKALACGGAH-TLFLT--ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI-STGYHHSSAI-TVDGELY 145 (403)
Q Consensus 71 ~~i~~i~~G~~~-~~~lt--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i-~~G~~~~~~l-~~~G~v~ 145 (403)
..+.+++....| +++++ +||.|-+|-.-. -.|.+.. ....-+ ......++..+ .|++.+.+|+ ++||.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s--~rS~lt-ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS--ARSELT-YSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce--eeeeEE-EeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 346688888888 77765 789999996432 2222111 111111 11112244443 2444443333 7889988
Q ss_pred EEEcCCC
Q 015656 146 MWGKNSN 152 (403)
Q Consensus 146 ~wG~n~~ 152 (403)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8775543
No 33
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.74 E-value=1.2e+02 Score=27.72 Aligned_cols=138 Identities=21% Similarity=0.264 Sum_probs=73.5
Q ss_pred CCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC---ceeEEEecCCcEEEEEcCC-CCC
Q 015656 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNS-NGQ 154 (403)
Q Consensus 79 G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~---~~~~~l~~~G~v~~wG~n~-~gq 154 (403)
+.-|-++...||.||.-+.. .+.+|+- .| ...+++.+..|. -|.+++..||..|.+-... .+.
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhL-------dP-----~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R 128 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHL-------DP-----ATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGR 128 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceec-------CC-----CCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEE
Confidence 45677888999999975543 2333332 11 112344443332 4778888888888875432 222
Q ss_pred CCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCC-CCCCcCCCCCCcccccccccccccceeec
Q 015656 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG-GSGRLGHGQESSILGFLRSTSEYTPRLIK 233 (403)
Q Consensus 155 lg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n-~~gqlG~~~~~~~~~~~~~~~~~~p~~i~ 233 (403)
++...-..+..+.| .+.+-++-.+.+++..|.||.-|.+ .+|+|-.... . +
T Consensus 129 ~dpkt~evt~f~lp-----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~---------~-------i- 180 (353)
T COG4257 129 LDPKTLEVTRFPLP-----------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN---------V-------I- 180 (353)
T ss_pred ecCcccceEEeecc-----------cccCCCcccceeeCCCccEEEeeccccceecCcccC---------c-------e-
Confidence 22211111111122 2233345567899999999998874 2333322111 0 0
Q ss_pred cccCceEEEE-EecCceeEEEecCCcEEEE
Q 015656 234 ELEGVKVKIA-AAGFLHSACIDENGRVYIF 262 (403)
Q Consensus 234 ~~~~~~i~~i-~~G~~~~~~l~~~G~v~~w 262 (403)
+|-.. .-+.-.-++.|.+|+||.-
T Consensus 181 -----~vfpaPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 181 -----SVFPAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred -----eeeccCCCCCCcceEECCCCcEEEE
Confidence 01111 1234467899999999976
No 34
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.55 E-value=1.3e+02 Score=33.27 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=35.2
Q ss_pred EEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeC
Q 015656 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 136 ~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~ 203 (403)
+.+|.|+++|.|-.++.+++-.-+......-.-..+..-.+.-+-. -.|.++|...=+|+..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEE
Confidence 6789999999999887666544322221110000111111111111 247888887778888874
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=61.44 E-value=1.2e+02 Score=27.08 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred eEEEEEeCCC--ceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCc--eeEEE
Q 015656 178 FTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACI 253 (403)
Q Consensus 178 ~i~~i~~G~~--~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~~~~l 253 (403)
+|..|..-.+ +.+.-+.+|.|+.|--... . ...+..|... ..|.+++...+ -.++.
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~------~---------c~~~liPe~~-----~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGEN------S---------CTHELIPEDD-----TSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCC------c---------cccccCCCCC-----cceeeEEEcCCCcEEEEe
Confidence 4555555444 4566678999999953211 1 1223333322 24666666544 45677
Q ss_pred ecCCcEEEEeC
Q 015656 254 DENGRVYIFGD 264 (403)
Q Consensus 254 ~~~G~v~~wG~ 264 (403)
++.|++|+|-.
T Consensus 186 nnkG~cyvW~l 196 (311)
T KOG0315|consen 186 NNKGNCYVWRL 196 (311)
T ss_pred cCCccEEEEEc
Confidence 88999999964
No 36
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=58.52 E-value=27 Score=19.28 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=20.1
Q ss_pred CceEEEEeCCcceEEEecCCcEEE
Q 015656 71 HSLKALACGGAHTLFLTETGCVYA 94 (403)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~g~vy~ 94 (403)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 569999999999999998886543
No 37
>PHA02713 hypothetical protein; Provisional
Probab=56.98 E-value=2e+02 Score=29.29 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=13.1
Q ss_pred CCcceEEEecCCcEEEEEcC
Q 015656 79 GGAHTLFLTETGCVYATGLN 98 (403)
Q Consensus 79 G~~~~~~lt~~g~vy~wG~n 98 (403)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33333445568999999953
No 38
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=52.31 E-value=17 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.3
Q ss_pred cceEEEecCCcEEEEEcC
Q 015656 81 AHTLFLTETGCVYATGLN 98 (403)
Q Consensus 81 ~~~~~lt~~g~vy~wG~n 98 (403)
.+.++++.+|.+|+.|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999964
No 39
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=52.24 E-value=2.3e+02 Score=27.55 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=49.0
Q ss_pred eEEEEeCCcce--EEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEe--cCCcEEEEE
Q 015656 73 LKALACGGAHT--LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAIT--VDGELYMWG 148 (403)
Q Consensus 73 i~~i~~G~~~~--~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~--~~G~v~~wG 148 (403)
|..+++...-. ++=+..|++|.|=-++---|-.- -. --..|..+....+-+++++ +||.|.+|=
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----------~a-HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----------SA-HYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----------Hh-hccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 55555543333 33357899999965432111100 00 0115666666666666665 688899985
Q ss_pred cCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC
Q 015656 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (403)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~ 187 (403)
--.- -+..+...+.|.....--...|+++.+|..
