Query 015657
Match_columns 403
No_of_seqs 416 out of 3681
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 1.3E-93 2.7E-98 703.3 39.9 345 1-347 86-431 (451)
2 KOG0780 Signal recognition par 100.0 4.7E-86 1E-90 635.5 33.0 395 2-403 88-483 (483)
3 PRK10867 signal recognition pa 100.0 3.5E-78 7.7E-83 610.5 40.4 341 1-346 86-427 (433)
4 TIGR01425 SRP54_euk signal rec 100.0 3.8E-77 8.3E-82 599.6 36.9 340 1-340 86-429 (429)
5 PRK00771 signal recognition pa 100.0 1.9E-76 4.2E-81 599.1 40.3 351 2-362 83-434 (437)
6 TIGR00959 ffh signal recogniti 100.0 9.3E-76 2E-80 592.7 38.7 341 1-343 85-428 (428)
7 COG0552 FtsY Signal recognitio 100.0 8.4E-37 1.8E-41 293.4 19.9 199 12-210 136-340 (340)
8 PF00448 SRP54: SRP54-type pro 100.0 1.6E-34 3.4E-39 265.4 21.6 196 15-210 1-196 (196)
9 TIGR00064 ftsY signal recognit 100.0 1.5E-32 3.2E-37 264.4 24.1 202 8-209 65-272 (272)
10 PF02978 SRP_SPB: Signal pepti 100.0 6.7E-34 1.5E-38 233.8 11.1 99 241-341 1-104 (104)
11 PRK10416 signal recognition pa 100.0 6.4E-32 1.4E-36 265.0 24.3 205 7-211 106-316 (318)
12 PRK14974 cell division protein 100.0 5.4E-32 1.2E-36 266.5 23.1 199 12-210 137-335 (336)
13 PRK11889 flhF flagellar biosyn 100.0 2E-27 4.3E-32 235.0 22.8 194 13-211 239-435 (436)
14 PRK12726 flagellar biosynthesi 100.0 4.8E-27 1E-31 231.7 23.5 195 13-212 204-401 (407)
15 PRK12723 flagellar biosynthesi 99.9 1.4E-26 3E-31 232.0 22.5 193 13-212 172-371 (388)
16 PRK14723 flhF flagellar biosyn 99.9 1.2E-25 2.7E-30 239.1 22.8 193 14-212 184-382 (767)
17 PRK12724 flagellar biosynthesi 99.9 3E-25 6.5E-30 222.2 21.4 188 14-208 222-414 (432)
18 PRK06731 flhF flagellar biosyn 99.9 2E-24 4.3E-29 207.0 22.7 193 14-211 74-269 (270)
19 cd03115 SRP The signal recogni 99.9 4.4E-24 9.4E-29 192.0 21.4 172 17-188 2-173 (173)
20 PRK05703 flhF flagellar biosyn 99.9 4.2E-24 9E-29 217.5 21.7 191 15-212 221-416 (424)
21 COG1419 FlhF Flagellar GTP-bin 99.9 8.9E-24 1.9E-28 209.0 20.8 192 14-212 202-397 (407)
22 KOG0781 Signal recognition par 99.9 1.4E-24 3.1E-29 215.0 14.4 188 12-199 375-576 (587)
23 PRK06995 flhF flagellar biosyn 99.9 1.4E-23 3E-28 214.9 21.6 192 14-212 255-450 (484)
24 PRK14722 flhF flagellar biosyn 99.9 6.1E-23 1.3E-27 204.4 22.3 193 14-212 136-340 (374)
25 PRK12727 flagellar biosynthesi 99.9 9.1E-22 2E-26 201.5 20.4 190 14-211 349-542 (559)
26 PRK14721 flhF flagellar biosyn 99.9 1.1E-21 2.3E-26 198.2 20.4 192 14-212 190-385 (420)
