BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015657
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 230/348 (66%), Gaps = 7/348 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 85 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 144
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 145 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 204
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 205 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 264
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 265 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 324
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 325 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 383
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
+ER KPE++ S R++R+A G Q V++L+ Q M+ MK +
Sbjct: 384 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 429
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/342 (49%), Positives = 228/342 (66%), Gaps = 7/342 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
+ER KPE++ S R++R+A SG Q V++L+ Q M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQ 424
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 290 bits (743), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 231/344 (67%), Gaps = 13/344 (3%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPI G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A + K++
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL--- 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER
Sbjct: 321 --SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEER 374
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 375 KDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 214/330 (64%), Gaps = 16/330 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS- 239
GKPI G E+ E LEPFYP+R+AGRILGMGD+ S +EK + + E+ +++QKK+
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDIESILEKVKGL---EEYDKIQKKMEDV 320
Query: 240 ----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAM 291
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++ A
Sbjct: 321 MEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAA 380
Query: 292 IEAMTPEEREKPELLAESPVRRKRVAQDSG 321
+ +MT +E E P ++ +S R +R+A+ SG
Sbjct: 381 LNSMTYKELENPNIIDKS--RMRRIAEGSG 408
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E +L + VILL G+QG GKTT +AKLA Y++K+G L+A D YRPAA +
Sbjct: 85 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP+Y T K P I K+G+E+ KK DV+I+DTAGR + +K +++E+
Sbjct: 145 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEM 202
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
K +K + NP E++LV+D GQ+A F +G G+I+ TKLDG ++GG ALS
Sbjct: 203 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+ PIK +G GE ++DLEPF P + R+LGMGD+ S +EKA++ M E EE IM
Sbjct: 263 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIM 321
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
F N+ + Q + MGSM +++ MIPG G P ++ E +K + +I +MT
Sbjct: 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 381
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 382 EERENPKIIKASRIR--RIARGSGTTENDVREVL 413
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E +L + VILL G+QG GKTT +AKLA Y++K+G L+A D YRPAA +
Sbjct: 85 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP+Y T K P I K+G+E+ KK DV+I+DTAGR + +K +++E+
Sbjct: 145 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEM 202
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
K +K + NP E++LV+D GQ+A F +G G+I+ TKLDG ++GG ALS
Sbjct: 203 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+ PIK +G GE ++DLEPF P + R+LGMGD+ S +EKA++ M E EE IM
Sbjct: 263 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIM 321
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
F N+ + Q + MGSM +++ MIPG G P ++ E +K + +I +MT
Sbjct: 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 381
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 382 EERENPKIIKASRIR--RIARGSGTTENDVREVL 413
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 203/335 (60%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A QL L ++ +
Sbjct: 97 KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++AK+G++ K K VD++IVDTAGR + DKA+++E+K + V++P EV
Sbjct: 157 EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQ 250
+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q
Sbjct: 277 KIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P V E+ LK + ++++MT EE PE++ S
Sbjct: 337 LEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 397 --RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 2/217 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF 217
GKPI G E+ E LEPFYP+R+AGRILGMGDV S
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASL 300
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/214 (55%), Positives = 153/214 (71%), Gaps = 2/214 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214
GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/214 (55%), Positives = 153/214 (71%), Gaps = 2/214 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214
GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/213 (54%), Positives = 152/213 (71%), Gaps = 2/213 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 213
GKPI G E+ E LEPFYP+R+AGRILGMGD
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD 296
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 197/332 (59%), Gaps = 16/332 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT + KLA + KK+G LVA DVYRPAA D
Sbjct: 90 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD 149
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GV VY P +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 150 QLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 209
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ VL P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 210 MKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 269
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ +++QKK+
Sbjct: 270 ATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGL---EEYDKIQKKME 326
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 327 DVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWL 386
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321
A + +MT +E E P ++ +S R +R+A+ SG
Sbjct: 387 AALNSMTYKELENPNIIDKS--RMRRIAEGSG 416
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 197/332 (59%), Gaps = 16/332 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT + KLA + KK+G LVA DVYRPAA D
Sbjct: 83 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD 142