T Consensus 152 l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 152 LTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEee-----cccccCCCccceeeeccCcceeEEEEecCC
Confidence 3211 011111133443333223456888887765
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.75 E-value=3.1e+02 Score=28.74 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=35.9
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEe--CCcceEEEecCCcEEEEEcC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATGLN 98 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG~n 98 (403)
...++++-++|-.+..||-...= ...|..+..-.+ .|+.--. -..+.+.+.+||.+++|..+
T Consensus 156 DSr~l~~gsrD~s~rl~~v~~~k---------~~~~~~l~gHkd-~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 156 DSRLLVTGSRDLSARLFGVDGNK---------NLFTYALNGHKD-YVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred CCceEEeccccceEEEEEecccc---------ccceEeccCCCc-ceEEEEeccCcceEEEEecCceEEEEEec
Confidence 34566666677777777755311 122333322222 2443332 34556778999999999977
No 41
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=51.31 E-value=2.4e+02 Score=27.45 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEe--cCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt--~~g~vy~wG~n~~gqlG~~ 106 (403)
.|++..+.++.+|+|=.+..-.|-.- -. .-..|..+....+-+.+++ +||.|.+|=--+--+ .
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~----------~a--HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~---a 158 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVL----------SA--HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS---A 158 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHH----------Hh--hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc---c
Confidence 44444447788999987752221100 00 1123666665555555554 689999996322111 0
Q ss_pred CCCCceecceEeec-CcCceEEEecCCce
Q 015656 107 ENIGYSLEPLRISG-LKKEVVQISTGYHH 134 (403)
Q Consensus 107 ~~~~~~~~p~~v~~-~~~~i~~i~~G~~~ 134 (403)
.......|..+.. -...|+++.+|..-
T Consensus 159 -~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 159 -DNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred -ccCCCccceeeeccCcceeEEEEecCCC
Confidence 1111233333321 11278888777653
No 42
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=50.71 E-value=2.5e+02 Score=27.43 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCC
Q 015656 133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~ 212 (403)
.+.++...+|+||.|--+.. .-+.. .++=-+=...+++++-+|+.++.|+.. |..-.-
T Consensus 357 k~l~~~~~~GeV~v~nl~~~----------------~~~~r-----f~D~G~v~gts~~~S~ng~ylA~GS~~-GiVNIY 414 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQN----------------SCLHR-----FVDDGSVHGTSLCISLNGSYLATGSDS-GIVNIY 414 (514)
T ss_pred cEEEEEcCCceEEEEecCCc----------------ceEEE-----EeecCccceeeeeecCCCceEEeccCc-ceEEEe
Confidence 56666667999999965422 11111 111111133467788888888888752 221111
Q ss_pred CCCcccccccccccccceeeccccC
Q 015656 213 QESSILGFLRSTSEYTPRLIKELEG 237 (403)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (403)
+.. .......|+++..+.+
T Consensus 415 d~~------s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 415 DGN------SCFASTNPKPIKTVDN 433 (514)
T ss_pred ccc------hhhccCCCCchhhhhh
Confidence 110 1234556777766554
No 43
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.86 E-value=4.2e+02 Score=29.73 Aligned_cols=166 Identities=15% Similarity=0.037 Sum_probs=75.7
Q ss_pred ccceEEEEecCCCCccCCCCCCCc--cceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCcee
Q 015656 36 QRRFAALWGNGDYGRLGLGSLESR--WRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (403)
Q Consensus 36 ~~g~v~~~G~n~~gqlG~~~~~~~--~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~ 113 (403)
-|..+|.|=.+..+++-.-+..+. ..-..+..-++.-+-. -.|.++|..--+|+..|-...-..+.. ....
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~---~~f~ 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGEL---SIFN 169 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcc---cccc
Confidence 677799999998777654332221 1111111112222222 258899999999999984322111100 0000
Q ss_pred cceEeecCcCceEEEecCCceeEEEe-cCCcEEE----EEcCCCCCCCCCCCC---CcccccCeEEee--cCCceEEEEE
Q 015656 114 EPLRISGLKKEVVQISTGYHHSSAIT-VDGELYM----WGKNSNGQLGLGKKA---AKVIPIPTKVEC--LSGIFTKQAA 183 (403)
Q Consensus 114 ~p~~v~~~~~~i~~i~~G~~~~~~l~-~~G~v~~----wG~n~~gqlg~~~~~---~~~~~~p~~~~~--~~~~~i~~i~ 183 (403)
.-..+..-+-.|..|++..+-=++++ +||.||- ..++.+++-...-.. .-..-.|..+.. .+..+|++|+
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 11222211223444443333333333 3333321 122223321111000 001123332222 2355899999
Q ss_pred eCCCce--EEEeCCCcEEEeeCCCCCC
Q 015656 184 LGFEQS--VAVTGGGKVLSWGAGGSGR 208 (403)
Q Consensus 184 ~G~~~~--~~lt~~G~v~~~G~n~~gq 208 (403)
...... .++++.|.|-+|=-...|+
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCCCc
Confidence 987765 5677889877775444443
No 44
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=48.90 E-value=3.6e+02 Score=28.77 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=60.1
Q ss_pred ccceeeccccCceEEEEEecCceeEEEecCCcE--EEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCC
Q 015656 227 YTPRLIKELEGVKVKIAAAGFLHSACIDENGRV--YIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGS 304 (403)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v--~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~ 304 (403)
..|..|.. .+..|..|++-..|.+.-++++.| |-++.....-+-.....+...-....+|+..+.|+.+...--...
T Consensus 47 e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~ 125 (933)
T KOG1274|consen 47 EEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL 125 (933)
T ss_pred cCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec
Confidence 45666653 455789999998888888888854 554544333221111111111111127778888777765322221
Q ss_pred CCccccceeeeCCCCCCCEEEEecCC--CeEEEEE-CCcEEEecC
Q 015656 305 IDVLHSPERVQGPFSESPVDQVSCGW--KHTAAIS-EGKILTWGW 346 (403)
Q Consensus 305 ~~~~~~p~~v~~~~~~~~i~~i~~G~--~h~~~lt-~g~v~~wG~ 346 (403)
.+.....+... ....|.++.--. ...++.+ ||+|++|-.