27 COG1797 CobB Cobyrinic acid a, 99.8 2.8E-19 6E-24 177.4 17.2 293 18-347 3-322 (451)
28 cd02117 NifH_like This family 99.7 5.8E-17 1.3E-21 150.7 14.8 166 16-190 1-209 (212)
29 PRK13232 nifH nitrogenase redu 99.7 9.2E-17 2E-21 155.0 15.0 169 16-192 2-210 (273)
30 cd02037 MRP-like MRP (Multiple 99.7 5E-16 1.1E-20 139.2 18.3 151 18-191 3-166 (169)
31 PRK13235 nifH nitrogenase redu 99.7 2.2E-16 4.9E-21 152.4 16.8 171 16-193 2-213 (274)
32 PRK11670 antiporter inner memb 99.7 7.2E-16 1.6E-20 154.7 18.3 171 15-193 107-316 (369)
33 PRK13233 nifH nitrogenase redu 99.7 4.2E-16 9E-21 150.5 15.6 163 16-184 3-207 (275)
34 PRK13236 nitrogenase reductase 99.7 1E-15 2.3E-20 149.5 18.1 172 13-193 4-217 (296)
35 cd02040 NifH NifH gene encodes 99.7 6.1E-16 1.3E-20 148.4 15.8 168 16-192 2-211 (270)
36 TIGR01969 minD_arch cell divis 99.7 7.9E-16 1.7E-20 145.8 15.8 164 17-191 2-195 (251)
37 CHL00072 chlL photochlorophyll 99.7 9.8E-16 2.1E-20 149.2 16.0 163 18-192 3-205 (290)
38 PRK13234 nifH nitrogenase redu 99.7 6.1E-16 1.3E-20 151.0 14.4 172 14-192 3-214 (295)
39 PRK13230 nitrogenase reductase 99.7 2.3E-15 5E-20 145.7 16.1 170 16-193 2-212 (279)
40 TIGR01007 eps_fam capsular exo 99.7 4.2E-15 9.1E-20 137.2 16.9 153 7-167 9-193 (204)
41 TIGR01287 nifH nitrogenase iro 99.7 3.6E-15 7.8E-20 143.9 16.7 170 16-193 1-211 (275)
42 PRK13185 chlL protochlorophyll 99.6 5E-15 1.1E-19 142.5 17.2 160 15-184 2-201 (270)
43 PHA02518 ParA-like protein; Pr 99.6 9.9E-15 2.1E-19 134.6 17.6 153 17-184 2-164 (211)
44 cd03110 Fer4_NifH_child This p 99.6 1.9E-14 4E-19 130.0 16.8 158 17-190 2-178 (179)
45 cd02032 Bchl_like This family 99.6 1.1E-14 2.4E-19 139.9 16.2 164 17-192 2-205 (267)
46 TIGR01281 DPOR_bchL light-inde 99.6 1.1E-14 2.4E-19 139.9 16.2 158 17-184 2-199 (268)
47 CHL00175 minD septum-site dete 99.6 1.7E-14 3.7E-19 139.6 17.4 170 14-193 14-219 (281)
48 TIGR03371 cellulose_yhjQ cellu 99.6 1.9E-14 4.1E-19 136.1 17.1 161 16-184 2-200 (246)
49 COG3640 CooC CO dehydrogenase 99.6 1.1E-14 2.3E-19 134.4 14.6 167 17-197 2-224 (255)
50 PRK01077 cobyrinic acid a,c-di 99.6 2.9E-14 6.3E-19 147.0 19.1 215 16-251 4-226 (451)
51 TIGR03029 EpsG chain length de 99.6 2.6E-14 5.6E-19 137.9 17.1 143 12-163 100-274 (274)
52 PRK13849 putative crown gall t 99.6 6.6E-14 1.4E-18 132.0 18.8 141 16-166 2-152 (231)
53 PRK13231 nitrogenase reductase 99.6 1.6E-14 3.5E-19 138.5 15.0 202 15-225 2-239 (264)
54 COG2894 MinD Septum formation 99.6 8.8E-15 1.9E-19 133.3 12.2 173 16-198 3-218 (272)
