BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015657
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/403 (86%), Positives = 384/403 (95%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521
Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
DALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/338 (58%), Positives = 259/338 (76%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
MG L A+ PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAID
Sbjct: 86 MGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAID 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL LG+Q+ VPV+ G++ P +IA+QG+E+AK+ VD V++DTAGRLQID MM EL
Sbjct: 146 QLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELA 205
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
++K+V+ P + LLVVDAMTGQEAA L TF+ +IGITGAILTKLDGD+RGGAALSV+++S
Sbjct: 206 EIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQIS 265
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE + D E++Q KI+ A
Sbjct: 266 GQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEA 325
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
FDF+DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI +MT EER
Sbjct: 326 TFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEER 385
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
+ P+LLA+SP RR+R+AQ SG +E VS+L+ +MR
Sbjct: 386 KNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMR 423
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/325 (60%), Positives = 253/325 (77%), Gaps = 1/325 (0%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
MG L A PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAID
Sbjct: 86 MGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAID 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL+ LG+Q+ VPV+ G++ P +IA+QG+E+A+++ +D VIVDTAGRLQID MM+EL
Sbjct: 146 QLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDTAGRLQIDTEMMEELA 205
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
VK + P EVLLVVD+M GQEAA+L +F+ IGITGAILTKLDGDSRGGAALS++ VS
Sbjct: 206 QVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVS 265
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE + D E+MQ+KI++A
Sbjct: 266 GQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAA 325
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEE 299
FDF DFLKQ R + MGS++ I +IPG+ GKI Q+R+ E+ LK +EAMI +MTP+E
Sbjct: 326 KFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQE 385
Query: 300 REKPELLAESPVRRKRVAQDSGKTE 324
R P+LL+ SP RR R+A+ G+TE
Sbjct: 386 RRDPDLLSNSPSRRHRIAKGCGQTE 410
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 257/352 (73%), Gaps = 4/352 (1%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
MGGE S++ AK PTVI++ GLQG GKTT S KLAN L KK + MLVA D+YRPAAI
Sbjct: 87 MGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAI 146
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL LG+Q+ +PV++ G +V P +IAKQ +E+AK+++ D VI+DTAGRL ID +MDEL
Sbjct: 147 KQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDEL 206
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
+VK + NP E+ LVVD+MTGQ+A + +FN ++G+TG +LTKLDGD+RGGAALS++ V
Sbjct: 207 TNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAV 266
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+ PIK G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ + ++ A+E+++K+ +
Sbjct: 267 TNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRT 326
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPE 298
+F +DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I++MT
Sbjct: 327 MSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVL 386
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
E+E+P+++ S RRKR+A+ SG + Q+V++L+ Q +M+ MK + + +G
Sbjct: 387 EKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 243/353 (68%), Gaps = 9/353 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
+G E +E+ + PT+I++ GLQG GKTT + KLAN L K++ +++A D+YRPAAI
Sbjct: 87 LGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAI 146
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
DQL LG+Q+ VPV+ GTE +I QGL +AK+ D V++DTAGRLQID+ +M EL
Sbjct: 147 DQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMTEL 206
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
+D+K + NP E+LLVVD+M GQEAA + FN ++ +TG ILTK+DGD+RGGAALSV+++
Sbjct: 207 RDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQI 266
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ + E+ +K+
Sbjct: 267 TGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRE 326
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTP 297
+FDFNDF++Q V MGSM ++ MIPGM P A V+ E + A++ +MTP
Sbjct: 327 NSFDFNDFIEQLDQVQNMGSMEDILKMIPGMAN-NPALANVKVDEGEIARKRAIVSSMTP 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
EERE P+LL +P RR+R+A SG T V++ + Q + K + GVM G
Sbjct: 386 EERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAK---KMMQGVMSG 433
>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain
TN) GN=ffh PE=3 SV=1
Length = 521
Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 234/355 (65%), Gaps = 9/355 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE +L FAK+ PTV++LAGLQG GKTT++ KLA L++QG + +LVA D+ RPAA++
Sbjct: 86 LGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVN 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
QL ++GE+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID
Sbjct: 146 QLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASAGLVEARAKHFDVVIVDTAGRLGIDD 205
Query: 114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
+M + ++ +NP EVL V+DAM GQ+A F +G TG +LTKLDGD+RGGAA
Sbjct: 206 ELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAA 265
Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
LSV+EV+G PI GE+++D + F+PDRMA RILGMGDVLS +E+A++V E AE
Sbjct: 266 LSVREVTGVPILFATTGEKLDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAA 325
Query: 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
KI++ DFL+Q V +MG + ++GM+PG G++ + +K L ++A+I
Sbjct: 326 AAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIR 385
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 348
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
+ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
+ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI
Sbjct: 86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L EQVGV + + KP I L+EAK K DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
+ FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
+ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 231/348 (66%), Gaps = 9/348 (2%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL +L