T Consensus 126 ~D~s~~~~lrg---h~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 126 DDSSQEKVLRG---HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred cccchheeecc---cCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 11111111111 123455555433 4445555 999999976
No 45
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=48.39 E-value=3.7e+02 Score=28.78 Aligned_cols=166 Identities=14% Similarity=0.005 Sum_probs=77.5
Q ss_pred ceEEEE--eCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC-----CceeEEEecCCcE
Q 015656 72 SLKALA--CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGEL 144 (403)
Q Consensus 72 ~i~~i~--~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G-----~~~~~~l~~~G~v 144 (403)
.+..+. ....+.+++|+.|++|..-...--..+..........-..+. ..++|+.+.+- ....+++|++|.+
T Consensus 536 ~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 536 FIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQ-PDERITAILSVKEFDDGLYLFFATKNGVV 614 (800)
T ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCC-CCCeEEEEEEeccCCCCCEEEEEeCCCEE
Confidence 444433 334456888999999998433222211110111100001111 22366666552 2356788888877
Q ss_pred EEEEcCCCCCCCCCCCCCcccccCeE-EeecCCceEEEEEe--CCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccc
Q 015656 145 YMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (403)
Q Consensus 145 ~~wG~n~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~ 221 (403)
--.-.+.+-.... .... +..-++..++.+.. ...+.+++|++|++|.+-...--..+....
T Consensus 615 KRi~l~~~~~~~r---------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~------- 678 (800)
T TIGR01063 615 KKTSLTEFSNIRS---------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR------- 678 (800)
T ss_pred EEEEhHHhhhhcc---------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-------
Confidence 6543322210000 0000 00011223443332 345688999999999986654333332211
Q ss_pred ccccccccee-eccccCceEEEEEec--CceeEEEecCCcEEE
Q 015656 222 RSTSEYTPRL-IKELEGVKVKIAAAG--FLHSACIDENGRVYI 261 (403)
Q Consensus 222 ~~~~~~~p~~-i~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~ 261 (403)
... +..-++.+|+.+..- ..+.+++|++|.+.-
T Consensus 679 -------Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr 714 (800)
T TIGR01063 679 -------GVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKR 714 (800)
T ss_pred -------CeecccCCCCCEEEEEEEeccccEEEEEecCCcEEE
Confidence 111 111233456655442 235677777775553
No 46
>PHA03098 kelch-like protein; Provisional
Probab=44.45 E-value=3.4e+02 Score=27.20 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=11.4
Q ss_pred ceeEEEecCCcEEEEEc
Q 015656 133 HHSSAITVDGELYMWGK 149 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~ 149 (403)
.|+++ ..++++|.+|.
T Consensus 382 ~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVV-NVNNLIYVIGG 397 (534)
T ss_pred cceEE-EECCEEEEECC
Confidence 45554 45789999986
No 47
>PRK05560 DNA gyrase subunit A; Validated
Probab=42.20 E-value=4.7e+02 Score=28.11 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC-----ceeEEEecCCcEEEEE
Q 015656 74 KALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWG 148 (403)
Q Consensus 74 ~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~-----~~~~~l~~~G~v~~wG 148 (403)
...+....+.+++|+.|++|..=...--..+..........-..+. ..++|+.+.+-. ...++++++|.+--.-
T Consensus 542 ~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 542 LFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLE-PGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred EEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCC-CCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Q ss_pred cCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccccccccc
Q 015656 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (403)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~ 228 (403)
...+ ....+.-.....+..-....-...+....+.+++|++|++|.+-...--..+.... -
T Consensus 621 l~~~------~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-------------G 681 (805)
T PRK05560 621 LSEF------SNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-------------G 681 (805)
T ss_pred hHHh------hhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-------------C
Q ss_pred ceeeccccCceEEEEEecCc---eeEEEecCCcE
Q 015656 229 PRLIKELEGVKVKIAAAGFL---HSACIDENGRV 259 (403)
Q Consensus 229 p~~i~~~~~~~i~~i~~G~~---~~~~l~~~G~v 259 (403)
-..+..-++.+|+.+.+-.. +.+++|+.|.+
T Consensus 682 v~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~i 715 (805)
T PRK05560 682 VRGIKLREGDEVVSMDVVREDSQEILTVTENGYG 715 (805)
T ss_pred cccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeE
No 48
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=41.25 E-value=65 Score=23.10 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=29.1
Q ss_pred eecceEeecCcCceEEEecC-CceeEEEecCCcEEEEEcCCCCC
Q 015656 112 SLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQ 154 (403)
Q Consensus 112 ~~~p~~v~~~~~~i~~i~~G-~~~~~~l~~~G~v~~wG~n~~gq 154 (403)
...|..+. +...=..|+|. ....++|++||.+|+-+--+.|+
T Consensus 6 ~t~Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 6 VTHPASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp EE--SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred Eccccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 34566666 45577889999 88999999999999988654554
No 49
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.95 E-value=5.2e+02 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=23.6
Q ss_pred CCceEEEEeCCcc--eEEEecCCcEEEEEcC
Q 015656 70 KHSLKALACGGAH--TLFLTETGCVYATGLN 98 (403)
Q Consensus 70 ~~~i~~i~~G~~~--~~~lt~~g~vy~wG~n 98 (403)
...|.+|+....+ .++++.+|++..|-..
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 3569999999888 7899999988777643
No 50
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=40.60 E-value=2.7e+02 Score=28.40 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCC-CEEEEecCCCeEEEEE-CCcEEEecC
Q 015656 286 GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES-PVDQVSCGWKHTAAIS-EGKILTWGW 346 (403)
Q Consensus 286 ~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~-~i~~i~~G~~h~~~lt-~g~v~~wG~ 346 (403)
++.+|+.|-... +... .......|. ...+ .+..+.....+..+.. ++++|+-|-
T Consensus 475 ~~~iYvvGG~~~-~~~~-~~VE~ydp~-----~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSAL-SSVERYDPE-----TNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCcc-ceEEEEcCC-----CCceeEcccCccccccccEEEECCEEEEEec
Confidence 999999986553 1100 011111111 1111 2223445666666666 999999983
No 51
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=40.44 E-value=2.9e+02 Score=25.19 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEE--ecCCcEEEEEcCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLG 104 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l--t~~g~vy~wG~n~~gqlG 104 (403)
...+++..++|..+++|-.+.. ....-.|.+...-....|.++++...-.+|| ..|+.+..|-....
