Query 015656
Match_columns 403
No_of_seqs 287 out of 2146
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 1.4E-72 4.7E-77 540.8 31.6 349 29-402 11-387 (389)
2 4d9s_A UVB-resistance protein 100.0 1.6E-69 5.5E-74 522.1 38.4 344 11-381 10-378 (406)
3 3mvd_K Regulator of chromosome 100.0 1.9E-68 6.4E-73 518.3 39.6 367 14-403 21-419 (423)
4 1a12_A RCC1, regulator of chro 100.0 1.8E-68 6E-73 516.6 38.2 358 22-402 13-409 (413)
5 3of7_A Regulator of chromosome 100.0 1.3E-67 4.6E-72 518.3 35.1 358 20-402 13-450 (473)
6 4d9s_A UVB-resistance protein 100.0 2.6E-63 8.8E-68 478.8 35.5 308 70-402 15-347 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 4.2E-61 1.4E-65 461.0 29.3 305 18-337 54-385 (389)
8 1a12_A RCC1, regulator of chro 100.0 4.1E-59 1.4E-63 451.0 32.6 311 17-341 59-412 (413)
9 3mvd_K Regulator of chromosome 100.0 8.2E-59 2.8E-63 450.6 31.8 303 69-402 22-364 (423)
10 3of7_A Regulator of chromosome 100.0 1.7E-56 5.7E-61 439.5 31.7 310 18-337 68-448 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 5.6E-51 1.9E-55 372.5 26.8 248 19-403 26-273 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 8.7E-47 3E-51 344.8 25.2 233 39-400 3-235 (282)
13 1p22_A F-BOX/WD-repeat protein 96.9 0.3 1E-05 46.0 28.5 181 28-264 143-323 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.53 1.8E-05 44.4 32.3 249 27-346 128-389 (445)
15 4gbf_A Phikz131; 7-bladed beta 96.3 0.0084 2.9E-07 51.3 7.0 72 71-155 309-380 (400)
16 1p22_A F-BOX/WD-repeat protein 95.8 1.3 4.5E-05 41.5 25.6 181 27-263 182-362 (435)
17 4gbf_A Phikz131; 7-bladed beta 95.6 0.037 1.3E-06 47.4 7.6 71 124-209 310-380 (400)
18 2ovr_B FBW7, F-BOX/WD repeat p 95.4 1.8 6E-05 40.6 30.1 178 28-266 169-348 (445)
19 3odt_A Protein DOA1; ubiquitin 93.1 4 0.00014 35.5 27.0 105 70-203 104-212 (313)
20 4aez_A CDC20, WD repeat-contai 92.5 6.4 0.00022 36.2 24.4 137 31-203 106-246 (401)
21 1gxr_A ESG1, transducin-like e 92.2 5.7 0.0002 34.9 30.7 190 36-267 19-215 (337)
22 1gxr_A ESG1, transducin-like e 91.7 6.5 0.00022 34.5 26.7 106 71-203 142-253 (337)
23 4g56_B MGC81050 protein; prote 91.5 7.8 0.00027 35.1 24.5 108 71-202 140-255 (357)
24 2zwa_A Leucine carboxyl methyl 90.5 16 0.00054 36.8 20.1 104 80-203 441-558 (695)
25 3zwl_B Eukaryotic translation 89.6 11 0.00037 33.5 26.9 192 28-266 44-249 (369)
26 3v7d_B Cell division control p 89.4 14 0.00046 34.5 30.6 193 30-269 175-384 (464)
27 3k26_A Polycomb protein EED; W 88.4 13 0.00044 32.9 27.7 109 71-204 70-191 (366)
28 2zwa_A Leucine carboxyl methyl 87.7 25 0.00084 35.4 18.1 18 248-265 657-674 (695)
29 4gqb_B Methylosome protein 50; 85.8 20 0.00067 32.3 26.3 100 30-149 95-199 (344)
30 1yfq_A Cell cycle arrest prote 84.1 21 0.00072 31.3 23.1 149 30-204 71-224 (342)
31 3v7d_B Cell division control p 83.2 29 0.00099 32.2 28.9 235 73-346 125-379 (464)
32 1r5m_A SIR4-interacting protei 82.0 29 0.00099 31.3 22.6 57 29-98 121-179 (425)
33 3mmy_A MRNA export factor; mRN 81.3 28 0.00095 30.6 25.6 151 69-266 38-199 (368)
34 1sq9_A Antiviral protein SKI8; 81.2 30 0.001 31.0 20.0 109 70-203 186-320 (397)
35 3jrp_A Fusion protein of prote 79.7 32 0.0011 30.4 27.8 141 28-202 23-188 (379)
36 3uc1_A DNA gyrase subunit A; D 79.6 34 0.0012 30.7 16.5 162 77-261 50-223 (327)
37 1xip_A Nucleoporin NUP159; bet 79.1 37 0.0013 31.3 13.5 73 113-202 79-152 (388)
38 1xip_A Nucleoporin NUP159; bet 77.3 40 0.0014 31.1 13.2 64 73-149 90-153 (388)
39 1r5m_A SIR4-interacting protei 76.6 43 0.0015 30.1 22.1 136 30-203 219-359 (425)
40 2aq5_A Coronin-1A; WD40 repeat 76.5 44 0.0015 30.2 24.1 146 30-203 49-205 (402)
41 2aq5_A Coronin-1A; WD40 repeat 76.1 45 0.0015 30.2 25.2 156 76-266 40-207 (402)
42 3vl1_A 26S proteasome regulato 71.9 57 0.002 29.4 29.9 95 82-203 111-210 (420)
43 3mkq_A Coatomer beta'-subunit; 70.4 92 0.0031 31.2 28.2 144 23-203 20-170 (814)
44 1k3i_A Galactose oxidase precu 68.3 33 0.0011 34.0 11.0 56 134-203 246-305 (656)
45 1suu_A DNA gyrase subunit A; t 68.3 64 0.0022 28.6 17.6 171 70-263 46-228 (312)
46 3jro_A Fusion protein of prote 68.3 1E+02 0.0035 30.9 26.5 144 28-203 21-187 (753)
47 1k3i_A Galactose oxidase precu 67.1 1E+02 0.0035 30.4 24.3 56 82-149 246-305 (656)
48 4a11_B DNA excision repair pro 65.8 73 0.0025 28.3 29.6 204 28-266 56-276 (408)
49 3i2n_A WD repeat-containing pr 65.7 68 0.0023 27.9 27.7 110 71-203 66-197 (357)
50 1sq9_A Antiviral protein SKI8; 65.0 76 0.0026 28.2 25.7 154 29-203 82-265 (397)
51 3jrp_A Fusion protein of prote 64.0 76 0.0026 27.8 24.5 111 71-203 12-132 (379)
52 3sfz_A APAF-1, apoptotic pepti 61.6 1.7E+02 0.0058 31.1 24.5 66 72-150 1005-1073(1249)
53 3k26_A Polycomb protein EED; W 61.4 82 0.0028 27.4 18.5 156 70-266 18-192 (366)
54 1k8k_C P40, ARP2/3 complex 41 60.8 86 0.003 27.4 26.0 147 27-203 19-171 (372)
55 3no0_A DNA gyrase subunit A; D 60.3 85 0.0029 27.2 14.5 162 69-262 22-192 (276)
56 2xyi_A Probable histone-bindin 57.2 1.2E+02 0.004 27.8 30.1 158 28-204 141-308 (430)
57 3odt_A Protein DOA1; ubiquitin 57.2 89 0.003 26.4 32.0 139 27-202 28-171 (313)
58 3l6v_A GYRA, DNA gyrase subuni 56.9 1.2E+02 0.004 27.7 17.0 133 70-211 45-186 (370)
59 3uc1_A DNA gyrase subunit A; D 56.9 1.1E+02 0.0037 27.4 23.5 226 16-266 41-279 (327)
60 1yfq_A Cell cycle arrest prote 56.2 99 0.0034 26.7 29.7 150 28-204 23-178 (342)
61 1erj_A Transcriptional repress 54.8 1.2E+02 0.0041 27.3 19.6 78 124-203 258-339 (393)
62 4aow_A Guanine nucleotide-bind 54.6 1E+02 0.0035 26.5 27.8 62 29-97 52-115 (340)
63 2ynn_A Coatomer subunit beta'; 52.6 1.1E+02 0.0038 26.2 29.0 148 19-203 16-170 (304)
64 2woz_A Kelch repeat and BTB do 50.2 1.3E+02 0.0043 26.2 16.9 17 133-150 102-118 (318)
65 1vyh_C Platelet-activating fac 48.2 1.6E+02 0.0054 26.7 26.8 98 28-149 120-221 (410)
66 3p6j_A De novo designed beta-t 47.8 94 0.0032 24.0 14.1 107 69-200 28-138 (142)
67 3jro_A Fusion protein of prote 46.4 2.4E+02 0.0081 28.2 23.4 110 72-203 11-130 (753)
68 1zi0_A DNA gyrase subunit A; b 45.9 1.6E+02 0.0053 26.0 17.2 164 74-257 47-217 (307)
69 3mmy_A MRNA export factor; mRN 45.9 1.5E+02 0.005 25.7 21.3 137 29-203 55-197 (368)
70 3ii7_A Kelch-like protein 7; p 43.9 1.5E+02 0.0053 25.3 15.6 16 187-203 193-208 (306)
71 1pgu_A Actin interacting prote 41.8 2.3E+02 0.0079 26.8 26.3 108 71-203 161-281 (615)
72 4g56_B MGC81050 protein; prote 41.1 1.9E+02 0.0065 25.5 25.4 70 124-203 96-168 (357)
73 4aow_A Guanine nucleotide-bind 38.9 1.8E+02 0.0063 24.8 22.4 91 86-203 191-284 (340)
74 2xyi_A Probable histone-bindin 37.8 2.3E+02 0.008 25.6 24.8 148 30-204 196-352 (430)
75 2pm9_A Protein WEB1, protein t 37.5 2.2E+02 0.0074 25.2 18.7 76 71-149 114-195 (416)
76 3ow8_A WD repeat-containing pr 37.5 2E+02 0.0069 24.9 26.7 138 29-202 49-192 (321)
77 2pm9_A Protein WEB1, protein t 37.3 2.2E+02 0.0075 25.2 25.0 72 71-150 68-144 (416)
78 3no0_A DNA gyrase subunit A; D 36.4 2.1E+02 0.0071 24.7 19.2 213 16-266 23-246 (276)
79 3i2n_A WD repeat-containing pr 36.4 2.1E+02 0.007 24.6 24.7 110 70-203 18-146 (357)
80 2xzm_R RACK1; ribosome, transl 36.0 2.2E+02 0.0074 24.8 25.7 105 28-149 39-147 (343)
81 1k8k_C P40, ARP2/3 complex 41 35.4 2.2E+02 0.0075 24.7 23.4 123 71-203 97-231 (372)
82 1wp5_A Topoisomerase IV; broke 34.7 2.4E+02 0.0083 24.9 16.7 164 74-257 44-216 (323)
83 3no2_A Uncharacterized protein 34.7 2.1E+02 0.0073 24.3 19.1 26 124-149 137-163 (276)
84 4aez_A CDC20, WD repeat-contai 34.3 2.5E+02 0.0086 25.0 27.6 148 73-266 96-248 (401)
85 4gga_A P55CDC, cell division c 33.0 2.7E+02 0.0093 25.0 27.2 67 71-149 148-216 (420)
86 3mkq_A Coatomer beta'-subunit; 32.8 3.7E+02 0.013 26.6 26.3 139 29-203 68-215 (814)
87 1pgu_A Actin interacting prote 31.4 3.4E+02 0.011 25.6 31.8 57 79-149 308-364 (615)
88 1zgk_A Kelch-like ECH-associat 31.1 2.5E+02 0.0086 24.0 11.1 17 133-150 161-177 (308)
89 3dm0_A Maltose-binding peripla 30.8 3.9E+02 0.013 26.1 26.2 101 29-148 396-500 (694)
90 3no2_A Uncharacterized protein 29.9 2.6E+02 0.0088 23.8 18.5 26 124-149 89-116 (276)
91 3ow8_A WD repeat-containing pr 29.4 2.8E+02 0.0094 23.9 21.4 106 72-203 166-277 (321)
92 3sfz_A APAF-1, apoptotic pepti 28.9 5.4E+02 0.018 27.2 25.6 107 71-203 658-772 (1249)
93 2vpj_A Kelch-like protein 12; 28.7 2.7E+02 0.0092 23.6 15.3 183 132-345 53-260 (301)
94 1got_B GT-beta; complex (GTP-b 27.4 3E+02 0.01 23.8 22.3 175 31-262 157-339 (340)
95 3p6j_A De novo designed beta-t 26.7 2.2E+02 0.0074 21.9 12.5 66 123-201 30-97 (142)
96 1q7f_A NHL, brain tumor CG1071 26.3 2.8E+02 0.0096 23.0 19.5 149 82-301 124-285 (286)
97 3ei3_B DNA damage-binding prot 24.7 3.5E+02 0.012 23.6 28.8 181 29-266 87-282 (383)
98 2uvk_A YJHT; unknown function, 23.8 1E+02 0.0034 27.3 5.4 17 186-203 110-126 (357)
99 1vyh_C Platelet-activating fac 22.5 4.2E+02 0.014 23.7 21.8 55 134-202 310-366 (410)
100 4ery_A WD repeat-containing pr 22.1 3.5E+02 0.012 22.7 28.1 138 28-203 35-178 (312)
101 4asc_A Kelch repeat and BTB do 21.2 2.8E+02 0.0096 23.8 7.8 108 80-202 140-250 (315)
102 2xn4_A Kelch-like protein 2; s 20.3 3.9E+02 0.013 22.5 13.4 17 330-346 196-212 (302)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-72 Score=540.76 Aligned_cols=349 Identities=30% Similarity=0.496 Sum_probs=311.1
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN 108 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 108 (403)
..+...+++|+||+||+|.+||||.++......|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~- 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG- 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-
Confidence 3344445999999999999999999988888999999988888999999999999999999999999999999999984
Q ss_pred CCceecceEeecCcC---ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeC
Q 015656 109 IGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (403)
Q Consensus 109 ~~~~~~p~~v~~~~~---~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G 185 (403)
......|..++.+.. ++++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+..+.+.+|++|+||
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEEC
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEEeC
Confidence 455667888876554 568999999999999999999999999999999988765 567888888888899999999
Q ss_pred CCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecC--ceeEEEecCCcEEEEe
Q 015656 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFG 263 (403)
Q Consensus 186 ~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG 263 (403)
.+|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.+.+|++|+||. .|+++|+++|+||+||
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 99999999999999999999999999875 556789999988888999999995 8999999999999999
Q ss_pred CCCcceecccCCCCccCCeEec----------------------CCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCC
Q 015656 264 DRAVDKMLFQEGNHARRPSLIS----------------------GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES 321 (403)
Q Consensus 264 ~n~~gqlg~~~~~~~~~p~~v~----------------------~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~ 321 (403)
.|.++|||.+.......|.++. +|+||+||.|.++|||.++......|+++.. +.+.
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~ 317 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGK 317 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTC
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc-CCCC
Confidence 9999999998877766676654 8999999999999999999988999999984 4677
Q ss_pred CEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEEEEecCCCceEEEE
Q 015656 322 PVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALL 400 (403)
Q Consensus 322 ~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~ 400 (403)
+|++|+||.+|++|++ +|+||+||+ |.+||||.++..+...|++|+.+.+.++.+|+||.+||++|+
T Consensus 318 ~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 318 KVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence 8999999999999999 999999999 799999999999999999999999999999999999999998
Q ss_pred ee
Q 015656 401 EY 402 (403)
Q Consensus 401 ~~ 402 (403)
++
T Consensus 386 ~~ 387 (389)
T 3kci_A 386 TS 387 (389)
T ss_dssp C-
T ss_pred cC
Confidence 76
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.6e-69 Score=522.11 Aligned_cols=344 Identities=33% Similarity=0.597 Sum_probs=309.7
Q ss_pred eeEEeccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCC
Q 015656 11 KYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG 90 (403)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g 90 (403)
++..+...+..+++|..|+++++ .++.||+||+|.+||||.++..+...|+++..+.+.+|++|+||..|+++|+++|
T Consensus 10 ~v~~~~~~v~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 10 EVTAPPRKVLIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp -----CCCEEEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTT
T ss_pred cCCCCccceEEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCC
Confidence 34445566778899999999999 8889999999999999999999999999999999889999999999999999986
Q ss_pred -cEEEEEcCCCCCCCCCCCCCceecceEeecCcC-ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccC
Q 015656 91 -CVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (403)
Q Consensus 91 -~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p 168 (403)
+||+||.|.+||||.+.. .....|.+++.+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|
T Consensus 88 g~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p 164 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVP 164 (406)
T ss_dssp TEEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEE
T ss_pred CEEEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccc
Confidence 999999999999999844 55678888876654 899999999999999999999999999999999998765 5678
Q ss_pred eEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCc
Q 015656 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL 248 (403)
Q Consensus 169 ~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~ 248 (403)
.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+...+|++|+||.+
T Consensus 165 ~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~---------~~~~~p~~v~~~~~~~i~~va~G~~ 235 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR---------TDRLVPERVTSTGGEKMSMVACGWR 235 (406)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS---------CCEEEEEECCCSTTCCEEEEEECSS
T ss_pred eEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC---------CCcCccEEecccCCceEEEEEECCC
Confidence 8888888889999999999999999999999999999999999875 4567888888888789999999999
Q ss_pred eeEEEecCCcEEEEeCCCcceecccCCCCccCCeEec----------------------CCcEEEeecCCCCCcCCCCCC
Q 015656 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS----------------------GGELYTWGSNENGCLGIGSID 306 (403)
Q Consensus 249 ~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~----------------------~g~v~~wG~n~~gqlG~g~~~ 306 (403)
|+++|+++|+||+||.|.++|||.+...+...|.++. +|+||+||.|.+||||.++..
T Consensus 236 ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 315 (406)
T 4d9s_A 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315 (406)
T ss_dssp EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSS
T ss_pred cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCC
Confidence 9999999999999999999999999877776776654 899999999999999999988
Q ss_pred ccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecC
Q 015656 307 VLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFG 381 (403)
Q Consensus 307 ~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~ 381 (403)
....|+++..+ ...+|++|+||.+|++||+ +|+||+||+ |.+||||+++..+...|++|+.+
T Consensus 316 ~~~~p~~v~~~-~~~~v~~va~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~l 378 (406)
T 4d9s_A 316 DQCSPVQVRFP-DDQKVVQVSCGWRHTLAVTERNNVFAWGR------------GTNGQLGIGESVDRNFPKIIEAL 378 (406)
T ss_dssp CEEEEEEECCG-GGCCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGG
T ss_pred CCccCEEEecc-CCCcEEEEEeCCCeEEEEeCCCCEEEecC------------CCCCccCCCCCCCCcCCEEeeee
Confidence 88899998743 5578999999999999999 999999999 79999999999999999999854
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-68 Score=518.29 Aligned_cols=367 Identities=25% Similarity=0.351 Sum_probs=307.2
Q ss_pred EeccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCC-CCccceeeeCccCCCceEEEEeCCcceEEEecCCcE
Q 015656 14 LKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCV 92 (403)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v 92 (403)
..+....+++++..|..+++ .+++||+||.|.+||||.++. .....|+++..+.+ |++|+||..|+++|+++|+|
T Consensus 21 ~~~~~~~~ia~g~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~v 96 (423)
T 3mvd_K 21 PPKAKRARIAFHLELPKRRT--VLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGDI 96 (423)
T ss_dssp --------CCCCCCCCCCCC--CCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSCE
T ss_pred CccceeeEEecCCccceeec--CCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCeE
Confidence 34455667899999999998 999999999999999999964 45678998887764 99999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCC-ceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEc--CCCCCCCCCCCCCcccccCe
Q 015656 93 YATGLNDFGQLGISENIG-YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPT 169 (403)
Q Consensus 93 y~wG~n~~gqlG~~~~~~-~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~--n~~gqlg~~~~~~~~~~~p~ 169 (403)
|+||.|.+||||.+.... ....|.++. +..+|++|+||..|+++|+++|+||+||. |.+||||.+.... .+.|.