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GV VY P +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 143 QLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 202
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ VL P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 203 MKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ +++QKK+
Sbjct: 263 ATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGL---EEYDKIQKKME 319
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 320 DVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWL 379
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321
A + +MT +E E P ++ +S R +R+A+ SG
Sbjct: 380 AALNSMTYKELENPNIIDKS--RMRRIAEGSG 409
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212
GKPI G E+ E LEPFYP+R+AGRILGMG
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 85 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 143 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 202
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 203 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 262
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212
GKPI G E+ E LEPFYP+R+AGRILGMG
Sbjct: 263 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 294
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 150/211 (71%), Gaps = 2/211 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211
GKPI G E+ E LEPFYP+R+AGRILGM
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGM 294
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/211 (54%), Positives = 150/211 (71%), Gaps = 2/211 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 85 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 143 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 202
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 203 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 262
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211
GKPI G E+ E LEPFYP+R+AGRILGM
Sbjct: 263 GKPIYFAGVSEKPEGLEPFYPERLAGRILGM 293
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 197/350 (56%), Gaps = 9/350 (2%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
P Y + TE+ P IA +G+E+ K +N +++IVDT+GR + + ++ +E+ V + P +
Sbjct: 158 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNI 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+ V+DA GQ A F ++ + I+TKLDG ++GG ALS + PI +G GE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQF 336
Query: 252 RTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LL 306
+ + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + +
Sbjct: 337 QNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 396
Query: 307 AESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 353
++ P R +RVA+ SG + + V +L+ Q QM +M + G+ +GG +
Sbjct: 397 SKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 99 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 158
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 159 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 218
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 219 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 278
Query: 189 RGERMEDLEPFYPD 202
GER+EDL PF D
Sbjct: 279 VGERIEDLRPFKAD 292
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 124/205 (60%), Gaps = 6/205 (2%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 353 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 412
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 413 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 472
Query: 189 RGERMEDLEPFYPDRMAGRILGMGD 213
GER+EDL PF D + D
Sbjct: 473 VGERIEDLRPFKADDFIEALFARED 497
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 98 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 157
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 158 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 217
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 218 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 277
Query: 189 RGERMEDLEPFYPD 202
GER+EDL PF D
Sbjct: 278 VGERIEDLRPFKAD 291
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 93 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 152
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 153 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 212
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 213 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 272
Query: 189 RGERMEDLEPFYPD 202
GER+EDL PF D
Sbjct: 273 VGERIEDLRPFKAD 286
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 115/197 (58%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
+P VI+ G G GKTT AKLAN+LK G S ++ A D +R AI+QL +++GV V
Sbjct: 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
P+ +A ++ AK + +DVV++DTAGR + ++ +MDE+K + RV P V+
Sbjct: 188 IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIF 247
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
V DA+ G FN + I G ILTKLD D+RGGAALS+ V PI VG G+
Sbjct: 248 VGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307
Query: 194 EDLEPFYPDRMAGRILG 210
+DL PF + RI G
Sbjct: 308 DDLRPFEKEWFLERIFG 324
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 112/197 (56%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
+P VI G G GKTT AKLAN+LK G S ++ A D +R AI+QL +++GV V
Sbjct: 128 KPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187
Query: 74 YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
P+ +A ++ AK + +DVV++DTAGR + ++ + DE K + RV P V+
Sbjct: 188 IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLXDEXKKIARVTKPNLVIF 247
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
V DA+ G FN + I G ILTKLD D+RGGAALS+ V PI VG G+
Sbjct: 248 VGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307
Query: 194 EDLEPFYPDRMAGRILG 210
+DL PF + RI G
Sbjct: 308 DDLRPFEKEWFLERIFG 324
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+EL +P VI++ G+ G GKTT KLA+ LK +G ++ AGD +R AA DQL I
Sbjct: 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207
Query: 66 GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
E+ G + A G + K + + + ++ K++ DVV+ DT+GRL + ++M+EL K+
Sbjct: 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 267
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+ P E+LLV+D TG FN +GITG ILTKLDG +RGG +SV E
Sbjct: 268 AVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 327
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
G P+K +G GE +EDL+PF P+ I
Sbjct: 328 ELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 358
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+EL +P VI++ G+ G GKTT KLA+ LK +G ++ AGD +R AA DQL I
Sbjct: 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 150