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---- 95 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---- 95 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----
Confidence 4567777789999999998875 1222233332222345677777766655555 56889999964321
Q ss_pred CCCCCCceecceEeecCcCceEEEecCCceeEEEe--cCCcEEEE
Q 015656 105 ISENIGYSLEPLRISGLKKEVVQISTGYHHSSAIT--VDGELYMW 147 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~--~~G~v~~w 147 (403)
....++.+-...+..++...+..-+++ .|..+-.|
T Consensus 96 --------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 96 --------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred --------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 122333333445666665555555554 34444444
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=40.11 E-value=5.8e+02 Score=28.60 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=64.7
Q ss_pred cceeeeee-eEEeeccccceEEEEecCCCCccCCC-CCCCccceeeeCccCCCceEEEE-eCCcceEEE-ecCCcEEEEE
Q 015656 21 GSKLGICK-RWISSTLQRRFAALWGNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALA-CGGAHTLFL-TETGCVYATG 96 (403)
Q Consensus 21 ~~~~g~~~-~~~~~~~~~g~v~~~G~n~~gqlG~~-~~~~~~~p~~v~~~~~~~i~~i~-~G~~~~~~l-t~~g~vy~wG 96 (403)
.++....| .+|++.+.||.|-+|-.-. -.|.+ ...++ -+. .+.+.++..+. |+..+.+|+ ++||.|-+.+
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~--lty--s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSE--LTY--SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeee--EEE--eccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 44445567 9999999999999998766 44442 22222 111 12455676664 566665554 7889988887
Q ss_pred cCCCCCCCCCCCCCceecceEeecCc--CceEEEecCCc-----eeEEEecCCcEEEEEc
Q 015656 97 LNDFGQLGISENIGYSLEPLRISGLK--KEVVQISTGYH-----HSSAITVDGELYMWGK 149 (403)
Q Consensus 97 ~n~~gqlG~~~~~~~~~~p~~v~~~~--~~i~~i~~G~~-----~~~~l~~~G~v~~wG~ 149 (403)
-+.+.+ ......-..++.+. ..++++-+-.. -.++.|..+.+-.|+-
T Consensus 1127 id~~~~------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1127 IDHYNV------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred cccccc------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 554311 11111111111111 14444433221 2456778888888874
No 53
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=38.34 E-value=3.8e+02 Score=25.99 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=39.2
Q ss_pred CceEEEEeC-CcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEee--cC-cCceEEEecCCceeEEEecCCcEEE
Q 015656 71 HSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GL-KKEVVQISTGYHHSSAITVDGELYM 146 (403)
Q Consensus 71 ~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~-~~~i~~i~~G~~~~~~l~~~G~v~~ 146 (403)
.+|+.+.-- ...-++|+++|.++..- -+|.. ....+..+. .. ..++-.+..+..-.++|+.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 467666643 44667889999988863 33332 111111111 11 1134444556566888999999998
Q ss_pred E
Q 015656 147 W 147 (403)
Q Consensus 147 w 147 (403)
-
T Consensus 152 v 152 (410)
T PF04841_consen 152 V 152 (410)
T ss_pred E
Confidence 7
No 54
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=38.19 E-value=1.6e+02 Score=26.25 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=55.2
Q ss_pred EecCCcEEEEEcCCCCCCCCCCCCCceecceEeec---CcCceEEEecCC-ceeEEEecCCcEEEEEcCCCCCCCCCCCC
Q 015656 86 LTETGCVYATGLNDFGQLGISENIGYSLEPLRISG---LKKEVVQISTGY-HHSSAITVDGELYMWGKNSNGQLGLGKKA 161 (403)
Q Consensus 86 lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~---~~~~i~~i~~G~-~~~~~l~~~G~v~~wG~n~~gqlg~~~~~ 161 (403)
+..||++...|-+..|. .......|..... ..+...+++.++ .-++.+..||+|++.|-...--...-+..
T Consensus 74 ~L~dG~ll~tGG~~~G~-----~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGN-----KAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CCCCCCEEEeCCCCccc-----cceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 45789999888554422 2222333433110 111222355554 66888889999999986541111100000
Q ss_pred CcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCC
Q 015656 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205 (403)
Q Consensus 162 ~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~ 205 (403)
. ....+..+..+....- ......+=.+.|..+|+||.|+.+.
T Consensus 149 ~-~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 149 G-PGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred c-CCCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcCC
Confidence 0 0111122222221100 1122334467888899999998753
No 55
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=38.03 E-value=1.4e+02 Score=28.60 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=43.0
Q ss_pred eEEEEeCCcc---eEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEE
Q 015656 73 LKALACGGAH---TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (403)
Q Consensus 73 i~~i~~G~~~---~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG 148 (403)
+..+.++.++ .+++..+|++..|-.+..- .++.....+.+|..-....+|++..|+||++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt---------------~l~~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK---------------ALKQMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCeee---------------EccCCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4445667775 6777888999888633221 12223347888988888899999999999886
No 56
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=37.98 E-value=95 Score=28.83 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=38.5
Q ss_pred EEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCce--EEEeCCCcEEEee
Q 015656 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQS--VAVTGGGKVLSWG 202 (403)
Q Consensus 136 ~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~--~~lt~~G~v~~~G 202 (403)
++..+.|+||.|--... .....++......+..|.+.+...+-+ +++.++|.||.|-
T Consensus 323 a~gnq~g~v~vwdL~~~----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCCC----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 34567899999974322 112455556666777888888776654 5567899999984
No 57
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=37.08 E-value=3.1e+02 Score=24.62 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=54.6
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcc--eEEEecCCcEEEEEcCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~--~~~lt~~g~vy~wG~n~~gqlG 104 (403)
.-....+.++||.+-.|-.-. +.. ++.... ...|..|.--.+. -+.-+.+|.|++|--...