T Consensus 97 ~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~p~ 173 (423)
T 3mvd_K 97 YSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRTPI 173 (423)
T ss_dssp EEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEEEE
T ss_pred EEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--Cceee
Confidence 999999999999986543 356788887 55699999999999999999999999998 9999999987655 34443
Q ss_pred EEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccc--ccccccccceeeccccCceEEEEEecC
Q 015656 170 KVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKELEGVKVKIAAAGF 247 (403)
Q Consensus 170 ~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~G~ 247 (403)
. .+...+|++|+||.+|+++|+++|+||+||.|.+||||.+........ ........|.++......+|++|+||.
T Consensus 174 ~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~ 251 (423)
T 3mvd_K 174 D--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN 251 (423)
T ss_dssp E--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET
T ss_pred E--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC
Confidence 3 456778999999999999999999999999999999999875332111 112355688888877777899999999
Q ss_pred ceeEEE-ecCCcEEEEeCCCcceecccCCCC--ccCCeEec-------------------CCcEEEeecCCCCCcCCCCC
Q 015656 248 LHSACI-DENGRVYIFGDRAVDKMLFQEGNH--ARRPSLIS-------------------GGELYTWGSNENGCLGIGSI 305 (403)
Q Consensus 248 ~~~~~l-~~~G~v~~wG~n~~gqlg~~~~~~--~~~p~~v~-------------------~g~v~~wG~n~~gqlG~g~~ 305 (403)
+|++++ +++|+||+||.|.++|||.+.... ...|.++. +|+||+||.|.+||||.++.
T Consensus 252 ~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~ 331 (423)
T 3mvd_K 252 YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV 331 (423)
T ss_dssp TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSC
T ss_pred cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCc
Confidence 999999 699999999999999999954332 23333321 99999999999999999976
Q ss_pred Cc-cccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEec--C
Q 015656 306 DV-LHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF--G 381 (403)
Q Consensus 306 ~~-~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~--~ 381 (403)
.. ...|++++. +.. +|++|+||.+|++||+ +|+||+||+ |.+||||.++..+...|++|.. +
T Consensus 332 ~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~ 397 (423)
T 3mvd_K 332 KDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGS------------GVNNQLGVGDGDDELEPIVVVSKNT 397 (423)
T ss_dssp CSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEEC------------CTTSCSSSSSSCCEEEEEECCSTTT
T ss_pred cccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECC------------CCCCCCCCCCCCCcccCeEEeCccc
Confidence 55 567888874 333 8999999999999999 999999999 7999999999999999999985 6
Q ss_pred CCceEEEEecCCCceEEEEeeC
Q 015656 382 ENVKALQVSCGFNHTGALLEYV 403 (403)
Q Consensus 382 ~~~~~~~i~~G~~~t~~l~~~~ 403 (403)
.+.++++|+||.+||++|++++
T Consensus 398 ~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 398 QGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp TTCCEEEEEECSSEEEEEEECC
T ss_pred CCCEEEEEEECCCcEEEEEccc
Confidence 7889999999999999999864
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.8e-68 Score=516.58 Aligned_cols=358 Identities=29% Similarity=0.457 Sum_probs=302.4
Q ss_pred ceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCC-ccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCC
Q 015656 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDF 100 (403)
Q Consensus 22 ~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 100 (403)
...+.+|+++++ .++.||+||.|.+||||+++... ...|+++..+ .+|++|+||..|+++|+++|+||+||.|.+
T Consensus 13 ~~~~~~h~~~l~--~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 13 KKVKVSHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp CCCCCCCTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred hhhccccceeec--CCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 345568999888 88999999999999999998654 6789888854 579999999999999999999999999999
Q ss_pred CCCCCCCCC-CceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEc--CCCCCCCCCCCCCcccccCeEEeecCCc
Q 015656 101 GQLGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (403)
Q Consensus 101 gqlG~~~~~-~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~--n~~gqlg~~~~~~~~~~~p~~~~~~~~~ 177 (403)
||||.+... .....|.++. ++.+|++|+||..|+++|+++|+||+||. |.+||||.+..... ...|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~-~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKK-SMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBC-EEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcccc-ccCCEEe--cCCC
Confidence 999998653 3456788885 56699999999999999999999999998 89999998765442 3456666 3556
Q ss_pred eEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccc--cccccccccceeeccc-----cCceEEEEEecCcee
Q 015656 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG--FLRSTSEYTPRLIKEL-----EGVKVKIAAAGFLHS 250 (403)
Q Consensus 178 ~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~--~~~~~~~~~p~~i~~~-----~~~~i~~i~~G~~~~ 250 (403)
+|++|+||.+|+++|+++|+||+||.|.+||||.+....... .........|..+... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875321000 0000123567555432 345899999999999
Q ss_pred EEEecCCcEEEEeCCCcceecccCCCCccCCeEec------------------------CCcEEEeecCCCCCcCCC-CC
Q 015656 251 ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS------------------------GGELYTWGSNENGCLGIG-SI 305 (403)
Q Consensus 251 ~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~------------------------~g~v~~wG~n~~gqlG~g-~~ 305 (403)
++|+++|+||+||.|.++|||.+.......|.++. +|+||+||.|.+||||.+ ..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 99999999999999999999998776655555432 899999999999999999 56
Q ss_pred CccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEec--CC
Q 015656 306 DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF--GE 382 (403)
Q Consensus 306 ~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~--~~ 382 (403)
.....|++++.. .+|++|+||.+|++|++ +|+||+||+ |.+||||.++..+...|++|+. +.
T Consensus 325 ~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~------------n~~gqLG~g~~~~~~~P~~v~~~~~~ 389 (413)
T 1a12_A 325 EEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDEDAWSPVEMMGKQLE 389 (413)
T ss_dssp CCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSCEEEEEECCSTTTT
T ss_pred ccccCCEEeccc---CceeEEEECcceEEEEeCCCCEEEecC------------CCCCCCCCCCCCCcccCeEccccccC
Confidence 778889988753 38999999999999999 999999999 7999999999999999999984 57
Q ss_pred CceEEEEecCCCceEEEEee
Q 015656 383 NVKALQVSCGFNHTGALLEY 402 (403)
Q Consensus 383 ~~~~~~i~~G~~~t~~l~~~ 402 (403)
+.++++|+||.+||++|+++
T Consensus 390 ~~~v~~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 390 NRVVLSVSSGGQHTVLLVKD 409 (413)
T ss_dssp TEEEEEEEECSSEEEEEEEE
T ss_pred CCeEEEEeeCCCcEEEEEec
Confidence 78999999999999999976
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-67 Score=518.27 Aligned_cols=358 Identities=25% Similarity=0.393 Sum_probs=299.6
Q ss_pred ccceeeeeeeEEeeccccceEEEEecCCCCccCCCCC---CCccceeeeCcc--CCCceEEEEeCCcceEEEecCCcEEE
Q 015656 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL---ESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYA 94 (403)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~---~~~~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~ 94 (403)
........|.++++ .++.||+||.|.+||||.++. .+...|++++.+ ...+|++|+||..|+++|+++|+||+
T Consensus 13 ~~~~~~~~h~~~~~--~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 13 INAQEDYKHMYLSV--QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp CCCGGGGHHHHCCS--SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhcccccccccCC--CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 34455667888888 788999999999999999984 346778888876 56789999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCc----------------------eecceEeec--Cc-----CceEEEecCCceeEEEecCCcEE
Q 015656 95 TGLNDFGQLGISENIGY----------------------SLEPLRISG--LK-----KEVVQISTGYHHSSAITVDGELY 145 (403)
Q Consensus 95 wG~n~~gqlG~~~~~~~----------------------~~~p~~v~~--~~-----~~i~~i~~G~~~~~~l~~~G~v~ 145 (403)
||.|.+||||.+..... ...|.+++. ++ .+|++|+||..|+++|+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 99999999999854331 457888875 53 59999999999999999999999
Q ss_pred EEEc--CCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccc
Q 015656 146 MWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (403)
Q Consensus 146 ~wG~--n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~ 223 (403)
+||. +.+||||...........|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+..... .
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~-----~ 245 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF-----R 245 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG-----T
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc-----c
Confidence 9998 67899999766655678899998888888999999999999999999999999999999999865321 1
Q ss_pred cccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCC----CccCCeEec--------------
Q 015656 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLIS-------------- 285 (403)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~----~~~~p~~v~-------------- 285 (403)
.....|.++.. .+|++|+||.+|++||+++|+||+||.|.++|||.+... ....|.++.
T Consensus 246 ~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~ 322 (473)
T 3of7_A 246 LKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE 322 (473)
T ss_dssp TTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECS
T ss_pred ccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCC
Confidence 23445666543 379999999999999999999999999999999987654 223444443
Q ss_pred --------CCcEEEeecCCCCCcCCCCC--------------CccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEE
Q 015656 286 --------GGELYTWGSNENGCLGIGSI--------------DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKIL 342 (403)
Q Consensus 286 --------~g~v~~wG~n~~gqlG~g~~--------------~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~ 342 (403)
+|+||+||.|.+||||.+.. .....|.+++. ..+|++|+||.+|++||+ +|+||
T Consensus 323 ~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G~vy 399 (473)
T 3of7_A 323 HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNGIAY 399 (473)
T ss_dssp SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTSCEE
T ss_pred CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCCCcEE
Confidence 89999999999999998742 12234555542 138999999999999999 99999
Q ss_pred EecCCCCCCCcccCCCCCCccccCCC-CCCccccEEEe--cCCCceEEEEecCCCceEEEEee
Q 015656 343 TWGWGGSHGTFSEDGHSSGGQLGHGN-DVDYIHPTIVN--FGENVKALQVSCGFNHTGALLEY 402 (403)
Q Consensus 343 ~wG~~~~~~~~~~~g~N~~gqLG~g~-~~~~~~p~~v~--~~~~~~~~~i~~G~~~t~~l~~~ 402 (403)
+||+ |.+||||+++ ..+...|++|+ .+.+.++++|+||.+||+++.+.
T Consensus 400 ~wG~------------n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 400 SWGF------------GETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp EEEC------------CTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred EeeC------------CCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 9999 7999999999 78889999998 45678999999999999999863
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.6e-63 Score=478.82 Aligned_cols=308 Identities=33% Similarity=0.616 Sum_probs=281.0
Q ss_pred CCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcC-ceEEEecCCceeEEEecCC-cEEEE
Q 015656 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG-ELYMW 147 (403)
Q Consensus 70 ~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G-~v~~w 147 (403)
..+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.. +|++|+||..|+++|+++| +||+|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCc-ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 457999999999999999999999999999999999844 45578888876654 8999999999999999986 99999
Q ss_pred EcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccc
Q 015656 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (403)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 227 (403)
|.|.+||||.+.... ...|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. ....
T Consensus 94 G~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~---------~~~~ 162 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSD--LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT---------EDSL 162 (406)
T ss_dssp ECCGGGTTCSSSCCC--EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---------CCEE
T ss_pred cCCCCcCCCCCCCCc--cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC---------CCcc
Confidence 999999999988765 56777788888889999999999999999999999999999999999875 5567
Q ss_pred cceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCccCCeEec----------------------
Q 015656 228 TPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS---------------------- 285 (403)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~---------------------- 285 (403)
.|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+...+...|.++.
T Consensus 163 ~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~ 242 (406)
T 4d9s_A 163 VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY 242 (406)
T ss_dssp EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEET
T ss_pred cceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcC
Confidence 8999998888899999999999999999999999999999999998877766666553
Q ss_pred CCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccc
Q 015656 286 GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQL 364 (403)
Q Consensus 286 ~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqL 364 (403)
+|+||+||.|.++|||.++......|.++.. +.+.+|++|+||.+|++||+ +|+||+||+ |.+|||
T Consensus 243 ~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~------------n~~GqL 309 (406)
T 4d9s_A 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGW------------NKFGQV 309 (406)
T ss_dssp TCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTT
T ss_pred CCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeC------------CCCCCC
Confidence 8999999999999999999988999999884 46778999999999999999 999999999 899999
Q ss_pred cCCCCCCccccEEEecCCCceEEEEecCCCceEEEEee
Q 015656 365 GHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 402 (403)
Q Consensus 365 G~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~~~ 402 (403)
|.++..+...|++|+.+...++++|+||.+||++|+++
T Consensus 310 G~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 310 GVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp CSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCC
Confidence 99999999999999988888999999999999999864
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-61 Score=461.02 Aligned_cols=305 Identities=32% Similarity=0.508 Sum_probs=276.4
Q ss_pred ccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCc--eEEEEeCCcceEEEecCCcEEEE
Q 015656 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS--LKALACGGAHTLFLTETGCVYAT 95 (403)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~--i~~i~~G~~~~~~lt~~g~vy~w 95 (403)
.+..+++|.+|+++++ .+++||+||.|.+||||.++..+...|+++..+...+ +++|+||..|+++|+++|+||+|
T Consensus 54 ~i~~i~~G~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEETTEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeCCCeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 3567889999999998 8888999999999999999998999999999887654 47888999999999999999999
Q ss_pred EcCCCCCCCCCCCCCceecceEeecCcC-ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeec
Q 015656 96 GLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (403)
Q Consensus 96 G~n~~gqlG~~~~~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~ 174 (403)
|.|.+||||.+. ......|.+++.+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..+
T Consensus 132 G~n~~GqLG~g~-~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGN-RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSS-CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGG
T ss_pred eCCCCCcCCCCC-CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc--cccceEeccc
Confidence 999999999984 445668888887665 899999999999999999999999999999999988765 5678888888
Q ss_pred CCceEEEEEeCC--CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEE
Q 015656 175 SGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252 (403)
Q Consensus 175 ~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~ 252 (403)
.+.+|++|+||. +|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.+.+|++|+||.+|+++
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---------~~~~~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---------DGCKVPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---------CCEEEEEECGGGTTSCEEEEEEETTEEEE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---------CCccccEEecccCCCcEEEEeCCCCEEEE
Confidence 888999999995 8999999999999999999999999875 45678999998888899999999999999
Q ss_pred EecCCcEEEEeCCCcceecccCCCCccCCeEec----------------------CCcEEEeecCCCCCcCCCCCCcccc
Q 015656 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS----------------------GGELYTWGSNENGCLGIGSIDVLHS 310 (403)
Q Consensus 253 l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~----------------------~g~v~~wG~n~~gqlG~g~~~~~~~ 310 (403)
|+++|+||+||.|.++|||.+.......|.++. +|+||+||.|++||||.++......
T Consensus 280 lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~ 359 (389)
T 3kci_A 280 LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR 359 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEE
T ss_pred EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccC
Confidence 999999999999999999999887777776664 8999999999999999999999999
Q ss_pred ceeeeCCCCCCCEEEEecCCCeEEEEE
Q 015656 311 PERVQGPFSESPVDQVSCGWKHTAAIS 337 (403)
Q Consensus 311 p~~v~~~~~~~~i~~i~~G~~h~~~lt 337 (403)
|++++. +.+.+|++|+||.+|++||+
T Consensus 360 P~~v~~-~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 360 PRLVAA-LQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEECGG-GTTSCCCEEEEETTEEEEEC
T ss_pred cEEecc-cCCCCEEEEEecCCcEEEEe
Confidence 999974 56779999999999999998
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.1e-59 Score=451.03 Aligned_cols=311 Identities=24% Similarity=0.377 Sum_probs=267.0
Q ss_pred cccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCC--CCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEE
Q 015656 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL--ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (403)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 94 (403)
..+..++||..|+++++ ++++||+||.|.+||||.+.. .....|+++.. . .+|++|+||..|+++|+++|+||+
T Consensus 59 ~~i~~va~G~~hs~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEc--CCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEE
Confidence 44678899999999999 888999999999999999875 34667888854 2 379999999999999999999999
Q ss_pred EEc--CCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCc---------
Q 015656 95 TGL--NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--------- 163 (403)
Q Consensus 95 wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~--------- 163 (403)
||. |.+||||.+........|.++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 998 9999999986665566788884 4559999999999999999999999999999999998753211
Q ss_pred ccccCeEEeec-----CCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccC-
Q 015656 164 VIPIPTKVECL-----SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG- 237 (403)
Q Consensus 164 ~~~~p~~~~~~-----~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~- 237 (403)
....|..+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~---------~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT---------ESCFIPQNLTSFKNS 284 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSC---------SCEEEEEECGGGCCT
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCC---------CcccccEEchhccCC
Confidence 12456555542 3468999999999999999999999999999999999875 44578999888776
Q ss_pred -ceEEEEEecCceeEEEecCCcEEEEeCCCcceeccc-CCCCccCCeEec--------------------CCcEEEeecC
Q 015656 238 -VKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ-EGNHARRPSLIS--------------------GGELYTWGSN 295 (403)
Q Consensus 238 -~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~-~~~~~~~p~~v~--------------------~g~v~~wG~n 295 (403)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+ .......|.++. +|+||+||.|
T Consensus 285 ~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 579999999999999999999999999999999998 444555665553 8999999999
Q ss_pred CCCCcCCCCCCccccceeeeCC-CCCCCEEEEecCCCeEEEEE-CCcE
Q 015656 296 ENGCLGIGSIDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS-EGKI 341 (403)
Q Consensus 296 ~~gqlG~g~~~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~lt-~g~v 341 (403)
.+||||.++......|+++..+ +.+.+|++|+||.+|++||+ +|++
T Consensus 365 ~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 365 TNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999998889999999853 45678999999999999999 8864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.2e-59 Score=450.57 Aligned_cols=303 Identities=23% Similarity=0.306 Sum_probs=256.3
Q ss_pred CCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEE
Q 015656 69 EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (403)
Q Consensus 69 ~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG 148 (403)
+..++++|+||..|+++|+++|+||+||.|.+||||.+........|.+++.+. .|++|+||..|+++|+++|+||+||
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~-~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS-SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC-CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 345788999999999999999999999999999999997666677888888665 7999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeC--CCCCCcCCCCCCccccccccccc
Q 015656 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA--GGSGRLGHGQESSILGFLRSTSE 226 (403)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~--n~~gqlG~~~~~~~~~~~~~~~~ 226 (403)
.|.+||||.+.........|.++... .+|++|+||.+|+++|+++|+||+||. |.+||||.+.. ...