55 COG0489 Mrp ATPases involved i 99.6 3.7E-14 8E-19 136.3 17.0 147 14-167 56-232 (265)
56 TIGR03018 pepcterm_TyrKin exop 99.6 5.4E-14 1.2E-18 130.3 17.5 141 13-162 33-207 (207)
57 PF01656 CbiA: CobQ/CobB/MinD/ 99.6 1.9E-14 4.2E-19 130.7 14.1 143 17-167 1-161 (195)
58 cd02036 MinD Bacterial cell di 99.6 4.4E-14 9.6E-19 126.7 14.3 140 17-184 2-146 (179)
59 cd02033 BchX Chlorophyllide re 99.6 1.6E-14 3.5E-19 142.4 12.0 169 13-195 29-243 (329)
60 PRK13896 cobyrinic acid a,c-di 99.6 1.2E-13 2.6E-18 140.7 18.3 205 17-251 3-216 (433)
61 PRK13869 plasmid-partitioning 99.6 4E-14 8.6E-19 144.0 14.1 162 14-184 120-346 (405)
62 PHA02519 plasmid partition pro 99.6 1.7E-13 3.6E-18 138.4 18.4 162 13-184 104-327 (387)
63 PRK09841 cryptic autophosphory 99.6 1.1E-13 2.3E-18 150.6 18.1 149 11-168 527-707 (726)
64 PRK10818 cell division inhibit 99.6 1.5E-13 3.3E-18 132.1 17.2 167 16-192 3-213 (270)
65 TIGR02016 BchX chlorophyllide 99.6 6.9E-14 1.5E-18 136.6 14.7 168 16-193 1-216 (296)
66 PRK10037 cell division protein 99.5 1.1E-13 2.3E-18 132.0 15.5 139 16-166 2-175 (250)
67 TIGR00379 cobB cobyrinic acid 99.5 2.6E-13 5.7E-18 139.8 19.2 213 18-251 2-223 (449)
68 KOG3022 Predicted ATPase, nucl 99.5 1.2E-13 2.6E-18 129.9 14.7 176 9-192 42-257 (300)
69 PRK11519 tyrosine kinase; Prov 99.5 2E-13 4.3E-18 148.4 18.7 148 12-167 523-701 (719)
70 TIGR01968 minD_bact septum sit 99.5 3.9E-13 8.4E-18 127.9 18.2 166 16-192 2-203 (261)
71 TIGR03453 partition_RepA plasm 99.5 1.6E-13 3.4E-18 139.0 15.9 163 13-184 102-329 (387)
72 COG1192 Soj ATPases involved i 99.5 3.6E-13 7.8E-18 128.7 16.7 158 15-181 2-206 (259)
73 PRK13705 plasmid-partitioning 99.5 1.5E-13 3.3E-18 139.0 14.8 162 13-184 104-327 (388)
74 TIGR01005 eps_transp_fam exopo 99.5 3.8E-13 8.3E-18 147.2 17.3 150 12-169 543-723 (754)
75 TIGR03815 CpaE_hom_Actino heli 99.5 2.2E-12 4.7E-17 127.5 19.2 160 14-184 92-283 (322)
76 COG0455 flhG Antiactivator of 99.5 1.3E-12 2.8E-17 125.1 16.8 168 15-191 2-206 (262)
77 cd00550 ArsA_ATPase Oxyanion-t 99.5 2.8E-12 6.1E-17 122.6 18.3 151 16-167 1-202 (254)
78 PF00142 Fer4_NifH: 4Fe-4S iro 99.5 4.2E-12 9E-17 119.9 18.6 203 16-225 1-246 (273)
79 COG1703 ArgK Putative periplas 99.5 6E-12 1.3E-16 120.1 19.4 145 12-167 48-202 (323)
80 PRK09435 membrane ATPase/prote 99.5 1.7E-11 3.8E-16 121.0 23.4 148 12-170 53-210 (332)
81 cd02035 ArsA ArsA ATPase funct 99.5 1.8E-12 3.9E-17 121.0 15.6 146 17-167 1-183 (217)