T Consensus 94 dgrWMyTgseDgt~kIWdlR~---~~~--------qR~~~~--~spVn~vvlhpnQteLis~dqsg~irvWDl~~~---- 156 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRS---LSC--------QRNYQH--NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN---- 156 (311)
T ss_pred cCeEEEecCCCceEEEEeccC---ccc--------chhccC--CCCcceEEecCCcceEEeecCCCcEEEEEccCC----
Confidence 345556666777777777554 111 111111 1235555544444 345578899999963221
Q ss_pred CCCCCCceecceEeecCcCceEEEecCCce--eEEEecCCcEEEEEc
Q 015656 105 ISENIGYSLEPLRISGLKKEVVQISTGYHH--SSAITVDGELYMWGK 149 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~--~~~l~~~G~v~~wG~ 149 (403)
...-.+++.....|.+++...+- .++++..|+.|+|-.
T Consensus 157 -------~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 157 -------SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred -------ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 11112222222367777766654 456788899999975
No 58
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=36.24 E-value=3.2e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=22.4
Q ss_pred CCCceEEEEeCCcceEEEecCCcEEEEEcCCCCC
Q 015656 69 EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102 (403)
Q Consensus 69 ~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq 102 (403)
.+..|-.++.-+.|-+ .--||+||.|=+|+.-.
T Consensus 61 hdgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEE 93 (325)
T ss_pred cCCCeeeeeeehhhee-eccCceEEEeeehhhhh
Confidence 3445667776655543 34579999999988755
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.62 E-value=4e+02 Score=25.13 Aligned_cols=17 Identities=12% Similarity=-0.197 Sum_probs=12.8
Q ss_pred CceEEEeCCCcEEEeeC
Q 015656 187 EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 187 ~~~~~lt~~G~v~~~G~ 203 (403)
++.++.+.+|.||++-.
T Consensus 321 ~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 46677788899998843
No 60
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=34.60 E-value=45 Score=20.94 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=12.1
Q ss_pred CeEEEEECCcEEEecC
Q 015656 331 KHTAAISEGKILTWGW 346 (403)
Q Consensus 331 ~h~~~lt~g~v~~wG~ 346 (403)
.|++++-++++|++|=
T Consensus 4 ~hs~~~~~~kiyv~GG 19 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGG 19 (49)
T ss_pred ceEEEEECCEEEEECC
Confidence 4566655999999983
No 61
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=33.76 E-value=3.9e+02 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCceEEEeCCCcEEEee
Q 015656 176 GIFTKQAALGFEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 176 ~~~i~~i~~G~~~~~~lt~~G~v~~~G 202 (403)
..+|+.|..-.++.+++.++ ++|.|-
T Consensus 94 ~~~I~~V~l~r~riVvvl~~-~I~Vyt 119 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVLEN-KIYVYT 119 (346)
T ss_pred ccceeeEEEcCCeEEEEecC-eEEEEE
Confidence 34699999999999999975 777664
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.55 E-value=4.5e+02 Score=25.43 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=38.4
Q ss_pred cCceEEEecCCceeEEEe--cCCcEEEEEcCCCCCCCCCCCCCcccccCeEEe--ecCCceEEEEEeCCCceEEE--eCC
Q 015656 122 KKEVVQISTGYHHSSAIT--VDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGFEQSVAV--TGG 195 (403)
Q Consensus 122 ~~~i~~i~~G~~~~~~l~--~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~~~~i~~i~~G~~~~~~l--t~~ 195 (403)
..+|..++...+.-++|. .+.++..|---.. ..+.+.. .....-|.....|.+..++. +||
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 347777766554444443 4677888864211 1111111 01123466666677766666 589
Q ss_pred CcEEEeeC
Q 015656 196 GKVLSWGA 203 (403)
Q Consensus 196 G~v~~~G~ 203 (403)
++||.|-.
T Consensus 462 ~kvyIWhr 469 (519)
T KOG0293|consen 462 SKVYIWHR 469 (519)
T ss_pred ceEEEEEc
Confidence 99999954
No 63
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=33.46 E-value=44 Score=20.86 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=11.3
Q ss_pred CceEEEeCCCcEEEeeC
Q 015656 187 EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 187 ~~~~~lt~~G~v~~~G~ 203 (403)
.|++++..+++||.+|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 68888887789999984
No 64
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=31.35 E-value=3.9e+02 Score=23.96 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=37.6
Q ss_pred eeEEeeccccceEEEEecCCCCc-cCCCCCCCccceeeeCccCCCceEEEEe--CCcceEEEecCCcEEEEE
Q 015656 28 KRWISSTLQRRFAALWGNGDYGR-LGLGSLESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATG 96 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gq-lG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG 96 (403)
|.-++....+|.||.|=.|+.-. ++....-.+..|.++...+-..|-.+.. -.+..++---|+.+|.|-
T Consensus 71 ~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 71 HDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred ehhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 33334445779999999998555 5555555566777775443323333222 222223333455566663
No 65
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.95 E-value=95 Score=16.90 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.2
Q ss_pred eeEEEecCCcEEEEEcC
Q 015656 134 HSSAITVDGELYMWGKN 150 (403)
Q Consensus 134 ~~~~l~~~G~v~~wG~n 150 (403)
+.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56788889999987644
No 66
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=30.21 E-value=4.5e+02 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=15.3
Q ss_pred EEecCceeEEEecCCcEEEEeC
Q 015656 243 AAAGFLHSACIDENGRVYIFGD 264 (403)
Q Consensus 243 i~~G~~~~~~l~~~G~v~~wG~ 264 (403)
......+.-+..-++++|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4445566666777888998875
No 67
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=30.15 E-value=4.8e+02 Score=25.36 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=55.4
Q ss_pred ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC------CceEEEeCCCcEEEeeCCCC
Q 015656 133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF------EQSVAVTGGGKVLSWGAGGS 206 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~------~~~~~lt~~G~v~~~G~n~~ 206 (403)
.|-+++-..|.+|.+|--. ........+...-.-+..+...+..++..+. .|-+++-.. +++.||--..