T Consensus 101 ~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~---------~~~ 169 (423)
T 3mvd_K 101 CNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID---------GNK 169 (423)
T ss_dssp CCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT---------BCE
T ss_pred CCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC---------CCC
Confidence 99999999998776556778887643 369999999999999999999999999 99999999765 333
Q ss_pred ccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCC-----------CccCCeEe-----------
Q 015656 227 YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN-----------HARRPSLI----------- 284 (403)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~-----------~~~~p~~v----------- 284 (403)
..|.++ +...+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|..+
T Consensus 170 ~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i 247 (423)
T 3mvd_K 170 RTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI 247 (423)
T ss_dssp EEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEE
T ss_pred ceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEE
Confidence 445444 455689999999999999999999999999999999997642 33455554
Q ss_pred ------------cCCcEEEeecCCCCCcCCCCC--CccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCC
Q 015656 285 ------------SGGELYTWGSNENGCLGIGSI--DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGS 349 (403)
Q Consensus 285 ------------~~g~v~~wG~n~~gqlG~g~~--~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~ 349 (403)
.+++||+||.|.++|||.+.. .....|.++. ..+|++|+||.+|++||+ +|+||+||+
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~wG~--- 320 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSVVGR--- 320 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEEEEC---
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC----CCCeEEEEcccCeEEEEeCCCcEEEEEC---
Confidence 389999999999999999644 3445566554 358999999999999999 999999999
Q ss_pred CCCcccCCCCCCccccCCCCCC-ccccEEEecCCCceEEEEecCCCceEEEEee
Q 015656 350 HGTFSEDGHSSGGQLGHGNDVD-YIHPTIVNFGENVKALQVSCGFNHTGALLEY 402 (403)
Q Consensus 350 ~~~~~~~g~N~~gqLG~g~~~~-~~~p~~v~~~~~~~~~~i~~G~~~t~~l~~~ 402 (403)
|.+||||.++..+ ...|++|+.+.+ ++++|+||.+||++|+++
T Consensus 321 ---------n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 321 ---------PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp ---------CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred ---------CCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC
Confidence 7999999998865 568999988877 899999999999999864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-56 Score=439.48 Aligned_cols=310 Identities=23% Similarity=0.360 Sum_probs=260.3
Q ss_pred ccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCC-----------------------ccceeeeCc--c----
Q 015656 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-----------------------RWRPVVCSA--F---- 68 (403)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~---- 68 (403)
.+..++||..|+++++ .+|+||+||.|..||||.+.... ...|++++. +
T Consensus 68 ~i~~va~G~~Ht~alt--~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 68 KIISFAVGGMHTLALD--EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp CEEEEEECSSEEEEEE--TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CEEEEEeCCCeEEEEe--cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 4678899999999999 88899999999999999987654 567888875 5
Q ss_pred CCCceEEEEeCCcceEEEecCCcEEEEEc--CCCCCCCCCC-CCCceecceEeecCcC-ceEEEecCCceeEEEecCCcE
Q 015656 69 EKHSLKALACGGAHTLFLTETGCVYATGL--NDFGQLGISE-NIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGEL 144 (403)
Q Consensus 69 ~~~~i~~i~~G~~~~~~lt~~g~vy~wG~--n~~gqlG~~~-~~~~~~~p~~v~~~~~-~i~~i~~G~~~~~~l~~~G~v 144 (403)
.+.+|++|+||..|+++|+++|+||+||. +..||||... .......|.+++.+.. +|++|+||..|+++|+++|+|
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 36789999999999999999999999998 6889999853 3345678888887664 799999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCc--ccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccc
Q 015656 145 YMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (403)
Q Consensus 145 ~~wG~n~~gqlg~~~~~~~--~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~ 222 (403)
|+||.|.+||||.+..... ....|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~----- 297 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED----- 297 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT-----
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC-----
Confidence 9999999999999865432 1335555432 57999999999999999999999999999999998875211
Q ss_pred ccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCC--------------CccCCeEec---
Q 015656 223 STSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN--------------HARRPSLIS--- 285 (403)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~--------------~~~~p~~v~--- 285 (403)
......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|..+.
T Consensus 298 ~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 377 (473)
T 3of7_A 298 GALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377 (473)
T ss_dssp TCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC
T ss_pred CceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC
Confidence 124567888888888899999999999999999999999999999999976421 112333322
Q ss_pred -----------------CCcEEEeecCCCCCcCCCC-CCccccceeeeCC-CCCCCEEEEecCCCeEEEEE
Q 015656 286 -----------------GGELYTWGSNENGCLGIGS-IDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS 337 (403)
Q Consensus 286 -----------------~g~v~~wG~n~~gqlG~g~-~~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~lt 337 (403)
+|+||+||.|.+||||.++ ......|++|... +.+.+|++|+||..|++++.
T Consensus 378 ~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~ 448 (473)
T 3of7_A 378 KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGG 448 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEE
T ss_pred ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEE
Confidence 8999999999999999998 7888999999853 45668999999999999986
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.6e-51 Score=372.48 Aligned_cols=248 Identities=24% Similarity=0.317 Sum_probs=182.4
Q ss_pred cccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcC
Q 015656 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLN 98 (403)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 98 (403)
+..+++|..|+++++ +++||+||.|.+||||.+ .+ ...+|++|+||..|+++|+ +|+||+||.|
T Consensus 26 i~~ia~G~~h~~~l~---~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n 89 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK---GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89 (282)
T ss_dssp CCEEEECSSEEEEEE---TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CcEEEeCCCeEEEEE---CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence 456678888888773 677888888888888742 11 1235888888888888885 8888888888
Q ss_pred CCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCce
Q 015656 99 DFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIF 178 (403)
Q Consensus 99 ~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~ 178 (403)
.+||||.+ .++ ..+|++|+||..|+++|+ +|+||+||.|.+|||+.... ...+
T Consensus 90 ~~Gqlg~P---------~~~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~--------------~~~~ 142 (282)
T 3qhy_B 90 EDGQTTVP---------AEA---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE--------------AQSG 142 (282)
T ss_dssp TTSTTCCC---------GGG---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG--------------GGSS
T ss_pred CCCCCCCC---------ccc---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc--------------CCCC
Confidence 88888752 211 237888888888888888 88888888888888873211 1234
Q ss_pred EEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCc
Q 015656 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258 (403)
Q Consensus 179 i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~ 258 (403)
|++|+||.+|+++|+ +|+||+||.|.+|||+.. .++ ..+|++|+||.+|+++| ++|+
T Consensus 143 i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-----------------~~~----~~~v~~i~~G~~hs~al-~~G~ 199 (282)
T 3qhy_B 143 VTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-----------------AEA----QSGVDDVAGGIFHSLAL-KDGK 199 (282)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC-----------------GGG----GSSEEEEEECSSEEEEE-ETTE
T ss_pred eEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc-----------------eec----CCCeEEEEecCCEEEEE-ECCe
Confidence 788888888888888 688888888888887731 111 12588888888888888 7877
Q ss_pred EEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEEC
Q 015656 259 VYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISE 338 (403)
Q Consensus 259 v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt~ 338 (403)
||+||.|.++|||.+ ... ..+|++|+||.+|++|+++
T Consensus 200 v~~wG~n~~gqlg~p--------------------------------------~~~-----~~~v~~i~~G~~h~~al~~ 236 (282)
T 3qhy_B 200 VIAWGDNRYKQTTVP--------------------------------------TEA-----LSGVSAIASGEWYSLALKN 236 (282)
T ss_dssp EEEEECCTTSTTCCC--------------------------------------GGG-----GSSCCEEEECSSCEEEEET
T ss_pred EEEEECCCCCCCCCC--------------------------------------ccc-----CCCceEEEcCCCEEEEEEC
Confidence 777777666665421 111 1379999999999999999
Q ss_pred CcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEEEEecCCCceEEEEeeC
Q 015656 339 GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV 403 (403)
Q Consensus 339 g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~~~~ 403 (403)
|+||+||+ |.++|++.. + .+++|+||..|+++|++++
T Consensus 237 g~v~~wG~------------n~~gq~~v~--------------~--~v~~iaaG~~h~~al~~~~ 273 (282)
T 3qhy_B 237 GKVIAWGS------------SRTAPSSVQ--------------S--GVSSIEAGPNAAYALKGGS 273 (282)
T ss_dssp TEEEEEST------------TCCCCGGGS--------------S--CEEEEEECSSCEEEEEC--
T ss_pred CEEEEecC------------CCCccccCC--------------C--CcEEEEECcCeEEEEecCC
Confidence 99999999 788998762 1 4788999999999999763
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=8.7e-47 Score=344.75 Aligned_cols=233 Identities=28% Similarity=0.375 Sum_probs=190.0
Q ss_pred eEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEe
Q 015656 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI 118 (403)
Q Consensus 39 ~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v 118 (403)
+||+||+|...++. |.++..+ .+|++|+||..|+++|+ +|+||+||.|.+||||.+ ..
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~--~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p---------~~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQ--SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP---------AA- 60 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGS--SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC---------GG-
T ss_pred EEEEeCCCCCcCcc---------cCCcccc--CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC---------cc-
Confidence 59999999755543 2223322 36999999999999998 999999999999999953 11
Q ss_pred ecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcE
Q 015656 119 SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (403)
Q Consensus 119 ~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v 198 (403)
...+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~----------P~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV----------PAEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------CGGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------Cccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 2248999999999999996 99999999999999995 2222 136999999999999999 9999
Q ss_pred EEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCc
Q 015656 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (403)
Q Consensus 199 ~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~ 278 (403)
|+||.|.+||||.... . ..+|++|+||.+|+++|+ +|+||+||.|.++||+.
T Consensus 123 ~~wG~n~~gqlg~~~~-------------------~--~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~------ 174 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPAE-------------------A--QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV------ 174 (282)
T ss_dssp EEEECCTTSTTSCCGG-------------------G--GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC------
T ss_pred EEecCCCCCcCCCCcc-------------------C--CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC------
Confidence 9999999999984211 1 126999999999999999 89888888887776642
Q ss_pred cCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEECCcEEEecCCCCCCCcccCCC
Q 015656 279 RRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGH 358 (403)
Q Consensus 279 ~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt~g~v~~wG~~~~~~~~~~~g~ 358 (403)
|..+ ..+|++|+||.+|++||++|+||+||.
T Consensus 175 --------------------------------p~~~-----~~~v~~i~~G~~hs~al~~G~v~~wG~------------ 205 (282)
T 3qhy_B 175 --------------------------------PAEA-----QSGVDDVAGGIFHSLALKDGKVIAWGD------------ 205 (282)
T ss_dssp --------------------------------CGGG-----GSSEEEEEECSSEEEEEETTEEEEEEC------------
T ss_pred --------------------------------ceec-----CCCeEEEEecCCEEEEEECCeEEEEEC------------
Confidence 2222 258999999999999999999999999
Q ss_pred CCCccccCCCCCCccccEEEecCCCceEEEEecCCCceEEEE
Q 015656 359 SSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALL 400 (403)
Q Consensus 359 N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~ 400 (403)
|.+||||.+.. .+ .++++|+||..|+++|+
T Consensus 206 n~~gqlg~p~~----------~~--~~v~~i~~G~~h~~al~ 235 (282)
T 3qhy_B 206 NRYKQTTVPTE----------AL--SGVSAIASGEWYSLALK 235 (282)
T ss_dssp CTTSTTCCCGG----------GG--SSCCEEEECSSCEEEEE
T ss_pred CCCCCCCCCcc----------cC--CCceEEEcCCCEEEEEE
Confidence 79999996532 11 25788999999999998
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.89 E-value=0.3 Score=45.99 Aligned_cols=181 Identities=9% Similarity=0.028 Sum_probs=103.1
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 107 (403)
...+++...++.|..|-... ++ ....+. .....|..++......+.-..||.|..|-....
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~-~~----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~------- 203 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNT-LE----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG------- 203 (435)
T ss_dssp SSEEEEEESSSCEEEEESSS-CC----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-------
T ss_pred CCEEEEEeCCCeEEEEeCCC-Ce----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-------
Confidence 34555556777788885332 11 111121 123468888876666666688999999964321
Q ss_pred CCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC
Q 015656 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (403)
Q Consensus 108 ~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~ 187 (403)
.....+......|..++......+.-..+|.|..|-...... ..+..........|..++....
T Consensus 204 -----~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~ 267 (435)
T 1p22_A 204 -----EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDK 267 (435)
T ss_dssp -----CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEEETT
T ss_pred -----cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEeCCC
Confidence 011222223447888888777778888999999996432110 0111111112345777777677
Q ss_pred ceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeC
Q 015656 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGD 264 (403)
Q Consensus 188 ~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~ 264 (403)
..+.-..+|.|..|-.... + ....+.. ....|..++......++-..+|.|..|-.
T Consensus 268 ~l~s~~~dg~i~vwd~~~~-~-------------------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTC-E-------------------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp EEEEEETTSEEEEEETTTC-C-------------------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCeEEEEECCcC-c-------------------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 7777788999999954221 0 0011111 11246666665566666677777777744
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.56 E-value=0.53 Score=44.36 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=136.9
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
...++++...++.|..|-....- ....+. .....|..++......+.-..||.|..|-....
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~------ 189 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGK-----------CLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG------ 189 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCC-----------EEEECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT------
T ss_pred cCCEEEEEECCCcEEEEECCCCc-----------EEEEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC------
Confidence 44566666788888888754211 111111 123357777766666667788999999954321
Q ss_pred CCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~ 186 (403)
.....+......|..++......+.-..||.|..|-.... .+..........|..++...
T Consensus 190 ------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~--------------~~~~~~~~~~~~v~~~~~~~ 249 (445)
T 2ovr_B 190 ------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG--------------QCLHVLMGHVAAVRCVQYDG 249 (445)
T ss_dssp ------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC--------------CEEEEEECCSSCEEEEEECS
T ss_pred ------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC--------------cEEEEEcCCcccEEEEEECC
Confidence 1112233333467777776777777888999999964321 01111111234577777766
Q ss_pred CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCC
Q 015656 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 187 ~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 266 (403)
...++-..+|.|..|-.... .....+.. ....|..++....+.+.-..+|.|..|-...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETE--------------------TCLHTLQG-HTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGT--------------------EEEEEECC-CSSCEEEEEECSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCC--------------------cEeEEecC-CCCceEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 77777788999999943210 00111111 1225777777667777778899999997544
Q ss_pred cceecccCCCCccCCeEe--c---------CCcEEEeecCCCCCcCCCCCCccccceeeeCC-CCCCCEEEEecCCCeEE
Q 015656 267 VDKMLFQEGNHARRPSLI--S---------GGELYTWGSNENGCLGIGSIDVLHSPERVQGP-FSESPVDQVSCGWKHTA 334 (403)
Q Consensus 267 ~gqlg~~~~~~~~~p~~v--~---------~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~ 334 (403)
...+..-.. .......+ . ++.+..|-.... .....+..+ .....|..++....+.+
T Consensus 309 ~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~l~ 376 (445)
T 2ovr_B 309 GNCIHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTG-----------QCLQTLQGPNKHQSAVTCLQFNKNFVI 376 (445)
T ss_dssp CCEEEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTC-----------CEEEEECSTTSCSSCEEEEEECSSEEE
T ss_pred CCEEEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCC-----------cEEEEEccCCCCCCCEEEEEECCCEEE
Confidence 332221110 00000001 0 555555532211 111112111 12356878887666666
Q ss_pred EEE-CCcEEEecC
Q 015656 335 AIS-EGKILTWGW 346 (403)
Q Consensus 335 ~lt-~g~v~~wG~ 346 (403)
+-. ||.|..|-.
T Consensus 377 s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 377 TSSDDGTVKLWDL 389 (445)
T ss_dssp EEETTSEEEEEET
T ss_pred EEeCCCeEEEEEC
Confidence 666 999999975
No 15
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.35 E-value=0.0084 Score=51.28 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=59.6
Q ss_pred CceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcC
Q 015656 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (403)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n 150 (403)
..|..|+--..|..++--+++++.+|+++.||+-... ...+..++.+|.++++-+..-..|-.||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------tagPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------GGCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------CcchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 4578888889999999999999999999999976541 223788999999999999999999999986
Q ss_pred CCCCC
Q 015656 151 SNGQL 155 (403)
Q Consensus 151 ~~gql 155 (403)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 54433
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.77 E-value=1.3 Score=41.50 Aligned_cols=181 Identities=7% Similarity=0.004 Sum_probs=103.2
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
...++++...++.|..|-.... + ....+. .....|..++......+.-..||.|..|-.....
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~-~----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~----- 244 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTG-E----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT----- 244 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSC-C----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----
T ss_pred CCCEEEEEcCCCeEEEEECCCC-c----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----
Confidence 3445555567777777754321 1 111111 1234688888877777777899999999643211
Q ss_pred CCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~ 186 (403)
.......+......|..++......+.-..||.|..|-..... ....+. .....|..++...
T Consensus 245 ----~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~-~~~~~v~~~~~~~ 306 (435)
T 1p22_A 245 ----DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-------------FVRTLN-GHKRGIACLQYRD 306 (435)
T ss_dssp ----CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-------------EEEEEE-CCSSCEEEEEEET
T ss_pred ----CceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-------------EEEEEc-CCCCcEEEEEeCC
Confidence 0111122222334777777766777777889999999643210 011111 1223567777766
Q ss_pred CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEe
Q 015656 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFG 263 (403)
Q Consensus 187 ~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG 263 (403)
...+.-..+|.|..|-.... + ....+.. ....|..++....+.+.-..+|.|..|-
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~-~-------------------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECG-A-------------------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp TEEEEEETTSCEEEEETTTC-C-------------------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-C-------------------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEE
Confidence 77777788999999954321 0 0011111 1224667776666666667788888884
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.59 E-value=0.037 Score=47.37 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=59.5
Q ss_pred ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeC
Q 015656 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 124 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~ 203 (403)
.|.+|+--..|.+++--+++++.+|+++.||+-..... .+..++.+|.++++-+..-..|-.||+
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta---------------gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA---------------GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG---------------CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc---------------chHHhHhccCCeEEEEeceeeEEEecC
Confidence 67788888999999999999999999999998754332 257889999999999999999999998
Q ss_pred CCCCCc
Q 015656 204 GGSGRL 209 (403)
Q Consensus 204 n~~gql 209 (403)
.-...|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 655444
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.42 E-value=1.8 Score=40.64 Aligned_cols=178 Identities=8% Similarity=-0.050 Sum_probs=104.0
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 107 (403)
..++++...++.|..|-.... .....+. .....|..++......+.-..||.|..|-.....
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------ 230 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETG-----------ECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------ 230 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------
T ss_pred CCEEEEEeCCCeEEEEECCcC-----------cEEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------
Confidence 345556667777888854321 1111111 1234577787777777777889999999643210
Q ss_pred CCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeec--CCceEEEEEeC
Q 015656 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SGIFTKQAALG 185 (403)
Q Consensus 108 ~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~--~~~~i~~i~~G 185 (403)
....+......|..++......+.-..+|.|..|-... ...+..+ ....|..++..
T Consensus 231 ------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~ 288 (445)
T 2ovr_B 231 ------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET----------------ETCLHTLQGHTNRVYSLQFD 288 (445)
T ss_dssp ------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG----------------TEEEEEECCCSSCEEEEEEC
T ss_pred ------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCC----------------CcEeEEecCCCCceEEEEEC
Confidence 11222223346777777666777778899999996421 1111111 23457777776
Q ss_pred CCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCC
Q 015656 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDR 265 (403)
Q Consensus 186 ~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n 265 (403)
..+.+.-..+|.|..|-...... ...+.. ....+..++......++-..+|.|..|-..
T Consensus 289 ~~~l~~~~~d~~i~i~d~~~~~~--------------------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 289 GIHVVSGSLDTSIRVWDVETGNC--------------------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp SSEEEEEETTSCEEEEETTTCCE--------------------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCCE--------------------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 67777778899999995432100 001111 112455566666677777889999999754
Q ss_pred C
Q 015656 266 A 266 (403)
Q Consensus 266 ~ 266 (403)
.
T Consensus 348 ~ 348 (445)
T 2ovr_B 348 T 348 (445)
T ss_dssp T
T ss_pred C
Confidence 4
No 19
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.12 E-value=4 Score=35.47 Aligned_cols=105 Identities=7% Similarity=0.040 Sum_probs=59.1
Q ss_pred CCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEec---CCceeEEEecCCcEEE
Q 015656 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYM 146 (403)
Q Consensus 70 ~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~---G~~~~~~l~~~G~v~~ 146 (403)
...|..++.-....+.-..+|.|..|-. + .....+......+..+.. .....+.-..+|.|..
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 3467888876666777788999999941 0 111222222335555443 4566667778899999
Q ss_pred EEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC-ceEEEeCCCcEEEeeC
Q 015656 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 147 wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~-~~~~lt~~G~v~~~G~ 203 (403)
|-.. .....+.......+..++...+ ..++...+|.|+.|-.