Sbjct: 85 SGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVL 144
Query: 66 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
GEQVGV V+ + +IA L+ AK+ DV+IVD+AGRL IDK +M ELK+VK V
Sbjct: 145 GEQVGVEVFHEENK-SVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEV 203
Query: 126 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
LNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL + G P++
Sbjct: 204 LNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLR 263
Query: 186 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 245
+G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+ F FN
Sbjct: 264 FIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFN 323
Query: 246 DFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREK 302
DFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +ERE
Sbjct: 324 DFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEREN 383
Query: 303 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 347
PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 384 PEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|P66844|SRP54_MYCTU Signal recognition particle protein OS=Mycobacterium tuberculosis
GN=ffh PE=1 SV=1
Length = 525
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 9/355 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++
Sbjct: 86 LGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVN 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
QL ++GE+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID+
Sbjct: 146 QLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDE 205
Query: 114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAA
Sbjct: 206 ELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 265
Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
LSV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 266 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEA 325
Query: 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 326 AAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIR 385
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 348
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|P66845|SRP54_MYCBO Signal recognition particle protein OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=ffh PE=3 SV=1
Length = 525
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 9/355 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++
Sbjct: 86 LGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVN 145
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
QL ++GE+ GVPV+ P +A GL EA+ K+ DVVIVDTAGRL ID+
Sbjct: 146 QLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDE 205
Query: 114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAA
Sbjct: 206 ELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 265
Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
LSV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 266 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEA 325
Query: 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 326 AAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIR 385
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 348
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 232/349 (66%), Gaps = 11/349 (3%)
Query: 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL +L
Sbjct: 85 SGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVL 144
Query: 66 GEQVGVPV-YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
GEQVGV V Y VK +IA L+ AK+ DV++VD+AGRL IDK +M ELK+VK
Sbjct: 145 GEQVGVEVFYEENKSVK--EIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKE 202
Query: 125 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184
+LNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL + G P+
Sbjct: 203 ILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPL 262
Query: 185 KLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF 244
+ +G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+ F F
Sbjct: 263 RFIGSGEKIPDLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTF 322
Query: 245 NDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEERE 301
NDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +E+E
Sbjct: 323 NDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQE 382
Query: 302 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 347
PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 383 NPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 239/361 (66%), Gaps = 15/361 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE ++L + +L GLQG GKTT K+AN LKK G + + D+ RPAA+
Sbjct: 86 LGGEKADL-----KKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAML 140
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L E+VGVP Y + +IA++ ++ AK+++VD +++DTAGRL +D+ +M EL+
Sbjct: 141 QLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKEESVDYLLLDTAGRLHVDEELMKELQ 200
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
++K V NP+E+L V DAM GQ A TF+ +G+TG ++TK+DGD+RGG ALSVKEV
Sbjct: 201 EIKEVTNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVL 260
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
G PIK +G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M K+M+
Sbjct: 261 GVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTG 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPE 298
FD D + R + +MG + +++ MIPG + P ++ EK K +EA+I +MTPE
Sbjct: 321 EFDLEDLREMLRMIQQMGPLDKLLSMIPG---VAPQLKHLKVDEKQFKKIEAIINSMTPE 377
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSN 358
ER P+++ S R+KR+A+ SG T V++L+ + +M+ M+ L + G +PA+
Sbjct: 378 ERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGGMPAIPK 432
Query: 359 L 359
+
Sbjct: 433 M 433
>sp|Q92J55|SRP54_RICCN Signal recognition particle protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ffh PE=3 SV=1
Length = 449
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 155/331 (46%), Positives = 222/331 (67%), Gaps = 6/331 (1%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P L+ GLQG GKTT S+KLA L+ Q K +LV+ D YRPAA +QL IL V +
Sbjct: 102 PVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSL 161
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
KP I K+ + EAK DVVI DTAGR QIDKAMM+E +K+++ PTE LLV
Sbjct: 162 PIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVEPTETLLV 221
Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE +
Sbjct: 222 IDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLI 281
Query: 195 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTV 254
DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++
Sbjct: 282 DLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSI 341
Query: 255 ARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPV 311
+MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER+ P+++ S
Sbjct: 342 KKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS-- 398
Query: 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 399 RRKRIAVGAGTTVQKVNILLKQYKQISEIMK 429
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 291 bits (744), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 231/344 (67%), Gaps = 13/344 (3%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+GGE + L K R + L GLQG GKTT +AKLA Y K +G+ +LVA D RPAA +
Sbjct: 86 LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL +LGE+VGVPV P I ++ E+A+ + D+++VDTAGRLQID+ +M EL
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
+K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPI G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A + K++
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL--- 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER
Sbjct: 321 --SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEER 374
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 375 KDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>sp|Q4UKH4|SRP54_RICFE Signal recognition particle protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ffh PE=3 SV=2
Length = 449
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 6/331 (1%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P L+ GLQG GKTT S+KLA LK Q K +LV+ D YRPAA +QL IL V +
Sbjct: 102 PVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSL 161
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
KP I K+ + EAK VVI DTAGR QIDK MM+E +K+++ PTE LLV
Sbjct: 162 PIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQIDKEMMEEALAIKKIVEPTETLLV 221
Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
+D+MTGQ+A +FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE++
Sbjct: 222 IDSMTGQDAVVTANSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLT 281
Query: 195 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTV 254
DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++
Sbjct: 282 DLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSI 341
Query: 255 ARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPV 311
+MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ERE P+++ S
Sbjct: 342 KKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS-- 398
Query: 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 399 RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429
>sp|Q9ZDZ0|SRP54_RICPR Signal recognition particle protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ffh PE=3 SV=1
Length = 449
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 221/331 (66%), Gaps = 6/331 (1%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL I+ V +
Sbjct: 102 PVNLLIVGLQGGGKTTASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSL 161
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
KP I K+ + EA+ DVVI DTAGR+QID MM+E +K++LNPTE LLV
Sbjct: 162 PIVKGEKPLDIVKRAIGEAQISAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLV 221
Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
+D+MTGQ+A TF+ ++ I+G IL+++DGD++GGAALSVK + KPIK + GE++
Sbjct: 222 IDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLT 281
Query: 195 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTV 254
DLE F +R+A RIL MGD++SFV+KA ++ +E+AE+ K+ S FD ND+L+Q R++
Sbjct: 282 DLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSI 341
Query: 255 ARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPV 311
+MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ER+ P+++ S
Sbjct: 342 KKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS-- 398
Query: 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 399 RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|Q1RHD6|SRP54_RICBR Signal recognition particle protein OS=Rickettsia bellii (strain
RML369-C) GN=ffh PE=3 SV=1
Length = 449
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 219/331 (66%), Gaps = 6/331 (1%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL IL V +
Sbjct: 102 PVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLDTYRPAAQEQLEILANSVKINSL 161
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
KP I K+ + EAK D+VI DTAGR QID+ MM+E +K+++ PTE LLV
Sbjct: 162 PIVKGEKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQIDQEMMNEAIAIKKIVEPTETLLV 221
Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAALSVK ++ +PIK + GE++
Sbjct: 222 IDSMTGQDAVVTASSFNEQLEISGLILSRIDGDSKGGAALSVKYITQRPIKFLSSGEKLT 281
Query: 195 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTV 254
DLE F R+A RIL MGD++SFVEKA ++ +E AE+ K+ FD ND+L+Q +++
Sbjct: 282 DLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSI 341
Query: 255 ARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPV 311
++G ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER P+++ S
Sbjct: 342 KKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS-- 398
Query: 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 399 RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 224/346 (64%), Gaps = 6/346 (1%)
Query: 3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAID 60
GE +E L A P VIL+AGLQG GKTT KLA +L+ + K ++V+ DVYRPAAI
Sbjct: 87 GEANESLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLRERHKKKVLVVSADVYRPAAIK 146
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
QL L + VGV + + + P IAK L +AK K DV+IVDTAGRL +D MMDE+K
Sbjct: 147 QLETLAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDVLIVDTAGRLHVDTEMMDEIK 206
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
V LNP E L VDAMTGQ+AA FN + +TG ILTK+DGD+RGGAALS+++++
Sbjct: 207 QVHAALNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQIT 266
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + +E AE+M +K
Sbjct: 267 GKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMAQKFKKG 326
Query: 241 -NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPE 298
+F +DF +Q + +MG M ++ +PG ++ + + + + MEA+I +MT +
Sbjct: 327 DDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAIINSMTLK 386
Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
ER P+++ S RR+R+A SG Q V++L+ Q +M+ MK +
Sbjct: 387 ERANPDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430
>sp|Q68XJ4|SRP54_RICTY Signal recognition particle protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ffh PE=3 SV=1
Length = 449
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 219/331 (66%), Gaps = 6/331 (1%)
Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL I+ V +
Sbjct: 102 PVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSL 161
Query: 75 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