82 PF07015 VirC1: VirC1 protein; 99.5 2.3E-12 5E-17 119.9 15.7 90 15-110 2-96 (231)
83 PF06564 YhjQ: YhjQ protein; 99.4 6E-12 1.3E-16 118.6 18.3 143 16-170 2-179 (243)
84 COG1348 NifH Nitrogenase subun 99.4 4.6E-12 9.9E-17 116.5 16.7 202 16-224 2-246 (278)
85 cd02038 FleN-like FleN is a me 99.4 2E-12 4.4E-17 112.3 13.7 107 18-170 3-113 (139)
86 TIGR00750 lao LAO/AO transport 99.4 3.5E-12 7.5E-17 124.9 16.8 149 10-169 29-187 (300)
87 cd03114 ArgK-like The function 99.4 2.8E-12 6E-17 112.8 13.6 137 17-165 1-148 (148)
88 TIGR03499 FlhF flagellar biosy 99.4 7.9E-13 1.7E-17 128.3 11.1 88 14-107 193-282 (282)
89 PF03308 ArgK: ArgK protein; 99.4 9.1E-13 2E-17 124.1 8.4 145 12-167 26-180 (266)
90 PRK06278 cobyrinic acid a,c-di 99.4 1.2E-11 2.6E-16 127.4 17.1 166 13-192 236-418 (476)
91 cd03111 CpaE_like This protein 99.4 8E-12 1.7E-16 103.6 11.7 97 18-163 2-106 (106)
92 cd02042 ParA ParA and ParB of 99.4 9.2E-12 2E-16 102.3 11.6 94 18-162 2-104 (104)
93 PRK00090 bioD dithiobiotin syn 99.3 1E-10 2.2E-15 109.3 16.5 174 18-195 2-204 (222)
94 PF09140 MipZ: ATPase MipZ; I 99.3 7.9E-12 1.7E-16 117.0 7.8 93 17-110 3-111 (261)
95 PRK13768 GTPase; Provisional 99.3 1.1E-10 2.3E-15 111.7 15.4 152 15-169 2-177 (253)
96 PF02374 ArsA_ATPase: Anion-tr 99.2 1.1E-10 2.3E-15 114.6 14.5 42 15-56 1-42 (305)
97 COG1149 MinD superfamily P-loo 99.2 1.4E-10 3E-15 109.4 14.2 96 87-195 154-251 (284)
98 cd01886 EF-G Elongation factor 99.2 8.4E-11 1.8E-15 113.5 12.8 217 18-259 2-241 (270)
99 cd04170 EF-G_bact Elongation f 99.2 8.1E-10 1.8E-14 106.4 18.0 159 95-260 61-240 (268)
100 cd04168 TetM_like Tet(M)-like 99.2 6.6E-10 1.4E-14 105.3 15.5 201 18-259 2-208 (237)
101 COG1159 Era GTPase [General fu 99.2 3.3E-10 7.1E-15 108.4 12.8 190 14-252 5-205 (298)
102 PF13500 AAA_26: AAA domain; P 99.2 9.2E-10 2E-14 101.1 15.3 175 16-197 1-196 (199)
103 TIGR00347 bioD dethiobiotin sy 99.1 2.5E-10 5.4E-15 101.8 10.4 140 20-162 2-166 (166)
104 cd02034 CooC The accessory pro 99.1 2.9E-10 6.2E-15 95.9 10.0 89 18-110 2-99 (116)
105 COG0003 ArsA Predicted ATPase 99.1 2.7E-10 5.8E-15 112.0 9.1 41 15-55 2-42 (322)
106 PRK00784 cobyric acid synthase 99.1 3.6E-09 7.9E-14 110.3 17.6 177 16-198 3-232 (488)
107 TIGR00313 cobQ cobyric acid sy 99.1 5.4E-09 1.2E-13 108.6 18.0 173 18-196 1-227 (475)
108 PF13614 AAA_31: AAA domain; P 99.1 1.4E-09 3E-14 95.5 10.9 115 16-138 1-151 (157)
109 KOG1532 GTPase XAB1, interacts 99.0 1E-09 2.2E-14 103.4 10.0 156 13-170 17-197 (366)