Query: 66 GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
E+ G + A G + K + + + ++ K++ DVV+ DT+GRL + ++M+EL K+
Sbjct: 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 210
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+ P E+LLV+D TG FN +GITG ILTKLDG +RGG +SV E
Sbjct: 211 AVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 270
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
G P+K +G GE +EDL+PF P+ I
Sbjct: 271 ELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 7/201 (3%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
+EL SRP V+++ G+ G GKTT KLAN KK+G ++ AGD +R AA +QL +
Sbjct: 107 TELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVW 166
Query: 66 GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
++ G + A G + +P+ + Q + A +++ DVV+ DT+GRL + +M+EL+ KR
Sbjct: 167 AQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKR 226
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
++ P EVLLV+D TG A FN IG+TG ILTKLDG +RGG +SV +
Sbjct: 227 AVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVD 286
Query: 179 VSGKPIKLVGRGERMEDLEPF 199
P+K VG GE ++DL+PF
Sbjct: 287 ELSIPVKFVGVGEGIDDLQPF 307
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 131/210 (62%), Gaps = 2/210 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++
Sbjct: 84 FGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL LG+Q+GVPVY E IAK+G+E+ + ++++IVDTAGR + A+++E
Sbjct: 144 QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEE 203
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ + P EV LV+DA GQ+A L + FN I I+TK+DG ++GG ALS
Sbjct: 204 MKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRI 208
+G IK +G GE++++LE F P R R+
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 130/210 (61%), Gaps = 2/210 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P VI+L G+QG GK T + KLA + KK+G LV DVYRPAA++
Sbjct: 84 FGGDKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL LG+Q+GVPVY E IAK+G+E+ + ++++IVDTAGR + A+++E
Sbjct: 144 QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEE 203
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ + P EV LV+DA GQ+A L + FN I I+TK+DG ++GG ALS
Sbjct: 204 MKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRI 208
+G IK +G GE++++LE F P R R+
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 6/194 (3%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P VI++ G+ G GKTT KLA +GKS +L A D +R AAI+QL I GE+VG V
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
+ P+ +A + A +N DVVI+DTAGRL K +M+EL+ V RV+ P
Sbjct: 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAP 223
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
E LLV+DA TGQ F + +TG ILTKLDG ++GG L++ G PIK +G
Sbjct: 224 HETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIG 283
Query: 189 RGERMEDLEPFYPD 202
GE+ EDL PF P+
Sbjct: 284 VGEKAEDLRPFDPE 297
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 28 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 174
Query: 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 202 D 202
+
Sbjct: 295 E 295
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 28 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 95 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 154
Query: 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 155 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 214
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 215 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 274
Query: 202 DRMAGRIL 209
+ +L
Sbjct: 275 EAFVEALL 282
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 28 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 114 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 173
Query: 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 174 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 233
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 234 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 293
Query: 202 D 202
+
Sbjct: 294 E 294
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 28 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 94 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 153
Query: 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 154 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 213
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 214 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 273
Query: 202 DRMAGRIL 209
+ +L
Sbjct: 274 EAFVEALL 281
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-----VI 64
F ++R + +L G+ G GKTT AK+ANY + G ++ A D +R A QL
Sbjct: 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159
Query: 65 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
L +V + V P+ + +++AK++N D++++DTAGRLQ +M EL+ + +
Sbjct: 160 LNNKVDL-VKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNK 218
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
++ P EVLLV+DA TGQ F+ ++G ILTK+D S+GG L++KE
Sbjct: 219 IIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKE 278
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDR 203
+ PIK++G GE+++DL F D+
Sbjct: 279 LLNIPIKMIGVGEKVDDLLAFDIDQ 303
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 28 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
KTT AKL Y + GK M AGD +R A QL G+++ +PV + +A
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAY 174
Query: 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 202 D 202
+
Sbjct: 295 E 295
>pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rna Recognition By A
Universally Conserved Protein From The Signal
Recognition Particle
Length = 105
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +E
Sbjct: 2 FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKE 60
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
R KPE++ S R++R+A SG Q V++L+ Q M+
Sbjct: 61 RAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQ 97
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 18 ILLAGLQGVGKTTVSAKLA--NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 75
I+L G G GKTT AKLA + L+K K + D YR AA++QL E + P+
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV 166
Query: 76 AGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
T K+ ++AK+ D V VDTAGR D +DELK+ + + L
Sbjct: 167 CYT--------KEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFL 218
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
V+ A E + + + I TK+D + G+ ++ S + + G+ +
Sbjct: 219 VLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNV 278
Query: 194 -EDLEPFYP 201
ED++ P
Sbjct: 279 PEDIQTVSP 287
