Your job contains 1 sequence.
>015657
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID
QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK
DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS
GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA
NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER
EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE
DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015657
(403 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 1741 2.4e-179 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 930 2.1e-93 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 867 1.3e-88 2
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 875 1.4e-87 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 816 2.5e-81 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 806 2.9e-80 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 788 2.3e-78 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 782 1.0e-77 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 775 5.5e-77 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 773 9.0e-77 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 770 1.9e-76 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 768 3.1e-76 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 755 7.3e-75 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 718 6.1e-71 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 716 9.9e-71 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 681 4.7e-70 2
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 692 3.5e-68 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 611 1.3e-59 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 566 4.2e-57 2
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 553 1.9e-53 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 551 3.0e-53 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 551 3.0e-53 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 551 3.0e-53 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 548 6.3e-53 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 548 6.3e-53 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 521 2.9e-52 2
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 534 1.9e-51 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 531 4.0e-51 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 528 8.3e-51 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 500 7.7e-48 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 500 7.7e-48 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 490 8.8e-47 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 485 3.0e-46 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 470 1.2e-44 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 460 1.3e-43 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 435 5.9e-41 1
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 428 3.3e-40 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 428 3.3e-40 1
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 397 6.3e-37 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 396 8.0e-37 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 388 5.7e-36 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 385 1.2e-35 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 381 3.1e-35 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 377 8.3e-35 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 368 7.4e-34 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 365 1.5e-33 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 360 5.2e-33 1
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 356 1.4e-32 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 354 2.3e-32 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 341 5.4e-31 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 309 1.3e-27 1
TAIR|locus:2118701 - symbol:AT4G30600 species:3702 "Arabi... 303 3.8e-26 1
WB|WBGene00009521 - symbol:F38A1.8 species:6239 "Caenorha... 261 5.1e-20 1
DICTYBASE|DDB_G0277377 - symbol:srpR "signal recognition ... 253 4.7e-19 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 237 3.5e-17 1
UNIPROTKB|Q3V8C7 - symbol:flhF "Flagellar biogenesis prot... 232 6.1e-17 1
TIGR_CMR|GSU_3055 - symbol:GSU_3055 "flagellar biosynthet... 232 6.1e-17 1
ZFIN|ZDB-GENE-030219-11 - symbol:srpr "signal recognition... 234 8.8e-17 1
MGI|MGI:1914648 - symbol:Srpr "signal recognition particl... 233 1.1e-16 1
RGD|1311504 - symbol:Srpr "signal recognition particle re... 233 1.1e-16 1
UNIPROTKB|P08240 - symbol:SRPR "Signal recognition partic... 231 1.9e-16 1
UNIPROTKB|F1NXV4 - symbol:SRPR "Uncharacterized protein" ... 231 1.9e-16 1
ASPGD|ASPL0000006202 - symbol:AN6627 species:162425 "Emer... 230 2.5e-16 1
UNIPROTKB|F1S754 - symbol:SRPR "Uncharacterized protein" ... 229 3.2e-16 1
UNIPROTKB|Q3MHE8 - symbol:SRPR "Signal recognition partic... 229 3.2e-16 1
UNIPROTKB|J9NTJ9 - symbol:SRPR "Signal recognition partic... 227 5.5e-16 1
UNIPROTKB|F1PLH3 - symbol:SRPR "Signal recognition partic... 227 5.5e-16 1
UNIPROTKB|J9P788 - symbol:SRPR "Signal recognition partic... 227 7.7e-16 1
UNIPROTKB|P06625 - symbol:SRPR "Signal recognition partic... 221 2.7e-15 1
CGD|CAL0003010 - symbol:orf19.3952 species:5476 "Candida ... 203 2.1e-13 1
POMBASE|SPBC3B9.03 - symbol:SPBC3B9.03 "signal recognitio... 202 2.8e-13 1
UNIPROTKB|Q48GG0 - symbol:flhF "Flagellar biosynthesis pr... 194 1.4e-12 1
UNIPROTKB|Q81SE2 - symbol:BA_1718 "Putative flagellar bio... 181 5.2e-12 1
TIGR_CMR|BA_1718 - symbol:BA_1718 "flagellar biosynthetic... 181 5.2e-12 1
SGD|S000002700 - symbol:SRP101 "Signal recognition partic... 142 1.6e-11 2
UNIPROTKB|Q8ECD1 - symbol:flhF "Flagellar polar localizat... 182 3.5e-11 1
TIGR_CMR|SO_3212 - symbol:SO_3212 "flagellar biosynthetic... 182 3.5e-11 1
UNIPROTKB|F1MNJ2 - symbol:SRPR "Signal recognition partic... 178 1.6e-10 1
UNIPROTKB|Q722L6 - symbol:LMOf2365_0717 "Putative flagell... 168 1.0e-09 1
TIGR_CMR|CHY_1010 - symbol:CHY_1010 "flagellar biosynthes... 166 1.2e-09 1
UNIPROTKB|Q9KQD2 - symbol:VC_2068 "Flagellar biosynthetic... 166 2.6e-09 1
TIGR_CMR|VC_2068 - symbol:VC_2068 "flagellar biosynthetic... 166 2.6e-09 1
TIGR_CMR|CJE_0061 - symbol:CJE_0061 "flagellar biosynthet... 161 8.9e-09 1
UNIPROTKB|Q485K6 - symbol:flhF "Flagellar biosynthetic pr... 161 9.8e-09 1
TIGR_CMR|CPS_1517 - symbol:CPS_1517 "flagellar biosynthet... 161 9.8e-09 1
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 1741 (617.9 bits), Expect = 2.4e-179, P = 2.4e-179
Identities = 344/403 (85%), Positives = 374/403 (92%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521
Query: 361 DALKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGGS 403
DALK+EQKAPPGTA +FV+ AS++P PRGFG G+
Sbjct: 522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 190/347 (54%), Positives = 252/347 (72%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
MG ++L A S PT+I+L GLQG GKTT +AKLA LKKQGK +LVA DVYRPAAI
Sbjct: 87 MGKTNAKLNDAGSPPTIIMLVGLQGAGKTTTAAKLAYLLKKQGKKPLLVAADVYRPAAIK 146
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LG+ + VPV+T G E P IAK + AK + VI+DTAGRL I++ +MDELK
Sbjct: 147 QLQVLGDTIDVPVFTMG-EQSPVDIAKASINFAKSNLKNYVIIDTAGRLHINEELMDELK 205
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K V++P E+LLVVDAMTGQ+A + +FN E+G+TG ILTKLDGD++GGAALSVK V+
Sbjct: 206 KIKDVVHPHEILLVVDAMTGQDAVNVAKSFNDELGLTGVILTKLDGDTKGGAALSVKAVT 265
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G PIK G GE++E+LEPFYPDRMA RILGMGDVL+ +EKA+E + E A++MQ+K+ S
Sbjct: 266 GCPIKFAGMGEKIENLEPFYPDRMASRILGMGDVLTLIEKAKEALDAEKAQKMQEKLKSR 325
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
FD DFL + + +MG + +++GMIPGMGK+ EK LK +EA+I +MTPEER
Sbjct: 326 EFDLEDFLDSMQQIKKMGPLEQLLGMIPGMGKVKDIAGMVDEKELKHIEAIIYSMTPEER 385
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
KPE++ S R+KR+A+ SG + Q+V++L+ Q QM+ MK G+
Sbjct: 386 RKPEIIDGS--RKKRIAKGSGTSIQEVNRLLKQFEQMKKLMKQFGGM 430
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 867 (310.3 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 172/353 (48%), Positives = 246/353 (69%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRPAAI 59
+G + +E++ + PT+I++ GLQG GKTT + KLAN LKK+ + +++A D+YRPAAI
Sbjct: 87 LGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAI 146
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
DQL LG+Q+ VPV+ GTEV +I +QGLE+A+ + D V++DTAGRLQID+ +M+EL
Sbjct: 147 DQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNEL 206
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
+DVK + P E+LLVVDAM GQEAA + FN ++ +TG ILTK+DGD+RGGAALSV+ +
Sbjct: 207 RDVKALAQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHI 266
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ A EM +K+
Sbjct: 267 TGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDMLTLIEKASQEYDEQKALEMAEKMRE 326
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTP 297
FDFNDF+ Q V MG M ++ MIPGM PA ++ E+ + A++ +MTP
Sbjct: 327 NTFDFNDFIDQLDQVQNMGPMEDLLKMIPGMAN-NPALQNMKVDERQIARKRAIVSSMTP 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
EERE P+LL +P RR+R+A SG T +V++ + Q + M+ GVM G
Sbjct: 386 EERENPDLL--NPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQ---GVMSG 433
Score = 37 (18.1 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 341 MKNLMGVMEGGSLPALSNLEDA 362
M L G+M G +P LS L A
Sbjct: 461 MSALEGMMGQGGMPDLSALGGA 482
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 171/352 (48%), Positives = 250/352 (71%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
MGGE S++ A PTVI++ GLQG GKTT + KLAN L KK + MLVA D+YRPAAI
Sbjct: 87 MGGEQSKIAIANKPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAI 146
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL LG+Q+ +PV++ G +V P +IAKQ + +AK+ + D V++DTAG L ID+ +MDEL
Sbjct: 147 KQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDEL 206
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
VK V P E+ LVVDAMTGQ+A + +F+ ++G+TG +LTKLDGD+RGGAALS+K V
Sbjct: 207 AKVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAV 266
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+ PIK G GE+++ LE F+P+RMA RILGMGDVL+ +EKAQ + +E A+E+++K+ +
Sbjct: 267 TNTPIKFAGMGEKLDALEAFHPERMASRILGMGDVLTLIEKAQATVDEEKAKELEQKMRT 326
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA-EKSLKIMEAMIEAMTPE 298
+F +DFL+Q V ++G + ++GM+PG KI + + EK + +EA+I +MT
Sbjct: 327 LSFTLDDFLEQLGQVRQLGPLDELLGMLPGANKIKGLKNAQVDEKQIGHIEAIIRSMTKL 386
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
ERE+PE++ S R+KR+A+ SG T Q++++L+ Q M+ MK + G+ +G
Sbjct: 387 EREQPEIINAS--RKKRIAKGSGTTVQEINRLIKQFDDMKKMMKTMTGMQKG 436
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 172/373 (46%), Positives = 240/373 (64%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++
Sbjct: 86 LGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVN 145
Query: 61 QLVILGEQVGVPVYT----AGTEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
QL ++GE+ GVPV+ A E P +A GL EA+ K+ DVVIVDTAGRL ID+
Sbjct: 146 QLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDE 205
Query: 114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAA
Sbjct: 206 ELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 265
Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
LSV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 266 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEA 325
Query: 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 326 AAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIR 385
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSL 353
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G G +
Sbjct: 386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGI 440
Query: 354 PALSNLEDALKSE 366