T Consensus 124 shq~va~~s~~l~~fGGEf----aSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~-~lilFGGFhd 198 (521)
T KOG1230|consen 124 SHQAVAVPSNILWLFGGEF----ASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKR-QLILFGGFHD 198 (521)
T ss_pred cceeEEeccCeEEEecccc----CCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeee-eEEEEcceec
Confidence 4666666677999998421 1111111111111122223334556665543 366666643 6777763111
Q ss_pred CCcCCCCCCcccccccccccccceeeccccCceEEEEEec-------CceeEEEecCCcEEEEeCC
Q 015656 207 GRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-------FLHSACIDENGRVYIFGDR 265 (403)
Q Consensus 207 gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G-------~~~~~~l~~~G~v~~wG~n 265 (403)
- .+ ....+.-.-+..++..+..++..+ .-|.++++.+|.+|+||-.
T Consensus 199 ~-nr------------~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 199 S-NR------------DYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred C-CC------------ceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence 0 00 011122222223333334444332 3578888989999999853
No 68
>PLN02153 epithiospecifier protein
Probab=29.69 E-value=4.7e+02 Score=24.38 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=11.7
Q ss_pred ceEEEeCCCcEEEeeCC
Q 015656 188 QSVAVTGGGKVLSWGAG 204 (403)
Q Consensus 188 ~~~~lt~~G~v~~~G~n 204 (403)
+++.+..++++|.||--
T Consensus 307 ~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 307 TTATVYGKNGLLMHGGK 323 (341)
T ss_pred cccccCCcceEEEEcCc
Confidence 34555666789999853
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.36 E-value=4.9e+02 Score=24.52 Aligned_cols=19 Identities=11% Similarity=-0.113 Sum_probs=13.2
Q ss_pred ceeEEEecCCcEEEEeCCC
Q 015656 248 LHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 248 ~~~~~l~~~G~v~~wG~n~ 266 (403)
.+.++.+.+|.||++-...
T Consensus 321 ~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CEEEEEeCCCEEEEEECCC
Confidence 4666777888888885433
No 70
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=29.16 E-value=8e+02 Score=26.97 Aligned_cols=133 Identities=12% Similarity=-0.038 Sum_probs=66.9
Q ss_pred CCceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceE-eecCcCceEEEecCCc-----eeEEEecC
Q 015656 70 KHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQISTGYH-----HSSAITVD 141 (403)
Q Consensus 70 ~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~-v~~~~~~i~~i~~G~~-----~~~~l~~~ 141 (403)
+..+..+.... .+.+++|+.|++|.-=...--.............-.. +....++|+.+.+-.+ +.+++|++
T Consensus 551 ~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 551 GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 33455554444 4457889999999865433222111100000000000 1101346777666532 46889999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC-----CceEEEeCCCcEEEeeCCCCCCcCC
Q 015656 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGH 211 (403)
Q Consensus 142 G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~lt~~G~v~~~G~n~~gqlG~ 211 (403)
|.|--.=-..+-. .. ..-..+..-++..++.+.... .+.+++|++|.+..|-.+.--.+|.
T Consensus 631 G~VKrt~L~ef~~------~r---~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 631 GGIKKTSLDKFVT------NY---TKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CeEEEEehhhccc------cc---cceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 9887654332210 00 011122222344566554433 3578899999988887655444443
No 71
>PF13964 Kelch_6: Kelch motif
Probab=28.37 E-value=59 Score=20.39 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.1
Q ss_pred CeEEEEECCcEEEecC
Q 015656 331 KHTAAISEGKILTWGW 346 (403)
Q Consensus 331 ~h~~~lt~g~v~~wG~ 346 (403)
.|+++..++++|++|=
T Consensus 4 ~~s~v~~~~~iyv~GG 19 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGG 19 (50)
T ss_pred cCEEEEECCEEEEECC
Confidence 4556555999999994
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=27.81 E-value=4.5e+02 Score=23.64 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=23.7
Q ss_pred cceeeeCccCCCceEEEE-eCCcceEEE-ecCCcEEEEEc
Q 015656 60 WRPVVCSAFEKHSLKALA-CGGAHTLFL-TETGCVYATGL 97 (403)
Q Consensus 60 ~~p~~v~~~~~~~i~~i~-~G~~~~~~l-t~~g~vy~wG~ 97 (403)
.+|..+..-++ -|+.+- |-..++++- ++++.|-.|-.
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEe
Confidence 45555554333 366554 677777665 77899999964
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.79 E-value=2.7e+02 Score=26.65 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=43.5
Q ss_pred eEEEEEeCCCc---eEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEe
Q 015656 178 FTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254 (403)
Q Consensus 178 ~i~~i~~G~~~---~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~ 254 (403)
.++++.++.++ .+++..+|++.-|-.+.- +.++ .....+.+|..-.-..+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W-----------------------t~l~-~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL-----------------------KALK-QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee-----------------------eEcc-CCCceeeEEEEECCEEEEEc
Confidence 45557777775 677778899988853211 1121 13346888888888899999
Q ss_pred cCCcEEEEe
Q 015656 255 ENGRVYIFG 263 (403)
Q Consensus 255 ~~G~v~~wG 263 (403)
..|+||.+-
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 999999886
No 74
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=27.79 E-value=7.9e+02 Score=26.41 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=81.9
Q ss_pred cccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCc--cceeeeCccCCCceEEEEeCC-----cceEEEecC
Q 015656 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESR--WRPVVCSAFEKHSLKALACGG-----AHTLFLTET 89 (403)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~--~~p~~v~~~~~~~i~~i~~G~-----~~~~~lt~~ 89 (403)
|....+..+..|.-++.-+++|.+|..=.. +|-....... .....+...++++|+.+.+-. ...+++|++
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~ 611 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN 611 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC
Confidence 333333333444433333478888888332 2211111111 111123334667788777622 246778999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEE--ecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCccccc
Q 015656 90 GCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI--STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPI 167 (403)
Q Consensus 90 g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i--~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~ 167 (403)
|.+--.=.+.+-.... ....-..+.. .+.++.+ +...++.+++|++|++|..-...--..+....-. .