110 COG0132 BioD Dethiobiotin synt 99.0 1.1E-08 2.5E-13 95.3 16.5 176 16-195 3-206 (223)
111 cd03109 DTBS Dethiobiotin synt 99.0 8.5E-09 1.8E-13 89.1 13.7 126 18-190 3-133 (134)
112 PRK12374 putative dithiobiotin 99.0 1.7E-08 3.6E-13 95.3 16.7 174 17-195 4-205 (231)
113 cd04169 RF3 RF3 subfamily. Pe 99.0 3.7E-09 8.1E-14 101.9 11.3 222 15-259 2-238 (267)
114 PRK05632 phosphate acetyltrans 99.0 2.1E-08 4.7E-13 108.6 18.2 173 16-198 3-201 (684)
115 cd01983 Fer4_NifH The Fer4_Nif 99.0 9.1E-09 2E-13 81.9 11.2 69 17-138 1-69 (99)
116 PF02492 cobW: CobW/HypB/UreG, 98.9 1.4E-08 3E-13 92.0 11.4 149 17-170 2-157 (178)
117 TIGR00073 hypB hydrogenase acc 98.9 6.1E-08 1.3E-12 89.8 15.8 141 11-168 18-162 (207)
118 PRK13886 conjugal transfer pro 98.9 4.8E-08 1E-12 92.3 15.0 43 16-58 3-46 (241)
119 COG0378 HypB Ni2+-binding GTPa 98.9 9.3E-09 2E-13 92.9 9.4 146 12-172 9-160 (202)
120 TIGR00484 EF-G translation elo 98.8 1.3E-07 2.8E-12 102.8 18.0 221 12-259 7-252 (689)
121 PF03029 ATP_bind_1: Conserved 98.8 9.4E-09 2E-13 97.4 7.9 36 20-55 1-36 (238)
122 cd03112 CobW_like The function 98.8 1.1E-07 2.4E-12 84.4 13.5 144 17-166 2-158 (158)
123 COG1341 Predicted GTPase or GT 98.8 5.8E-08 1.3E-12 96.7 12.8 125 11-137 69-210 (398)
124 PRK00007 elongation factor G; 98.8 4.3E-07 9.2E-12 98.8 20.1 222 12-258 7-252 (693)
125 COG0529 CysC Adenylylsulfate k 98.8 4.6E-08 9.9E-13 87.1 9.7 48 11-58 19-66 (197)
126 PRK12739 elongation factor G; 98.7 4.5E-07 9.7E-12 98.6 18.6 221 12-259 5-251 (691)
127 COG0480 FusA Translation elong 98.7 1.3E-07 2.9E-12 101.6 14.1 220 12-259 7-251 (697)
128 PRK00089 era GTPase Era; Revie 98.7 1.3E-07 2.8E-12 92.1 12.4 120 14-168 4-127 (292)
129 PF02421 FeoB_N: Ferrous iron 98.7 1.6E-07 3.4E-12 83.2 9.9 135 17-187 2-141 (156)
130 PRK10463 hydrogenase nickel in 98.6 5.9E-07 1.3E-11 87.0 14.3 141 11-168 100-244 (290)
131 PRK00741 prfC peptide chain re 98.6 1.2E-07 2.6E-12 99.6 10.2 159 13-193 8-176 (526)
132 TIGR00436 era GTP-binding prot 98.6 2.7E-07 5.8E-12 89.0 11.4 118 17-169 2-122 (270)
133 PF01583 APS_kinase: Adenylyls 98.6 1.8E-07 4E-12 82.6 8.4 44 14-57 1-44 (156)
134 PRK14493 putative bifunctional 98.6 1.3E-07 2.8E-12 91.4 7.5 91 16-111 2-101 (274)
135 COG4108 PrfC Peptide chain rel 98.6 8.2E-07 1.8E-11 88.8 13.2 158 13-195 10-180 (528)
136 PRK13351 elongation factor G; 98.6 4.2E-06 9.1E-11 91.1 19.8 215 13-258 6-250 (687)
137 cd04163 Era Era subfamily. Er 98.5 2.5E-06 5.3E-11 74.0 13.7 119 15-168 3-125 (168)