P + KS+
Sbjct: 441 PGIGRKSATRKSK 453
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 175/376 (46%), Positives = 241/376 (64%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
+ER KPE++ S R++R+A G Q V++L+ Q M+ MK + +GG +
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMK---KGGMAKMM 439
Query: 357 SNLEDALKSEQKAPPG 372
+++ + PPG
Sbjct: 440 RSMKGMM------PPG 449
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/349 (46%), Positives = 240/349 (68%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI 59
+G E+ E+ P VI++AGLQG GKTT AKLA +L + Q KS M+ + DVYRPAAI
Sbjct: 86 LGDELVEINLNAQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVASADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L Q+ + + KP +IAK L++A+K+ +DV+I+DTAGRL ID +M+E+
Sbjct: 146 QQLETLASQINAIFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLHIDNVLMEEM 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K + + PTE+LLVVD+M GQ+AA + +FN + +TG ILTKLDGD+RGGAALS++ +
Sbjct: 206 KAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKLDGDTRGGAALSMRMI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+ KPIK VG GE+++ LEPF+P+RMA RILGMGD++S VE+AQ + Q+ A ++ KK+
Sbjct: 266 TQKPIKFVGVGEKIDALEPFHPNRMASRILGMGDIVSLVEEAQRKVDQKQAAKIAKKLQK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTP 297
N FDF+DFL Q + + +MG M ++G +PGMG++ A +K L M+A+I++MT
Sbjct: 326 GNRFDFDDFLAQLQQMKKMGGMQSLLGKLPGMGQLPKGASAFLDDKLLVKMQAIIQSMTL 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
+ER P L+ S R++R+++ SG Q V++L+ Q QM+ MK + G
Sbjct: 386 KERRFPALINGS--RKRRISKGSGTGLQDVNKLLKQFVQMQKMMKRMKG 432
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 165/356 (46%), Positives = 231/356 (64%)
Query: 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 61
GGE + L A P I++ GLQG GKTT KLA LK Q + +LV DVYRPAAI+Q
Sbjct: 88 GGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPADVYRPAAIEQ 147
Query: 62 LVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 121
L LG Q+ V V+ + + P I ++ L A DVVI+DTAGR QID+ +M+EL
Sbjct: 148 LKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQIDEYLMNELVR 207
Query: 122 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
+K P E+L V DAMTGQEA + + FN + ITG +LTKLDGD++GGAALS++ V+G
Sbjct: 208 IKEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDGDAKGGAALSIRAVTG 267
Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241
KP+KLVG GE+++ LE F+ DR+ RILGMGD+L+ VEKAQ ++AE +Q+K+ +
Sbjct: 268 KPVKLVGVGEKLDALEVFHADRLVSRILGMGDILTLVEKAQATFDSQEAERLQQKLKKSQ 327
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQ-VREAEKSLKIMEAMIEAMTPEE 299
FD DF Q + + +MGS+ ++GMIPG+GK + Q + +E+ LK +EA+I +MTP E
Sbjct: 328 FDLEDFRNQLQQIKKMGSIESILGMIPGVGKAMKQLQGAQPSERELKRIEAIIGSMTPAE 387
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-----GVMEG 350
R ++ S RR R+A+ SG T Q+V+QL+ + + + MK L G+M G
Sbjct: 388 RANHAIINGS--RRLRIAKGSGTTVQEVNQLLKRFTEAQKMMKQLQKLGPKGLMRG 441
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 166/374 (44%), Positives = 239/374 (63%)
Query: 3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAID 60
GE ++ L A P V+++AGLQG GKTT AKL L+ + KS ++V+ DVYRPAAI
Sbjct: 87 GEANQALDLATQPPAVVMMAGLQGAGKTTSVAKLGKLLRTRHKKSVLVVSADVYRPAAIK 146
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L +V V + + KP IAK + AK K +DVVI+DTAGRL +D+AMMDE+K
Sbjct: 147 QLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAKLKFIDVVILDTAGRLHVDEAMMDEIK 206
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+ L P E L VVDAMTGQ+AA FN + +TG ILTK+DGD+RGGAALS++ ++
Sbjct: 207 ALHAALKPIETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHIT 266
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI-MS 239
GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E+ + + +E A ++ K+
Sbjct: 267 GKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEEVERGVDKEKAMKLASKVKQG 326
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAEKSLKIMEAMIEAMT 296
+FD DF +Q + + MG M +I +PG+G++ P AQ+++ K + MEA+I +MT
Sbjct: 327 GSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQLPPDALAQIQDG-KMTRQMEAIINSMT 385
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
+ER+ P+L+ S R++R+A SG Q V++L+ Q QM+ MK + +GG +
Sbjct: 386 AKERKNPDLIKGS--RKRRIAAGSGTEIQDVNRLLKQFTQMQKMMKKMSA--KGGMQKMM 441
Query: 357 SNLEDALKSEQKAP 370
+ + K P
Sbjct: 442 RGMRGMMPGGMKFP 455
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 169/354 (47%), Positives = 232/354 (65%)
Query: 3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAID 60
GE +E L A P VIL+AGLQG GKTT KL+ LK++ K +LV + DVYRPAAI
Sbjct: 87 GESNEALNLAAQPPAVILMAGLQGAGKTTSVGKLSKLLKERDKKKVLVVSADVYRPAAIK 146
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L +GV + + + KP IA ++ AKKK DV+IVDTAGRL ID+ MM E++
Sbjct: 147 QLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRLAIDEQMMAEIQ 206
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+ + +NP E L VVDAMTGQ+AA F + +TG ILTK+DGD+RGGAALSV+ ++
Sbjct: 207 ALHKAINPVETLFVVDAMTGQDAADTAKAFGDALPLTGVILTKVDGDARGGAALSVRHIT 266
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E Q + QE AE++ KK
Sbjct: 267 GKPIKFIGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRNVDQEKAEKLAKKFKEK 326
Query: 241 N-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTP 297
FD DF +Q + MG M ++ +PGM ++ PA +++ ++ K MEA+I +MT
Sbjct: 327 KGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL-PADMKDKVDDRVFKQMEAIINSMTM 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-GVMEG 350
+ER+ P+L+ S R+KR+A SG Q V++L+ Q QM+ MK + G M+G
Sbjct: 386 KERQNPDLIKGS--RKKRIAAGSGTQVQDVNRLLKQFTQMQKMMKKMQQGGMKG 437
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 170/392 (43%), Positives = 240/392 (61%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
P IL+ GLQG GKTT +AKLA LK ++GK ++ + DVYRPAA+DQL +LG Q+GV
Sbjct: 101 PAPILMVGLQGGGKTTTTAKLAKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIGVDT 160
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
KP IAK+ ++A DV ++DTAGRL ID+ +M E++DV+ V+ P E LL
Sbjct: 161 LPIVPGQKPVDIAKRAKQQAMMGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVVTPRETLL 220
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
VVD +TGQ A + F+ +IGI+G +LT++DGD RGGAALS++ V+GKPI+ VG GE+M
Sbjct: 221 VVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKM 280
Query: 194 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRT 253
+ LE F P+R+AGRILGMGD+++ VEKAQE ++ E AE M K++ F+ ND Q
Sbjct: 281 DALETFEPERIAGRILGMGDIVALVEKAQETIEMEQAERMMKRMAKGQFNMNDLKMQLEQ 340
Query: 254 VARMGSMSRVIGMIPGMGKITPAQVREA---EKSLKIMEAMIEAMTPEEREKPELLAESP 310
+ +MG M ++GM+PGMGK+ Q+ A ++ LK A+I++MT +ER P LL S
Sbjct: 341 MIQMGGMQGMMGMLPGMGKMAK-QMDAAGLDDRVLKQQIALIQSMTKKERANPALLQAS- 398
Query: 311 VRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAP 370
R+KR+A SG +++L+ QM MK MG M G + LK K
Sbjct: 399 -RKKRIAAGSGMEVSDLNKLLKMHRQMADMMKK-MGKMGKGGM---------LKQAMKGM 447
Query: 371 PGTAXXXXXXXXXXQFVDPASTRPSPRGFGGG 402
G + +DP + + + GGG
Sbjct: 448 FGKGGTPADMAEMAKGMDPKALEAAAKAMGGG 479
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 165/374 (44%), Positives = 242/374 (64%)
Query: 3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAID 60
GEV+E L + P V+L+AGLQG GKTT AKLA +L +++ K ++V+ DVYRPAAI
Sbjct: 87 GEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLAKFLTEREKKKVLVVSADVYRPAAIK 146
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L E++ V + + + KP IA ++ AKK DV+IVDTAGRL ID+ MM E++
Sbjct: 147 QLETLAEEISVGFFPSDIKQKPIDIANAAIDHAKKNFYDVLIVDTAGRLHIDENMMAEIQ 206
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+ +NP E L VDAMTGQ+AA FN + +TG ILTK DGD+RGGAALS++ ++
Sbjct: 207 QLHAAINPIETLFTVDAMTGQDAANTAKAFNDALPLTGIILTKTDGDARGGAALSIRHIT 266
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPIK +G GE++E LEPF+PDR+A RILGMGDVLS VE+ ++ + ++ AE++ K+ S
Sbjct: 267 GKPIKFMGVGEKIEALEPFHPDRIASRILGMGDVLSLVEEIEQKVDRKQAEKLANKVKSG 326
Query: 241 N-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPE 298
F DF Q + MG M+ ++ +PGMG ++ + + + + MEA+I +MTP
Sbjct: 327 KGFSLEDFRDQLVQMKSMGGMTGMMDKLPGMGNMSGKIKDQMDDKITVQMEAIINSMTPG 386
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSN 358
ERE+P+++ S R++R+A SG Q V++L+ Q QM+ MK + G +GG + +
Sbjct: 387 ERERPDIIKGS--RKRRIAVGSGTQIQDVNKLLKQFTQMQKMMKKMSG--KGGMKKMMRS 442
Query: 359 LEDALKSEQKAPPG 372
++ + PPG
Sbjct: 443 MQGMM------PPG 450
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 162/344 (47%), Positives = 231/344 (67%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPI G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A + K++
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL--- 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER
Sbjct: 321 --SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEER 374
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 375 KDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 150/349 (42%), Positives = 222/349 (63%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E EL +K +VI++ GLQGVGKTT +AKLA LK + K ++ + DVYRPAA
Sbjct: 86 LGSEKCELDISKPL-SVIMMVGLQGVGKTTTTAKLALKLKNKKKEVVMASLDVYRPAAQK 144
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL ILG+Q+ V P I K+ ++ A++ N DV+I+DTAGRL +D+ MM+EL+
Sbjct: 145 QLEILGKQIDVQTLPIIENQAPIDIVKRAMDNAQQANCDVLILDTAGRLHVDQVMMEELR 204
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K + +P+EV+LVVD+M GQ+A + +FN IGITG ILT++DGDSRGGAALS+K
Sbjct: 205 AIKDLTSPSEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGDSRGGAALSMKMSV 264
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G PIK + GE++ DL+ FYP+R+A RIL MGDV+S VEKA E + + +EMQKK
Sbjct: 265 GSPIKFIANGEKLSDLDDFYPERIAKRILNMGDVVSLVEKATEAVGKHAIDEMQKKAQKG 324
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPE 298
FD ND ++Q + + ++G ++ ++ +P G QV ++ + A++ +MT +
Sbjct: 325 KFDLNDLVQQLKALNKLGGIANILKFMPNFGADVKRQVSGIANDSRVKQYIAIVNSMTKK 384
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
ERE P++L + R+ R+A+ SG ++ L+ Q QM M V
Sbjct: 385 ERENPKIL--NGARKARIAKGSGVHVNVINMLIKQFNQMSSLMNKFSKV 431
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 146/350 (41%), Positives = 228/350 (65%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+ G+ VFA PTV+L+AGLQG GKTT + KLANYLK + K ++ A D+ R AA++
Sbjct: 81 VNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVE 140
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L E + ++ E P ++AK+ L++A+ VDV++VDTAGRL ID+A+M+ELK
Sbjct: 141 QLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELK 200
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
VK VLNP E+ V DAM+GQ+ +FN + I+G IL+K D D++GG AL + +
Sbjct: 201 AVKDVLNPDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQI 260
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G P++ +G GE++ DLE F PDR+ RI+G GD+ + EK V+ +++A+++ +KI
Sbjct: 261 GIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLATLAEKTAAVIDEKEAKKLNQKIKKG 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAE----KSLKIMEAMIEAMT 296
F+FNDFL Q ++ ++GSM +IGMIPG+G + A V++ + K + ++AMI +MT
Sbjct: 321 EFNFNDFLNQMESIKKLGSMKSLIGMIPGLGGMANA-VKDIDLDNSKEIIHIKAMISSMT 379
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
P+ERE P+LL + R++R+A+ +G ++ +V++ + Q K G
Sbjct: 380 PKERENPDLLNNA--RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSG 427
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 681 (244.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 151/354 (42%), Positives = 214/354 (60%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAI 59
+G E + + P VI++ GLQG GKTT + K+A L + K +L+A D RPAA
Sbjct: 86 LGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQ 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
+QL LG Q GV P+ IA + ++ AK DVVI+DTAGR ID+ +M E+
Sbjct: 146 EQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEM 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