T Consensus 612 GyiKRi~l~~~~~~~r-----~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv---~- 681 (800)
T TIGR01063 612 GVVKKTSLTEFSNIRS-----NGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV---R- 681 (800)
T ss_pred CEEEEEEhHHhhhhcc-----CCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe---e-
Confidence 9776654332211000 0000011111 2234433 3344678999999999988654433333221111 0
Q ss_pred CeEEeecCCceEEEEEeC--CCceEEEeCCCcEEEee
Q 015656 168 PTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 168 p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~~G 202 (403)
.+..-++.+|+.+.+- ..+.+++|++|.+.-.-
T Consensus 682 --~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 682 --GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred --cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 1222244566666542 33577888888777654
No 75
>PF13854 Kelch_5: Kelch motif
Probab=27.05 E-value=76 Score=19.19 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.0
Q ss_pred CCeEEEEECCcEEEecC
Q 015656 330 WKHTAAISEGKILTWGW 346 (403)
Q Consensus 330 ~~h~~~lt~g~v~~wG~ 346 (403)
..|++++.++++|++|=
T Consensus 6 ~~hs~~~~~~~iyi~GG 22 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGG 22 (42)
T ss_pred cceEEEEECCEEEEEcC
Confidence 35666666999999983
No 76
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=26.76 E-value=1.1e+02 Score=21.97 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=24.5
Q ss_pred ceEEEEeC-CcceEEEecCCcEEEEEcCCCCCC
Q 015656 72 SLKALACG-GAHTLFLTETGCVYATGLNDFGQL 103 (403)
Q Consensus 72 ~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~gql 103 (403)
.=..|+|. .+..++|+.||.+|.-+--..|++
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45689999 888899999999999986556653
No 77
>PHA02790 Kelch-like protein; Provisional
Probab=26.56 E-value=6e+02 Score=25.19 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=11.6
Q ss_pred ceeEEEecCCcEEEEEcC
Q 015656 133 HHSSAITVDGELYMWGKN 150 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n 150 (403)
.|++ ..-+|+||+.|..
T Consensus 355 ~~~~-~~~~g~IYviGG~ 371 (480)
T PHA02790 355 NPAV-ASINNVIYVIGGH 371 (480)
T ss_pred ccEE-EEECCEEEEecCc
Confidence 3444 4458999999864
No 78
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=26.51 E-value=6e+02 Score=24.63 Aligned_cols=25 Identities=12% Similarity=-0.093 Sum_probs=18.6
Q ss_pred ceEEEEEeC--CCceEEEeCCCcEEEe
Q 015656 177 IFTKQAALG--FEQSVAVTGGGKVLSW 201 (403)
Q Consensus 177 ~~i~~i~~G--~~~~~~lt~~G~v~~~ 201 (403)
.++.+++.. ..+.++++++|++|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 357777766 3467778899999976
No 79
>PHA03092 semaphorin-like protein; Provisional
Probab=26.20 E-value=95 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=35.3
Q ss_pred ecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCC
Q 015656 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNE 296 (403)
Q Consensus 254 ~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~ 296 (403)
.-+|.||.+-.|.-..-|+.+.....+..+++|..-..+|.|.
T Consensus 39 gvngavytfsnn~lnktglan~nyittsikved~dtlvcgtnn 81 (134)
T PHA03092 39 GVNGAVYTFSNNKLNKTGLANTNYITTSIKVEDKDTLVCGTNN 81 (134)
T ss_pred ccCceEEEecCCccccccccccceEEEEEEEccCceEEEecCC
Confidence 3478899999999888888887777888888877778888776
No 80
>PHA03098 kelch-like protein; Provisional
Probab=25.82 E-value=6.8e+02 Score=25.03 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=12.2
Q ss_pred ceeEEEecCCcEEEEEcCC
Q 015656 133 HHSSAITVDGELYMWGKNS 151 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n~ 151 (403)
.|+++. -+++||++|...
T Consensus 335 ~~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred cceEEE-ECCEEEEEeCCC
Confidence 455544 478999999643
No 81
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=25.80 E-value=3.1e+02 Score=21.14 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=38.1
Q ss_pred EEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCc
Q 015656 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258 (403)
Q Consensus 179 i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~ 258 (403)
.+++.|-..+.+.+..||.|-+-+.... .........+.. . .|.--.+-....+++++.|+
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~~----------------~~s~~~i~~~~~-g--~V~i~~~~s~~YLcmn~~G~ 62 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDNS----------------PYSVFEIHSVGF-G--VVRIRGVKSCRYLCMNKCGR 62 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTTS----------------TTGEEEEEEEET-T--EEEEEETTTTEEEEEBTTSB
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcCc----------------ceeEEEEEeccc-e--EEEEEEecceEEEEECCCCe
Confidence 5677777778889999999988765311 011111111111 1 22222333456799999999
Q ss_pred EEEE
Q 015656 259 VYIF 262 (403)
Q Consensus 259 v~~w 262 (403)
||.-
T Consensus 63 ly~~ 66 (122)
T PF00167_consen 63 LYGS 66 (122)
T ss_dssp EEEE
T ss_pred Eccc
Confidence 9974
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=25.38 E-value=8.1e+02 Score=25.77 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=58.8
Q ss_pred EEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCc-EEEEEcCCCCC
Q 015656 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGE-LYMWGKNSNGQ 154 (403)
Q Consensus 76 i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~-v~~wG~n~~gq 154 (403)
++.|..|-+++. ||.|-.|..+. ..+ +..+|..++-..+-++++|.-++ |-.|-- |
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~a------------snk---iss~Vsav~fsEdgSYfvT~gnrHvk~wyl----~ 194 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGA------------SNK---ISSVVSAVAFSEDGSYFVTSGNRHVKLWYL----Q 194 (1080)
T ss_pred EeeccccceEEE----hhhhhhccccc------------ccc---cceeEEEEEEccCCceeeeeeeeeEEEEEe----e
Confidence 445777777776 77787665432 011 22356666666666666664332 333311 1
Q ss_pred CCCCCCCCcccccCeEEe---ecCCceEEEEEeCCC----ceEEEeCCCcEEEeeC
Q 015656 155 LGLGKKAAKVIPIPTKVE---CLSGIFTKQAALGFE----QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 155 lg~~~~~~~~~~~p~~~~---~~~~~~i~~i~~G~~----~~~~lt~~G~v~~~G~ 203 (403)
.+ .......|.|-+-. .+....+.+|+||.. .++++|..|.+.-|-+