T Consensus 170 ~d~~---------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 170 WQND---------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDM 212 (313)
T ss_dssp EETT---------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EecC---------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEEC
Confidence 9511 0111111112234555544322 2556678899999854
No 20
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.48 E-value=6.4 Score=36.15 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=76.2
Q ss_pred EeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCC
Q 015656 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISEN 108 (403)
Q Consensus 31 ~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 108 (403)
+++...++.|+.|-... |+ ....+.......|..|+... .+.++-..+|.|..|-....
T Consensus 106 l~~~~~d~~v~lw~~~~-~~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------- 166 (401)
T 4aez_A 106 VVAVALERNVYVWNADS-GS----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------- 166 (401)
T ss_dssp EEEEEETTEEEEEETTT-CC----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------
T ss_pred EEEEECCCeEEEeeCCC-Cc----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--------
Confidence 44445788899997543 11 11122221344577776543 34445567899999964321
Q ss_pred CCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC-
Q 015656 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE- 187 (403)
Q Consensus 109 ~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~- 187 (403)
.....+......|..++......+.-..+|.|+.|--...++ ....+. .....|..++...+
T Consensus 167 ----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~-~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 167 ----TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH------------QIGTLQ-GHSSEVCGLAWRSDG 229 (401)
T ss_dssp ----CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC------------EEEEEE-CCSSCEEEEEECTTS
T ss_pred ----eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc------------eeeEEc-CCCCCeeEEEEcCCC
Confidence 112223333447778877666777778899999996532110 111111 12335666666433
Q ss_pred -ceEEEeCCCcEEEeeC
Q 015656 188 -QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 188 -~~~~lt~~G~v~~~G~ 203 (403)
..+.-..+|.|+.|-.
T Consensus 230 ~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDA 246 (401)
T ss_dssp SEEEEEETTSCEEEEET
T ss_pred CEEEEEeCCCeEEEccC
Confidence 4455567899999954
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.16 E-value=5.7 Score=34.86 Aligned_cols=190 Identities=10% Similarity=-0.005 Sum_probs=91.0
Q ss_pred ccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc-ceEEEecCCcEEEEEcCCCCCCCCCCCCCceec
Q 015656 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLE 114 (403)
Q Consensus 36 ~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~ 114 (403)
.++.+++++......+...... ...+.... .....|..++.... ..++...+|.|..|-...... .....
T Consensus 19 ~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~-------~~~~~ 89 (337)
T 1gxr_A 19 ADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN-------KSPVS 89 (337)
T ss_dssp SSSCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC-------CSCSE
T ss_pred CCCCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc-------eeeee
Confidence 6777888776554433322211 11121111 12345666665433 334444588899986543211 00011
Q ss_pred ceEeecCcCceEEEecCC--ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC--CceE
Q 015656 115 PLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSV 190 (403)
Q Consensus 115 p~~v~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~ 190 (403)
..........|..++... ...+.-..+|.|+.|-.... ..............|..++... ...+
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceEEEEECCCCCEEE
Confidence 111112233566665543 34455567899999964321 0001111111233466666543 3455
Q ss_pred EEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEec--CceeEEEecCCcEEEEeCCCc
Q 015656 191 AVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAV 267 (403)
Q Consensus 191 ~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~ 267 (403)
+-..+|.|+.|-.... .....+.. ....|..++.. ....++...+|.|+.|-....
T Consensus 158 ~~~~dg~v~~~d~~~~--------------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQ--------------------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEETTSCEEEEETTTT--------------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEeCCCcEEEEeCCCC--------------------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 5667899999854211 00111111 12246566553 334555667899999965543
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=91.69 E-value=6.5 Score=34.50 Aligned_cols=106 Identities=10% Similarity=-0.048 Sum_probs=56.1
Q ss_pred CceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC--ceeEEEecCCcEEE
Q 015656 71 HSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYM 146 (403)
Q Consensus 71 ~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~G~v~~ 146 (403)
..|..++... .+.+.-..+|.|+.|-.... .....+......|..++... ...+....+|.|+.
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 3466666543 34455567899999964321 11222232334666666543 35555667899999
Q ss_pred EEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC--CceEEEeCCCcEEEeeC
Q 015656 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 147 wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~ 203 (403)
|-..... ....+. ....+..++... ...++-..+|.|+.|-.
T Consensus 210 ~d~~~~~-------------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 210 WDLREGR-------------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EETTTTE-------------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EECCCCc-------------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 9643210 001111 122455555533 34455567888888843
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.50 E-value=7.8 Score=35.07 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=54.4
Q ss_pred CceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC---ceeEEEecCCcEE
Q 015656 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELY 145 (403)
Q Consensus 71 ~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~---~~~~~l~~~G~v~ 145 (403)
..|..|+.... +.+.-..||.|..|-.... .....+..-...|..|+... ...+.-..||.|.
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 34777765543 3333457888988853221 11122222234677776532 3445566789999
Q ss_pred EEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC--CceE-EEeCCCcEEEee
Q 015656 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSV-AVTGGGKVLSWG 202 (403)
Q Consensus 146 ~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~-~lt~~G~v~~~G 202 (403)
.|-......+ ...........+..++... .+.+ .-..++.|+.|-
T Consensus 208 ~wd~~~~~~~------------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 208 LWDTRKPKPA------------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp ECCTTSSSCB------------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred EEECCCCcee------------eeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence 9943211000 0000011223466666542 2333 346788999884
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.50 E-value=16 Score=36.81 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred CcceEEEec-CCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEE----ecCCceeEEEecCCcEEEEEcCCCCC
Q 015656 80 GAHTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI----STGYHHSSAITVDGELYMWGKNSNGQ 154 (403)
Q Consensus 80 ~~~~~~lt~-~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i----~~G~~~~~~l~~~G~v~~wG~n~~gq 154 (403)
..|++++.. +|+||++|-.....--. +.... .......-..+ ..-..|++++..+++||++|-.....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~--~dv~~-----yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~ 513 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGL--SDNWI-----FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP 513 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBC--CCCEE-----EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcc--ccEEE-----EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC
Confidence 468887776 99999998322110000 01111 11011111111 12346777775689999998532211
Q ss_pred CCCCCCCCcccccCeEEeecCCceEEEEEe-------CCCce-EEEeCC-CcEEEeeC
Q 015656 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAAL-------GFEQS-VAVTGG-GKVLSWGA 203 (403)
Q Consensus 155 lg~~~~~~~~~~~p~~~~~~~~~~i~~i~~-------G~~~~-~~lt~~-G~v~~~G~ 203 (403)
-..+..+.......+.. -..|+ +++..+ +++|.+|-
T Consensus 514 -------------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 514 -------------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp -------------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred -------------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 11111222233444432 23566 555655 89999985
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=89.57 E-value=11 Score=33.49 Aligned_cols=192 Identities=8% Similarity=-0.058 Sum_probs=89.8
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGI 105 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~ 105 (403)
..++++...++.|+.|-.... .....+.. ....|..++.. ..+.+....||.|+.|-.....
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---- 107 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ---- 107 (369)
T ss_dssp SCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----
T ss_pred CCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Confidence 345555567778888853321 11112221 23357777665 3344556678999999543210
Q ss_pred CCCCCceecceEeecCcCceEEEecCC--ceeEEEecC-----CcEEEEEcCCCCCCCCCCCCCcccccCeEEee-cCCc
Q 015656 106 SENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVD-----GELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC-LSGI 177 (403)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~-----G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~-~~~~ 177 (403)
....+. ....|..++... ...++...+ |.|+.|-.........-.... ......+.. ....
T Consensus 108 --------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 108 --------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS--EEPIHKIITHEGLD 176 (369)
T ss_dssp --------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC--SSCSEEEECCTTCC
T ss_pred --------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc--cceeeeccCCcCcc
Confidence 111111 333555554433 344444555 888888654322111000000 000111111 1111
Q ss_pred eEEEEEeCC--CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEec--CceeEEE
Q 015656 178 FTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACI 253 (403)
Q Consensus 178 ~i~~i~~G~--~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~l 253 (403)
.+..++... ...++...+|.|+.|-....+ .+..........|..++.. ....++.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--------------------EYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTT--------------------EEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--------------------EeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 455555443 345555788899998542211 1111111112246666553 3344555
Q ss_pred ecCCcEEEEeCCC
Q 015656 254 DENGRVYIFGDRA 266 (403)
Q Consensus 254 ~~~G~v~~wG~n~ 266 (403)
..+|.|+.|-...
T Consensus 237 ~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 237 SRDTNSFLVDVST 249 (369)
T ss_dssp ETTSEEEEEETTT
T ss_pred cCCceEEEEECCC
Confidence 6788899986544
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.42 E-value=14 Score=34.49 Aligned_cols=193 Identities=9% Similarity=0.002 Sum_probs=99.7
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC----CcceEEEecCCcEEEEEcCCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGI 105 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~g~vy~wG~n~~gqlG~ 105 (403)
.+++...|+.|..|-.... .....+. .....|..++.- ....+.-..||.|..|-.........
T Consensus 175 ~l~s~s~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKG-----------CCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--
T ss_pred EEEEEeCCCCEEEEECCCC-----------cEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc
Confidence 4555556777777754321 1111111 123346655543 24455667899999997554322211
Q ss_pred CCCCCc--------eecc---eEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeec
Q 015656 106 SENIGY--------SLEP---LRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (403)
Q Consensus 106 ~~~~~~--------~~~p---~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~ 174 (403)
...... ...| .........+..++.-....+.-..+|.|..|-.... .+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~--------------~~~~~~~~ 308 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--------------KCLYILSG 308 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECC
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEecC
Confidence 000000 0001 1112222367777766677777788999999964321 11111111
Q ss_pred CCceEEEEEeCC--CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCceeEE
Q 015656 175 SGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252 (403)
Q Consensus 175 ~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~ 252 (403)
....|..++... ...+.-..||.|+.|-... ++ ....+.. ....|..++....+.+.
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~-------------------~~~~~~~-h~~~v~~~~~~~~~l~s 367 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GE-------------------LMYTLQG-HTALVGLLRLSDKFLVS 367 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TE-------------------EEEEECC-CSSCEEEEEECSSEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc-------------------EEEEEeC-CCCcEEEEEEcCCEEEE
Confidence 223466666543 3455667889999985321 10 0011111 12257777777777788
Q ss_pred EecCCcEEEEeCCCcce
Q 015656 253 IDENGRVYIFGDRAVDK 269 (403)
Q Consensus 253 l~~~G~v~~wG~n~~gq 269 (403)
-..+|.|..|-.....+
T Consensus 368 ~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSR 384 (464)
T ss_dssp EETTSEEEEEETTTCCE
T ss_pred EeCCCcEEEEECCCCce
Confidence 88999999997665443
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.41 E-value=13 Score=32.93 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=60.5
Q ss_pred CceEEEEeCCc------ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC---ceeEEEecC
Q 015656 71 HSLKALACGGA------HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVD 141 (403)
Q Consensus 71 ~~i~~i~~G~~------~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~---~~~~~l~~~ 141 (403)
..|..++.... ..+.-..+|.|..|-.... .....+......|..++... ...+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 44666665433 3445568899999953221 11222333344777777643 455556778
Q ss_pred CcEEEEEcCCCCCCCCCCCCCcccccCeEEe--ecCCceEEEEEeCC--CceEEEeCCCcEEEeeCC
Q 015656 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAG 204 (403)
Q Consensus 142 G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~n 204 (403)
|.|+.|-..... ....+. ......|..++... ...+....+|.|+.|-..
T Consensus 138 g~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 138 HALRLWNIQTDT-------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp SCEEEEETTTTE-------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred CeEEEEEeecCe-------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999999643210 111110 11234577777653 345555678999999543
No 28
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.72 E-value=25 Score=35.37 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=11.8
Q ss_pred ceeEEEecCCcEEEEeCC
Q 015656 248 LHSACIDENGRVYIFGDR 265 (403)
Q Consensus 248 ~~~~~l~~~G~v~~wG~n 265 (403)
.|++++..+|+||++|-.
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 477888788899999864
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=85.75 E-value=20 Score=32.27 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=49.9
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISE 107 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~ 107 (403)
.+++...++.|..|=......+ ........-....|..|+.... +.+.-..||.|..|-....
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------- 159 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETL--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------- 159 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred eEEEEECCCEEEEEeccCCCce--------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------
Confidence 3445567888888854431111 1111111111235777765433 3333457888888853211
Q ss_pred CCCceecceEeecCcCceEEEecCCc---eeEEEecCCcEEEEEc
Q 015656 108 NIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGK 149 (403)
Q Consensus 108 ~~~~~~~p~~v~~~~~~i~~i~~G~~---~~~~l~~~G~v~~wG~ 149 (403)
..-..+..-...|..++.... ..+.-..||.|..|-.
T Consensus 160 -----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 160 -----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp -----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred -----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 011122223346777765433 2233457899999954
No 30
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=84.13 E-value=21 Score=31.25 Aligned_cols=149 Identities=9% Similarity=-0.109 Sum_probs=76.6
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCc-cCCCceEEEEeC-CcceEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSA-FEKHSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISE 107 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 107 (403)
++++...++.|+.|-....++ +..+.. .....|..++.. ....+....||.|+.|-...... .
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~- 135 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---G- 135 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---B-
T ss_pred EEEEEcCCCeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---c-
Confidence 555555777788875411121 122221 023356666654 45555667889999995321000 0
Q ss_pred CCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC-
Q 015656 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF- 186 (403)
Q Consensus 108 ~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~- 186 (403)
.......+.........|..++...+..++...+|.|+.|-....+. .............+..++...
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED-----------DNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT-----------CCCEEEECSCSSCEEEEEECSG
T ss_pred cccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc-----------ccceeeecCCCCceeEEEECCC
Confidence 00000111111113346777777777777778899999997543111 011111111233566666654
Q ss_pred --CceEEEeCCCcEEEeeCC
Q 015656 187 --EQSVAVTGGGKVLSWGAG 204 (403)
Q Consensus 187 --~~~~~lt~~G~v~~~G~n 204 (403)
...++-..+|.|..|-..
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp GGCEEEEEETTSEEEEEECC
T ss_pred CCCEEEEEecCCcEEEEEEc
Confidence 445556788988888543
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=83.20 E-value=29 Score=32.15 Aligned_cols=235 Identities=11% Similarity=0.063 Sum_probs=113.3
Q ss_pred eEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc-eeEEEecCCcEEEEEcCC
Q 015656 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITVDGELYMWGKNS 151 (403)
Q Consensus 73 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~ 151 (403)
+..++......+.-..||.|..|-.... .....+......|..++...+ ..+.-..||.|..|--..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence 4455555566666688999999964221 111222333447777775433 555567889999996432
Q ss_pred CCCCCCCCCCCcccccCeEEeecCCceEEEEEeC----CCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccc
Q 015656 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (403)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G----~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 227 (403)
.. ....+. .....|..++.- ....+.-..+|.|..|-.........................
T Consensus 193 ~~-------------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 193 GC-------------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp TE-------------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred Cc-------------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 10 111111 112345555443 244566678999999965433221111000000000000001
Q ss_pred cceeeccc--cCceEEEEEecCceeEEEecCCcEEEEeCCCcceeccc--CCCCccC-------CeEec---CCcEEEee
Q 015656 228 TPRLIKEL--EGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ--EGNHARR-------PSLIS---GGELYTWG 293 (403)
Q Consensus 228 ~p~~i~~~--~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~--~~~~~~~-------p~~v~---~g~v~~wG 293 (403)
.|..+..+ ....+..++.-....++-..+|.|..|-......+..- ....... ...+. ++.++.|-
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 11111111 12256677666777777888999999976543322211 1110000 01111 45555553
Q ss_pred cCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecC
Q 015656 294 SNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 346 (403)
Q Consensus 294 ~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~ 346 (403)
.... .....+. .....|..++....+.+.-. ||.|..|=.
T Consensus 339 ~~~~-----------~~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 339 LENG-----------ELMYTLQ--GHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp TTTT-----------EEEEEEC--CCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CCCC-----------cEEEEEe--CCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 2210 0111111 13356777777666666666 899999965
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.96 E-value=29 Score=31.28 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=30.9
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCC--cceEEEecCCcEEEEEcC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLN 98 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n 98 (403)
.++++...++.|+.|- ..++ ....+. .....|..++... .+.+....+|.|+.|-..
T Consensus 121 ~~l~~~~~dg~i~i~~--~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN--KTGA----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp SEEEEEETTSCEEEEE--TTSC----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CEEEEEeCCCeEEEEe--CCCC----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 4555555677777774 1111 111121 1234577776643 334556678999999653
No 33
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.27 E-value=28 Score=30.63 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=82.9
Q ss_pred CCCceEEEEeCCc-----ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC--ceeEEEecC
Q 015656 69 EKHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVD 141 (403)
Q Consensus 69 ~~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~ 141 (403)
....|..|+.... ..+.-..||.|..|-....++ .....+......|..++... ...+.-..|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 3457888887765 334446789999996543111 11123333344677766543 355566778
Q ss_pred CcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe--CCC--ceEEEeCCCcEEEeeCCCCCCcCCCCCCcc
Q 015656 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSI 217 (403)
Q Consensus 142 G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--G~~--~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~ 217 (403)
|.|..|-.... .+..+.. ....|..++. ..+ ..+.-..+|.|+.|=....
T Consensus 108 g~v~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------- 161 (368)
T 3mmy_A 108 KTAKMWDLSSN--------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----------- 161 (368)
T ss_dssp SEEEEEETTTT--------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------
T ss_pred CcEEEEEcCCC--------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------
Confidence 99999965321 1111111 2335677765 333 3445567899999943211
Q ss_pred cccccccccccceeeccccCceEEEEEecCceeEEEecCCcEEEEeCCC
Q 015656 218 LGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 218 ~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 266 (403)
.+........ .+..+..-....++.+.++.+..|-...
T Consensus 162 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 162 ----------NPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ----------SCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred ----------cEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 1111101111 3444555556677778888888886544
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=81.16 E-value=30 Score=31.01 Aligned_cols=109 Identities=7% Similarity=0.057 Sum_probs=56.9
Q ss_pred CCceEEEEeCCc-ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeec---C---cCceEEEecC--CceeEEEec
Q 015656 70 KHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG---L---KKEVVQISTG--YHHSSAITV 140 (403)
Q Consensus 70 ~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~---~---~~~i~~i~~G--~~~~~~l~~ 140 (403)
...|..++.... ..++-..+|.|+.|-.... .....+.. . ...|..++.. ..+.++-..
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTL------------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTT------------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCC------------ceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 345666665543 3334456888999864321 11122222 1 3466666653 344455556
Q ss_pred C---CcEEEEEcCCCCCCCCCCCCCcccccCeEEee------------cCCceEEEEEeCC--CceEEEeCCCcEEEeeC
Q 015656 141 D---GELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC------------LSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 141 ~---G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~------------~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~ 203 (403)
+ |.|+.|-...... ...+.. .....|..++... ...+.-..+|.|+.|-.
T Consensus 254 d~~~g~i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 254 SNSFGCITLYETEFGER-------------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ETTEEEEEEEETTTCCE-------------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCCceEEEEECCCCcc-------------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 7 8899996532110 011111 0133566776653 34555567899999954
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=79.71 E-value=32 Score=30.40 Aligned_cols=141 Identities=10% Similarity=0.016 Sum_probs=75.0
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCcc--CCCceEEEEeC----CcceEEEecCCcEEEEEcCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACG----GAHTLFLTETGCVYATGLNDFG 101 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G----~~~~~~lt~~g~vy~wG~n~~g 101 (403)
..++++...++.|..|=.... ....+..+ ....|..++.. ....+.-..||.|..|-....
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~- 89 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG- 89 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-
T ss_pred CCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-
Confidence 445556567788888865310 11111111 23457777764 345555678899999954321
Q ss_pred CCCCCCCCCceecceEeecCcCceEEEecCC----ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCc
Q 015656 102 QLGISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (403)
Q Consensus 102 qlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~----~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~ 177 (403)
.......+......|..++... ...+....+|.|..|-...... ..+..+. ....