D+K+ NP E+LLV D++TGQ+A L F+ +GITG +LT++DGD RGGAALS++ V
Sbjct: 206 ADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAV 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIKL+G GERM +L+ F+P R+A RILGMGD++S VEKA E + E A M +K+
Sbjct: 266 TGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARSMAEKMAK 325
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTP 297
FD ND Q + +MG M ++G++PGM K A +K A+I +MT
Sbjct: 326 GKFDLNDLADQLGQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMFDRQIAIISSMTK 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 351
ER P++L S R+KR+A SG ++++L+ M MK + G +GG
Sbjct: 386 AERANPDILKHS--RKKRIAAGSGTDAAEINKLLKMHRGMADMMKAMGGKGKGG 437
Score = 47 (21.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 345 MGVMEGGSLPALSNLEDA-LKSEQK 368
+G M GG +P LSN++ L++ QK
Sbjct: 452 LGGMMGGGMPDLSNIDPKQLEALQK 476
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 150/339 (44%), Positives = 215/339 (63%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E S L P VI++ GLQGVGKTT + K+A LKK K+ ++ + DVYRPAA +
Sbjct: 86 LGNEKSALDLKGKIPAVIMMVGLQGVGKTTNTVKVALRLKKDSKNPLVASLDVYRPAARE 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +L + VG+ E KP IAK+ + EA+ K DVV++DTAGRL I++ M+DELK
Sbjct: 146 QLKVLADGVGIDSLPIVEEQKPLDIAKRAMREARLKGHDVVLLDTAGRLHINQDMIDELK 205
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
VK+ ++P E++LVVD++ GQ+A +V FN E+GITG I T+ DGD RGGA LS+K V+
Sbjct: 206 CVKKEVSPAEIVLVVDSLMGQDAVTMVRKFNEELGITGTIFTRADGDPRGGAILSMKLVA 265
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G PIK + GE+ EDL+ FYPDR+A R+L MGDV S VEKA E + ++ E+Q K
Sbjct: 266 GCPIKFMSTGEKPEDLDDFYPDRIARRMLNMGDVASLVEKAVEAVGKDTINELQAKAKKG 325
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-ME-AMIEAMTPE 298
FD +D + Q + + +MG ++ ++ IP G +V K+ M A+I +MT +
Sbjct: 326 KFDLDDLVIQLKALNKMGGIANIMKFIPAFGNDIKRKVAGIADDSKVDMYIAIINSMTKQ 385
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 337
ER PE+L + R+ R+A+ +G V+ L+ Q QM
Sbjct: 386 ERANPEIL--NGARKARIAKGAGVKVDAVNALLKQYNQM 422
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 135/345 (39%), Positives = 217/345 (62%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAI 59
+GGE + F K +++ GLQGVGKTT +AKLA ++K+ K +L++ D+YRPAA
Sbjct: 86 LGGESQKFEFPKFGKQILMFVGLQGVGKTTTAAKLALLIRKKFKKNILLSSVDIYRPAAR 145
Query: 60 DQLVILGEQVGV---PVYTAGTEVKPSQIAKQGLE--EAKKKNVDVVIVDTAGRLQIDKA 114
QL IL +Q+ V P+ G +V I K+ L+ + DV++VDTAGR QID
Sbjct: 146 KQLEILAKQIDVDTVPI-VEGEDV--DAIVKKTLDLFNNSHEGYDVLMVDTAGRSQIDSV 202
Query: 115 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 174
+M+ELK +K L P+E+ V+DAM GQ++ + TF+ EIG TG I+++LD D+R G+ L
Sbjct: 203 LMEELKVIKNRLQPSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIVSRLDSDARVGSVL 262
Query: 175 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 234
SV++ G PI+ G GER+ DLE F+P+RMAGRI+G GD+ S VE A + +E ++
Sbjct: 263 SVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGDIASLVEYASSEVGEERIGSIR 322
Query: 235 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 294
K+I + FD++D + Q +++ ++G +++++ IPG+ K+ P + + +LK AMI +
Sbjct: 323 KRIEAGKFDYDDLVLQLKSIDKLGGIAKLLRFIPGINKV-PTEHLVDDTTLKKNLAMIGS 381
Query: 295 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRV 339
MT ER + + +S R+ R+A +G +V++L+ + R+
Sbjct: 382 MTKRERACLDSINQS--RKSRIASGAGVKIYEVNKLIKNFEKARL 424
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 566 (204.3 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 126/343 (36%), Positives = 187/343 (54%)
Query: 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 61
G E V K + +I+ GLQG GKTT KLA Y K+G LV D +R A DQ
Sbjct: 96 GSEEKAFVPKKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQ 155
Query: 62 LVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 121
L + +P Y + TE P+++A++G+ + KK+ D++IVDT+GR ++ + E+ +
Sbjct: 156 LKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIE 215
Query: 122 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
+ V+ P + ++V+DA GQ A F ILTK+DG +RGG A+S +
Sbjct: 216 ISNVIKPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATN 275
Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241
PI +G GE + DLE F P ++LG+GD+ S E+ Q V +EDA+ + I
Sbjct: 276 TPIIFIGTGEHIHDLEKFSPKSFISKLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGK 335
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMIEAMTPEE 299
F DF KQ +T+ +MG +S + MIPGM + QV E E S K+ M ++++MT EE
Sbjct: 336 FTLLDFKKQMQTIMKMGPLSNIAQMIPGMSNMMN-QVGEEETSQKMKKMVYVLDSMTKEE 394
Query: 300 REKP-ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 341
E + E P R RVA+ SG + +V ++ Q QM RM
Sbjct: 395 LESDGRMFIEEPTRMVRVAKGSGTSVFEVEMILMQQ-QMMARM 436
Score = 39 (18.8 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 323 TEQQVSQLVAQLFQMRVRMKNLMGVMEGG 351
T Q + Q +L Q M+N+M + GG
Sbjct: 479 TPQMMQQAQQKLKQNPGLMQNMMNMFGGG 507
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 120/366 (32%), Positives = 205/366 (56%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSLFEEMLQVSNAVQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D EE+ K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEELIDKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEE---REKPEL 305
+ + +MG +++GMIPG G ++ +E+ LK + ++++M +E ++ +L
Sbjct: 336 FQNIMKMGPFGQIMGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDNKDGAKL 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPALSNLEDA 362
++ P R +RVA+ SG + V +L+ Q F QM +M + G+ +GG + N
Sbjct: 396 FSKQPNRIQRVARGSGVATRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQM 455
Query: 363 LKSEQK 368
K Q+
Sbjct: 456 AKLNQQ 461
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 118/366 (32%), Positives = 206/366 (56%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + +I+ GLQG GKTT +KLA + +++G K+C++ A D YR A DQL +
Sbjct: 98 KGKQNIIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICA-DTYRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPALSNLEDA 362
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + N
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQL 455
Query: 363 LKSEQK 368
K Q+
Sbjct: 456 AKLNQQ 461
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 34 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 92
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 93 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 152
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 153 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 212
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 213 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 271
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 272 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 331
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 332 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 391
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 392 AKLNQQMA 399
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 119/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA + +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 119/368 (32%), Positives = 210/368 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + VI+ GLQG GKTT +KLA + +++G K+C++ A D +R A DQL +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 277 EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---L 305
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 336 FQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMGVMEGGSLPA-LSNLED 361
++ P R +RVA+ SG + + V +L+ Q F QM +M + G+ +GG + +S +
Sbjct: 396 FSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455
Query: 362 ALKSEQKA 369
A ++Q A
Sbjct: 456 AKLNQQMA 463
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 521 (188.5 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 125/363 (34%), Positives = 201/363 (55%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K RP+VI++ GLQG GKTT +KLA + +++G KSC LVA D +R A DQL +
Sbjct: 98 KGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSC-LVAADTFRAGAFDQLKQNAIKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
VP + + TE P IAK+G+++ K DV+IVDT+GR Q ++ + E+ ++ + P +
Sbjct: 157 VPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQ 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++++DA GQ A + F I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 TIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E + DLE F P ++LG+GD+ +E Q + D + M K + F DF Q
Sbjct: 277 EHINDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNLEQGKFTVRDFRDQ 334
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMIEAMTPEEREKPELL-A 307
+ ++G +S++ MIPGM + + + E SL++ M ++++MT +E + LL
Sbjct: 335 LGNIMKLGPLSKMASMIPGMSNMMNG-MNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFV 393
Query: 308 ESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG--GSLPALSNLEDALKS 365
E P R RVA+ SG + +V + ++Q+ ++ +M +G +G G L N ALK
Sbjct: 394 EQPSRVLRVARGSGTSVLEVEETISQV-RVFAQMAKKIGGKDGILGKLGG--NPAAALKK 450
Query: 366 EQK 368
+ +
Sbjct: 451 DPR 453
Score = 38 (18.4 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 333 QLFQMRVRMKNLMGVMEGGSLPALS 357
QL M+ RM+ MG+ GG +P L+
Sbjct: 454 QLAAMQKRMQ-AMGM--GGGMPGLN 475
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 115/342 (33%), Positives = 195/342 (57%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 70
K + V++ GLQG GKTT KLA +Y K+ KSC LV D +R A DQ+ +
Sbjct: 98 KGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSC-LVCADTFRAGAYDQVKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + TE+ P IA+ G++ K++ +++IVDT+GR + ++++ +E+ V ++P
Sbjct: 157 IPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++ V+DA GQ A F ++ I I+TKLDG ++GG ALS + PI +G G
Sbjct: 217 IIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++DLEPF ++LGMGD+ ++K E ++ + +E+ +KI +F D +Q
Sbjct: 277 EHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNE-LKLDGNDELLEKIKHGHFTIRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEE---REKPEL 305
+ + +MG S+ + MIPG + +T +E+ +K M M+++M+ E R+ +L
Sbjct: 336 FQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKL 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
++ P R RVAQ +G E++V +L+A + +K + GV
Sbjct: 396 FSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGV 437
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 114/345 (33%), Positives = 195/345 (56%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVG 70
K R V + GLQG GKTT K+A Y +++G K+C++ A D +R A DQL +
Sbjct: 98 KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICA-DTFRAGAFDQLKQNATKAR 156
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + +E+ P +IA +G+E+ ++ +++IVDT+GR + + ++ +E+ V + P
Sbjct: 157 IPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDN 216
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
V+ V+DA GQ A F+ + + I+TKLD ++GG ALS V+ P+ +G G
Sbjct: 217 VVFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTG 276
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
E ++D E F P ++LGMGD+ V+ ++ Q D +E+ ++ F D +Q
Sbjct: 277 EHIDDFEIFKPKSFVQKLLGMGDIAGLVDMVNDIGIQ-DNKELVGRLKQGQFTLRDMYEQ 335
Query: 251 TRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKP---EL 305
+ + +MG S+++GMIPG G +T +E+ LK M ++++M+ +E + P EL
Sbjct: 336 FQNIMKMGPFSQIMGMIPGFGSEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASEL 395
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
+ P R RVA+ SG +Q+V L+AQ + +K + G ++G
Sbjct: 396 FTKEPNRVARVARGSGSHQQEVRDLLAQYKKFSDVVKKI-GSIKG 439
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 118/367 (32%), Positives = 201/367 (54%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K++ +V++ GLQG GKTT K A Y +K+G LV D +R A DQL + +
Sbjct: 98 KAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
P Y + TE P +IA +G++ KK+N D++IVDT+GR + + ++ +E++ V P V