138 TIGR00101 ureG urease accessor 98.5 6.2E-06 1.3E-10 76.1 16.6 140 15-168 1-151 (199)
139 PRK11537 putative GTP-binding 98.5 2.4E-06 5.2E-11 84.4 14.2 162 14-181 3-177 (318)
140 smart00053 DYNc Dynamin, GTPas 98.5 1.7E-06 3.8E-11 81.9 12.6 81 98-178 125-216 (240)
141 TIGR00503 prfC peptide chain r 98.5 1.2E-06 2.6E-11 92.2 12.4 150 13-183 9-163 (527)
142 PRK15494 era GTPase Era; Provi 98.5 2.6E-06 5.7E-11 84.9 13.8 118 16-168 53-174 (339)
143 cd01884 EF_Tu EF-Tu subfamily. 98.4 3.5E-06 7.6E-11 77.5 12.9 123 17-167 4-131 (195)
144 PRK12740 elongation factor G; 98.4 3E-06 6.5E-11 92.0 13.1 207 21-258 1-234 (668)
145 smart00382 AAA ATPases associa 98.4 5.9E-06 1.3E-10 69.1 11.8 91 15-111 2-92 (148)
146 PRK00889 adenylylsulfate kinas 98.4 3.2E-06 7E-11 75.9 10.4 43 13-55 2-44 (175)
147 KOG2825 Putative arsenite-tran 98.3 1.8E-06 3.8E-11 80.8 8.6 44 12-55 16-59 (323)
148 COG1066 Sms Predicted ATP-depe 98.3 3.7E-06 8E-11 84.0 11.4 115 14-136 92-218 (456)
149 COG1618 Predicted nucleotide k 98.3 1E-05 2.3E-10 71.2 12.6 35 15-49 5-39 (179)
150 PF00009 GTP_EFTU: Elongation 98.3 8.3E-07 1.8E-11 80.7 6.0 131 14-167 2-135 (188)
151 TIGR02237 recomb_radB DNA repa 98.3 4.5E-06 9.8E-11 77.0 11.0 96 14-109 11-109 (209)
152 cd01120 RecA-like_NTPases RecA 98.3 9.7E-06 2.1E-10 70.5 12.5 93 17-109 1-97 (165)
153 cd01891 TypA_BipA TypA (tyrosi 98.3 2.1E-05 4.7E-10 71.6 15.1 65 96-167 63-130 (194)
154 COG1160 Predicted GTPases [Gen 98.3 7.9E-06 1.7E-10 82.7 13.1 117 16-167 4-125 (444)
155 COG1492 CobQ Cobyric acid synt 98.3 1.7E-06 3.7E-11 88.3 8.0 168 17-195 3-229 (486)
156 cd00881 GTP_translation_factor 98.3 1.2E-05 2.6E-10 71.8 12.3 125 18-168 2-128 (189)
157 TIGR03878 thermo_KaiC_2 KaiC d 98.3 7E-06 1.5E-10 78.8 11.3 40 14-53 35-74 (259)
158 cd01124 KaiC KaiC is a circadi 98.3 7.1E-06 1.5E-10 74.0 10.7 41 17-57 1-41 (187)
159 cd01394 radB RadB. The archaea 98.3 6.7E-06 1.4E-10 76.5 10.8 43 14-56 18-60 (218)
160 PRK09361 radB DNA repair and r 98.3 7.3E-06 1.6E-10 76.7 10.8 45 14-58 22-66 (225)
161 TIGR02012 tigrfam_recA protein 98.2 7.8E-06 1.7E-10 80.6 11.1 90 14-110 54-146 (321)
162 PRK09554 feoB ferrous iron tra 98.2 4.1E-05 8.9E-10 84.0 17.4 136 16-187 4-148 (772)
163 COG4963 CpaE Flp pilus assembl 98.2 6.1E-05 1.3E-09 74.8 16.9 161 14-184 103-300 (366)
164 PRK06067 flagellar accessory p 98.2 2.2E-05 4.9E-10 73.9 12.7 96 14-109 24-132 (234)
165 TIGR00176 mobB molybdopterin-g 98.2 3.9E-06 8.4E-11 74.4 6.9 38 17-54 1-38 (155)