+P I K+ + EAK DVVI DTAGR+QID MM+E +K++LNPTE LLV
Sbjct: 162 PIVQGEQPLDIVKRAISEAKIFAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLV 221
Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
+D+MTGQ+A +F+ ++ I+G IL+++DGD++GGAALSVK ++ KPIK + GE++
Sbjct: 222 IDSMTGQDAVVTARSFSDKLEISGLILSRIDGDTKGGAALSVKYLTQKPIKFLSCGEKLT 281
Query: 195 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTV 254
DLE F +R+A RIL MGD++SFV+KA ++ +E+AE K+ S FD ND+LK R++
Sbjct: 282 DLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSI 341
Query: 255 ARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPV 311
+MG ++ M+PG GKI Q+ +++ +I+ EA+I +MT +ER+ P+++ S
Sbjct: 342 KKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS-- 398
Query: 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 399 RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|P75054|SRP54_MYCPN Signal recognition particle protein OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ffh PE=3 SV=1
Length = 450
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 212/342 (61%), Gaps = 2/342 (0%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVP 72
RP +++ GLQG GKTT KLA +LKKQ + MLVA D+YRPAAIDQL L EQ
Sbjct: 98 RPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQTESV 157
Query: 73 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
+ GT+ P Q K+ ++ K+ +I DTAGRLQ ++ +MDEL +K L+P E+L
Sbjct: 158 FFAKGTQA-PDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELVAIKNELHPDEIL 216
Query: 133 LVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192
+VVD ++GQE + F+ + +TG I+TKLD D+R GAALS+ + PIKL+G E+
Sbjct: 217 MVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAALSLTSLLEVPIKLMGTSEK 276
Query: 193 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 252
+ LE F+P+R+A RILG+GDV++ VEKA+EV ++ + K+ D D L
Sbjct: 277 LTGLEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYME 336
Query: 253 TVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVR 312
+ +MGS+S ++ M+PG ++ V E +K+ + +I +MT EER P+L+ P R
Sbjct: 337 QMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSR 396
Query: 313 RKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 354
++R+ + SG+ ++++L+ + +++ + + +++GG P
Sbjct: 397 KQRIIKGSGRKMDELNKLMKEWSKLQTKTAEMGRMLKGGKNP 438
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 228/345 (66%), Gaps = 4/345 (1%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVP 72
+P+V+++ GLQG GKTT + KLA L K+ K +L+ G D+YRP AI+QLV LG++
Sbjct: 100 KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQ 159
Query: 73 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
V+ G + P + A+Q LE AK+ N DVVI+DTAGRLQ+D+ +M EL ++K+ +P E+L
Sbjct: 160 VFEKGKQ-DPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLMKELDNLKKKTSPNEIL 218
Query: 133 LVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192
LVVD M+GQE + FN ++ ++G ++TKLDGD+RGGA LS+ ++ PIK +G GE
Sbjct: 219 LVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEG 278
Query: 193 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 252
L FYP RMA R++GMGD+ + E+A E + + ++ ++ FD D Q
Sbjct: 279 YNALAAFYPKRMADRLMGMGDIETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLA 338
Query: 253 TVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVR 312
+A+MGS+++++ M+P + K++ +Q++EA++ L + ++++MT +ER P +L ++ R
Sbjct: 339 QIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDSMTLKERRDPRVL-KAISR 396
Query: 313 RKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALS 357
+ R+ + SG++E++ ++L+ + + ++ + +++ G +P LS
Sbjct: 397 KNRIIKGSGRSEKEFNELINSFEKGKKQVLEITKMIKSGRMPNLS 441
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 254 bits (649), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E +L + VILL G+QG GKTT +AKLA Y++K+G L+A D YRPAA +
Sbjct: 86 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP+Y T K P I K+G+E+ KK DV+I+DTAGR + +K +++E+
Sbjct: 146 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
K +K + NP E++LV+D GQ+A F +G G+I+ TKLDG ++GG ALS
Sbjct: 204 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+ PIK +G GE ++DLEPF P + R+LGMGD+ S +EKA++ M E EE IM
Sbjct: 264 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIM 322
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
F N+ + Q + MGSM +++ MIPG G P ++ E +K + +I +MT
Sbjct: 323 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 382
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 383 EERENPKIIKASRIR--RIARGSGTTENDVREVL 414
>sp|P47294|SRP54_MYCGE Signal recognition particle protein OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ffh PE=3 SV=1
Length = 446
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 211/342 (61%), Gaps = 2/342 (0%)
Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDVYRPAAIDQLVILGEQVGVP 72
RP I++ GLQG GKTT KLA +L+K+ K MLV D+YRPAAI+QL L +Q
Sbjct: 98 RPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSV 157
Query: 73 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
+ GT+ ++ K L K +I DTAGRLQ ++ +MDEL VK LNP E++
Sbjct: 158 FFAQGTQ-PVAKTTKAALSAFKTAKCQTIICDTAGRLQTNETLMDELVSVKNELNPDEII 216
Query: 133 LVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192
+VVD ++GQE + TF+ + +TG I++KLD D+R GAALS+ + PIKL+G E+
Sbjct: 217 MVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPIKLIGVSEK 276
Query: 193 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 252
++ LE F+P+R+A RILG+GDV+S VEKA++V ++D + K+ D D L +
Sbjct: 277 LDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQ 336
Query: 253 TVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVR 312
+ +MGS+S +I M+P ++ E +++ + +I +MT EER P+L+ P R
Sbjct: 337 QMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNR 396
Query: 313 RKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 354
++R+ + SG+ ++++L+ + +M+++ + +++ GS P
Sbjct: 397 KQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 251 bits (640), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 205/335 (61%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PTV+L G+QG GKTT AKLA Y +K+G LV D +RP A QL L E G+
Sbjct: 97 KEKPTVLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++AK+G+E ++K VD++IVD+AGR + +K++++E+K + + P EV
Sbjct: 157 EVFGDPEEKDAIKLAKEGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIKPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQ 250
R++DLEPF P R R+LG+GD+ +EK +E+ QQE EE +K + F+ D Q
Sbjct: 277 RIDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPGMG P VR E+ LK + ++++MT EE E PE++ S
Sbjct: 337 LEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + Q+V +L+ Q QM+ K++
Sbjct: 397 --RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429