Sbjct: 158 PFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLV 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+D+ GQ A F + + I+TK+DG ++GG ALS + P+ +G GE
Sbjct: 218 IFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
M++ E F R+LGMGD FV+K QEV+ ++ E+ +K+ NF Q
Sbjct: 278 HMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQF 337
Query: 252 RTVARMGSMSRVIGMIPGMG-KITP-AQVREAEKSLKIMEAMIEAMTPEEREK--PELLA 307
+ + MG + V M+PG+ ++ P +E++ +K M+++MT +E + P++
Sbjct: 338 QNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFN 397
Query: 308 ESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSLPALSNLEDALK 364
ES R R+A+ SG+ ++V +++ + L ++ +MK L + + G + ALS +A
Sbjct: 398 ES--RMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKNGDMSALSRNMNAQH 454
Query: 365 SEQKAPP 371
+ PP
Sbjct: 455 MSKVLPP 461
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 118/353 (33%), Positives = 186/353 (52%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K + VIL GLQG GKTT K A+Y +K+G LV D +R A DQL +V +
Sbjct: 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
P Y + +EV P +IA G+ K D++IVD++GR + + + +E+ V+ + P E+
Sbjct: 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEI 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+D+ GQ F + + I+TK+DG ++GG ALS +G PI +G GE
Sbjct: 218 IFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
+ D E F R+LG+GD+ V +EV+ + E+ ++ F D Q
Sbjct: 278 HVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQF 337
Query: 252 RTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ V +MGS+S+V+ MIPG G I+ +E +K ++++MT EE + + L +S
Sbjct: 338 QNVFKMGSLSKVMSMIPGFGNNLISKGTEKEGIDKIKKFMVIMDSMTNEELDCIKPLNDS 397
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSLPALSNL 359
R R+ + SG Q + +L+ Q L +M V+M L G+ E +SNL
Sbjct: 398 --RCLRIVKGSGTRLQDIKELLEQFKFLQKMVVKMGKL-GLRENN----ISNL 443
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 118/353 (33%), Positives = 186/353 (52%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K + VIL GLQG GKTT K A+Y +K+G LV D +R A DQL +V +
Sbjct: 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
P Y + +EV P +IA G+ K D++IVD++GR + + + +E+ V+ + P E+
Sbjct: 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEI 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+D+ GQ F + + I+TK+DG ++GG ALS +G PI +G GE
Sbjct: 218 IFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
+ D E F R+LG+GD+ V +EV+ + E+ ++ F D Q
Sbjct: 278 HVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQF 337
Query: 252 RTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ V +MGS+S+V+ MIPG G I+ +E +K ++++MT EE + + L +S
Sbjct: 338 QNVFKMGSLSKVMSMIPGFGNNLISKGTEKEGIDKIKKFMVIMDSMTNEELDCIKPLNDS 397
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSLPALSNL 359
R R+ + SG Q + +L+ Q L +M V+M L G+ E +SNL
Sbjct: 398 --RCLRIVKGSGTRLQDIKELLEQFKFLQKMVVKMGKL-GLRENN----ISNL 443
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 115/346 (33%), Positives = 179/346 (51%)
Query: 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 70
+K VI+ GLQG GKTT KLA Y KK+G LV D +R A DQL +
Sbjct: 114 SKESSHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKAN 173
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
+P Y + E P +IA +G+++ K++ D++IVDT+GR + ++ + E+ + + PT+
Sbjct: 174 IPYYGSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQPTQ 233
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
++V+D GQ A + F ILTK+DG ++GG A+S + PI +G G
Sbjct: 234 TIMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTG 293
Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ--KKIMSANFDFNDFL 248
E + DLE F P ++LG+GD+ +E Q + +D Q + I F DF
Sbjct: 294 EHVGDLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQ 353
Query: 249 KQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMIEAMTPEEREKP-EL 305
Q +MG ++ + MIPG+ I +QV + E S KI M ++++MT +E E +
Sbjct: 354 NQMNNFLKMGPLTNIASMIPGLSNIM-SQVGDEETSKKIKNMIYIMDSMTIKELESDGRI 412
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 351
+ P R RVA+ SG +V ++ Q M K+ M +GG
Sbjct: 413 FIKEPSRIVRVARGSGCAVVEVEMILQQHRMMSTMAKSAMAA-QGG 457
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 122/400 (30%), Positives = 201/400 (50%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K + +++ GLQG GKTT KLA + KK+G S +V D +R A DQ+ + +
Sbjct: 98 KGKSNIVMFVGLQGAGKTTSVTKLAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
Y + TE P +A+ G++ KK +++IVDT+GR + D + +E+K ++ + P
Sbjct: 158 HYYGSETEKDPVVVARTGVDIFKKDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNC 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+D+ GQ A T F + + I+TK+DG+S GG A+S + PI +G GE
Sbjct: 218 IFVMDSSIGQAAYEQATAFRSSVKVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
+ DLE F P ++LG GD+ +EK +EV+ ED+ + K+I F +Q
Sbjct: 278 HLTDLELFDPSTFVSKLLGYGDMKGMLEKIKEVIP-EDSTSL-KEIAQGKFTLRSMQQQF 335
Query: 252 RTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 311
+ + ++G + +++ MIPGM ++ Q E LK ++++++ EK EL + P+
Sbjct: 336 QQIMQLGPIDKLVQMIPGMNQLPQLQGNEGGLKLKAYINILDSLS----EK-ELDGKKPI 390
Query: 312 RRKRV---AQDSGKTEQQVSQLVAQ--LFQMRVRMKN----LMGVMEGGSLPALSNLEDA 362
+KR+ AQ SG+ +V +L+ Q F+ + L +M G P N+E A
Sbjct: 391 TQKRIITIAQGSGRHPNEVVELLEQHKTFEKLIGKGGPGGGLGSLMAGKGGP--KNMEQA 448
Query: 363 LKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGG 402
+K + A G D A G GGG
Sbjct: 449 MK-QMNANGGMQGLMNSLKGMGGMGDLAKMFGGGGGGGGG 487
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 102/335 (30%), Positives = 179/335 (53%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K++P+V++ GLQG GKTT K A Y +K+G LV D +R A DQL + +
Sbjct: 98 KAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
P Y + TE P +IA +G++ KK+ D++IVDT+GR + ++ +E++ V P V
Sbjct: 158 PFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLV 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+D+ GQ A F + + I+TK+DG ++GG ALS + P+ +G GE
Sbjct: 218 IFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
M++ E F R+LG GD V+K QEV+ ++ E+ + + NF Q
Sbjct: 278 HMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQF 337
Query: 252 RTVARMGSMSRVIGMIPGMG-KITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ R+ ++++ M+PG+ ++ P E+ +K M+++MT +E + P +
Sbjct: 338 QCSLRI-PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFN 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R R+A+ SG+ ++V +++ + ++ MK +
Sbjct: 397 ESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGI 431
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 104/367 (28%), Positives = 194/367 (52%)
Query: 12 KSRPTVILLAGLQG--VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 69
K++P+V++ GLQG + K + + ++++G LV D +R A DQL +
Sbjct: 98 KAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKS 157
Query: 70 GVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT 129
+P Y + T P +IA +G++ KK+N D++IVDT+GR + ++ +E++ + P
Sbjct: 158 KIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPD 217
Query: 130 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 189
V+ V+D+ GQ A F + + I+TK+DG ++GG LS + P+ +G
Sbjct: 218 LVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGT 277
Query: 190 GERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLK 249
GE M++ E F R+LG GD+ FV K QEV+ ++ E+ + + F
Sbjct: 278 GEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYD 337
Query: 250 QTRTVARMGSMSRVIGMIPGM-GKITP-AQVREAEKSLKIMEAMIEAMTPEEREK--PEL 305
Q + + MG + V M+PGM ++ P +E++ +K M+++MT EE + P++
Sbjct: 338 QFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNPKV 397
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV--MEGGSLPALSNLEDAL 363
ES R R+A+ SG+ ++V +++ + ++ + G+ +E G++ ALS +++
Sbjct: 398 FNES--RIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQ 455
Query: 364 KSEQKAP 370
+ + P
Sbjct: 456 QLSKVLP 462
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 92/193 (47%), Positives = 123/193 (63%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA Y K+QGK +L AGD +R AAI+QL I G +VG PV
Sbjct: 101 PLVILVVGVNGVGKTTTIGKLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVI 160
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
P+ +A ++ A + +DV+I+DTAGRL +M+EL+ VKRV+ P
Sbjct: 161 KQKEGSDPAAVAFDAVKAAIARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAP 220
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EVLLV+DA TGQ A + V FN + +TG +LTKLDG ++GG + +K PIK +G
Sbjct: 221 DEVLLVLDATTGQNALSQVEYFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIG 280
Query: 189 RGERMEDLEPFYP 201
GE+M+DL PF P
Sbjct: 281 VGEKMDDLRPFDP 293
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 88/194 (45%), Positives = 122/194 (62%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 353 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 412
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 413 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 472
Query: 189 RGERMEDLEPFYPD 202
GER+EDL PF D
Sbjct: 473 VGERIEDLRPFKAD 486
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 89/204 (43%), Positives = 128/204 (62%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+E+ K TV+L G+ GVGKTT K+A+ K +GKS +L AGD +R AI+QL +
Sbjct: 111 NEVNMQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVW 170
Query: 66 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
G++VGV V G+ P+ + ++ AK +NVDV++ DTAGRLQ +M EL+ VKRV
Sbjct: 171 GDRVGVEVIKQGSGSDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRV 230
Query: 126 LN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
+ P EVLLV+DA TGQ + TF +TG +LTKLDG ++GG L+++
Sbjct: 231 IEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNE 290
Query: 180 SGKPIKLVGRGERMEDLEPFYPDR 203
P+K VG GE+M+DL+ F P++
Sbjct: 291 MDVPVKFVGLGEQMDDLQQFDPEQ 314
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 82/203 (40%), Positives = 124/203 (61%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
RP V+L+ G+ G GKTT KLA+ K GK ++ AGD +R AA++QL + G++ GVPV
Sbjct: 184 RPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPV 243
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------ 127
TA P+ +A + A++ D++++DTAGRLQ +M+EL + RV+
Sbjct: 244 LTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEELAKIVRVIRKKDDTA 303
Query: 128 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLV 187
P LLV+DA TGQ A + V TF ++G ++TKLDG ++GG +S+ + G PI +
Sbjct: 304 PHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGILVSLADRFGLPIHAI 363
Query: 188 GRGERMEDLEPFYPDRMAGRILG 210
G GE+++DL PF P+ A + G
Sbjct: 364 GVGEQIDDLAPFDPEDFAAALTG 386
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 84/194 (43%), Positives = 117/194 (60%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA + QGKS ML AGD +R AA++QL + GE+ +PV
Sbjct: 279 PFVILMVGVNGVGKTTTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVI 338
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + + AK + VD++I DTAGRLQ +M+ELK V RV+ P
Sbjct: 339 AQHTGADSASVIFDAISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAP 398
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG +TKLDG ++GG +V + PI+ +G
Sbjct: 399 HEVMLTLDAGTGQNALSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLG 458
Query: 189 RGERMEDLEPFYPD 202
GE ++DL PF D
Sbjct: 459 VGEGIDDLRPFNSD 472
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 82/198 (41%), Positives = 119/198 (60%)
Query: 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 67
++ + +P VIL+ G+ GVGKTT KLA + QGK ML AGD +R AA++QL + GE
Sbjct: 180 VIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGE 239
Query: 68 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 127
+ VPV T + + +E AK + +DVVI DTAGRLQ +M+EL+ + RV+
Sbjct: 240 RNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMK 299
Query: 128 ------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
P E++L +DA TGQ A + F+ ITG LTKLDG ++GG ++ +
Sbjct: 300 KIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQ 359