T Consensus 90 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------~~~~~~~-~~~~ 148 (379)
T 3jrp_A 90 ---------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIID-AHAI 148 (379)
T ss_dssp ---------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----------CCEEEEE-CCTT
T ss_pred ---------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----------eeeEEec-CCCC
Confidence 0011122222334677776553 3456667889999996543211 0111111 1223
Q ss_pred eEEEEEeCC---------------CceEEEeCCCcEEEee
Q 015656 178 FTKQAALGF---------------EQSVAVTGGGKVLSWG 202 (403)
Q Consensus 178 ~i~~i~~G~---------------~~~~~lt~~G~v~~~G 202 (403)
.|..++... ...++-..+|.|+.|-
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 466666543 4455567889999984
No 36
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.62 E-value=34 Score=30.69 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=82.3
Q ss_pred EeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC-----ceeEEEecCCcEEEEEcCC
Q 015656 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNS 151 (403)
Q Consensus 77 ~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~-----~~~~~l~~~G~v~~wG~n~ 151 (403)
+....+.+++|+.|++|..-...--..+..........-..+. ..++|+.+.+.. ...+++|++|.+.-.--..
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 3445567789999999988654433222111000000001111 234777776553 4678899999887665433
Q ss_pred CCCCCCCCCCCcccccCeE-EeecCCceEEE--EEeCCCceEEEeCCCcEEEeeCC--CCCCcCCCCCCccccccccccc
Q 015656 152 NGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAG--GSGRLGHGQESSILGFLRSTSE 226 (403)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~--i~~G~~~~~~lt~~G~v~~~G~n--~~gqlG~~~~~~~~~~~~~~~~ 226 (403)
+-.... .... +..-++..++. ++.+.++.+++|++|++|.+-.. .--.+|.....
T Consensus 129 ~~~~~r---------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G----------- 188 (327)
T 3uc1_A 129 FDSNRS---------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG----------- 188 (327)
T ss_dssp GCCCCS---------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----------
T ss_pred hhcccc---------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----------
Confidence 211000 0000 11112222333 33466778999999999999766 33333332210
Q ss_pred ccceeeccccCceEEEEEecC--ceeEEEecCCcEEE
Q 015656 227 YTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYI 261 (403)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~G~--~~~~~l~~~G~v~~ 261 (403)
. ..+..-++..|+.+..-. .+.+++|++|.+--
T Consensus 189 -v-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 189 -V-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp -E-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred -e-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 0 012222344676665542 35677788775443
No 37
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=79.08 E-value=37 Score=31.31 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=47.3
Q ss_pred ecc-eEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEE
Q 015656 113 LEP-LRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVA 191 (403)
Q Consensus 113 ~~p-~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~ 191 (403)
..| ..++ ++. |.+|+. ....+++.+++.|..|--....+ ......++ ..+..+.+-....++
T Consensus 79 ~~~~~~~~-lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-------------~~~~~~~~-~~v~~i~~~~p~~av 141 (388)
T 1xip_A 79 LTFKWEKE-IPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSE-------------FRTVTSFE-KPVFQLKNVNNTLVI 141 (388)
T ss_dssp CCCSEEEE-CTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTC-------------EEEEEECS-SCEEEEEECSSEEEE
T ss_pred ccceEEee-CCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-------------cCccceee-cceeeEEecCCCEEE
Confidence 345 3344 666 999999 77788888899999986543321 11111111 235566665556888
Q ss_pred EeCCCcEEEee
Q 015656 192 VTGGGKVLSWG 202 (403)
Q Consensus 192 lt~~G~v~~~G 202 (403)
++++|.|+.|=
T Consensus 142 ~~~dG~L~v~d 152 (388)
T 1xip_A 142 LNSVNDLSALD 152 (388)
T ss_dssp EETTSEEEEEE
T ss_pred EECCCCEEEEE
Confidence 89999999994
No 38
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=77.30 E-value=40 Score=31.10 Aligned_cols=64 Identities=9% Similarity=0.185 Sum_probs=43.8
Q ss_pred eEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEc
Q 015656 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (403)
Q Consensus 73 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~ 149 (403)
|.+|++ ....+++..++.|..|=-....+ ...+..+...+.++.+-....++++.+|.|+.|--
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~------------~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE------------FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC------------EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc------------cCccceeecceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 77888888999999996443321 11122223355666665555778899999999954
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=76.59 E-value=43 Score=30.11 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=70.1
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISE 107 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 107 (403)
.+++...++.|+.|-....- ....+. .....|..++.. ..+.+.-..+|.|+.|-....
T Consensus 219 ~~~~~~~~g~i~~~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------- 279 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEKT-----------PTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------- 279 (425)
T ss_dssp EEEEECGGGCEEEEETTCSS-----------CSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-------
T ss_pred EEEEEcCCCeEEEEEcCCCc-----------eeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-------
Confidence 34455577788888655311 011111 122346665543 333444566888988843221
Q ss_pred CCCceecceEeecCcCceEEEecCCc-eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC
Q 015656 108 NIGYSLEPLRISGLKKEVVQISTGYH-HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (403)
Q Consensus 108 ~~~~~~~p~~v~~~~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~ 186 (403)
.....+......|..++...+ ..+....+|.|+.|-.... .+..........|..++...
T Consensus 280 -----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 280 -----NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN--------------TLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp -----SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT--------------EEEEEEECTTCCEEEEEECT
T ss_pred -----ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC--------------cEeEecccCCccEEEEEEcC
Confidence 111222223335666655433 5566678899999964321 11111111234566666653
Q ss_pred --CceEEEeCCCcEEEeeC
Q 015656 187 --EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 187 --~~~~~lt~~G~v~~~G~ 203 (403)
...++-..+|.|+.|-.
T Consensus 341 ~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TSSEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEECCCeEEEEEC
Confidence 34455567889998854
No 40
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=76.46 E-value=44 Score=30.23 Aligned_cols=146 Identities=10% Similarity=-0.019 Sum_probs=77.4
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCcc--CCCceEEEEeCC---cceEEEecCCcEEEEEcCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
++.+...++.|++|=....|++-. .+..+ ....|..++... ...+.-..||.|..|-....+...
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~----------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDK----------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCT----------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred EEEEEcCCCEEEEEECccCCCCCC----------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 333456788899998765554311 11111 233577777643 334445678999999754432110
Q ss_pred CCCCCCceecceEeecCcCceEEEecCCc---eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEe-ecCCceEE
Q 015656 105 ISENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTK 180 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~~~~i~~i~~G~~---~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~ 180 (403)
........+......|..++.... ..+.-..||.|+.|-..... ....+. ......|.
T Consensus 119 -----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 119 -----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------------AVLTLGPDVHPDTIY 180 (402)
T ss_dssp -----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------------EEEEECTTTCCSCEE
T ss_pred -----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------------ccEEEecCCCCCceE
Confidence 000112233334446777766543 34445678999999643210 011110 11233566
Q ss_pred EEEeCC--CceEEEeCCCcEEEeeC
Q 015656 181 QAALGF--EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 181 ~i~~G~--~~~~~lt~~G~v~~~G~ 203 (403)
.++... ...+....+|.|+.|-.
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEecCCcEEEEeC
Confidence 666643 34455567899999954
No 41
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=76.15 E-value=45 Score=30.17 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=79.4
Q ss_pred EEeCCcceEEE---ecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC---CceeEEEecCCcEEEEEc
Q 015656 76 LACGGAHTLFL---TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGK 149 (403)
Q Consensus 76 i~~G~~~~~~l---t~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G---~~~~~~l~~~G~v~~wG~ 149 (403)
+++...+..++ ..+|.|+.|-....+.+.. ....+......|..++.. ....+.-..||.|..|-.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 55555555444 4589999997654433211 001122223367676653 344555567899999975
Q ss_pred CCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC---ceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccccccc
Q 015656 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (403)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~---~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 226 (403)
...+.... ...+..........|..++.... ..+.-..||.|+.|--... +
T Consensus 112 ~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~------------------ 165 (402)
T 2aq5_A 112 PDGGLVLP-------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-A------------------ 165 (402)
T ss_dssp CTTCCSSC-------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-E------------------
T ss_pred cCCCCccc-------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-C------------------
Confidence 43321110 11121111112345777776654 3444567899999954311 0
Q ss_pred ccceeec-cccCceEEEEEec--CceeEEEecCCcEEEEeCCC
Q 015656 227 YTPRLIK-ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 227 ~~p~~i~-~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~ 266 (403)
....+. ......|..++.. ....+.-..+|.|..|-...
T Consensus 166 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 166 -AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp -EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred -ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 001110 0112246566553 33455556788999997554
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=71.86 E-value=57 Score=29.42 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEe-ecCcCceEEEecCC--ceeEEEecCCcEEEEEcCCCCCCCCC
Q 015656 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-SGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLG 158 (403)
Q Consensus 82 ~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v-~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG~n~~gqlg~~ 158 (403)
..+.-..+|.|..|-... ..+... ......|..++... ...+.-..||.|+.|-.....
T Consensus 111 ~l~~~~~dg~i~iwd~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----- 172 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNF-------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS----- 172 (420)
T ss_dssp EEEEEETTSCEEEECTTS-------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----
T ss_pred EEEEEECCCCEEEEeCCC-------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----
Confidence 344456788898884221 111222 22334677776543 345556678999999653211
Q ss_pred CCCCcccccCeEEeecCCceEEEEEeCC--CceEEEeCCCcEEEeeC
Q 015656 159 KKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~ 203 (403)
....+.. ....|..++... ...+.-..||.|..|-.
T Consensus 173 --------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 173 --------NPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp --------CCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred --------CceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 1111221 123466665543 34455567888999854
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.41 E-value=92 Score=31.19 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=74.6
Q ss_pred eeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCC
Q 015656 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDF 100 (403)
Q Consensus 23 ~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~ 100 (403)
+......++++...++.|..|-... |+ ....+.. ....|..++.. ....++-..+|.|..|-....
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~-~~----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYET-QV----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT-TE----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCC-Cc----------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 3333445566656788888885432 11 1111111 22346655543 334455567899999964321
Q ss_pred CCCCCCCCCCceecceEeecCcCceEEEecCCc--eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCce
Q 015656 101 GQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIF 178 (403)
Q Consensus 101 gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~--~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~ 178 (403)
. ....+......|..++...+ ..+.-..+|.|..|-..... .....+. .....
T Consensus 88 ~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~-~~~~~ 142 (814)
T 3mkq_A 88 E------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFE-GHEHF 142 (814)
T ss_dssp C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEE-CCSSC
T ss_pred c------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEc-CCCCc
Confidence 1 12223323346666665433 44555678899998642110 0111111 12335
Q ss_pred EEEEEeCC---CceEEEeCCCcEEEeeC
Q 015656 179 TKQAALGF---EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 179 i~~i~~G~---~~~~~lt~~G~v~~~G~ 203 (403)
|..++... ...+....+|.|+.|-.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 66666543 34555678899999954
No 44
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=68.30 E-value=33 Score=34.05 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=32.1
Q ss_pred eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEE----eCCCceEEEeCCCcEEEeeC
Q 015656 134 HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA----LGFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 134 ~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~----~G~~~~~~lt~~G~v~~~G~ 203 (403)
+++++..+|+||++|-.... . ..+..+...+...+. .-..|++++..+|+||.+|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~-------~-------v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK-------K-------TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT-------C-------EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCC-------c-------eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 44677789999999964321 0 011111111222221 12457878877899999986
No 45
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.27 E-value=64 Score=28.59 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=85.0
Q ss_pred CCceEE--EEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC-----CceeEEEecCC
Q 015656 70 KHSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDG 142 (403)
Q Consensus 70 ~~~i~~--i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G-----~~~~~~l~~~G 142 (403)
+..+.. ++.+..+.+++|+.|++|..-...--..+..........-..+. ..+.|+.+... ..+.+++|++|
T Consensus 46 ~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G 124 (312)
T 1suu_A 46 GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASG 124 (312)
T ss_dssp TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCC
Confidence 334444 34456678899999999998654332222111111100111112 22366666543 45688999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCcccccCeE-EeecCCceEEEEEe--CCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccc
Q 015656 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (403)
Q Consensus 143 ~v~~wG~n~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~ 219 (403)
.++-.--..+-.. . . .... +..-++..++.+.. +..+.+++|++|.+..+-....-..|.....
T Consensus 125 ~~kr~~l~~~~~~-r---~-----~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G---- 191 (312)
T 1suu_A 125 KIARFESTDFKAV-K---S-----RGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG---- 191 (312)
T ss_dssp EEEEEEGGGGCC-------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC----
T ss_pred eEEEEEHHHhhcc-C---C-----CcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC----
Confidence 9998765443110 0 0 0001 11112334444433 4567889999999999876544333332110
Q ss_pred cccccccccceeeccccCceEEEEEe--cCceeEEEecCCcEEEEe
Q 015656 220 FLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFG 263 (403)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG 263 (403)
. ..+...++..++.+.. ...+.++++++|..-..-
T Consensus 192 -------v--~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 192 -------V--CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp -------E--ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred -------e--EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 0 0111112334555433 334567777777655443
No 46
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=68.27 E-value=1e+02 Score=30.93 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=76.2
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC----CcceEEEecCCcEEEEEcCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQL 103 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~g~vy~wG~n~~gql 103 (403)
..++++...++.|..|=.... .......+. -....|..++.. ....+.-..||.|+.|-....
T Consensus 21 g~~latg~~dg~I~vwd~~~~---------~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~--- 87 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGE---------THKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG--- 87 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETT---------EEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---
T ss_pred CCeEEEEECCCcEEEEecCCC---------CCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---
Confidence 345556667888988854310 001111111 123457778764 344555678999999964321
Q ss_pred CCCCCCCceecceEeecCcCceEEEecCC----ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceE
Q 015656 104 GISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (403)
Q Consensus 104 G~~~~~~~~~~p~~v~~~~~~i~~i~~G~----~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i 179 (403)
.......+......|..++... ...+.-..+|.|..|-...... ..+..+. .....|
T Consensus 88 -------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----------~~~~~~~-~~~~~v 148 (753)
T 3jro_A 88 -------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIID-AHAIGV 148 (753)
T ss_dssp -------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----------CCCEEEE-CCSSCE
T ss_pred -------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----------cceeEee-cCCCce
Confidence 0111222222334677776653 3566667889999997543211 1111111 122346
Q ss_pred EEEEeCC---------------CceEEEeCCCcEEEeeC
Q 015656 180 KQAALGF---------------EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 180 ~~i~~G~---------------~~~~~lt~~G~v~~~G~ 203 (403)
..++... ...+.-..+|.|..|-.
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~ 187 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEec
Confidence 6665543 34555677899998843
No 47
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=67.10 E-value=1e+02 Score=30.41 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=31.3
Q ss_pred ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEE---EecC-CceeEEEecCCcEEEEEc
Q 015656 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ---ISTG-YHHSSAITVDGELYMWGK 149 (403)
Q Consensus 82 ~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~---i~~G-~~~~~~l~~~G~v~~wG~ 149 (403)
+++++..+|+||++|-.... ......|. ..+-.. +... ..|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~-------~v~~yd~~-----t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK-------KTSLYDSS-----SDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT-------CEEEEEGG-----GTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCC-------ceEEecCc-----CCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 34677789999999953321 11111110 111111 1122 457777777999999996
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=65.79 E-value=73 Score=28.31 Aligned_cols=204 Identities=8% Similarity=-0.011 Sum_probs=97.2
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeC----ccCCCceEEEEeC---CcceEEEecCCcEEEEEcCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCS----AFEKHSLKALACG---GAHTLFLTETGCVYATGLNDF 100 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~i~~G---~~~~~~lt~~g~vy~wG~n~~ 100 (403)
..++++...++.|..|-.........- ......... ......|..++.. ....+.-..+|.|..|-....
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 132 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC
Confidence 355666667888888865532211110 000000000 1133457777764 345555677999999964321
Q ss_pred CCCCCCCCCCceecceEeecCcCceEEEecCC-----ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecC
Q 015656 101 GQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS 175 (403)
Q Consensus 101 gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~-----~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~ 175 (403)
.+.........+..+.... ...++-..+|.|+.|-..... ....+.. .
T Consensus 133 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~~-~ 185 (408)
T 4a11_B 133 -------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-------------CSHILQG-H 185 (408)
T ss_dssp -------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-------------CCEEECC-C
T ss_pred -------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-------------eeeeecC-C
Confidence 1111111333444444432 245566788999999653211 1111111 2
Q ss_pred CceEEEEEeCCCc---eEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecC--cee
Q 015656 176 GIFTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHS 250 (403)
Q Consensus 176 ~~~i~~i~~G~~~---~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~ 250 (403)
...|..++..... .+.-..+|.|+.|-.......-...... .......+..........|..++... .+.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH-----NGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT-----TTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc-----ccccceeeccccccccCceeEEEEcCCCCEE
Confidence 2356666665432 4456788999999654321100000000 00000000000011122566666543 356
Q ss_pred EEEecCCcEEEEeCCC
Q 015656 251 ACIDENGRVYIFGDRA 266 (403)
Q Consensus 251 ~~l~~~G~v~~wG~n~ 266 (403)
++...+|.|..|-...
T Consensus 261 ~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEEETTSCEEEEETTT
T ss_pred EEecCCCeEEEEECCC
Confidence 6667889999997554
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=65.69 E-value=68 Score=27.90 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=57.3
Q ss_pred CceEEEEeCCc-----ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEe--------cCCceeEE
Q 015656 71 HSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--------TGYHHSSA 137 (403)
Q Consensus 71 ~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~--------~G~~~~~~ 137 (403)
..|..++.... ..+.-..+|.|..|-..... .....+......|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 45777776653 34455678999999543211 01122232334566662 22335555
Q ss_pred EecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecC---CceEEEEE------eCCCceEEEeCCCcEEEeeC
Q 015656 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS---GIFTKQAA------LGFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 138 l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~---~~~i~~i~------~G~~~~~~lt~~G~v~~~G~ 203 (403)
-..+|.|..|-...... ....+.... ...+..++ ......++-..+|.|+.|-.
T Consensus 135 ~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp EETTSCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCCC------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 67789999996432210 111111111 22455555 23444555677899999954
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=65.01 E-value=76 Score=28.23 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=72.0
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccC----CCceEEEEeC------Ccc-eEEEecCCcEEEEEc
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE----KHSLKALACG------GAH-TLFLTETGCVYATGL 97 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~i~~G------~~~-~~~lt~~g~vy~wG~ 97 (403)
.++++...++.|+.|=....-. ........+.... ...|..++.. ..+ .+....+|.|+.|-.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 5666666788888886543111 0001122222221 2457767655 334 445568899999965
Q ss_pred CCCCCCCCCCCCCceecce-Eee-------cCcCceEEEecCCc-eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccC
Q 015656 98 NDFGQLGISENIGYSLEPL-RIS-------GLKKEVVQISTGYH-HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (403)
Q Consensus 98 n~~gqlG~~~~~~~~~~p~-~v~-------~~~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p 168 (403)
.....-... ......|. .+. .....|..++...+ ..+.-..+|.|+.|-.... ...