>sp|Q89AE4|SRP54_BUCBP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ffh PE=3 SV=1
Length = 450
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 203/337 (60%), Gaps = 5/337 (1%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
+G E L + + P +IL+ GLQG GKTT +AKL ++ K K ++ + D+YR AAI
Sbjct: 86 LGKENHSLNLSVTPPAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL +L +Q + + + P I + ++ AK K DV+++DTAGRLQIDK MM+EL
Sbjct: 146 KQLKMLSKQAKISFFPSNNTQSPKDIVQHAIQHAKLKFYDVLLIDTAGRLQIDKKMMNEL 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
DV + +P E V DAM GQ++ ++ FN + ++ I+TK D D+R G LS+K +
Sbjct: 206 LDVYNISHPIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIILSIKYL 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+ KPIK +G GE++E+LE FYPDR+A RILGMGD+LS +E + + ++ ++ I
Sbjct: 266 TKKPIKFIGTGEKLEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFSNTIKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKIMEAMIEAMTP 297
N F+FND L + ++G ++ ++G +P I + Q E L M+ +I +MT
Sbjct: 326 YNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTIINSMTI 385
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
ER +PEL+ S R++R++ SG +++QL+ Q
Sbjct: 386 SERHQPELIKGS--RKRRISLGSGIPIPEINQLLKQF 420
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 204/335 (60%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PTVIL G+QG GKTT AKLA YL+K+G +V D +RP A QL L + G+
Sbjct: 97 KHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++A++G+E ++K VDV+IVD+AGR + +K +++E++ + + P EV
Sbjct: 157 EVFGDPEEKDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIKPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQ 250
R++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q
Sbjct: 277 RIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P VR E+ LK + ++++MT EE E PE++ S
Sbjct: 337 LEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG T +V +L+ Q QM+ K+L
Sbjct: 397 --RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429
>sp|P57473|SRP54_BUCAI Signal recognition particle protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ffh PE=3 SV=1
Length = 451
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 218/348 (62%), Gaps = 6/348 (1%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRPAAI 59
MG + L F+ P VIL+ GLQG GKTT AKL ++K + K +L + D YR AAI
Sbjct: 86 MGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKLGKWIKNKYKKKILITSTDTYRAAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
+QL IL +Q+ + + + P +I K ++ AK K DV+++DTAGRL IDK MM+E+
Sbjct: 146 EQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAKLKLYDVLLIDTAGRLHIDKKMMNEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
+ ++ + E LL+VD+M GQ+A + FN ++ I+G ILTK DGDSR G ALS++ +
Sbjct: 206 QQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIALSMRYI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE++ LEPF+P+R+A RILGM D++S +E +E + Q +++ KK+
Sbjct: 266 TGKPIKFIGTGEKIISLEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMT 296
+ F+ NDFL Q + + ++G ++ +++ + + + +LK +EAMI +MT
Sbjct: 326 GHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMT 385
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
P+ER KP ++ S R++R+A SG Q V++L+ +R MK +
Sbjct: 386 PKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 219/348 (62%), Gaps = 14/348 (4%)
Query: 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 72
S+ +VILL G+QG GKTT SAKLA Y++K+G L+A D+YRPAA QL L E++ VP
Sbjct: 98 SKKSVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVP 157
Query: 73 VYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
++ T+ K P +I K+G+E+ KK DV+I+DTAGR + ++++++E+K +K + NP E+
Sbjct: 158 LFGDETKTKTPVEIVKEGIEKLKKS--DVLIIDTAGRHKEEESLLEEMKQMKEITNPNEI 215
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGR 189
+LV+D GQ+A F + G+IL TKLDG ++GG ALS V E++ PIK +G
Sbjct: 216 ILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGT 274
Query: 190 GERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLK 249
GE +++LE F P + R+LGMGD+ S +EK ++VM E EE I+ F +
Sbjct: 275 GEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEESIDSILKGKFTLVELYA 333
Query: 250 QTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAE 308
Q T+++MG M +++GMIPG G P + + E+ LK + M+++MT EE+E PEL+
Sbjct: 334 QLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKT 393
Query: 309 SPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
S R +R+A+ +G + ++ L+ + KN G ++ G +P +
Sbjct: 394 S--RLQRIAKGAGVKQDEIKDLL----KYYATTKNAFGNLKRGKMPKM 435
>sp|Q8K9F7|SRP54_BUCAP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ffh PE=3 SV=1
Length = 450
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 208/338 (61%), Gaps = 7/338 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRPAAI 59
MG + +L + P +IL+ GLQGVGKTT KLA ++K++ K +L V+ D+YR AAI
Sbjct: 86 MGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKLAKWIKEKYKKKILTVSTDIYRAAAI 145
Query: 60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL IL +QV + Y + T P I K+ +E AK K D++++DTAGRL I+ MM+E+
Sbjct: 146 KQLQILSDQVKIDFYLSDTTQTPINITKEAIEHAKLKLYDLLLIDTAGRLHINTEMMNEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
++ + P E LL+VD+M GQ+A + F+ + I+G ++TK D D+R G ALS++ +
Sbjct: 206 NTIQNISKPIETLLIVDSMMGQDAINIAKKFSASLSISGIVITKTDSDARSGVALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
+GKPIK +G GE++ LEPF+P+R+A RILGM V+S ++ +E + Q + + KK
Sbjct: 266 TGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLTKKFRK 325
Query: 240 A-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMT 296
+F+ NDFL Q + + MG+++ I KI + E + +L +EA+I +MT
Sbjct: 326 GDDFNLNDFLIQLKEMKNMGNLNYFIEKFSK-NKILSNNPLLGENKNTLNRIEAIIYSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
+ER P ++ S R++R+A SG Q V++L+
Sbjct: 385 HKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLKNF 420
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 203/335 (60%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
+ +PT++L G+QG GKTT AKLA +L+K+G LV D +RP A QL L E +
Sbjct: 97 REKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++A++G+E K K VDV+IVDTAGR + + +++E+K + + P EV
Sbjct: 157 EVFGDPGEKDAIKLAREGVEYFKDKGVDVIIVDTAGRHKEESGLIEEMKQISEAIKPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQ 250
+++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q
Sbjct: 277 KIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P + VR E+ L+ ++++MT EE E P+++ S
Sbjct: 337 LEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + ++V +L+AQ QMR KNL
Sbjct: 397 --RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 222/360 (61%), Gaps = 14/360 (3%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA
Sbjct: 86 LGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQ 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP++ T K P +I K+G+E+ KK VDV+I+DTAGR + ++ ++ E+
Sbjct: 146 QLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VK 177
+++K + NPTE++LV+D GQ+A F + G+IL TKLDG ++GG ALS V
Sbjct: 204 REMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVA 263
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 237
E++ PIK +G GE +++LE F P + RILGMGD+ S +EK +++M E EE I
Sbjct: 264 EINA-PIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEESIDSI 321
Query: 238 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMT 296
+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT
Sbjct: 322 LKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMT 381
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
EE+E PEL+ S R +R+A+ +G ++++ L + KN G ++ G +P +
Sbjct: 382 MEEKENPELIKAS--RLQRIAKGAGVKQEEIK----DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 241 bits (614), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 221/360 (61%), Gaps = 14/360 (3%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G + +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA
Sbjct: 86 LGETIQKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQ 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP++ T K P I K+G+E+ KK VDV+I+DTAGR + ++ ++ E+
Sbjct: 146 QLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VK 177
K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V
Sbjct: 204 KEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGALSAVA 263
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 237
E++ PIK +G GE +++LE F P + RILG GD+ S +EK +++M E AEE I
Sbjct: 264 EINA-PIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEESIDSI 321
Query: 238 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMT 296
+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT
Sbjct: 322 LKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDSMT 381
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
EE+E PEL+ S R +R+A+ +G +++ L+ + KN G ++ G +P +
Sbjct: 382 MEEKENPELIKTS--RLQRIARGAGVKPEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 212/347 (61%), Gaps = 8/347 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G E +L +ILL G+QG GKTT +AKLA L+K+G L+A DVYRPAA
Sbjct: 86 LGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVYRPAAYQ 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ +P++ T+ K P +I ++GL++ KK DV+I+DTAGR + + +++E+
Sbjct: 146 QLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQFKKN--DVIIIDTAGRHKEESGLLEEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
K++K NP E++LV+D GQ+A F + G+IL TK+DG ++GG ALS
Sbjct: 204 KEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
G PIK +G GE+++DLEPF P + R+LGMGD+ S +EK ++++ +D EE +M
Sbjct: 264 EIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEESLDAMM 322
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
F N+ Q +++MGSM +++ MIPGMG P + E LK + ++++MT
Sbjct: 323 RGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTS 382
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
E+E P+++ S R KR+A+ +G ++++ +L+ + +N+
Sbjct: 383 TEKENPDIIKTS--RMKRIAKGAGVKQEEIKELLKYYSTTKNAFQNM 427
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 203/335 (60%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A QL L ++ +
Sbjct: 97 KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++AK+G++ K K VD++IVDTAGR + DKA+++E+K + V++P EV
Sbjct: 157 EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQ 250
+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q
Sbjct: 277 KIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P V E+ LK + ++++MT EE PE++ S
Sbjct: 337 LEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 397 --RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 217/362 (59%), Gaps = 15/362 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+++ V K P VI+L G+QG GKTT + KLA + KK+G LVA DVYRPAA D
Sbjct: 81 FGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYD 140
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QLV +G+Q+ VPVY IAK+G+E+ + D++IVDTAGR + +++E
Sbjct: 141 QLVQIGKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGRHGYGEEVKLLEE 200
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ + P EV+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 201 MKNMYSEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVA 260
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F P R RILGMGD+ S +EK + + + E ++ +++M
Sbjct: 261 ATGAAIKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVM 320
Query: 239 S--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIE 293
S A D KQ + +MG +++++ M+PG G +I Q++ E+ +K ++
Sbjct: 321 SGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMN 380
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKNLMGV 347
+MT +E + P ++ +S +R R+A+ SG + ++V +L+ Q L +M R K L +
Sbjct: 381 SMTYKELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGLAKL 438
Query: 348 ME 349
E
Sbjct: 439 FE 440
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 224/362 (61%), Gaps = 18/362 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA
Sbjct: 86 LGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQ 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP++ T K P +I K+G+E+ KK VDV+I+DTAGR + ++ ++ E+
Sbjct: 146 QLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLKK--VDVIIIDTAGRHKEEEGLLAEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VK 177
K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V
Sbjct: 204 KEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVA 263
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 237
E++ PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I
Sbjct: 264 EINA-PIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSI 321
Query: 238 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAEKSLKIMEAMIEA 294
+ F + Q T+++MG M +++ MIPGMG P AQ+ EA+ LK + M+++
Sbjct: 322 LKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAK--LKRYKIMMDS 379
Query: 295 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 354
MT EE+E PEL+ S R +R+A+ +G ++++ L + KN G ++ G +P
Sbjct: 380 MTMEEKENPELIKTS--RLQRIAKGAGVKQEEIK----DLLKYYSTTKNAFGNLKRGKMP 433
Query: 355 AL 356
+
Sbjct: 434 KM 435
>sp|O07853|SRP54_SULAC Signal recognition particle 54 kDa protein OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=srp54 PE=3 SV=2
Length = 444
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 210/344 (61%), Gaps = 10/344 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V K P +I+L G+QG GKTT S KLA + KK+G LVA D+YRPAA +
Sbjct: 81 FGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAAYE 140