>pdb|2PXB|A Chain A, Variant 2 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXD|A Chain A, Variant 1 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXE|A Chain A, Variant 4 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXF|A Chain A, Variant 5 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXK|A Chain A, Variant 8 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXL|A Chain A, Variant 9 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXP|A Chain A, Variant 13 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXQ|A Chain A, Variant 14 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXT|A Chain A, Variant 15 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXU|A Chain A, Variant 16 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXV|A Chain A, Variant 6 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
Length = 102
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
FD NDFL+Q R + G + + G +PG G+I P V+ +K L EA+I + T +E
Sbjct: 1 FDLNDFLEQLRQMKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 59
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
R KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 60 RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 92
>pdb|3LQX|A Chain A, Srp Ribonucleoprotein Core Complexed With Cobalt Hexammine
Length = 105
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
FD NDFL+Q R G + + G +PG G+I P V+ +K L EA+I + T +E
Sbjct: 2 FDLNDFLEQLRQXKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 60
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
R KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 61 RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 93
>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex
Of Human Signal Recognition Particle
Length = 129
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTP 297
F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M
Sbjct: 13 GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMND 72
Query: 298 EEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
+E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+
Sbjct: 73 QELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 125
>pdb|1QB2|A Chain A, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
pdb|1RY1|W Chain W, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
pdb|2GO5|W Chain W, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEE 299
F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E
Sbjct: 2 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 61
Query: 300 REKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
+ + + ++ P R +RVA+ SG + + V +L+ Q
Sbjct: 62 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQY 99
>pdb|2JQE|A Chain A, Soution Structure Of Af54 M-Domain
Length = 119
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIP-GMGKITPAQVRE-AEKSLKIMEAMIEAMTPEE 299
F D KQ + +MG + ++ M+P G+G V E ++ +K ++++MT EE
Sbjct: 10 FTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEE 69
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
P+++ S +R R+A SG + Q+V +L+
Sbjct: 70 LLNPKIIDSSRIR--RIAIGSGTSPQEVKELL 99
>pdb|2XKV|C Chain C, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 69
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 282 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 341
+K L MEA+I +MT +ER KPE++ S R++R+A SG Q V++L+ Q M+ M
Sbjct: 9 QKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMM 66
Query: 342 KNL 344
K +
Sbjct: 67 KKM 69
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
R I L GL G GKTTVS L YL G C + GD R
Sbjct: 32 RGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 73
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1 In Complex With
Cyclic Paps And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1 In Complex With
Cyclic Paps And Dadp
Length = 179
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 31 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 72
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 40/187 (21%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
PT++++ GL GKT +S KL YL
Sbjct: 3 PTMVIMVGLPARGKTYISTKLTRYLN---------------------------------- 28
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTE-VL 132
GT K + + E KN + + D LQI K + LKDV L+ E +
Sbjct: 29 FIGTPTKVFNLGQYRREAVSYKNYEFFLPDNMEALQIRKQCALAALKDVHNYLSHEEGHV 88
Query: 133 LVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS-GKPIKL-VGR 189
V DA T +E +L+ F E G + + D G A ++++V G P + R
Sbjct: 89 AVFDATNTTRERRSLILQFAKEHGYKVFFIESICNDP-GIIAENIRQVKLGSPDYIDCDR 147
Query: 190 GERMEDL 196
+ +ED
Sbjct: 148 EKVLEDF 154
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
V+ L GL G GKTT++ +LA+ L+K+G ++ GD R
Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
R + L GL G GKTT+S L YL C + GD R
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVR 62
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
VI + GL G GK+T++ L L ++GK C ++ GD R
Sbjct: 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52
F ++ P + G GVGKT++S A L +QGK +LV+ D
Sbjct: 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58
A++ +I+L G GVGKTT++A +A L G L D PAA
Sbjct: 322 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAA 367
>pdb|1DUL|A Chain A, Structure Of The Ribonucleoprotein Core Of The E. Coli
Signal Recognition Particle
Length = 69
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 282 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
+K L EA+I + T +ER KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 9 QKVLVRXEAIINSXTXKERAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 59
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase
Of Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
PTVI++ GL GKT +S KL YL G + YR A+ Q
Sbjct: 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
+I+L GL GVGK+T S LA L K +++ D+ R +
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr78
Length = 361
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52
T+ GVGKTT+S +A+Y QGK + V D
Sbjct: 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
+I+L GL GVGK+T S LA L K +++ D+ R +
Sbjct: 13 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 53
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
+ L GL GK+T++ LA L+ +G+ L+ GDV R
Sbjct: 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation
Protein Soj
Length = 257
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 25 GVGKTTVSAKLANYLKKQGKSCMLV 49
GVGKTT + LA YL + GK +LV
Sbjct: 17 GVGKTTTAINLAAYLARLGKRVLLV 41
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein
Af_226 In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein
Af_226 In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