Query: 182 KPIKLVGRGERMEDLEPF 199
PI+ +G GE+++DL PF
Sbjct: 360 IPIRYIGVGEKIDDLRPF 377
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 303 PFVILMVGVNGVGKTTTIGKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVV 362
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + L+ AK + +DV+I DTAGRLQ +M+ELK V RV+ P
Sbjct: 363 AQHTGADSASVLFDALQAAKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAP 422
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F +G+TG ++KLDG ++GG ++ + P++ +G
Sbjct: 423 HEVMLTLDASTGQNAISQAQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIG 482
Query: 189 RGERMEDLEPF 199
GE+++DL F
Sbjct: 483 VGEQIDDLRTF 493
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 82/216 (37%), Positives = 124/216 (57%)
Query: 3 GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
G E + + TV+L G+ GVGKTT KLA+ K+ GK MLVA D +R A+ QL
Sbjct: 213 GSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQL 272
Query: 63 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
G +V VPV T + P+ + G+E A + +D++++DTAGRLQ +M EL+ +
Sbjct: 273 AEWGRRVDVPVVTGPEKADPASVVFDGMERAVTEGIDILMIDTAGRLQNKDNLMAELEKI 332
Query: 123 KRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 176
R++ P E L +DA TGQ A F+ +TG +LTK+DG +RGG L++
Sbjct: 333 GRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAI 392
Query: 177 KEVSGKPIKLVGRGERMEDLEPFYPDR-MAGRILGM 211
+E P+KL+G GE+++D+ F + M G + G+
Sbjct: 393 REELNIPVKLIGFGEKIDDIGEFNSENFMKGLLEGL 428
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 81/191 (42%), Positives = 113/191 (59%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL G+ GVGKTT AKLA++ + Q K ML AGD +R AAI+QL G++ PV
Sbjct: 122 PFVILTVGVNGVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVI 181
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
+ + +E A ++ D++I DTAGRL +MDEL +KRV+ P
Sbjct: 182 AQQPGADSASVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAP 241
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
E LLV+DA TGQ A F+ IG+TG +TKLDG ++GG ++ + PI+ +G
Sbjct: 242 HETLLVLDAGTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIG 301
Query: 189 RGERMEDLEPF 199
GE++EDL+PF
Sbjct: 302 MGEKIEDLKPF 312
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 83/200 (41%), Positives = 112/200 (56%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P+V+L+ G+ G GKTT KLA L G+ +L A D +R AA DQL +VG V
Sbjct: 223 PSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVV 282
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL----NPTE 130
P+ +A +++ DVV++DTAGRL +MDEL VKRV+ + E
Sbjct: 283 RGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRASVDE 342
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
VLLV+DA GQ A F + I+GA+LTKLDG ++GG V++ G P+KLVG G
Sbjct: 343 VLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLG 402
Query: 191 ERMEDLEPFYPDRMAGRILG 210
E +DL PF P +LG
Sbjct: 403 EGPDDLAPFEPAAFVDALLG 422
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 79/199 (39%), Positives = 112/199 (56%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 76
V+L+ G+ GVGKTT AKL Y + GK M AGD +R A QL G+++ +PV
Sbjct: 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQG 163
Query: 77 GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTE 130
P+ +A ++ K + D++ VDTAGRL +M+ELK VKR + P E
Sbjct: 164 PEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKE 223
Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
V LV+DA+TGQ F+ +G+TG I+TKLDG ++GG + + PIK VG G
Sbjct: 224 VWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVG 283
Query: 191 ERMEDLEPFYPDRMAGRIL 209
E +DL+PF P+ +L
Sbjct: 284 EGPDDLQPFDPEAFVEALL 302
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 82/210 (39%), Positives = 121/210 (57%)
Query: 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 66
+L+F ++ P VI+ G+ G GKTT KLA ++ K+ M+ A D++R AAI+QL
Sbjct: 94 KLIFPQTGPQVIVFCGVNGNGKTTTIGKLAYKFIQENKTVMIAACDLFRAAAIEQLRFWA 153
Query: 67 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126
E+ +++ T S A + LE+A + VDV+IVDT+GRL +M+ELK + RVL
Sbjct: 154 ERASATFFSSETSKNASGTAYKALEKALEDKVDVLIVDTSGRLHTQNDLMEELKKICRVL 213
Query: 127 N------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE-V 179
+ P EV+L +DA TGQ A V F + +TG ++TKLDG S+GG +++ E
Sbjct: 214 SKLMPSAPNEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLDGTSKGGVIVAIAERY 273
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
I VG GE++ DLE F P +L
Sbjct: 274 PNLGIYFVGTGEKITDLEEFSPSEFVDALL 303
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 80/206 (38%), Positives = 116/206 (56%)
Query: 4 EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
+ +L + P VI++ G+ GVGKTT KLA QGK +L AGD +R AA +QL
Sbjct: 138 DAHQLDVTGASPFVIMVIGVNGVGKTTTIGKLAARFTAQGKKVILAAGDTFRAAAAEQLQ 197
Query: 64 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123
I GE+ GV V PS + ++ A + D++IVDTAGRL +M+ELK V+
Sbjct: 198 IWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTAGRLHTKVNLMEELKKVR 257
Query: 124 RVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 177
R+++ P E LLV+DA TGQ A + F +TG LTKLDG ++GG +++
Sbjct: 258 RIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAKGGIVVAIC 317
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDR 203
P++ +G GE ++DL F P +
Sbjct: 318 NEFRIPVRYIGVGEGIDDLRDFDPSQ 343
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 75/217 (34%), Positives = 123/217 (56%)
Query: 4 EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
+V + + ++P VI++ G G GKTT KLA+ K GK ++ A D +R AA +QL+
Sbjct: 94 QVEKPLSINNKPHVIMVCGTNGNGKTTTIGKLAHRFKNTGKKVLVAACDTFRAAATEQLI 153
Query: 64 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123
+ ++V PV T + IA Q +++A + DV+++DTAGRL K +M+EL ++
Sbjct: 154 VWSQKVNFPVVTGNQGADAASIAYQAMQQALNEQTDVLLIDTAGRLHNHKNLMEELAKIR 213
Query: 124 RVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 177
R++N P +V+L++DA TGQ A V F + I+G I+TKLDG ++GG + +
Sbjct: 214 RIINKHDNNAPHDVILILDATTGQNAVNQVDAFLQFVNISGLIITKLDGTAKGGVVIRIA 273
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214
+ I +G GE +E L+ F A +L + +
Sbjct: 274 QKYKLNIHAIGIGESVEQLQDFSAKEFAAGLLDINTI 310
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 78/201 (38%), Positives = 114/201 (56%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P +ILL G+ G GKTT AKLA+ K+ S ++ A D +R AA++QL + E++ P+
Sbjct: 103 PHIILLCGVNGSGKTTTVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIV 162
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + +A + +E A K+ DVVI+DTAGRL K +M+EL + RV+ P
Sbjct: 163 TGTIGADAASVAYKTVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAP 222
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
+++LV+DA GQ V F+ + + G ILTKLDG ++GG L V + I +G
Sbjct: 223 HDIILVLDATIGQNTFTQVEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIG 282
Query: 189 RGERMEDLEPFYPDRMAGRIL 209
GE +EDLE F A +L
Sbjct: 283 TGEGIEDLEDFSATNFAKSLL 303
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 74/194 (38%), Positives = 105/194 (54%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
+ +P V L+ G+ G GKTT AKLA K Q + +L A D +R AI+QL + ++V V
Sbjct: 80 QEKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDV 139
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN---- 127
+ PS +A + +AK K+ D VI+DTAGRLQ K + EL+ + R+ N
Sbjct: 140 DIVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALE 199
Query: 128 --PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
P +LV+D G FN + + G I+TKLDG ++GGA S+ PI
Sbjct: 200 GAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIF 259
Query: 186 LVGRGERMEDLEPF 199
VG GE+M DL+ F
Sbjct: 260 YVGVGEQMTDLQEF 273
>TAIR|locus:2118701 [details] [associations]
symbol:AT4G30600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005783 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003924
EMBL:AL161577 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
HOGENOM:HOG000201671 OMA:LILWSSC EMBL:AY065066 EMBL:AY133612
IPI:IPI00534083 PIR:A85358 RefSeq:NP_194789.1 UniGene:At.4581
HSSP:P83749 ProteinModelPortal:Q9M0A0 SMR:Q9M0A0 STRING:Q9M0A0
PaxDb:Q9M0A0 PRIDE:Q9M0A0 EnsemblPlants:AT4G30600.1 GeneID:829183
KEGG:ath:AT4G30600 TAIR:At4g30600 InParanoid:Q9M0A0
PhylomeDB:Q9M0A0 ProtClustDB:CLSN2685629 ArrayExpress:Q9M0A0
Genevestigator:Q9M0A0 Uniprot:Q9M0A0
Length = 634
Score = 303 (111.7 bits), Expect = 3.8e-26, P = 3.8e-26
Identities = 69/195 (35%), Positives = 114/195 (58%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
+P V++ G+ GVGK+T AK+A +L++ S M+ A D +R A++QL ++ +P+
Sbjct: 427 KPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPI 486
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
+ G E P+ +AK+ ++EA + DVV+VDTAGR+Q ++ +M L + + P VL
Sbjct: 487 FEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLF 546
Query: 134 VVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGK 182
V +A+ G +A ++ FN ++ I G +LTK D D + GAALS+ +SG
Sbjct: 547 VGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGS 606
Query: 183 PIKLVGRGERMEDLE 197
P+ VG G+ DL+
Sbjct: 607 PVMFVGCGQSYTDLK 621
>WB|WBGene00009521 [details] [associations]
symbol:F38A1.8 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0018996 GO:GO:0003924 GO:GO:0048477
SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:FO080472 EMBL:FO081324 EMBL:FO081776
RefSeq:NP_741303.2 ProteinModelPortal:G4RYA5 SMR:G4RYA5
EnsemblMetazoa:F38A1.8 GeneID:185438 KEGG:cel:CELE_F38A1.8
CTD:185438 WormBase:F38A1.8 NextBio:928280 Uniprot:G4RYA5
Length = 625
Score = 261 (96.9 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 71/210 (33%), Positives = 114/210 (54%)
Query: 7 ELVFAK--SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI 64
+++ AK RP VI+ G+ GVGK+T AK+ +L + ++ AGD +R A++QL
Sbjct: 402 DVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRT 461
Query: 65 LGEQVG------VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 118
+ V ++ G P+ +A +++A +++ DVV+VDTAGR+Q ++ +M E
Sbjct: 462 HARYLNDLHKNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRE 521
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG-----------ITGAILTKLDG- 166
L + RV P VL V +A+ G EA + FN + I G +LTK D
Sbjct: 522 LAKLIRVNEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFDTI 581
Query: 167 DSRGGAALSVKEVSGKPIKLVGRGERMEDL 196
D + GAA+S+ ++G+PI VG G+ DL
Sbjct: 582 DDKVGAAVSMTYITGQPIVFVGCGQTYSDL 611
>DICTYBASE|DDB_G0277377 [details] [associations]
symbol:srpR "signal recognition particle receptor
alpha subunit" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA;ISS] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 dictyBase:DDB_G0277377 GO:GO:0005525
GO:GO:0005789 GO:GO:0003924 GenomeReviews:CM000151_GR
EMBL:AAFI02000019 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005785 GO:GO:0005047
HSSP:P08240 RefSeq:XP_642799.1 ProteinModelPortal:Q54ZR7
STRING:Q54ZR7 EnsemblProtists:DDB0252680 GeneID:8620992
KEGG:ddi:DDB_G0277377 OMA:LILWSSC ProtClustDB:CLSZ2846855
Uniprot:Q54ZR7
Length = 615
Score = 253 (94.1 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 65/197 (32%), Positives = 102/197 (51%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
RP I+ +G+ GVGK+T AK+ +L G CML A D +R AI+QL +++ V +
Sbjct: 406 RPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHL 465
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
+ G + +A+ + AK DVV++DT GR+Q ++ +M L + N VL
Sbjct: 466 FERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLF 525
Query: 134 VVDAMTGQEAAALVTTFNIEIG------------ITGAILTKLDG-DSRGGAALSVKEVS 180
V +A+ G + +T F+ + I G ILTK D D + GAA+S+ +
Sbjct: 526 VGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYST 585
Query: 181 GKPIKLVGRGERMEDLE 197
G PI +G G+ DL+
Sbjct: 586 GHPILFLGTGQNYTDLK 602
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 237 (88.5 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 68/208 (32%), Positives = 106/208 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG--- 70