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~ 220 (397)
T 1sq9_A 156 HPFADESNS--LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-------------RPL 220 (397)
T ss_dssp ESSSSHHHH--TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-------------EEE
T ss_pred Ccccccccc--ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-------------cee
Confidence 430000000 00011111 221 11234555554433 4444557888999864321 011
Q ss_pred eEEeec--C---CceEEEEEeCC--CceEEEeCC---CcEEEeeC
Q 015656 169 TKVECL--S---GIFTKQAALGF--EQSVAVTGG---GKVLSWGA 203 (403)
Q Consensus 169 ~~~~~~--~---~~~i~~i~~G~--~~~~~lt~~---G~v~~~G~ 203 (403)
..+... . ...|..++... .+.++-..+ |.|+.|-.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 111110 1 34577776643 334444566 88888854
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=63.97 E-value=76 Score=27.84 Aligned_cols=111 Identities=8% Similarity=0.010 Sum_probs=60.1
Q ss_pred CceEEEEeCCcc--eEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC----CceeEEEecCCcE
Q 015656 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (403)
Q Consensus 71 ~~i~~i~~G~~~--~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G----~~~~~~l~~~G~v 144 (403)
..|..++..... .+.-..||.|..|-... ........+......|..++.. ....+.-..||.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 346666655333 23334688899985421 0111112233233477777754 3455666788999
Q ss_pred EEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC----ceEEEeCCCcEEEeeC
Q 015656 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE----QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 145 ~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~----~~~~lt~~G~v~~~G~ 203 (403)
..|-.... ...+..........|..++...+ ..++...+|.|..|=.
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 99964321 00111111112345777776644 4566678999999854
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=61.63 E-value=1.7e+02 Score=31.12 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=35.3
Q ss_pred ceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC-ceeEEEecCCcEEEEE
Q 015656 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITVDGELYMWG 148 (403)
Q Consensus 72 ~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~-~~~~~l~~~G~v~~wG 148 (403)
.|..++... .+.+.-..||.|..|-..... ...+......|..++... ...+....+|.|+.|-
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------------YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTE-------------EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 354454432 334445678899999643211 111112233555554433 3455667789999996
Q ss_pred cC
Q 015656 149 KN 150 (403)
Q Consensus 149 ~n 150 (403)
..
T Consensus 1072 ~~ 1073 (1249)
T 3sfz_A 1072 VI 1073 (1249)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=61.41 E-value=82 Score=27.41 Aligned_cols=156 Identities=8% Similarity=-0.021 Sum_probs=80.8
Q ss_pred CCceEEEEeC------CcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc------eeEE
Q 015656 70 KHSLKALACG------GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH------HSSA 137 (403)
Q Consensus 70 ~~~i~~i~~G------~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~------~~~~ 137 (403)
...|..|+.. ....++-..++.|..|-......+ .......-......|..++-... ..+.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3467777765 445666677888999965422110 00011110011235655554333 4555
Q ss_pred EecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC---CceEEEeCCCcEEEeeCCCCCCcCCCCC
Q 015656 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQE 214 (403)
Q Consensus 138 l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~---~~~~~lt~~G~v~~~G~n~~gqlG~~~~ 214 (403)
-..+|.|..|-.... .....+. .....|..++... ...+.-..+|.|+.|-.....
T Consensus 91 ~~~dg~i~v~d~~~~-------------~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 91 AGSRGIIRIINPITM-------------QCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EETTCEEEEECTTTC-------------CEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred ecCCCEEEEEEchhc-------------eEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 668899999954321 0111111 1234577777654 445556789999999542110
Q ss_pred Ccccccccccccccceeec--cccCceEEEEEec--CceeEEEecCCcEEEEeCCC
Q 015656 215 SSILGFLRSTSEYTPRLIK--ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 215 ~~~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~ 266 (403)
....+. ......|..++.. ..+.+....+|.|..|-...
T Consensus 150 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 150 -------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp -------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred -------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 001110 0112256666654 33555666789999996553
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=60.77 E-value=86 Score=27.44 Aligned_cols=147 Identities=5% Similarity=-0.104 Sum_probs=72.5
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
...++++...++.|+.|-.... + ......+.. ....|..++.. ....+.-..||.|..|-....
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~-~--------~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 84 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGN-K--------WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---- 84 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETT-E--------EEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT----
T ss_pred CCCEEEEEeCCCEEEEEeCCCC-c--------EEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC----
Confidence 3455666667888888864321 0 001111111 23356666654 233444567888888854211
Q ss_pred CCCCCCceecceEeecCcCceEEEecC--CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEE
Q 015656 105 ISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i 182 (403)
.......+......|..++.. ....+.-..+|.|+.|-...... ......+.......|..+
T Consensus 85 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 85 ------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----------WWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------EEEEEEECTTCCSCEEEE
T ss_pred ------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------ceeeeeeecccCCCeeEE
Confidence 001111122233356666553 33455556788888886432110 001111111113357777
Q ss_pred EeCCC--ceEEEeCCCcEEEeeC
Q 015656 183 ALGFE--QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 183 ~~G~~--~~~~lt~~G~v~~~G~ 203 (403)
+...+ ..++-..+|.|+.|-.
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC
T ss_pred EEcCCCCEEEEEcCCCCEEEEEc
Confidence 66543 3445567899999964
No 55
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=60.31 E-value=85 Score=27.22 Aligned_cols=162 Identities=14% Similarity=-0.037 Sum_probs=83.8
Q ss_pred CCCceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEec---CCceeEEEecCCc
Q 015656 69 EKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGE 143 (403)
Q Consensus 69 ~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~---G~~~~~~l~~~G~ 143 (403)
++..+..+.... .+.+++|++|++|.---... ... ...-. ++ ..++|+.+.+ .....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l---p~~-----~~~~l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA---LQG-----SKVSL-KS-REEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHH---HTS-----EECCC-SS-TTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC---ccC-----ccccc-CC-CCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 334455554443 44788999999997532111 000 00001 22 2347887765 1256888999998
Q ss_pred EEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe--CCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccc
Q 015656 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (403)
Q Consensus 144 v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~ 221 (403)
+.-.--..+-+-. . -...+...++..++.+.. +..+.+++|++|++|.+-....-.+|.....
T Consensus 92 iKr~~l~~~~~~~---~------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G------ 156 (276)
T 3no0_A 92 VKKIPLAEFEYKA---Q------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG------ 156 (276)
T ss_dssp EEEEEGGGTTTCS---T------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC------
T ss_pred EEEEEHHHhhhhc---C------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC------
Confidence 8776544432100 0 000111112334444433 4556899999999999976544333332211
Q ss_pred cccccccceeeccccCceEEEEEec--CceeEEEecCCcEEEE
Q 015656 222 RSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIF 262 (403)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~w 262 (403)
.+ .+..-++.+|+.+... ..+.+++|++|.+.-.
T Consensus 157 ------v~-~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 157 ------VQ-GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKI 192 (276)
T ss_dssp ------EE-CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEE
T ss_pred ------EE-EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEe
Confidence 00 1111123456655443 3456777888866544
No 56
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=57.22 E-value=1.2e+02 Score=27.79 Aligned_cols=158 Identities=9% Similarity=0.016 Sum_probs=77.7
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc---ceEEEecCCcEEEEEcCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
..++++...++.|++|-.......- .......|..........|..++.... +.+.-..+|.|..|-......
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-- 216 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK-- 216 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSC--CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB--
T ss_pred CcEEEEECCCCcEEEEECCCccccc--CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC--
Confidence 4567777788889999876421110 000001111111112223555554322 444456789999997654211
Q ss_pred CCCCCCceec-ceEeecCcCceEEEecC---CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEE
Q 015656 105 ISENIGYSLE-PLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (403)
Q Consensus 105 ~~~~~~~~~~-p~~v~~~~~~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~ 180 (403)
...... ...+......|..|+.. ....+....+|.|+.|-...... ..+..........|.
T Consensus 217 ----~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 217 ----EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAEVN 281 (430)
T ss_dssp ----GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-----------SSCSEEEECCSSCEE
T ss_pred ----CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-----------CcceeEeecCCCCeE
Confidence 011111 12222233467777653 34444556799999997543210 011111111233566
Q ss_pred EEEeCCC--c-eEEEeCCCcEEEeeCC
Q 015656 181 QAALGFE--Q-SVAVTGGGKVLSWGAG 204 (403)
Q Consensus 181 ~i~~G~~--~-~~~lt~~G~v~~~G~n 204 (403)
.++.... + .+.-..+|.|..|-..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 6766542 2 3345678999999643
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=57.15 E-value=89 Score=26.45 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=74.8
Q ss_pred eeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--CcceEEEecCCcEEEEEcCCCCCCC
Q 015656 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
....+++...++.|..|-.... ..+..+.. ....|..++.. ..+.+.-..+|.+..|-......
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-- 93 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-- 93 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--
T ss_pred CCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--
Confidence 4455666678899999975321 11111111 23345555543 33444456778888775432110
Q ss_pred CCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe
Q 015656 105 ISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~ 184 (403)
......+......|..++.-....+.-..+|.|..|-.. .+..........+..++.
T Consensus 94 -------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~----------------~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 94 -------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG----------------SLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp -------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT----------------EEEEEEECCSSCEEEEEE
T ss_pred -------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC----------------cEEEecccCCCceeEEEE
Confidence 011122232334777777766777777889999999510 111111112234555443
Q ss_pred ---CCCceEEEeCCCcEEEee
Q 015656 185 ---GFEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 185 ---G~~~~~~lt~~G~v~~~G 202 (403)
.....++...+|.|+.|-
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEe
Confidence 455666778889999994
No 58
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.92 E-value=1.2e+02 Score=27.73 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=68.0
Q ss_pred CCceEEE--EeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC-----CceeEEEecCC
Q 015656 70 KHSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDG 142 (403)
Q Consensus 70 ~~~i~~i--~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G-----~~~~~~l~~~G 142 (403)
+..+..+ +.+..+.+++|+.|++|..-...--..+..........-..+. ..++|+.+.+- ..+.+++|++|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 3345444 3444557789999999988754433332221111000001111 23477776653 34678899999
Q ss_pred cEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEE--EEEeCCCceEEEeCCCcEEEeeCCCCCCcCC
Q 015656 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK--QAALGFEQSVAVTGGGKVLSWGAGGSGRLGH 211 (403)
Q Consensus 143 ~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~--~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~ 211 (403)
.+--.--..+-... ... . .-..+. ++..++ .+.-+..+.+++|++|++..+-...--.+|.
T Consensus 124 ~vKrt~l~e~~~~~--~~G---~-~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 124 TVKKTPLSEFAFRL--ARG---K-IAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp EEEEEEGGGGCSCC--TTC---E-ESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred eEEEeEHHHhhccc--CCc---e-EEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 88766543332110 000 0 000111 122232 2334667889999999999886554433333
No 59
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.90 E-value=1.1e+02 Score=27.36 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=114.7
Q ss_pred ccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCC-----cceEEEecCC
Q 015656 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG-----AHTLFLTETG 90 (403)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~~~~lt~~g 90 (403)
.|....+.....|..++.-++.|.+|..--..--..+... .-......+...++++|+.+.+.. ...+++|++|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 4454444555556555555588999988755322221111 111111234444678899887765 3567889999
Q ss_pred cEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEE--EecCCceeEEEecCCcEEEEEcC--CCCCCCCCCCCCcccc
Q 015656 91 CVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKN--SNGQLGLGKKAAKVIP 166 (403)
Q Consensus 91 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~--i~~G~~~~~~l~~~G~v~~wG~n--~~gqlg~~~~~~~~~~ 166 (403)
.+.-.-...+-... .....-..+.. .+.++. ++.+.++.+++|++|++|.+-.. .--.+|....-.+
T Consensus 120 ~iKr~~l~~~~~~~-----r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~--- 190 (327)
T 3uc1_A 120 LVKKSKLTDFDSNR-----SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ--- 190 (327)
T ss_dssp EEEEEEGGGGCCCC-----SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE---
T ss_pred EEEEeEHHHhhccc-----cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee---
Confidence 88876543332110 00011111111 123333 34567889999999999998765 3332332211110
Q ss_pred cCeEEeecCCceEEEEEeCC--CceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEE-
Q 015656 167 IPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA- 243 (403)
Q Consensus 167 ~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i- 243 (403)
.+...++.+|+.+..-. .+.+++|++|.+.-.--..+-..+.+... ..-.++..- +..++.+
T Consensus 191 ---~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----------~~~~~l~~~-~d~lv~~~ 255 (327)
T 3uc1_A 191 ---GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----------VLTVMYDRR-RGRLVGAL 255 (327)
T ss_dssp ---SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----------EESSCCCTT-TCSEEEEE
T ss_pred ---eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----------EEEEEecCC-CCeEEEEE
Confidence 12222455677766543 35778899997776543332211111100 000011100 1123332
Q ss_pred -EecCceeEEEecCCcEEEEeCCC
Q 015656 244 -AAGFLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 244 -~~G~~~~~~l~~~G~v~~wG~n~ 266 (403)
..+....++++++|++.-+-...
T Consensus 256 ~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 256 IVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EeCCCccEEEEcCCCeEEEEehhh
Confidence 33567788899999887665443
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=56.20 E-value=99 Score=26.67 Aligned_cols=150 Identities=10% Similarity=-0.064 Sum_probs=78.4
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC--Cc-ceEEEecCCcEEEEEcCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GA-HTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~-~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
..++++...++.|+.|-..... ....+.... .....|..++.. .. +.++-..+|.|+.|-....+
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--- 90 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--- 90 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---
T ss_pred CCEEEEEcCCCeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---
Confidence 3556666688888888755321 001112211 223356666654 33 45556778999999531111
Q ss_pred CCCCCCceecceEeec--CcCceEEEecC-CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEE
Q 015656 105 ISENIGYSLEPLRISG--LKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ 181 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~--~~~~i~~i~~G-~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~ 181 (403)
....+.. ....|..++.. ....+.-..+|.|+.|-......- .......+..... ....|..
T Consensus 91 ---------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 91 ---------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSNNTK-VKNKIFT 155 (342)
T ss_dssp ---------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSSSSS-SCCCEEE
T ss_pred ---------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeeeEEe-eCCceEE
Confidence 1133333 33456555543 456666778899999953221000 0000000000000 1235777
Q ss_pred EEeCCCceEEEeCCCcEEEeeCC
Q 015656 182 AALGFEQSVAVTGGGKVLSWGAG 204 (403)
Q Consensus 182 i~~G~~~~~~lt~~G~v~~~G~n 204 (403)
++...+..++.+.+|.|+.|-..
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLP 178 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESS
T ss_pred EEecCCcEEEEeCCCeEEEEECC
Confidence 77777777777889999999654
No 61
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=54.80 E-value=1.2e+02 Score=27.25 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred ceEEEecCC--ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCc--eEEEeCCCcEE
Q 015656 124 EVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ--SVAVTGGGKVL 199 (403)
Q Consensus 124 ~i~~i~~G~--~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~--~~~lt~~G~v~ 199 (403)
.|..++... .+.+.-..||.|..|--.............. ......+. -....|..++...+. .+.-..||.|+
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS-GTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC-CcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 566666543 3444456789999996533211110000000 00000111 112246666665443 34446788999
Q ss_pred EeeC
Q 015656 200 SWGA 203 (403)
Q Consensus 200 ~~G~ 203 (403)
.|-.
T Consensus 336 iwd~ 339 (393)
T 1erj_A 336 FWDK 339 (393)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9953
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=54.65 E-value=1e+02 Score=26.45 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=32.2
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEc
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGL 97 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~ 97 (403)
.++++...|+.|..|=....- .....|..........|..++.... +.+.-..||.|+.|-.
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 466677788888888654311 1111222211112234666655433 3334456788887754
No 63
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=52.63 E-value=1.1e+02 Score=26.22 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=75.8
Q ss_pred cccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEe--CCcceEEEecCCcEEEEE
Q 015656 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATG 96 (403)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG 96 (403)
+..+++.....++++...|+.|..|=... ++ ....+.. ....|..++. .....+.-..|+.|..|-
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYET-QV----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT-TE----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCC-Cc----------eeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 33444444456677777889999995432 11 1111111 1223444433 233444456788899985
Q ss_pred cCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc--eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeec
Q 015656 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (403)
Q Consensus 97 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~--~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~ 174 (403)
.... .....+..-...|..|+...+ +.+.-..||.|..|-..... .+......
T Consensus 84 ~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~~~ 138 (304)
T 2ynn_A 84 YNTG------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTFEG 138 (304)
T ss_dssp TTTC------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEECC
T ss_pred CCCC------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------chhhhhcc
Confidence 4321 112233333446777665443 34445678999999642110 11111111
Q ss_pred CCceEEEEEeCC---CceEEEeCCCcEEEeeC
Q 015656 175 SGIFTKQAALGF---EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 175 ~~~~i~~i~~G~---~~~~~lt~~G~v~~~G~ 203 (403)
....|..++... ...+.-..||.|..|--
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 223467777653 23445568899999953
No 64
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=50.16 E-value=1.3e+02 Score=26.15 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=12.3
Q ss_pred ceeEEEecCCcEEEEEcC
Q 015656 133 HHSSAITVDGELYMWGKN 150 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n 150 (403)
.|++++. +++||.+|-.
T Consensus 102 ~~~~~~~-~~~iyv~GG~ 118 (318)
T 2woz_A 102 LFGLGEV-DDKIYVVAGK 118 (318)
T ss_dssp SCEEEEE-TTEEEEEEEE
T ss_pred ccceEEE-CCEEEEEcCc
Confidence 5666555 7899999853
No 65
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=48.21 E-value=1.6e+02 Score=26.69 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=49.8
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGI 105 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~ 105 (403)
..++++...|+.|..|=... +++ ...+.. ....|..|+.... ..+.-..||.|..|-......
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~-~~~----------~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~--- 184 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYET-GDF----------ERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--- 184 (410)
T ss_dssp SSEEEEEESSSCEEEEETTT-CCC----------CEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---
T ss_pred CCEEEEEeCCCeEEEEECCC-CcE----------EEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---
Confidence 34666666788888886432 110 111111 1234666665432 233345678888885432110
Q ss_pred CCCCCceecceEeecCcCceEEEecC--CceeEEEecCCcEEEEEc
Q 015656 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (403)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~ 149 (403)
...+......|..++.. ..+.+.-..|+.|..|--
T Consensus 185 ---------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 185 ---------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp ---------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ---------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 01111122356665543 345555678899999964
No 66
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=47.76 E-value=94 Score=23.98 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCCceEEEEeCC-cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC-CceeEEEecCCcEEE
Q 015656 69 EKHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYM 146 (403)
Q Consensus 69 ~~~~i~~i~~G~-~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G-~~~~~~l~~~G~v~~ 146 (403)
+..+.+++-|-. .+-+-+..||+|-.-.... ... .-..+......++.|.|- ..+.+++..+|+||+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~---------~~~--s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS---------DTH--IQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT---------CGG--GCEEEEEEETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC---------CCc--eEEEEEEccCCEEEEEEecCCEEEeECCCCCEee
Confidence 445688898876 6778889999998653221 111 111122122256777764 577888999999997
Q ss_pred EEcCCCCCCCCCCCCCcccccCeEEeecC--CceEEEEEeCCCceEEEeCCCcEEE
Q 015656 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLS--GIFTKQAALGFEQSVAVTGGGKVLS 200 (403)
Q Consensus 147 wG~n~~gqlg~~~~~~~~~~~p~~~~~~~--~~~i~~i~~G~~~~~~lt~~G~v~~ 200 (403)
--. . .. ......+.... ...|+.+..| ..++++.+|++|.