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ +G+Q+ +PVY P +IA GLE+ K+ +++VI+DTAGR + ++++E
Sbjct: 141 QLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMNIVIIDTAGRHGYGEEASLLEE 200
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K + ++P EV+LV+DA GQ+A L + F+ I I++K+DG ++GG ALS
Sbjct: 201 MKSMYDKIHPDEVILVIDASIGQKAYDLASRFHQASPIGSLIVSKMDGTAKGGGALSAVI 260
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F P R R+LG+GD+ S +EK + V E+ E+ + ++
Sbjct: 261 ATGAQIKFIGTGEKLDELEVFNPRRFVSRLLGLGDIESIIEKIKSVEDYENLEKRMEDVI 320
Query: 239 S--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIE 293
S D KQ + +MG + ++ M+PG G ++ Q++ E+ ++ A++
Sbjct: 321 SGKTKLTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPEEQLKLGEEKIRTFMAIMN 380
Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 337
+MT +E + P ++ ++ R +R+A+ +G T ++V +L+ Q +QM
Sbjct: 381 SMTYKELDNPSIIDKA--RMRRIAKGAGVTVEEVKELLKQ-YQM 421
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 220/360 (61%), Gaps = 14/360 (3%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA
Sbjct: 86 LGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQ 145
Query: 61 QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
QL L E++ VP++ T K P I K+G+E+ KK VDV+I+DTAGR + +++++ E+
Sbjct: 146 QLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLKK--VDVIIIDTAGRHKEEESLLAEM 203
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALS-VK 177
K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS V
Sbjct: 204 KEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVA 263
Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 237
E++ PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I
Sbjct: 264 EINA-PIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSI 321
Query: 238 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMT 296
+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT
Sbjct: 322 LKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMT 381
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
EE+E PEL+ S R +R+A+ +G + ++ L + KN G ++ G +P +
Sbjct: 382 LEEKENPELIKTS--RLQRIAKGAGVKQDEIK----DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|Q2NE47|SRP54_METST Signal recognition particle 54 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1
Length = 444
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 199/331 (60%), Gaps = 6/331 (1%)
Query: 3 GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
GE E + +P I++ GLQG GKTT +AKL +LKK+G + +V D +RPAA +QL
Sbjct: 87 GEKPEELKINRKPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVCTDTWRPAAYEQL 146
Query: 63 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
L E + VPV+ +AK+GLE+ K DV++VDTAGR + +K ++DE+ ++
Sbjct: 147 RQLTEPLDVPVFGDPENKDAIDLAKKGLEKCGSK-YDVILVDTAGRHKEEKDLLDEMAEL 205
Query: 123 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALS-VKEVSG 181
+++ P EV+LV+D GQ+A + TF I I++KLDG ++GG ALS V E+
Sbjct: 206 SQIVQPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRA 265
Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241
PIK +G GER++D E F P+R R+LGMGD+ + +EKA EV ++ +EM I+S
Sbjct: 266 -PIKFIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGK 324
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEER 300
F D Q + +MG + +++ +IPG+G PA + E+ L + + ++ +MT E
Sbjct: 325 FTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILMNSMTTYEL 384
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
E PE++ +S R R+++ +G T V L+
Sbjct: 385 ENPEVIKKS--RINRISRGAGLTNDDVKDLL 413
>sp|A4YHL0|SRP54_METS5 Signal recognition particle 54 kDa protein OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1
Length = 446
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 210/354 (59%), Gaps = 15/354 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V KS P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++
Sbjct: 82 FGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKRGYKVALVGADVYRPAALE 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL +G+Q+ VPVY IAK+G+E+ + ++VIVDTAGR + +++E
Sbjct: 142 QLQQIGKQINVPVYGEPGSQDAVGIAKRGVEKFLSERYELVIVDTAGRHGYGEEVKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+KD+ + P EV+LV+DA GQ+A L F+ + I+TK+DG ++GG ALS
Sbjct: 202 MKDIYEKIKPNEVILVIDASLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKK-- 236
+G PIK +G GE++++LE F P R RILGMGD+ + +EK + + ED E +QKK
Sbjct: 262 ATGAPIKFIGVGEKIDELEVFNPRRFVARILGMGDLEAIIEKMKAM---EDYEGIQKKMG 318
Query: 237 -IMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEA 290
+M+ + D KQ V +MG +S+++ +IPG MG I QV+ E+ ++ +
Sbjct: 319 EVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQRWLS 378
Query: 291 MIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
++ +MT +E + P ++ + R +R+A SG ++V +L+ ++ +K L
Sbjct: 379 IMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430
>sp|C3MYM8|SRP54_SULIM Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 16/353 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA D
Sbjct: 82 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYD 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GVPVY +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 142 QLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGRHGYGEETKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ L P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 202 MKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ E++QKK+
Sbjct: 262 ATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGL---EEYEKIQKKME 318
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 319 DVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWL 378
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
A + +MT +E E P ++ +S R +R+A+ SG + V +L+ M +K
Sbjct: 379 AALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429
>sp|C4KGX6|SRP54_SULIK Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1
Length = 447
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 16/353 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA D
Sbjct: 82 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYD 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GVPVY +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 142 QLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGRHGYGEETKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ L P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 202 MKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ E++QKK+
Sbjct: 262 ATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGL---EEYEKIQKKME 318
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 319 DVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWL 378
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