+ + +G GVGK+TV+A LA + KQGK ++ D P+
Sbjct: 21 IAVXSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPS 61
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation
Protein Soj
Length = 257
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 25 GVGKTTVSAKLANYLKKQGKSCMLV 49
GVGKTT + LA YL + GK +LV
Sbjct: 17 GVGKTTTAINLAAYLARLGKRVLLV 41
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And
Phosphate
Length = 469
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQG 43
PT+I++ GL GKT +S KL YL G
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Empty 6-Pf-2k Active Site
Length = 468
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQG 43
PT+I++ GL GKT +S KL YL G
Sbjct: 38 PTLIVMVGLPARGKTYISKKLTRYLNFIG 66
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQG 43
PT+I++ GL GKT +S KL YL G
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDVYR 55
+ GL G GK+T++ LA L + G C+ L+ GD+ R
Sbjct: 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
KSR + + +G GVGK+TV+A LA + +QGK ++ D P+
Sbjct: 18 KSR--IAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS 61
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 17 VILLAGLQG-VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
+I +A +G VGKTT + L+ YL QG++ +L+ GD R A
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQGET-LLIDGDPNRSA 42
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 149 TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEP--FYPDRMAG 206
+ + IG +G+ + +G+ G V +G + + +GER+E+ P + P+ +
Sbjct: 181 SLDYPIGTSGSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKK 240
Query: 207 RILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGM 266
R L + D+ K + ++ Q + +QK++ +A L TR VA M+ +
Sbjct: 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTA------VLAPTRVVA--AEMAEALRG 292
Query: 267 IPGMGKITPAQVREAEKSLKIMEAMIEA 294
+P + +TPA RE + +I++ M A
Sbjct: 293 LP-VRYLTPAVQREHSGN-EIVDVMCHA 318
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 73
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 198 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 250
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 73
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 199 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 251
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 73
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 375 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 427
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLV 63
T+ + +G G GKTT++A L L + G +V D+ P + Q V
Sbjct: 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTL-QNV 62
Query: 64 ILGE-QVGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVV---IVDTAGRLQIDKAMMD 117
+ GE ++ +Y G +V P+ ++ +GL +A + ++ V I+++ L +D
Sbjct: 63 LAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGL 122
Query: 118 ELKDVKRVLNPTEVLLVVD 136
E V + E+LLVV+
Sbjct: 123 ERSAVIAIAAAQELLLVVN 141
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCML 48
I G+ G GK+T LA YL+K+GK +L
Sbjct: 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCML 48
+I G+ G GKTT + KL YLK++G L
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG-RLQIDKAMMDE 118
DQ+ L +Q + AG P + L+ A+ + I D+ G +L +D A +
Sbjct: 162 DQVEALAQQHKPSLIIAGFSAYPRK-----LDFARFR----AIADSVGAKLMVDMAHIAG 212
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEA----AALVTTFNIEIG--ITGAILTKLDGDSRGGA 172
+ R NP E VV + T + V T + EI I A+ L +GG
Sbjct: 213 VIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGL----QGGP 268
Query: 173 ALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 215
+ V ++GK + GE + D Y DR+ +GDVL
Sbjct: 269 LMHV--IAGKAVAF---GEALTDDFKTYIDRVLANAQALGDVL 306
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 20 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV-------- 71
+ G G GK+T L ++G ++A D P ILG++ +
Sbjct: 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS--ILGDKTRMNDLARAEA 118
Query: 72 ----PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 127
PV ++G SQ A++ + + DVVIV+T G Q +
Sbjct: 119 AFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ----------------S 162
Query: 128 PTEVLLVVDAMTGQEAAALVTTFN-IEIGITGA----ILTKLDGDSRGGAALSVKEVSGK 182
TEV +VD + A I+ G+ ++ K DGD+ A++ + +
Sbjct: 163 ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIA-RHMYES 221
Query: 183 PIKLVGRGERMEDLEPFY----------PDRMAGRILGMGDVLSFVEKAQEVMQQEDAEE 232
+ ++ R + ++ +P D + I+ L+ + Q+V QQ+ E
Sbjct: 222 ALHILRR--KYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEW 279
Query: 233 MQKKI-------MSANFDFNDFLKQTRTVARMGSMSRVIGM 266
++K+ + AN DF+ + +QT + ++S G+
Sbjct: 280 LRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGL 320
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 6 SELVFAKSRP---TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
S ++FA ++++ + G GK+T++A LA + G ++V GD+ +P
Sbjct: 71 SNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPT 125
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANY-LKKQGKSCMLVA 50
E+++AK + T L+ G+GKT ++ +A Y L K G +++A
Sbjct: 15 EVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53
+++G G GKTTV+A L+ L +G+ + V GD+
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 23 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 77
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Query: 78 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 123
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 23 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 77
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 59 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 78 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 123
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 23 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 77
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126
Query: 78 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 123
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 23 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 77
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 78 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 123
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49
+++ +G GVGKTT SA +A L ++GK +++
Sbjct: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53
+++G G GKTTV+A L+ L + G+ + V GD+
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDL 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,607,971
Number of Sequences: 62578
Number of extensions: 416015
Number of successful extensions: 1389
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 166
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)