166 COG0523 Putative GTPases (G3E 98.2 1.4E-05 3.1E-10 78.9 11.3 160 16-183 2-176 (323)
167 PRK12736 elongation factor Tu; 98.2 5.8E-05 1.3E-09 76.9 16.0 129 13-167 10-141 (394)
168 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 8.8E-05 1.9E-09 67.8 15.8 118 17-168 2-130 (196)
169 cd00983 recA RecA is a bacter 98.1 1.4E-05 3E-10 78.9 10.7 88 15-109 55-145 (325)
170 cd01894 EngA1 EngA1 subfamily. 98.1 5.6E-05 1.2E-09 65.3 13.3 117 19-170 1-121 (157)
171 KOG1533 Predicted GTPase [Gene 98.1 3.5E-06 7.5E-11 78.3 5.8 38 18-55 5-42 (290)
172 PRK04296 thymidine kinase; Pro 98.1 1.5E-05 3.3E-10 72.9 10.0 87 16-110 3-91 (190)
173 PRK08533 flagellar accessory p 98.1 3.7E-05 8E-10 72.5 12.8 97 14-110 23-130 (230)
174 PRK10751 molybdopterin-guanine 98.1 9.1E-06 2E-10 73.2 8.1 41 12-52 3-43 (173)
175 PLN03127 Elongation factor Tu; 98.1 5.3E-05 1.2E-09 78.3 14.5 128 13-168 59-191 (447)
176 KOG0635 Adenosine 5'-phosphosu 98.1 1.4E-05 3E-10 69.5 8.4 50 9-58 25-74 (207)
177 cd04167 Snu114p Snu114p subfam 98.1 2.2E-05 4.7E-10 72.9 10.4 65 96-167 69-136 (213)
178 cd01122 GP4d_helicase GP4d_hel 98.1 4.6E-05 9.9E-10 73.2 12.9 147 14-166 29-192 (271)
179 PLN00116 translation elongatio 98.1 3.7E-05 8E-10 85.4 13.8 137 12-167 16-163 (843)
180 PLN02974 adenosylmethionine-8- 98.1 8.1E-05 1.8E-09 82.0 16.0 90 97-191 184-278 (817)
181 PRK00049 elongation factor Tu; 98.1 4.1E-05 8.8E-10 78.0 12.3 127 14-168 11-142 (396)
182 cd01885 EF2 EF2 (for archaea a 98.1 5.6E-05 1.2E-09 70.9 12.3 65 96-167 71-138 (222)
183 PRK09354 recA recombinase A; P 98.0 3.2E-05 6.9E-10 77.0 11.0 89 15-110 60-151 (349)
184 TIGR01394 TypA_BipA GTP-bindin 98.0 3E-05 6.5E-10 82.8 11.5 121 16-167 2-129 (594)
185 cd00984 DnaB_C DnaB helicase C 98.0 0.00012 2.6E-09 69.0 14.4 42 14-55 12-54 (242)
186 cd04166 CysN_ATPS CysN_ATPS su 98.0 2.5E-05 5.4E-10 72.3 9.3 68 95-168 74-144 (208)
187 cd01121 Sms Sms (bacterial rad 98.0 3.6E-05 7.9E-10 77.6 11.0 86 15-109 82-170 (372)
188 TIGR02655 circ_KaiC circadian 98.0 2.6E-05 5.6E-10 81.5 10.2 92 14-109 262-365 (484)
189 cd01883 EF1_alpha Eukaryotic e 98.0 1.7E-05 3.6E-10 74.1 8.0 23 18-40 2-24 (219)
190 cd01895 EngA2 EngA2 subfamily. 98.0 0.00034 7.4E-09 61.1 16.0 74 96-169 48-128 (174)
191 PRK05973 replicative DNA helic 98.0 5.8E-05 1.3E-09 71.4 11.6 45 14-58 63-107 (237)
192 CHL00071 tufA elongation facto 98.0 7.2E-05 1.6E-09 76.5 13.1 130 13-168 10-142 (409)