T Consensus 195 ~~--~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 195 IQ--SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cc--ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 11 11121233443322 344556889999987 8999999999988754
No 83
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=25.00 E-value=89 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=18.6
Q ss_pred CCceEEEEEeCCCceEEEeCCC
Q 015656 175 SGIFTKQAALGFEQSVAVTGGG 196 (403)
Q Consensus 175 ~~~~i~~i~~G~~~~~~lt~~G 196 (403)
++.+|+++..|..++++..++|
T Consensus 10 ~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 10 PDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp GC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCEEEEEEEcCCEEEEEeCCC
Confidence 4678999999999999999998
No 84
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.17 E-value=1.2e+02 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.7
Q ss_pred ccCceEEEEEecCceeEEEecCC
Q 015656 235 LEGVKVKIAAAGFLHSACIDENG 257 (403)
Q Consensus 235 ~~~~~i~~i~~G~~~~~~l~~~G 257 (403)
.++.+|+++..|-.++++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 34568999999999999999997
No 85
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.12 E-value=1.6e+02 Score=31.88 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=22.0
Q ss_pred eEEEEE-eCCCceEEEe--CCCcEEEeeCCCCCCcCC
Q 015656 178 FTKQAA-LGFEQSVAVT--GGGKVLSWGAGGSGRLGH 211 (403)
Q Consensus 178 ~i~~i~-~G~~~~~~lt--~~G~v~~~G~n~~gqlG~ 211 (403)
-|..++ |..+-.++|+ +|+++++|+-|..-+|+-
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 355554 4555345554 689999999887555554
No 86
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=22.71 E-value=6.1e+02 Score=23.35 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=11.9
Q ss_pred cceEEEecCCcEEEEEcC
Q 015656 81 AHTLFLTETGCVYATGLN 98 (403)
Q Consensus 81 ~~~~~lt~~g~vy~wG~n 98 (403)
.|++++ -+++||++|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455544 47899999964
No 87
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.62 E-value=6.8e+02 Score=23.86 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=33.8
Q ss_pred CceEEEEeCCc-ce-EEEecCCc-EEEEEcCCCCCCCCCCCCCceecceEeecCc-CceEEEecCC-ceeEEEecCCcEE
Q 015656 71 HSLKALACGGA-HT-LFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGY-HHSSAITVDGELY 145 (403)
Q Consensus 71 ~~i~~i~~G~~-~~-~~lt~~g~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~-~~i~~i~~G~-~~~~~l~~~G~v~ 145 (403)
+.+..|..|.. |. ++.+.||+ +|+.+. .|.+ ..+.... +.+..|..|. -+.++++.||+..
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE------------EEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 34677777654 54 45678886 777642 2321 2222222 2566777776 4678888899865
Q ss_pred EEEc
Q 015656 146 MWGK 149 (403)
Q Consensus 146 ~wG~ 149 (403)
.-+.
T Consensus 93 ~v~n 96 (369)
T PF02239_consen 93 YVAN 96 (369)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.50 E-value=5.8e+02 Score=23.01 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=27.3
Q ss_pred ceecceEeecCcCceEEE-ecCCceeEEE-ecCCcEEEEEc
Q 015656 111 YSLEPLRISGLKKEVVQI-STGYHHSSAI-TVDGELYMWGK 149 (403)
Q Consensus 111 ~~~~p~~v~~~~~~i~~i-~~G~~~~~~l-~~~G~v~~wG~ 149 (403)
...+|..+..-+..|+.+ -|-.+++++- ++++.|-.|-.
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 345677777666667664 5667777665 67899999964
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.13 E-value=3.5e+02 Score=26.11 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred eEEeccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccC----CCc-eEEEEeCCcceEEE
Q 015656 12 YYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE----KHS-LKALACGGAHTLFL 86 (403)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~----~~~-i~~i~~G~~~~~~l 86 (403)
.+.++.-+...++.....++++...+.++..|-.-+ +..+.... +.. |.+--.|.+-.++.
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e--------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE--------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch--------------hhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 334444555566666667777777777888886442 22222211 112 33333444434444
Q ss_pred --ecCCcEEEEEc
Q 015656 87 --TETGCVYATGL 97 (403)
Q Consensus 87 --t~~g~vy~wG~ 97 (403)
.+|++||.|-.
T Consensus 457 SGSED~kvyIWhr 469 (519)
T KOG0293|consen 457 SGSEDSKVYIWHR 469 (519)
T ss_pred ecCCCceEEEEEc
Confidence 58999999964
No 90
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.73 E-value=3.3e+02 Score=24.29 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=37.1
Q ss_pred EEEeCCc-ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEE-EecCCceeEEEecCCcEEEEEcC
Q 015656 75 ALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ-ISTGYHHSSAITVDGELYMWGKN 150 (403)
Q Consensus 75 ~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~-i~~G~~~~~~l~~~G~v~~wG~n 150 (403)
+++.++. -+..+..||+|++.|-....-.-.-........+..+..+. ...+ ......=.+.|.-+|+||.++.+
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~-~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLS-QTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecch-hhhccCccccCceEEEcCCCCEEEEEcC
Confidence 3566654 46778899999999844311000000000011122222121 1111 12223335677789999999875
No 91
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=20.22 E-value=4.1e+02 Score=20.46 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=40.9
Q ss_pred eEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEE
Q 015656 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (403)
Q Consensus 73 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~w 147 (403)
.+++-|-..+.+.+..||.|-.-++.. +....+....+.. ..|.--++-....++++++|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~--------~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN--------SPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT--------STTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC--------cceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEccc
Confidence 567777778888999999998776431 1222233333331 2333334444667999999999984
Done!