T Consensus 97 s~~--~--------t~--ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD--R--------SD--THIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp ECC--T--------TC--GGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred ccc--C--------CC--CceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 422 1 11 11111222111 2233333333 4889999999996
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=46.44 E-value=2.4e+02 Score=28.21 Aligned_cols=110 Identities=8% Similarity=0.021 Sum_probs=59.1
Q ss_pred ceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC----CceeEEEecCCcEE
Q 015656 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (403)
Q Consensus 72 ~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G----~~~~~~l~~~G~v~ 145 (403)
.|..++... ...+.-..||.|..|-... ........+..-...|..++.. ....+.-..||.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCC----------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 355555432 2333445789999985321 0111122233233477777754 34556667899999
Q ss_pred EEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC----ceEEEeCCCcEEEeeC
Q 015656 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE----QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 146 ~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~----~~~~lt~~G~v~~~G~ 203 (403)
.|-.... ...+..........|..++.... ..+..+.+|.|..|--
T Consensus 81 vwd~~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 81 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred EEECCCC------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 9964321 00111111112345777776643 4566678899999954
No 68
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.94 E-value=1.6e+02 Score=25.96 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred EEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEec-----CCceeEEEecCCcEEEEE
Q 015656 74 KALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDGELYMWG 148 (403)
Q Consensus 74 ~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~-----G~~~~~~l~~~G~v~~wG 148 (403)
..++....+.+++|+.|++|..-...--..+..........-..+. ..++|+.+.. ...+.+++|++|.+--.-
T Consensus 47 ~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 47 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Q ss_pred cCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccccccccc
Q 015656 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (403)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~ 228 (403)
-..+ ....+.-..-..+..-...--.....+.++.+++|++|+++.+-....-.+|.... -
T Consensus 126 l~e~------~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-------------G 186 (307)
T 1zi0_A 126 LTEF------NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-------------G 186 (307)
T ss_dssp GGGG------TTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------C
T ss_pred HHHh------hccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-------------C
Q ss_pred ceeeccccCceEEEEEe--cCceeEEEecCC
Q 015656 229 PRLIKELEGVKVKIAAA--GFLHSACIDENG 257 (403)
Q Consensus 229 p~~i~~~~~~~i~~i~~--G~~~~~~l~~~G 257 (403)
...+..-++..|+.+.. .....++++++|
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G 217 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNG 217 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTS
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCC
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=45.90 E-value=1.5e+02 Score=25.66 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=75.4
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
.++++...++.|..|=....++ .....+.. ....|..++.... +.+.-..||.|..|-....
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------ 118 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------ 118 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred eEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------
Confidence 5666666788888887654221 11111211 2345777776533 4455567899999964321
Q ss_pred CCCCceecceEeecCcCceEEEec--CC--ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEE
Q 015656 107 ENIGYSLEPLRISGLKKEVVQIST--GY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~--G~--~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i 182 (403)
.+..+......|..++. .. ...+.-..||.|+.|-....- ....+.. ...+..+
T Consensus 119 -------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~--~~~~~~~ 176 (368)
T 3mmy_A 119 -------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-------------PMMVLQL--PERCYCA 176 (368)
T ss_dssp -------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------------CSEEEEC--SSCEEEE
T ss_pred -------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------------EEEEEec--CCCceEE
Confidence 12223334446777764 33 234555678999999543210 0111111 1235555
Q ss_pred EeCCCceEEEeCCCcEEEeeC
Q 015656 183 ALGFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 183 ~~G~~~~~~lt~~G~v~~~G~ 203 (403)
..-....++.+.++.+..|-.
T Consensus 177 ~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 177 DVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp EEETTEEEEEEGGGCEEEEEC
T ss_pred EecCCeeEEEeCCCcEEEEEe
Confidence 555667777888889988854
No 70
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=43.93 E-value=1.5e+02 Score=25.34 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.9
Q ss_pred CceEEEeCCCcEEEeeC
Q 015656 187 EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 187 ~~~~~lt~~G~v~~~G~ 203 (403)
.|++++. ++++|.+|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 5666666 679999985
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=41.82 E-value=2.3e+02 Score=26.76 Aligned_cols=108 Identities=10% Similarity=0.008 Sum_probs=57.9
Q ss_pred CceEEEEeCCc---ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcC---ceEEEecCCc---eeEEEecC
Q 015656 71 HSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK---EVVQISTGYH---HSSAITVD 141 (403)
Q Consensus 71 ~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~---~i~~i~~G~~---~~~~l~~~ 141 (403)
..|..++.... ..+.-..+|.|..|-.... .....+..... .|..++...+ ..+....+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 35666665544 3445567889999952211 11122222333 5766665543 45556778
Q ss_pred CcEEEEEcCCCCCCCCCCCCCcccccCeEEee---cCCceEEEEEeC-CCceEEEeCCCcEEEeeC
Q 015656 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC---LSGIFTKQAALG-FEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 142 G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~---~~~~~i~~i~~G-~~~~~~lt~~G~v~~~G~ 203 (403)
|.|+.|-..... ....+.. .....|..++.. ....+....+|.|..|-.
T Consensus 229 g~i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 229 RKISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281 (615)
T ss_dssp CCEEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred CeEEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEEC
Confidence 999999643210 0011100 122346666653 344555667899999954
No 72
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=41.06 E-value=1.9e+02 Score=25.54 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=33.1
Q ss_pred ceEEEecC-CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC--ceEEEeCCCcEEE
Q 015656 124 EVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLS 200 (403)
Q Consensus 124 ~i~~i~~G-~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~lt~~G~v~~ 200 (403)
.|..++-. ....++-..+|.|..|--..... .........--...|..++...+ ..+.-..+|.|..
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~----------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES----------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce----------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 56666532 34445556788888884321110 00111111111234666666544 3344467888988
Q ss_pred eeC
Q 015656 201 WGA 203 (403)
Q Consensus 201 ~G~ 203 (403)
|-.
T Consensus 166 wd~ 168 (357)
T 4g56_B 166 WDL 168 (357)
T ss_dssp EET
T ss_pred EEC
Confidence 843
No 73
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=38.86 E-value=1.8e+02 Score=24.76 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred EecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc--eeEEEecCCcEEEEEcCCCCCCCCCCCCCc
Q 015656 86 LTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (403)
Q Consensus 86 lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~--~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~ 163 (403)
-..|+.|..|-.... .....+......|..|+...+ ..+.-..||.|..|-.....
T Consensus 191 ~~~d~~i~i~d~~~~------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~---------- 248 (340)
T 4aow_A 191 CGWDKLVKVWNLANC------------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---------- 248 (340)
T ss_dssp EETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE----------
T ss_pred EcCCCEEEEEECCCC------------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc----------
Confidence 456788888853211 111222223346666665433 33444578899998643211
Q ss_pred ccccCeEEeecCCceEEEEEeCC-CceEEEeCCCcEEEeeC
Q 015656 164 VIPIPTKVECLSGIFTKQAALGF-EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 164 ~~~~p~~~~~~~~~~i~~i~~G~-~~~~~lt~~G~v~~~G~ 203 (403)
....+. ....+..++... ...++...++.|..|-.
T Consensus 249 ---~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 249 ---HLYTLD--GGDIINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp ---EEEEEE--CSSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred ---eeeeec--CCceEEeeecCCCCceeeccCCCEEEEEEC
Confidence 001111 122355555443 34555667888888853
No 74
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=37.80 E-value=2.3e+02 Score=25.65 Aligned_cols=148 Identities=8% Similarity=-0.047 Sum_probs=76.7
Q ss_pred EEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCC---cceEEEecCCcEEEEEcCCCCCCCCC
Q 015656 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 30 ~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
++++...++.|..|-.+...... ....|..........|..|+... ...+....+|.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----
Confidence 66666678888888866532111 01111111112234577777643 3344456799999997543210
Q ss_pred CCCCceecceEeecCcCceEEEecCCc---eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEE
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~~---~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (403)
......+......|..|+.... ..+.-..+|.|..|-.....+ |..........|..++
T Consensus 267 -----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i~ 328 (430)
T 2xyi_A 267 -----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQ 328 (430)
T ss_dssp -----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEECCSSCEEEEE
T ss_pred -----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------CeEEeecCCCCEEEEE
Confidence 0011122223345666665432 234456789999997543211 1111111233577777
Q ss_pred eCCCc---eEEEeCCCcEEEeeCC
Q 015656 184 LGFEQ---SVAVTGGGKVLSWGAG 204 (403)
Q Consensus 184 ~G~~~---~~~lt~~G~v~~~G~n 204 (403)
...+. .+.-..+|.|..|--.
T Consensus 329 ~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 329 WSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp ECSSCTTEEEEEETTSCCEEEEGG
T ss_pred ECCCCCCEEEEEeCCCcEEEEeCC
Confidence 65433 4445678899998544
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=37.51 E-value=2.2e+02 Score=25.23 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=36.9
Q ss_pred CceEEEEeC---CcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc---eeEEEecCCcE
Q 015656 71 HSLKALACG---GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGEL 144 (403)
Q Consensus 71 ~~i~~i~~G---~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~---~~~~l~~~G~v 144 (403)
..|..++.. ....+.-..||.|+.|-.......... .....+.........|..++...+ ..+.-..+|.|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN---YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT---CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc---ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 356667654 334445567899999964432100000 000011111112235555555433 33444578899
Q ss_pred EEEEc
Q 015656 145 YMWGK 149 (403)
Q Consensus 145 ~~wG~ 149 (403)
..|-.
T Consensus 191 ~iwd~ 195 (416)
T 2pm9_A 191 SIWDL 195 (416)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99964
No 76
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=37.47 E-value=2e+02 Score=24.85 Aligned_cols=138 Identities=10% Similarity=0.035 Sum_probs=64.7
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEE--ecCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l--t~~g~vy~wG~n~~gqlG~~ 106 (403)
.++++...|+.|..|-.... + ..+.....-....|..++......+++ ..|+.|..|-.....
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~-~---------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~----- 113 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE-R---------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK----- 113 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT-E---------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----
T ss_pred CEEEEEcCCCCEEEEECCCC-C---------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----
Confidence 35666778888888864321 0 011110011223466666655444333 468899999532210
Q ss_pred CCCCceecceEeecCcCce--EEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe
Q 015656 107 ENIGYSLEPLRISGLKKEV--VQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i--~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~ 184 (403)
....+..-...+ ..++.-....+.-..+|.|..|...... ....+. .....|..++.
T Consensus 114 -------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~-~~~~~v~~~~~ 172 (321)
T 3ow8_A 114 -------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------KEYSLD-TRGKFILSIAY 172 (321)
T ss_dssp -------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-------------EEEEEE-CSSSCEEEEEE
T ss_pred -------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-------------eeEEec-CCCceEEEEEE
Confidence 111122111122 2233333444445567888888643210 001111 12234555555
Q ss_pred CCC--ceEEEeCCCcEEEee
Q 015656 185 GFE--QSVAVTGGGKVLSWG 202 (403)
Q Consensus 185 G~~--~~~~lt~~G~v~~~G 202 (403)
..+ ..+.-..+|.|..|-
T Consensus 173 spdg~~lasg~~dg~i~iwd 192 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFD 192 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEE
Confidence 443 334445778888884
No 77
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=37.27 E-value=2.2e+02 Score=25.20 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=37.9
Q ss_pred CceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC---CceeEEEecCCcEE
Q 015656 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELY 145 (403)
Q Consensus 71 ~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G---~~~~~~l~~~G~v~ 145 (403)
..|..++.... ..+.-..+|.|..|-...... .......+......|..++.. ....+.-..+|.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN--------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS--------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc--------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 35777765433 333345789999995432100 000112222233356666553 34455556789999
Q ss_pred EEEcC
Q 015656 146 MWGKN 150 (403)
Q Consensus 146 ~wG~n 150 (403)
.|-..
T Consensus 140 iwd~~ 144 (416)
T 2pm9_A 140 IWDMN 144 (416)
T ss_dssp BCBTT
T ss_pred EEECC
Confidence 99654
No 78
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.43 E-value=2.1e+02 Score=24.68 Aligned_cols=213 Identities=12% Similarity=0.055 Sum_probs=108.5
Q ss_pred ccccccceeeeeeeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeC---CcceEEEecCCcE
Q 015656 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCV 92 (403)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~v 92 (403)
.|.....-....|..++.-+++|.+|.---.. |-... .. . + ..++++|+.+.+- ..+.+++|++|.+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~---~~--~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS---KV--S-L-KSREEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE---EC--C-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc---cc--c-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 34444444444554444445888888654321 10000 00 0 3 3357788888761 2467889999988
Q ss_pred EEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEe--cCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeE
Q 015656 93 YATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTK 170 (403)
Q Consensus 93 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~--~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~ 170 (403)
.-.--..+-+- . .-..-..+. -.+.++.+. .+.++.+++|++|++|.+-....-.+|....-.. .
T Consensus 93 Kr~~l~~~~~~-----~-~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~------~ 159 (276)
T 3no0_A 93 KKIPLAEFEYK-----A-QGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ------G 159 (276)
T ss_dssp EEEEGGGTTTC-----S-TTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE------C
T ss_pred EEEEHHHhhhh-----c-CCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE------E
Confidence 87764444210 0 000111111 112444433 3556789999999999987654433332211111 1
Q ss_pred EeecCCceEEEEEeC--CCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEE--Eec
Q 015656 171 VECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA--AAG 246 (403)
Q Consensus 171 ~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i--~~G 246 (403)
+...++.+|+.+... ....+++|++|.+.-.--..+-..+.+...- . .+ ..+.+++.+ ..+
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv--------~-----~i--~~~~~lv~~~~~~~ 224 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGT--------E-----VS--GTKDTLVDLIPIKE 224 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCE--------E-----CC--CSSSCEEEEEEESS
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcce--------E-----EE--cCCCcEEEEEEeCC
Confidence 112234556665543 3457888999988877654443222221100 0 00 111234333 235
Q ss_pred CceeEEEecCCcEEE--EeCCC
Q 015656 247 FLHSACIDENGRVYI--FGDRA 266 (403)
Q Consensus 247 ~~~~~~l~~~G~v~~--wG~n~ 266 (403)
....++++++|++.- +-.+.
T Consensus 225 ~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 225 EVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEcCCCeEEEeeeCHHH
Confidence 567888899998876 65443
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=36.41 E-value=2.1e+02 Score=24.61 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCceEEEEeCCcc-eEEEec-----CCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc-----eeEEE
Q 015656 70 KHSLKALACGGAH-TLFLTE-----TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH-----HSSAI 138 (403)
Q Consensus 70 ~~~i~~i~~G~~~-~~~lt~-----~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~-----~~~~l 138 (403)
...|..|+..... .++.+. ||.|+.|-.... ...+.........|..++.... ..+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-----------DLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-----------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-----------cccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 3467788766533 333333 788999964321 1111211112347777776553 34555
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe--------CCCceEEEeCCCcEEEeeC
Q 015656 139 TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--------GFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 139 ~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--------G~~~~~~lt~~G~v~~~G~ 203 (403)
..+|.|..|-.....+ ....+. .....|..+.. .....+.-..+|.|..|-.
T Consensus 87 ~~dg~i~iwd~~~~~~------------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEM------------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ETTSCEEEECTTSCSS------------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred cCCCeEEEEeCCCCCc------------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 6789999996432210 001111 11234555532 2335555678899999954
No 80
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=36.01 E-value=2.2e+02 Score=24.78 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=55.8
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceE--EEecCCcEEEEEcCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTL--FLTETGCVYATGLNDFGQLGI 105 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~--~lt~~g~vy~wG~n~~gqlG~ 105 (403)
..++++...|+.|..|-.....+.+ ....|.....-....|..++......+ .-..|+.|..|-....
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~----- 108 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----- 108 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-----
T ss_pred CCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----
Confidence 3466677788889998654322211 011122211112335777776544333 3456889999964321
Q ss_pred CCCCCceecceEeecCcCceEEEecCC--ceeEEEecCCcEEEEEc
Q 015656 106 SENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGK 149 (403)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG~ 149 (403)
.....+......|..++... .+.+.-..|+.|..|-.
T Consensus 109 -------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 109 -------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp -------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred -------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 01122332334666666543 34555567899999964
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=35.44 E-value=2.2e+02 Score=24.65 Aligned_cols=123 Identities=7% Similarity=-0.055 Sum_probs=58.5
Q ss_pred CceEEEEeCC--cceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEe-ecCcCceEEEecCC--ceeEEEecCCcEE
Q 015656 71 HSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-SGLKKEVVQISTGY--HHSSAITVDGELY 145 (403)
Q Consensus 71 ~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v-~~~~~~i~~i~~G~--~~~~~l~~~G~v~ 145 (403)
..|..++... ...++-..+|.|+.|-..... .......+ ......|..++... ...+.-..+|.|+
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQEN---------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEEETTT---------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEecCCC---------cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 3566666543 334445678888888543211 00011111 11233666666543 3445556789999
Q ss_pred EEEcCCCCCCCCCCCCC---cccccCeEEeec--CCceEEEEEeCCC--ceEEEeCCCcEEEeeC
Q 015656 146 MWGKNSNGQLGLGKKAA---KVIPIPTKVECL--SGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 146 ~wG~n~~gqlg~~~~~~---~~~~~p~~~~~~--~~~~i~~i~~G~~--~~~~lt~~G~v~~~G~ 203 (403)
.|--.... +....... ...+....+..+ ....|..++...+ +.+....+|.|..|-.
T Consensus 168 ~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 168 IFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEccccc-ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99743211 10000000 000111222222 2335666666443 4555567888888843
No 82
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.74 E-value=2.4e+02 Score=24.95 Aligned_cols=164 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred EEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc-----eeEEEecCCcEEEEE
Q 015656 74 KALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH-----HSSAITVDGELYMWG 148 (403)
Q Consensus 74 ~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~-----~~~~l~~~G~v~~wG 148 (403)
..++....+.+++|+.|++|..-...--..+..........-..+. ..++|+.+..-.. +.+++|++|.+--.-
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Q ss_pred cCCCCCCCCCCCCC-cccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccc
Q 015656 149 KNSNGQLGLGKKAA-KVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (403)
Q Consensus 149 ~n~~gqlg~~~~~~-~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 227 (403)
-..+ .... ..-..-..+..-...--..+..+.++.+++|++|+++.+-....-..|....
T Consensus 123 l~e~------~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~------------- 183 (323)
T 1wp5_A 123 LKHY------KAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA------------- 183 (323)
T ss_dssp GGGG------CCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-------------
T ss_pred HHHh------hhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-------------
Q ss_pred cceeeccccCceEEEEEecCc---eeEEEecCC
Q 015656 228 TPRLIKELEGVKVKIAAAGFL---HSACIDENG 257 (403)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~G~~---~~~~l~~~G 257 (403)
--..+..-++..|+.+..-.. ..+.++++|
T Consensus 184 GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 184 GVKGMNLKEGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp CEECCCCCTTCCEEEEEEECCTTCEEEEEETTS
T ss_pred CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCC
No 83
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=34.69 E-value=2.1e+02 Score=24.29 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=14.5
Q ss_pred ceEEEecCCceeEEEecCCcE-EEEEc
Q 015656 124 EVVQISTGYHHSSAITVDGEL-YMWGK 149 (403)
Q Consensus 124 ~i~~i~~G~~~~~~l~~~G~v-~~wG~ 149 (403)
.+.-.........+++.+|++ |.++.
T Consensus 137 ~~lv~~~~~~~v~~~d~~G~~~w~~~~ 163 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPNGQLLNSVKL 163 (276)
T ss_dssp CEEEEETTTTEEEEECTTSCEEEEEEC
T ss_pred CEEEEecCCCEEEEECCCCCEEEEEEC
Confidence 454444445556667766764 55554
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.33 E-value=2.5e+02 Score=25.01 Aligned_cols=148 Identities=11% Similarity=-0.042 Sum_probs=82.9
Q ss_pred eEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeec-CcCceEEEecC--CceeEEEecCCcEEEEEc
Q 015656 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (403)
Q Consensus 73 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~-~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~ 149 (403)
+..++-.....++...+|.|+.|-..... ....+.. ....|..++.. ..+.++-..+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466666778888899999999653210 1111221 22356666543 345555667899999964
Q ss_pred CCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccc
Q 015656 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (403)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p 229 (403)
.... ....+. .....|..++...+..+.-..+|.|+.|--...+. ..