RP I+ G+ GVGK+T AK+ +L + + ++ A D +R A++QL +
Sbjct: 394 RPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALH 453
Query: 71 ----------VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
V +Y G + IA + ++ A VDVV+VDTAGR+Q ++ +M L
Sbjct: 454 PAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLS 513
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ +V NP VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 514 KLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDK 573
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDLE 197
GAA+S+ ++G+PI VG G+ DL+
Sbjct: 574 VGAAISMTYITGQPIVFVGTGQTYADLK 601
>UNIPROTKB|Q3V8C7 [details] [associations]
symbol:flhF "Flagellar biogenesis protein FlhF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064
GO:GO:0006614 KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 232 (86.7 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPAAIDQLVILG 66
L K+ P +I L G GVGKTT AKLA +Y ++G L+ D +R A++QL
Sbjct: 249 LTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTYS 308
Query: 67 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126
+GVPV A T + + +E K +++++DTAGR D ++ELK
Sbjct: 309 RIMGVPVEVAATAAE----LEAAIELHSDK--ELILIDTAGRSHKDSEKIEELKGFLESR 362
Query: 127 NPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
E+ L + A T +E +V F + + ++ I TKLD G+ ++ + P+
Sbjct: 363 FAIEIHLCLAATTRDREVLEIVERFGV-LSVSRVIFTKLDESESYGSIVNAHLRTKFPLS 421
Query: 186 LVGRGERM-EDLEPFYPDRMAGRILG 210
G+R+ EDLE P R+AG +LG
Sbjct: 422 YFTTGQRVPEDLEIATPGRLAGLVLG 447
>TIGR_CMR|GSU_3055 [details] [associations]
symbol:GSU_3055 "flagellar biosynthetic protein FlhF,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR020006 Pfam:PF00448 SMART:SM00382 SMART:SM00962
GO:GO:0005525 GO:GO:0005886 GO:GO:0019861 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064 GO:GO:0006614
KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 232 (86.7 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPAAIDQLVILG 66
L K+ P +I L G GVGKTT AKLA +Y ++G L+ D +R A++QL
Sbjct: 249 LTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTYS 308
Query: 67 EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126
+GVPV A T + + +E K +++++DTAGR D ++ELK
Sbjct: 309 RIMGVPVEVAATAAE----LEAAIELHSDK--ELILIDTAGRSHKDSEKIEELKGFLESR 362
Query: 127 NPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
E+ L + A T +E +V F + + ++ I TKLD G+ ++ + P+
Sbjct: 363 FAIEIHLCLAATTRDREVLEIVERFGV-LSVSRVIFTKLDESESYGSIVNAHLRTKFPLS 421
Query: 186 LVGRGERM-EDLEPFYPDRMAGRILG 210
G+R+ EDLE P R+AG +LG
Sbjct: 422 YFTTGQRVPEDLEIATPGRLAGLVLG 447
>ZFIN|ZDB-GENE-030219-11 [details] [associations]
symbol:srpr "signal recognition particle receptor
(docking protein)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
ZFIN:ZDB-GENE-030219-11 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
CTD:6734 GeneTree:ENSGT00550000074936 EMBL:CU469519 IPI:IPI00799782
RefSeq:XP_697518.3 UniGene:Dr.79180 Ensembl:ENSDART00000086823
GeneID:569063 KEGG:dre:569063 NextBio:20889487 Uniprot:E7EZW6
Length = 650
Score = 234 (87.4 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 67/210 (31%), Positives = 107/210 (50%)
Query: 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL----- 65
++ +P VI G+ GVGK+T AK++ +L + G + ++ A D +R A++QL
Sbjct: 426 SQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLN 485
Query: 66 --------GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMD 117
G Q V ++ G + IA + + A+ + DVV++DTAGR+Q + +M
Sbjct: 486 SLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMT 545
Query: 118 ELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG- 166
L + V P VL V +A+ G EA + FN + I G +LTK D
Sbjct: 546 ALAKLIAVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTI 605
Query: 167 DSRGGAALSVKEVSGKPIKLVGRGERMEDL 196
D + GAA+S+ ++G+PI VG G+ DL
Sbjct: 606 DDKVGAAISMTYITGQPIVFVGTGQTYSDL 635
>MGI|MGI:1914648 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005785 "signal recognition particle
receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 MGI:MGI:1914648 GO:GO:0005525 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:AK004967 EMBL:AK038017 EMBL:BC012512 EMBL:BC021839
IPI:IPI00119695 RefSeq:NP_080406.1 UniGene:Mm.284688
ProteinModelPortal:Q9DBG7 SMR:Q9DBG7 STRING:Q9DBG7
PhosphoSite:Q9DBG7 PaxDb:Q9DBG7 PRIDE:Q9DBG7
Ensembl:ENSMUST00000034541 GeneID:67398 KEGG:mmu:67398
UCSC:uc009osy.1 InParanoid:Q9DBG7 NextBio:324466 Bgee:Q9DBG7
Genevestigator:Q9DBG7 GermOnline:ENSMUSG00000032042 Uniprot:Q9DBG7
Length = 636
Score = 233 (87.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 69/209 (33%), Positives = 106/209 (50%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VI 64
+ RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL
Sbjct: 413 RQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTA 472
Query: 65 L------GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 118
L G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M
Sbjct: 473 LHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTA 532
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-D 167
L + V P VL V +A+ G EA + FN + I G +LTK D D
Sbjct: 533 LAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTID 592
Query: 168 SRGGAALSVKEVSGKPIKLVGRGERMEDL 196
+ GAA+S+ ++ KPI VG G+ DL
Sbjct: 593 DKVGAAISMTYITSKPIVFVGTGQTYCDL 621
>RGD|1311504 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10116 "Rattus norvegicus" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:1311504 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:BC105782 IPI:IPI00362579 RefSeq:NP_001029322.1
UniGene:Rn.18349 SMR:Q3KRC3 STRING:Q3KRC3
Ensembl:ENSRNOT00000015177 GeneID:315548 KEGG:rno:315548
UCSC:RGD:1311504 InParanoid:Q3KRC3 NextBio:669402
Genevestigator:Q3KRC3 Uniprot:Q3KRC3
Length = 636
Score = 233 (87.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 69/209 (33%), Positives = 106/209 (50%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VI 64
+ RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL
Sbjct: 413 RQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTA 472
Query: 65 L------GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 118
L G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M
Sbjct: 473 LHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTA 532
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-D 167
L + V P VL V +A+ G EA + FN + I G +LTK D D
Sbjct: 533 LAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTID 592
Query: 168 SRGGAALSVKEVSGKPIKLVGRGERMEDL 196
+ GAA+S+ ++ KPI VG G+ DL
Sbjct: 593 DKVGAAISMTYITSKPIVFVGTGQTYCDL 621
>UNIPROTKB|P08240 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0006613
"cotranslational protein targeting to membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0006987 "activation of signaling protein activity involved in
unfolded protein response" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0016021 Reactome:REACT_116125 GO:GO:0006987 EMBL:CH471065
GO:GO:0006412 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
PDB:2GO5 PDBsum:2GO5 PDB:2FH5 PDBsum:2FH5 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X06272 EMBL:AK312377 EMBL:AP001318 EMBL:BC001162 EMBL:BC009110
EMBL:BC013583 IPI:IPI00385267 PIR:A29440 RefSeq:NP_001171313.1
RefSeq:NP_003130.2 UniGene:Hs.368376 ProteinModelPortal:P08240
SMR:P08240 IntAct:P08240 MINT:MINT-1404634 STRING:P08240
PhosphoSite:P08240 DMDM:20455516 PaxDb:P08240 PRIDE:P08240
DNASU:6734 Ensembl:ENST00000332118 GeneID:6734 KEGG:hsa:6734
UCSC:uc001qdh.3 GeneCards:GC11M126132 HGNC:HGNC:11307 MIM:182180
neXtProt:NX_P08240 PharmGKB:PA36131 InParanoid:P08240 OMA:KEGSDGP
ChiTaRS:SRPR EvolutionaryTrace:P08240 GenomeRNAi:6734 NextBio:26272
ArrayExpress:P08240 Bgee:P08240 CleanEx:HS_SRPR
Genevestigator:P08240 GermOnline:ENSG00000182934 Uniprot:P08240
Length = 638
Score = 231 (86.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 69/209 (33%), Positives = 106/209 (50%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VI 64
+ RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL
Sbjct: 415 RQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSA 474
Query: 65 L------GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 118
L G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M
Sbjct: 475 LHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTA 534
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-D 167
L + V P VL V +A+ G EA + FN + I G +LTK D D
Sbjct: 535 LAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTID 594
Query: 168 SRGGAALSVKEVSGKPIKLVGRGERMEDL 196
+ GAA+S+ ++ KPI VG G+ DL
Sbjct: 595 DKVGAAISMTYITSKPIVFVGTGQTYCDL 623
>UNIPROTKB|F1NXV4 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
OMA:LILWSSC GeneTree:ENSGT00550000074936 EMBL:AADN02042027
IPI:IPI00593518 Ensembl:ENSGALT00000001579 Uniprot:F1NXV4
Length = 644
Score = 231 (86.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 69/207 (33%), Positives = 104/207 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL-------- 65
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL
Sbjct: 423 RPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFRAGAVEQLRTHTRRLNALH 482
Query: 66 -----GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
G + V +Y G + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 483 PPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQGFDVVLVDTAGRMQDNAPLMTALA 542
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 543 KLIAVNAPDLVLFVGEALVGNEAVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDK 602
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 603 VGAAISMTYITSKPIVFVGTGQTYCDL 629
>ASPGD|ASPL0000006202 [details] [associations]
symbol:AN6627 species:162425 "Emericella nidulans"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 EMBL:BN001301 SUPFAM:SSF64356
EMBL:AACD01000110 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 HOGENOM:HOG000201671
OrthoDB:EOG42Z7ZQ RefSeq:XP_664231.1 ProteinModelPortal:Q5AYK3
STRING:Q5AYK3 EnsemblFungi:CADANIAT00007408 GeneID:2870372
KEGG:ani:AN6627.2 OMA:THETGRR Uniprot:Q5AYK3
Length = 636
Score = 230 (86.0 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG------ 66
SRP VI + G+ GVGK+T K+ +L + ++ A D +R A++QL +
Sbjct: 424 SRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRILIAACDTFRSGAVEQLRVHARNLKEL 483
Query: 67 ---EQVG-VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
E VG V +Y G + +AK +E N DVV++DTAGR D+ +M L+
Sbjct: 484 SARENVGAVELYEKGYGKDAANVAKDAVEYGAANNFDVVLIDTAGRRHNDQRLMSSLEKF 543
Query: 123 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----ITGAILTKLD--GDSRGGAALSV 176
+ P ++ +V +A+ G ++ FN G + G I++K D GD G +S+
Sbjct: 544 AKFAQPNKIFMVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVG-TLVSM 602
Query: 177 KEVSGKPIKLVGRGERMEDL 196
+G PI +G G+ DL
Sbjct: 603 VHATGIPIVFLGVGQHYGDL 622
>UNIPROTKB|F1S754 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:CU466237 EMBL:FP102836 EMBL:GACC01000039
Ensembl:ENSSSCT00000016593 Uniprot:F1S754
Length = 638
Score = 229 (85.7 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 69/207 (33%), Positives = 105/207 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VIL- 65
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL L
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 476
Query: 66 -----GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 477 PPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 537 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 596
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 597 VGAAISMTYITSKPIVFVGTGQTYCDL 623
>UNIPROTKB|Q3MHE8 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