A + +MT +E E P ++ +S R +R+A+ SG + V +L+ M +K
Sbjct: 379 AALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429
>sp|C3N5B0|SRP54_SULIA Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.27) GN=srp54 PE=3 SV=1
Length = 447
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 16/353 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA D
Sbjct: 82 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYD 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GVPVY +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 142 QLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGRHGYGEETKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ L P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 202 MKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ E++QKK+
Sbjct: 262 ATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGL---EEYEKIQKKME 318
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 319 DVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWL 378
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
A + +MT +E E P ++ +S R +R+A+ SG + V +L+ M +K
Sbjct: 379 AALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 199/335 (59%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PT++L+ G+QG GKTT AKLA + +K+G +V D +RP A QL L + +
Sbjct: 97 KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++AK+G+E K K VD++IVDTAGR + +K +++E++ + + P EV
Sbjct: 157 EVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQ 250
+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q
Sbjct: 277 KIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVREA-EKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P +V E+ L+ + ++++MT EE P+++ S
Sbjct: 337 LEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 397 --RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 198/335 (59%), Gaps = 4/335 (1%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +PTV+L G+QG GKTT AKLA Y +K+G +V D +RP A QL L + +
Sbjct: 97 KEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHI 156
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
V+ E ++AK+G+E K ++VD++IVDTAGR + +K +++E++ + + P EV
Sbjct: 157 EVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMRMISEEIRPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQ 250
+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE + + F D Q
Sbjct: 277 KIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAES 309
+ +MG + +++ MIPG+G P + + E+ L+ + ++++MT EE PE++ S
Sbjct: 337 LEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIMDSMTEEELMNPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 397 --RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
>sp|Q9HKT0|SRP54_THEAC Signal recognition particle 54 kDa protein OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=srp54 PE=3 SV=1
Length = 456
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 198/341 (58%), Gaps = 10/341 (2%)
Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
K +P I+L GL G GKTT + KLA + K+G + L+A DV+R AA DQL + +V
Sbjct: 94 KLKPQTIMLVGLYGNGKTTTAGKLARFFAKKGLNSGLIAADVHRYAAYDQLKQIASEVNA 153
Query: 72 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
Y +E P ++ K GLE+ K +V V I+DT+GR +D + DE++ +K + P EV
Sbjct: 154 KFYGDQSEKDPVRLIKHGLEQLK--DVAVKIIDTSGRDSMDAELFDEIRRIKEAVAPDEV 211
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
L+++DA GQ+A FN IG+TG I+TK+DG ++GG ALS PI +G GE
Sbjct: 212 LMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGE 271
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQ 250
M+DLE F P + R+LG+GD+ S E QE + +E+A+E +K+M+ F+ D
Sbjct: 272 HMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDV 331
Query: 251 TRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPEL 305
++ G M +++ IPG KI ++++ AE L++ ++++MT EE E PE+
Sbjct: 332 WEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDSMTFEELENPEI 391
Query: 306 LAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
+ + R R+A+ +G E+ V L+ + M+ MK + G
Sbjct: 392 I--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430
>sp|C3NHT9|SRP54_SULIN Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1
Length = 447
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 202/350 (57%), Gaps = 10/350 (2%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT + KLA + K++G LVA DVYRPAA D
Sbjct: 82 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYD 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GVPVY +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 142 QLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGRHGYGEETKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ L P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 202 MKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + + E ++ + +M
Sbjct: 262 ATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVM 321
Query: 239 --SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMI 292
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++ A +
Sbjct: 322 EGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAAL 381
Query: 293 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
+MT +E E P ++ +S R +R+A+ SG + V +L+ M +K
Sbjct: 382 NSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429
>sp|C3NDW4|SRP54_SULIY Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 204/353 (57%), Gaps = 16/353 (4%)
Query: 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
GG+ V P +I+L G+QG GKTT + KLA + K++G LVA DVYRPAA D
Sbjct: 82 FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYD 141
Query: 61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
QL+ LG Q+GVPVY +IAK+G++ K +D++IVDTAGR + +++E
Sbjct: 142 QLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGRHGYGEETKLLEE 201
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
+K++ L P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS
Sbjct: 202 MKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVA 261
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
+G IK +G GE++++LE F R RILGMGD+ S +EK + + E+ E++QKK+
Sbjct: 262 ATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGL---EEYEKIQKKME 318
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++
Sbjct: 319 DVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWL 378
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
A + +MT +E E P ++ +S R +R+A+ SG + V +L+ M +K
Sbjct: 379 AALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,043,532
Number of Sequences: 539616
Number of extensions: 5962318
Number of successful extensions: 27073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 26374
Number of HSP's gapped (non-prelim): 573
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)