T Consensus 164 ~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~ 210 (401)
T 4aez_A 164 ESQT-------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------------QI 210 (401)
T ss_dssp TTCC-------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------EE
T ss_pred cCCe-------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------------ee
Confidence 3210 111111 12345777777666677778899999995432110 01
Q ss_pred eeeccccCceEEEEEec--CceeEEEecCCcEEEEeCCC
Q 015656 230 RLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRA 266 (403)
Q Consensus 230 ~~i~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~ 266 (403)
..+... ...|..++.. ..+.+.-..+|.|..|-...
T Consensus 211 ~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 211 GTLQGH-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eEEcCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 111111 1246666553 33455556789999997654
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=32.96 E-value=2.7e+02 Score=25.00 Aligned_cols=67 Identities=10% Similarity=-0.077 Sum_probs=37.7
Q ss_pred CceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEE
Q 015656 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (403)
Q Consensus 71 ~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG 148 (403)
..|..|+.... +.+.-..||.|..|-.... .....+......+..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 34777775533 3334467889999864321 111222223336666666555555556777888775
Q ss_pred c
Q 015656 149 K 149 (403)
Q Consensus 149 ~ 149 (403)
.
T Consensus 216 ~ 216 (420)
T 4gga_A 216 V 216 (420)
T ss_dssp T
T ss_pred e
Confidence 4
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=32.84 E-value=3.7e+02 Score=26.56 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=69.9
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcc--eEEEecCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~--~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
..+++...++.|..|-..... ....+.. ....|..++..... .+.-..||.|..|-....
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------ 129 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGE-----------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------ 129 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------
T ss_pred CEEEEEeCCCeEEEEECCCCc-----------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------
Confidence 445555567778888654311 1111111 22346666655333 344567888998864211
Q ss_pred CCCCceecceEeecCcCceEEEecCC---ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEE
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~---~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (403)
......+......|..++... ...+.-..+|.|+.|-..... ....+.......+..++
T Consensus 130 -----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-------------~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 130 -----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-------------PNFTLTTGQERGVNYVD 191 (814)
T ss_dssp -----SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-------------CSEEEECCCTTCCCEEE
T ss_pred -----ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------ceeEEecCCCCCEEEEE
Confidence 011222333334666666543 345556778999999643210 11111111112333444
Q ss_pred e----CCCceEEEeCCCcEEEeeC
Q 015656 184 L----GFEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 184 ~----G~~~~~~lt~~G~v~~~G~ 203 (403)
. .....++-..+|.|..|-.
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCEEEEEEC
Confidence 3 3344555667889999943
No 87
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=31.36 E-value=3.4e+02 Score=25.57 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.0
Q ss_pred CCcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEc
Q 015656 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (403)
Q Consensus 79 G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~ 149 (403)
...+.++...+|.|+.|-... ......+......|..++. .+ .+.-..+|.|..|-.
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSS 364 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTT
T ss_pred CCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEc
Confidence 445566677889999985321 1111223333448888888 66 777788999999854
No 88
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=31.11 E-value=2.5e+02 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=12.1
Q ss_pred ceeEEEecCCcEEEEEcC
Q 015656 133 HHSSAITVDGELYMWGKN 150 (403)
Q Consensus 133 ~~~~~l~~~G~v~~wG~n 150 (403)
.|++++. +++||.+|-.
T Consensus 161 ~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceEEEEE-CCEEEEEeCC
Confidence 4555555 7899999853
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=30.76 E-value=3.9e+02 Score=26.09 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=53.4
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcc--eEEEecCCcEEEEEcCCCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGIS 106 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~--~~~lt~~g~vy~wG~n~~gqlG~~ 106 (403)
.++++.+.|+.|..|=....... ...+.....-....|..|+....- .+.-..||.|..|-....
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~-------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~------ 462 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKA-------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG------ 462 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTC-------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred CEEEEEeCCCcEEEEEccCCCcc-------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC------
Confidence 56777778999999965432210 001111111122346666654433 333456888888853211
Q ss_pred CCCCceecceEeecCcCceEEEecCC--ceeEEEecCCcEEEEE
Q 015656 107 ENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWG 148 (403)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG 148 (403)
.....+......|..++... .+.+.-..|+.|..|-
T Consensus 463 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 463 ------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 11222333334676666543 3445556789999994
No 90
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=29.93 E-value=2.6e+02 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=15.9
Q ss_pred ceEEEecC-CceeEEEecCCc-EEEEEc
Q 015656 124 EVVQISTG-YHHSSAITVDGE-LYMWGK 149 (403)
Q Consensus 124 ~i~~i~~G-~~~~~~l~~~G~-v~~wG~ 149 (403)
++.-..++ ....++++.+|+ +|.++.
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 55555555 555666777887 466654
No 91
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=29.41 E-value=2.8e+02 Score=23.95 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=51.8
Q ss_pred ceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCc--eeEEEecCCcEEEE
Q 015656 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMW 147 (403)
Q Consensus 72 ~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~--~~~~l~~~G~v~~w 147 (403)
.|..++.... ..+.-..||.|..|-... + .....+......|..++...+ ..+.-..||.|..|
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~-----------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIAT-G-----------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-T-----------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC-C-----------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 4555554432 333345678888884321 1 011122222235555554433 33444578889888
Q ss_pred EcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCC--ceEEEeCCCcEEEeeC
Q 015656 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~lt~~G~v~~~G~ 203 (403)
-..... ....+.. ....|..++...+ +.+.-..||.|..|--
T Consensus 234 d~~~~~-------------~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 234 DVQHAN-------------LAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp ETTTCC-------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ECCCcc-------------eeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 643210 0111111 1234666665433 4455567889999843
No 92
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=28.92 E-value=5.4e+02 Score=27.16 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=55.3
Q ss_pred CceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCC--ce--eEEEecCCcE
Q 015656 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HH--SSAITVDGEL 144 (403)
Q Consensus 71 ~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~--~~~l~~~G~v 144 (403)
..|..++.... ..+.-..||.|..|-.... .....+......|..++... +. .+.-..||.|
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATG------------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC------------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 35666665433 3444567889999964321 11122222334566665543 32 3334578899
Q ss_pred EEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC--CceEEEeCCCcEEEeeC
Q 015656 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 145 ~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~G~v~~~G~ 203 (403)
..|-..... ....+.. ....|..++... ...+..+.+|.|..|-.
T Consensus 726 ~vwd~~~~~-------------~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 726 KLWDLNQKE-------------CRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp EEEETTSSS-------------EEEEECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred EEEECCCcc-------------hhheecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 999643210 0011111 122455555543 34555678899998843
No 93
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=28.71 E-value=2.7e+02 Score=23.60 Aligned_cols=183 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCC
Q 015656 132 YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGH 211 (403)
Q Consensus 132 ~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~ 211 (403)
..+..+...+++||.+|-.. +......-....|..-....=.++..+-....+..+..-++++|.+|-...
T Consensus 53 r~~~~~~~~~~~l~v~GG~~----~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~----- 123 (301)
T 2vpj_A 53 RRYVASVSLHDRIYVIGGYD----GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG----- 123 (301)
T ss_dssp CBSCEEEEETTEEEEECCBC----SSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCS-----
T ss_pred hccccEEEECCEEEEEcCCC----CCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCC-----
Q ss_pred CCCCcccccccccccccceeeccccCceEEEEE----ecCceeEEEecCCcEEEEe-----------------CCCccee
Q 015656 212 GQESSILGFLRSTSEYTPRLIKELEGVKVKIAA----AGFLHSACIDENGRVYIFG-----------------DRAVDKM 270 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~----~G~~~~~~l~~~G~v~~wG-----------------~n~~gql 270 (403)
.....-..+-.+.......+. .-..|+++.. ++++|++| .+..-++
T Consensus 124 ------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 124 ------------SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp ------------SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred ------------CcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Q ss_pred cccCCCCccCCeEecCCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCCCEEEEecC----CCeEEEEECCcEEEec
Q 015656 271 LFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCG----WKHTAAISEGKILTWG 345 (403)
Q Consensus 271 g~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G----~~h~~~lt~g~v~~wG 345 (403)
.............+.++++|.+| |......................+..- ..|+++..++++|+.|
T Consensus 191 ~~~p~~r~~~~~~~~~~~i~v~G---------G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 191 TPMATKRSGAGVALLNDHIYVVG---------GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp CCCSSCCBSCEEEEETTEEEEEC---------CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCCcccccceEEEECCEEEEEe---------CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
No 94
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=27.36 E-value=3e+02 Score=23.77 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=0.0
Q ss_pred EeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEe--cCCcEEEEEcCCCCCCCCCCC
Q 015656 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGISEN 108 (403)
Q Consensus 31 ~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt--~~g~vy~wG~n~~gqlG~~~~ 108 (403)
+++...|+.|..|-... ..+.....-....|..++......++++ .||.|..| +
T Consensus 157 l~s~s~d~~i~~wd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w------------d 212 (340)
T 1got_B 157 IVTSSGDTTCALWDIET------------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW------------D 212 (340)
T ss_dssp EEEEETTSCEEEEETTT------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE------------E
T ss_pred EEEEECCCcEEEEECCC------------CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE------------E
Q ss_pred CCceecceEeecCcCceEEEecC--CceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeCC
Q 015656 109 IGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (403)
Q Consensus 109 ~~~~~~p~~v~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~ 186 (403)
.........+......|..++.. ....+.-..||.|..|-.... ..............|..++...
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------------QELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCTTCCSCEEEEEECT
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------cEEEEEccCCcccceEEEEECC
Q ss_pred CceEEEe--CCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecCc--eeEEEecCCcEEEE
Q 015656 187 EQSVAVT--GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIF 262 (403)
Q Consensus 187 ~~~~~lt--~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~~~~l~~~G~v~~w 262 (403)
+..++++ .+|.|..| ......+...-.-....|..++...+ +.+.-..||.|..|
T Consensus 281 ~g~~l~~g~~d~~i~vw---------------------d~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVW---------------------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp TSSEEEEEETTSEEEEE---------------------ETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCEEEEECCCCeEEEE---------------------EcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
No 95
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=26.73 E-value=2.2e+02 Score=21.88 Aligned_cols=66 Identities=15% Similarity=-0.002 Sum_probs=40.7
Q ss_pred CceEEEecCC-ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeC-CCceEEEeCCCcEEE
Q 015656 123 KEVVQISTGY-HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-FEQSVAVTGGGKVLS 200 (403)
Q Consensus 123 ~~i~~i~~G~-~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G-~~~~~~lt~~G~v~~ 200 (403)
...+++-|-. .+-+-+..||+|-....... ...-..+... ...++.|.|- ....+++..+|+||.
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~------------~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRSD------------THIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTTC------------GGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCCC------------CceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEee
Confidence 3778888866 67777888999986533211 1111112111 1236777764 467788899999997
Q ss_pred e
Q 015656 201 W 201 (403)
Q Consensus 201 ~ 201 (403)
-
T Consensus 97 s 97 (142)
T 3p6j_A 97 T 97 (142)
T ss_dssp E
T ss_pred c
Confidence 4
No 96
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=26.26 E-value=2.8e+02 Score=23.04 Aligned_cols=149 Identities=11% Similarity=0.176 Sum_probs=0.0
Q ss_pred ceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecC----CceeEEEecCCcEEEEEcCCCCCCCC
Q 015656 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGL 157 (403)
Q Consensus 82 ~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G----~~~~~~l~~~G~v~~wG~n~~gqlg~ 157 (403)
+.++++.+|++|+...... .-..+..-...+..+... .-..++++.+|++|+...
T Consensus 124 ~~i~~~~~g~l~v~~~~~~-------------~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-------- 182 (286)
T 1q7f_A 124 RGVTVDNKGRIIVVECKVM-------------RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-------- 182 (286)
T ss_dssp EEEEECTTSCEEEEETTTT-------------EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG--------
T ss_pred eEEEEeCCCCEEEEECCCC-------------EEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC--------
Q ss_pred CCCCCcccccCeEEeecCCceEEEEEe----CCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccccccccccc-ceee
Q 015656 158 GKKAAKVIPIPTKVECLSGIFTKQAAL----GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT-PRLI 232 (403)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~i~~i~~----G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~-p~~i 232 (403)
...-..+-...+..+..+.. ..-..++++.+|++|.- ..... -..+
T Consensus 183 -------~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~----------------------~~~~~~~i~~ 233 (286)
T 1q7f_A 183 -------RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIA----------------------DNHNNFNLTI 233 (286)
T ss_dssp -------GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEE----------------------ECSSSCEEEE
T ss_pred -------CCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEE----------------------eCCCCEEEEE
Q ss_pred ccccCceEEEEEecCce----eEEEecCCcEEEEeCCCcceecccCCCCccCCeEecCCcEEEeecCCCCCcC
Q 015656 233 KELEGVKVKIAAAGFLH----SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLG 301 (403)
Q Consensus 233 ~~~~~~~i~~i~~G~~~----~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~~g~v~~wG~n~~gqlG 301 (403)
-...+..+..+..+... .++++.+|++|+-..+. .|..|-.......|
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~---------------------~v~v~~~~~~~pvg 285 (286)
T 1q7f_A 234 FTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDY---------------------RLYIYRYVQLAPVG 285 (286)
T ss_dssp ECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTT---------------------EEEEEECSCCCCTT
T ss_pred ECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCC---------------------eEEEEEcccccccC
No 97
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=24.67 E-value=3.5e+02 Score=23.60 Aligned_cols=181 Identities=8% Similarity=0.015 Sum_probs=91.7
Q ss_pred eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCc-cCCCceEEEEeCC---cceEEEecCCcEEEEEcCCCCCCC
Q 015656 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSA-FEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLG 104 (403)
Q Consensus 29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG 104 (403)
.++++...++.|..|=.... .....+.. -....|..++... ...+.-..||.|..|-... .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~--- 151 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S--- 151 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C---
T ss_pred CEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C---
Confidence 45666667777888865421 11122221 1334677777644 3445557889999996431 0
Q ss_pred CCCCCCceecceEeecC---cCceEEEec--CCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceE
Q 015656 105 ISENIGYSLEPLRISGL---KKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (403)
Q Consensus 105 ~~~~~~~~~~p~~v~~~---~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i 179 (403)
....+... ...|..++. .....+.-..+|.|+.|-.. ++ ....+. .....|
T Consensus 152 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~------------~~~~~~-~h~~~v 207 (383)
T 3ei3_B 152 ---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH------------EIFKEK-LHKAKV 207 (383)
T ss_dssp ---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC------------EEEEEE-CSSSCE
T ss_pred ---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC------------EEEEec-cCCCcE
Confidence 11111111 123444443 34455566778899998642 10 011111 122357
Q ss_pred EEEEeCCC---ceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecC---ceeEEE
Q 015656 180 KQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACI 253 (403)
Q Consensus 180 ~~i~~G~~---~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~~~~l 253 (403)
..++...+ ..+.-..||.|..|-...... ...+..... ....|..++... ...++.
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----------------KNSYIAEMP-HEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----------------TTCEEEEEE-CSSCEEEEEECTTTSCEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----------------ccceEEEec-CCCceEEEEEcCCCCCEEEEE
Confidence 77766544 344456788899885432100 001111111 122566666543 455556
Q ss_pred ecCCcEEEEeCCC
Q 015656 254 DENGRVYIFGDRA 266 (403)
Q Consensus 254 ~~~G~v~~wG~n~ 266 (403)
..+|.|..|-...
T Consensus 270 ~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 270 DQRNEIRVYSSYD 282 (383)
T ss_dssp ESSSEEEEEETTB
T ss_pred cCCCcEEEEECCC
Confidence 6789999996543
No 98
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=23.78 E-value=1e+02 Score=27.34 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=12.7
Q ss_pred CCceEEEeCCCcEEEeeC
Q 015656 186 FEQSVAVTGGGKVLSWGA 203 (403)
Q Consensus 186 ~~~~~~lt~~G~v~~~G~ 203 (403)
..|++++ -+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3566666 5789999985
No 99
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=22.49 E-value=4.2e+02 Score=23.70 Aligned_cols=55 Identities=7% Similarity=0.110 Sum_probs=30.5
Q ss_pred eeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeC--CCceEEEeCCCcEEEee
Q 015656 134 HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 134 ~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~G~v~~~G 202 (403)
+.+.-..||.|..|-.... + ....+.. ....|..++.. ....+.-..||.|..|-
T Consensus 310 ~l~sgs~D~~i~iwd~~~~-~------------~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTG-M------------CLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp EEEEEETTSEEEEEETTTT-E------------EEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCC-c------------eEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4455567899999964321 0 0011111 12246566554 34555667889999994
No 100
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=22.10 E-value=3.5e+02 Score=22.71 Aligned_cols=138 Identities=11% Similarity=0.129 Sum_probs=69.0
Q ss_pred eeEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCc--ceEEEecCCcEEEEEcCCCCCCCC
Q 015656 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGI 105 (403)
Q Consensus 28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG~ 105 (403)
..++++...++.|..|..... + ....+.. ....|..++.... ..+.-..||.|..|-.....
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~-~----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---- 98 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDG-K----------FEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---- 98 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTC-C----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----
T ss_pred CCEEEEeeCCCeEEEEeCCCc-c----------cchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----
Confidence 345666667888888865321 1 1111211 2234666665533 33344578889998543210
Q ss_pred CCCCCceecceEeecCcCceEEEecCC--ceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEE
Q 015656 106 SENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (403)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (403)
....+......|..++... ...+.-..+|.|..|-..... ....+. .....|..++
T Consensus 99 --------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~-~~~~~v~~~~ 156 (312)
T 4ery_A 99 --------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLP-AHSDPVSAVH 156 (312)
T ss_dssp --------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------------EEEEEC-CCSSCEEEEE
T ss_pred --------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------------EEEEec-CCCCcEEEEE
Confidence 1112222233455544433 344445678899998542110 001111 1123466666
Q ss_pred eCCC--ceEEEeCCCcEEEeeC
Q 015656 184 LGFE--QSVAVTGGGKVLSWGA 203 (403)
Q Consensus 184 ~G~~--~~~~lt~~G~v~~~G~ 203 (403)
...+ ..+.-..+|.|..|-.
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEET
T ss_pred EcCCCCEEEEEeCCCcEEEEEC
Confidence 5433 3444567888888853
No 101
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=21.18 E-value=2.8e+02 Score=23.76 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred CcceEEEecCCcEEEEEcCCCCCCCCCCCCCceecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCC
Q 015656 80 GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK 159 (403)
Q Consensus 80 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~ 159 (403)
..|++++ .+++||++|-...+.--...-........... .+..+-....+..+...+++||.+|-.....
T Consensus 140 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~----- 209 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK----ELAPMQTARSLFGATVHDGRIIVAAGVTDTG----- 209 (315)
T ss_dssp BSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE----ECCCCSSCCBSCEEEEETTEEEEEEEECSSS-----
T ss_pred cceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE----ECCCCCCchhceEEEEECCEEEEEeccCCCC-----
Q ss_pred CCCcccccCeEEeecCCceEEEEE---eCCCceEEEeCCCcEEEee
Q 015656 160 KAAKVIPIPTKVECLSGIFTKQAA---LGFEQSVAVTGGGKVLSWG 202 (403)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~i~~i~---~G~~~~~~lt~~G~v~~~G 202 (403)
...-..+..+...+...+. .......+..-++++|.+|
T Consensus 210 -----~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 210 -----LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp -----EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred -----ccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
No 102
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=20.25 E-value=3.9e+02 Score=22.53 Aligned_cols=17 Identities=6% Similarity=-0.039 Sum_probs=12.4
Q ss_pred CCeEEEEECCcEEEecC
Q 015656 330 WKHTAAISEGKILTWGW 346 (403)
Q Consensus 330 ~~h~~~lt~g~v~~wG~ 346 (403)
..|++++.++++|+.|-
T Consensus 196 ~~~~~~~~~~~iyv~GG 212 (302)
T 2xn4_A 196 SGAGVGVLNNLLYAVGG 212 (302)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred ccccEEEECCEEEEECC
Confidence 34666555999999983
Done!