EMBL:BC105264 IPI:IPI00695733 RefSeq:NP_001068590.1 UniGene:Bt.5518
HSSP:P08240 ProteinModelPortal:Q3MHE8 SMR:Q3MHE8 STRING:Q3MHE8
PRIDE:Q3MHE8 GeneID:281504 KEGG:bta:281504 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 InParanoid:Q3MHE8
OrthoDB:EOG4W0XCP NextBio:20805473 Uniprot:Q3MHE8
Length = 639
Score = 229 (85.7 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 69/207 (33%), Positives = 105/207 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VIL- 65
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL L
Sbjct: 418 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 477
Query: 66 -----GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 478 PPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 537
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 538 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 597
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 598 VGAAISMTYITSKPIVFVGTGQTYCDL 624
>UNIPROTKB|J9NTJ9 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 Ensembl:ENSCAFT00000045313
Uniprot:J9NTJ9
Length = 637
Score = 227 (85.0 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 70/207 (33%), Positives = 106/207 (51%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV-- 71
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL ++
Sbjct: 416 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 475
Query: 72 -PVYTAG-TEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
P AG T V+ + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 476 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 535
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 536 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 595
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 596 VGAAISMTYITSKPIVFVGTGQTYCDL 622
>UNIPROTKB|F1PLH3 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 RefSeq:XP_546411.3
Ensembl:ENSCAFT00000016629 GeneID:489293 KEGG:cfa:489293
Uniprot:F1PLH3
Length = 638
Score = 227 (85.0 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 70/207 (33%), Positives = 106/207 (51%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV-- 71
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL ++
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 476
Query: 72 -PVYTAG-TEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
P AG T V+ + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 477 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 537 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 596
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 597 VGAAISMTYITSKPIVFVGTGQTYCDL 623
>UNIPROTKB|J9P788 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:AAEX03003376
EMBL:AAEX03003378 EMBL:AAEX03003377 EMBL:AAEX03003379
Ensembl:ENSCAFT00000047935 Uniprot:J9P788
Length = 773
Score = 227 (85.0 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 70/207 (33%), Positives = 106/207 (51%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV-- 71
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL ++
Sbjct: 552 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 611
Query: 72 -PVYTAG-TEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
P AG T V+ + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 612 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 671
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 672 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 731
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 732 VGAAISMTYITSKPIVFVGTGQTYCDL 758
>UNIPROTKB|P06625 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005789 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 Reactome:REACT_146484 GO:GO:0005047
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X03184 PIR:A24570 ProteinModelPortal:P06625 SMR:P06625
STRING:P06625 PRIDE:P06625 InParanoid:P06625 Uniprot:P06625
Length = 638
Score = 221 (82.9 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------QLVILG 66
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++ +L L
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALH 476
Query: 67 ---EQVG---VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
+ G V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 477 PPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLDG-DSR 169
+ V P VL V +A+ G EA + FN + I G +LTK D D +
Sbjct: 537 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDK 596
Query: 170 GGAALSVKEVSGKPIKLVGRGERMEDL 196
GAA+S+ ++ KPI VG G+ DL
Sbjct: 597 VGAAISMTYITSKPIVFVGTGQTYCDL 623
>CGD|CAL0003010 [details] [associations]
symbol:orf19.3952 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0045047 "protein targeting to ER" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 CGD:CAL0003010 GO:GO:0005525
GO:GO:0003924 EMBL:AACQ01000012 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
RefSeq:XP_721861.1 ProteinModelPortal:Q5AK68 STRING:Q5AK68
GeneID:3636513 KEGG:cal:CaO19.3952 Uniprot:Q5AK68
Length = 535
Score = 203 (76.5 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 59/205 (28%), Positives = 105/205 (51%)
Query: 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI-------L 65
+RP VI + G+ GVGK+T AKLA + + + ++ A D +R A++QL + L
Sbjct: 319 TRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGAVEQLKVHVNNLNRL 378
Query: 66 GE-----QVGVPVYTAG--TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE 118
E + + ++ G + Q AKQ ++ A++ D+V++DTAGR + +M
Sbjct: 379 NEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLIDTAGRTHSNAKLMAP 438
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----ITGAILTKLD--GDSRGGA 172
LK NP ++++V +A+ G ++ T FN G + I++K+D GD G
Sbjct: 439 LKKFGDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVG-T 497
Query: 173 ALSVKEVSGKPIKLVGRGERMEDLE 197
+++ + PI VG G+ D++
Sbjct: 498 MINMVMATNVPILFVGTGQTYTDIK 522
>POMBASE|SPBC3B9.03 [details] [associations]
symbol:SPBC3B9.03 "signal recognition particle receptor
alpha subunit Srp101 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003924 "GTPase activity" evidence=ISM] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005525
"GTP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPBC3B9.03
GO:GO:0005525 GO:GO:0005829 GO:GO:0005634 EMBL:CU329671
GO:GO:0003924 GenomeReviews:CU329671_GR SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 HSSP:Q6MTB9 HOGENOM:HOG000201671
PIR:T40342 RefSeq:NP_596660.1 ProteinModelPortal:O43032
STRING:O43032 EnsemblFungi:SPBC3B9.03.1 GeneID:2540909
KEGG:spo:SPBC3B9.03 OMA:PVEANND OrthoDB:EOG42Z7ZQ NextBio:20802024
Uniprot:O43032
Length = 547
Score = 202 (76.2 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 57/208 (27%), Positives = 101/208 (48%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI----LGE 67
++RP I L G+ GVGK+T AK+A +L ++ A D +R AI+QL + L
Sbjct: 339 ENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQS 398
Query: 68 QVG--VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
G + ++ G S + K +E AK+ + DV+++DTAGR D+ +M L+ +
Sbjct: 399 LKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKA 458
Query: 126 LNPTEVLLVVDAMTGQEAAALVTTFNIEI---GITGAILTKLDGDSR-GGAALSVKEVSG 181
++ V +A+ G ++ A F + + G I++K+D + G + +
Sbjct: 459 TKLDKIFQVAEALVGTDSLAQAKHFQASLYHRPLDGFIISKVDTVGQLVGVMVGMVYAVR 518
Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRIL 209
PI VG G+ DL D + +++
Sbjct: 519 VPIIFVGIGQTYSDLRTLSVDWVVDQLM 546
>UNIPROTKB|Q48GG0 [details] [associations]
symbol:flhF "Flagellar biosynthesis protein FlhF"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0017111
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009296 GO:GO:0001539
GO:GO:0009288 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:YP_275523.1 ProteinModelPortal:Q48GG0
STRING:Q48GG0 GeneID:3559389 KEGG:psp:PSPPH_3365 PATRIC:19976136
Uniprot:Q48GG0
Length = 442
Score = 194 (73.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 63/182 (34%), Positives = 90/182 (49%)
Query: 17 VILLAGLQGVGKTTVSAKLA-NYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
VI + G G+GKTT AKLA Y+ K G ++ LV+ D +R A +QL LG + VPV
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPV- 282
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK-RVLNPTEVLL 133
T V P Q Q LE +K V V++DTAG D A+ +L+ + R + L+
Sbjct: 283 ---THVDPGQSLVQALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYLV 337
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
+ Q A ++ G+ G ILTKLD + G LS+ P+ + G R+
Sbjct: 338 LATTSQKQVLTAAYHSYK-RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRI 396
Query: 194 ED 195
D
Sbjct: 397 PD 398
>UNIPROTKB|Q81SE2 [details] [associations]
symbol:BA_1718 "Putative flagellar biosynthetic protein
FlhF" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 181 (68.8 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 54/187 (28%), Positives = 88/187 (47%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+E VF K T+ L+ G GVGKTT AK+A + K+ + D R + QL
Sbjct: 67 TENVFEKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 125
Query: 66 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
+ +G V E ++ EEA+ VD +++DTAG+ ++E+ +
Sbjct: 126 VKTIGFEVIAVRDEAAMTRALTYFKEEAR---VDYILIDTAGKNYRASETVEEMIETMGQ 182
Query: 126 LNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184
+ P + L + A M ++ ++T F +I I G + TK D + G L + VS PI
Sbjct: 183 VEPDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSSAPI 241
Query: 185 KLVGRGE 191
L+ G+
Sbjct: 242 VLMTDGQ 248
>TIGR_CMR|BA_1718 [details] [associations]
symbol:BA_1718 "flagellar biosynthetic protein FlhF,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 181 (68.8 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 54/187 (28%), Positives = 88/187 (47%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+E VF K T+ L+ G GVGKTT AK+A + K+ + D R + QL
Sbjct: 67 TENVFEKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 125
Query: 66 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
+ +G V E ++ EEA+ VD +++DTAG+ ++E+ +
Sbjct: 126 VKTIGFEVIAVRDEAAMTRALTYFKEEAR---VDYILIDTAGKNYRASETVEEMIETMGQ 182
Query: 126 LNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184
+ P + L + A M ++ ++T F +I I G + TK D + G L + VS PI
Sbjct: 183 VEPDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSSAPI 241
Query: 185 KLVGRGE 191
L+ G+
Sbjct: 242 VLMTDGQ 248
>SGD|S000002700 [details] [associations]
symbol:SRP101 "Signal recognition particle (SRP) receptor
alpha subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005525
"GTP binding" evidence=IEA;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA;IC;TAS]
[GO:0005047 "signal recognition particle binding" evidence=ISS;IMP]
[GO:0005785 "signal recognition particle receptor complex"
evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0045047 "protein targeting to ER"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SGD:S000002700 GO:GO:0005525
EMBL:BK006938 GO:GO:0017111 SUPFAM:SSF64356 EMBL:U51031
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 RefSeq:NP_010578.3
GeneID:851886 KEGG:sce:YDR292C KO:K13431 RefSeq:NP_010582.3
GeneID:851890 KEGG:sce:YDR296W GO:GO:0005785 TCDB:3.A.5.8.1
GO:GO:0005047 PDB:1NRJ PDBsum:1NRJ HOGENOM:HOG000201671
GeneTree:ENSGT00550000074936 OrthoDB:EOG42Z7ZQ EMBL:M77274
PIR:S70121 ProteinModelPortal:P32916 SMR:P32916 DIP:DIP-1672N
IntAct:P32916 MINT:MINT-364995 STRING:P32916 PaxDb:P32916
PeptideAtlas:P32916 EnsemblFungi:YDR292C CYGD:YDR292c OMA:HVENLAQ
EvolutionaryTrace:P32916 NextBio:969862 Genevestigator:P32916
GermOnline:YDR292C InterPro:IPR015284 Pfam:PF09201 Uniprot:P32916
Length = 621
Score = 142 (55.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 83 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE 142
++IAKQ ++ ++ +N D+V++DTAGR D +M LK P ++++V +A+ G +
Sbjct: 489 TKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTD 548
Query: 143 AAALVTTFNIEIG----ITGAILTKLD--GDSRGGAALSVKEVSGKPIKLVGRGERMEDL 196
+ FN G + I++K D G+ G +++ +G PI VG G+ DL
Sbjct: 549 SVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLG-TMVNMVYATGIPILFVGVGQTYTDL 607
Score = 92 (37.4 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
K P V + G+ GVGK+T +KLA +L + ++VA D +R A++QL
Sbjct: 394 KCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQL 444
>UNIPROTKB|Q8ECD1 [details] [associations]
symbol:flhF "Flagellar polar localization control system
flagellar assembly determinant GTPase FlhF" species:211586
"Shewanella oneidensis MR-1" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 182 (69.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 66/187 (35%), Positives = 91/187 (48%)
Query: 17 VILLAGLQGVGKTTVSAKLA-NYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVGVPVY 74
V+ L G GVGKTT AKLA + G + L+ D YR A +QL G+ +G PV
Sbjct: 243 VVALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVK 302
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLL 133
A + QI Q +N +V++DTAG Q D + +L ++ P L
Sbjct: 303 QAHDLAELEQILYQF------RNRKLVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYL 356
Query: 134 VVDAMTGQEAAA--LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
V+ A TGQ V F I ++G +LTKLD ALSV SG P+ V G+
Sbjct: 357 VLSA-TGQRRVLQDAVNHFK-RIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQ 414
Query: 192 RM-EDLE 197
R+ ED++
Sbjct: 415 RVPEDMK 421
>TIGR_CMR|SO_3212 [details] [associations]
symbol:SO_3212 "flagellar biosynthetic protein FlhF"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 182 (69.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 66/187 (35%), Positives = 91/187 (48%)
Query: 17 VILLAGLQGVGKTTVSAKLA-NYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVGVPVY 74
V+ L G GVGKTT AKLA + G + L+ D YR A +QL G+ +G PV
Sbjct: 243 VVALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVK 302
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLL 133
A + QI Q +N +V++DTAG Q D + +L ++ P L
Sbjct: 303 QAHDLAELEQILYQF------RNRKLVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYL 356
Query: 134 VVDAMTGQEAAA--LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
V+ A TGQ V F I ++G +LTKLD ALSV SG P+ V G+
Sbjct: 357 VLSA-TGQRRVLQDAVNHFK-RIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQ 414
Query: 192 RM-EDLE 197
R+ ED++
Sbjct: 415 RVPEDMK 421
>UNIPROTKB|F1MNJ2 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 IPI:IPI00695733
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:DAAA02063109
Ensembl:ENSBTAT00000018762 Uniprot:F1MNJ2
Length = 598
Score = 178 (67.7 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 56/175 (32%), Positives = 86/175 (49%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VIL- 65
RP V+ G+ GVGK+T AK++ +L + G S ++ A D +R A++QL L
Sbjct: 418 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 477
Query: 66 -----GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
G + V ++ G + IA + + A+ + DVV+VDTAGR+Q + +M L
Sbjct: 478 PPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 537
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKLD 165
+ V P VL V +A+ G EA + FN + I G +LTK D
Sbjct: 538 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFD 592
>UNIPROTKB|Q722L6 [details] [associations]
symbol:LMOf2365_0717 "Putative flagellar biosynthesis
protein FlhF" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000897 InterPro:IPR020006 Pfam:PF00448 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
TIGRFAMs:TIGR03499 RefSeq:YP_013321.1 ProteinModelPortal:Q722L6
STRING:Q722L6 GeneID:2797398 KEGG:lmf:LMOf2365_0717 PATRIC:20322642
HOGENOM:HOG000254016 OMA:QFHGKKK ProtClustDB:PRK12726
Uniprot:Q722L6
Length = 407
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 57/216 (26%), Positives = 106/216 (49%)
Query: 1 MGGEVS-ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI 59
+ G+++ E F S +I L G GVGKTT KL L KQ ++ + D +R A+
Sbjct: 191 LSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAV 250
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN-VDVVIVDTAGRLQIDKAMMDE 118
+Q +++ V + A P+++ ++ ++ N VD +++DT GR + + + E
Sbjct: 251 EQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDTVGRNYLAEESVSE 306
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSV 176
+ V++P L +G ++A ++T EI I G I+TK+D +R G +V
Sbjct: 307 ISAYTDVVHPD--LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTV 364
Query: 177 KEVSGKPIKLVGRGERMEDLEPFYPDR--MAGRILG 210
+ + P+ + G+ + + F P +A R +G
Sbjct: 365 MQETNLPVLYMTDGQNITE-NIFRPKSRWLAERFVG 399
>TIGR_CMR|CHY_1010 [details] [associations]
symbol:CHY_1010 "flagellar biosynthesis protein FlhF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0009426 "bacterial-type flagellum basal body, distal rod"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0019861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0017111 GO:GO:0006614
eggNOG:COG1419 KO:K02404 RefSeq:YP_359857.1
ProteinModelPortal:Q3ADC7 STRING:Q3ADC7 GeneID:3728496
KEGG:chy:CHY_1010 PATRIC:21275153 HOGENOM:HOG000254735 OMA:IVESIRI
ProtClustDB:PRK05703 BioCyc:CHYD246194:GJCN-1009-MONOMER
Uniprot:Q3ADC7
Length = 350
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 51/178 (28%), Positives = 84/178 (47%)
Query: 20 LAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT 78
L G GVGKTT AK+A L + K + D +R A++QL I G+ +G V AG+
Sbjct: 161 LIGPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYLGTTVKVAGS 220
Query: 79 EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD-VKRVLNPTEVLLVVDA 137
P ++ + K+ + + +DTAGR + + EL ++ V ++ LV+ A
Sbjct: 221 ---PMELWRA---VQKQNEGETIFIDTAGRPSKKQNQIQELAGFLEAVKKEKDIYLVISA 274
Query: 138 MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 195
E A + G I+TK+D + G +++ KPI +G G+ + D
Sbjct: 275 TVKPEDAEKIAKDFSPCGFNKFIVTKIDETDKFGVLINLIVKFKKPIVYLGVGQNVPD 332
>UNIPROTKB|Q9KQD2 [details] [associations]
symbol:VC_2068 "Flagellar biosynthetic protein FlhF,
putative" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 166 (63.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 63/199 (31%), Positives = 93/199 (46%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGV 71
R V+ L G GVGKTT AKLA + G + LV D YR A +QL I G +G
Sbjct: 281 RGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGC 340
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-E 130
PV A + + + Q +N +++VDTAG Q D + ++L + + T
Sbjct: 341 PVRVAKDSNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIH 394
Query: 131 VLLVVDAMTGQEAAALVTTFNIE-IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 189
LV+ A T Q T + I ++G I+TKLD G +SV + P+ +
Sbjct: 395 SYLVLPA-TAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIAN 453
Query: 190 GERM-EDLEPFYPDRMAGR 207
G+R+ ED+ P M +
Sbjct: 454 GQRVPEDIVIAQPKYMVAK 472
>TIGR_CMR|VC_2068 [details] [associations]
symbol:VC_2068 "flagellar biosynthetic protein FlhF,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 166 (63.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 63/199 (31%), Positives = 93/199 (46%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGV 71
R V+ L G GVGKTT AKLA + G + LV D YR A +QL I G +G
Sbjct: 281 RGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGC 340
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-E 130
PV A + + + Q +N +++VDTAG Q D + ++L + + T
Sbjct: 341 PVRVAKDSNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIH 394
Query: 131 VLLVVDAMTGQEAAALVTTFNIE-IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 189
LV+ A T Q T + I ++G I+TKLD G +SV + P+ +
Sbjct: 395 SYLVLPA-TAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIAN 453
Query: 190 GERM-EDLEPFYPDRMAGR 207
G+R+ ED+ P M +
Sbjct: 454 GQRVPEDIVIAQPKYMVAK 472
>TIGR_CMR|CJE_0061 [details] [associations]
symbol:CJE_0061 "flagellar biosynthetic protein FlhF"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0005525 "GTP binding"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0017111 GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_178086.1 ProteinModelPortal:Q5HX99 STRING:Q5HX99
GeneID:3230824 KEGG:cjr:CJE0061 PATRIC:20041827 OMA:KVATNEY
BioCyc:CJEJ195099:GJC0-65-MONOMER Uniprot:Q5HX99
Length = 484
Score = 161 (61.7 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 61/201 (30%), Positives = 98/201 (48%)
Query: 17 VILLAGLQGVGKTTVSAKLA---NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
+++L G GVGKTT AKLA Y K+ K+ ++ D YR A++QL + + +P+
Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITL-DTYRIGAVEQLFQYAKMMKLPI 342
Query: 74 YTAGTEVKPSQIAKQGLEEAKKK--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-E 130
+ ++P L+EA K N +V++VDT G Q D++ + + K+ N +
Sbjct: 343 IDS---IEPKD-----LDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEID 394
Query: 131 VLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 189
V LVV A T QE + F+ + I I+TK D G S+ + P+
Sbjct: 395 VNLVVSANTKQEDLMEIYKNFSF-LNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSI 453
Query: 190 GERM-EDLEPFYPDRMAGRIL 209
G+ + +DLE D + IL
Sbjct: 454 GQEVPDDLEVANSDFLVHCIL 474
>UNIPROTKB|Q485K6 [details] [associations]
symbol:flhF "Flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_268259.1 ProteinModelPortal:Q485K6 STRING:Q485K6
GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241 OMA:EPRQAWR
BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 161 (61.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 60/190 (31%), Positives = 93/190 (48%)
Query: 13 SRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVG 70
+R V+ L G GVGKTT AKLA + + G + L++ D +R A +QL G+ +G
Sbjct: 294 NRGGVVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIG 353
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD-VKRVLNPT 129
V A K SQ L++ KK + +++DTAG Q D + ++L V
Sbjct: 354 CQVSLA----KDSQALDILLQQYSKKKL--ILIDTAGMGQRDMRLAEQLTALVSNARVRI 407
Query: 130 EVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
LV+ A T Q V F ++ ++G I TKLD G ++ +G PI +
Sbjct: 408 RNYLVLAANTQQGVMQENVDRFK-KVPLSGCIYTKLDESISIGEIITTSIQNGLPIGYLT 466
Query: 189 RGERM-EDLE 197
G+R+ ED++
Sbjct: 467 DGQRVPEDIK 476
>TIGR_CMR|CPS_1517 [details] [associations]
symbol:CPS_1517 "flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 GO:GO:0003924 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009296 GO:GO:0001539 GO:GO:0006614
eggNOG:COG1419 KO:K02404 HOGENOM:HOG000254735 ProtClustDB:PRK05703
TIGRFAMs:TIGR03499 RefSeq:YP_268259.1 ProteinModelPortal:Q485K6
STRING:Q485K6 GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241
OMA:EPRQAWR BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 161 (61.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 60/190 (31%), Positives = 93/190 (48%)
Query: 13 SRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVG 70
+R V+ L G GVGKTT AKLA + + G + L++ D +R A +QL G+ +G
Sbjct: 294 NRGGVVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIG 353
Query: 71 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD-VKRVLNPT 129
V A K SQ L++ KK + +++DTAG Q D + ++L V
Sbjct: 354 CQVSLA----KDSQALDILLQQYSKKKL--ILIDTAGMGQRDMRLAEQLTALVSNARVRI 407
Query: 130 EVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
LV+ A T Q V F ++ ++G I TKLD G ++ +G PI +
Sbjct: 408 RNYLVLAANTQQGVMQENVDRFK-KVPLSGCIYTKLDESISIGEIITTSIQNGLPIGYLT 466
Query: 189 RGERM-EDLE 197
G+R+ ED++
Sbjct: 467 DGQRVPEDIK 476
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 403 393 0.00095 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 539 (57 KB)
Total size of DFA: 166 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.64u 0.15s 39.79t Elapsed: 00:00:01
Total cpu time: 39.65u 0.15s 39.80t Elapsed: 00:00:02
Start: Sat May 11 14:37:42 2013 End: Sat May 11 14:37:44 2013