193 PF01926 MMR_HSR1: 50S ribosom 98.0 7.4E-05 1.6E-09 62.2 10.9 110 18-163 2-116 (116)
194 PRK12735 elongation factor Tu; 98.0 7.9E-05 1.7E-09 75.9 13.3 131 10-168 6-142 (396)
195 TIGR00490 aEF-2 translation el 98.0 1.8E-05 4E-10 86.5 9.2 128 13-167 17-151 (720)
196 TIGR02475 CobW cobalamin biosy 98.0 7.5E-05 1.6E-09 74.6 12.7 121 15-139 4-135 (341)
197 KOG0462 Elongation factor-type 98.0 2.7E-05 5.8E-10 80.1 9.4 147 13-184 58-209 (650)
198 PHA02542 41 41 helicase; Provi 98.0 0.00012 2.5E-09 76.2 14.4 42 15-56 190-231 (473)
199 TIGR03877 thermo_KaiC_1 KaiC d 98.0 0.00014 3E-09 68.9 13.7 41 14-54 20-60 (237)
200 cd01890 LepA LepA subfamily. 98.0 0.00017 3.6E-09 64.3 13.5 81 96-183 65-150 (179)
201 TIGR03574 selen_PSTK L-seryl-t 98.0 5.4E-05 1.2E-09 72.1 10.9 39 17-55 1-39 (249)
202 PRK14494 putative molybdopteri 98.0 9.9E-06 2.2E-10 76.2 5.7 37 15-51 1-37 (229)
203 cd01887 IF2_eIF5B IF2/eIF5B (i 98.0 5.2E-05 1.1E-09 66.5 10.0 66 96-167 48-115 (168)
204 PF08433 KTI12: Chromatin asso 98.0 3.8E-05 8.2E-10 74.2 9.8 107 16-138 2-108 (270)
205 PRK15453 phosphoribulokinase; 98.0 5.4E-05 1.2E-09 73.0 10.6 44 13-56 3-46 (290)
206 PRK09866 hypothetical protein; 98.0 0.00015 3.2E-09 76.8 14.5 69 97-167 229-302 (741)
207 cd01879 FeoB Ferrous iron tran 98.0 7E-05 1.5E-09 64.9 10.4 91 97-187 42-137 (158)
208 cd04171 SelB SelB subfamily. 98.0 0.00016 3.5E-09 62.9 12.7 67 97-169 50-119 (164)
209 PRK10218 GTP-binding protein; 98.0 0.0001 2.2E-09 78.8 13.6 123 14-167 4-133 (607)
210 PRK05541 adenylylsulfate kinas 98.0 6.5E-05 1.4E-09 67.4 10.4 40 13-52 5-44 (176)
211 cd03116 MobB Molybdenum is an 98.0 4.2E-05 9E-10 68.1 8.9 40 15-54 1-40 (159)
212 PRK12298 obgE GTPase CgtA; Rev 98.0 4E-05 8.6E-10 77.9 9.8 116 17-169 161-290 (390)
213 PRK06526 transposase; Provisio 97.9 3.9E-05 8.4E-10 73.5 9.1 81 15-116 98-178 (254)
214 cd04165 GTPBP1_like GTPBP1-lik 97.9 4.9E-05 1.1E-09 71.4 9.4 141 18-168 2-152 (224)
215 PRK11823 DNA repair protein Ra 97.9 5.7E-05 1.2E-09 78.1 10.5 86 15-109 80-168 (446)
216 PRK00411 cdc6 cell division co 97.9 0.0044 9.6E-08 62.7 24.2 95 13-110 53-151 (394)
217 PRK05433 GTP-binding protein L 97.9 8.1E-05 1.8E-09 79.7 11.9 145 13-183 5-157 (600)
218 PF13481 AAA_25: AAA domain; P 97.9 0.0001 2.2E-09 66.8 11.0 41 15-55 32-82 (193)
219 PLN00043 elongation factor 1-a 97.9 3.2E-05 7E-10 79.9 8.5 28 13-40 5-32 (447)
220 KOG0465 Mitochondrial elongati 97.9 5.8E-05 1.3E-09 78.4 10.2 229 13-271 37-311 (721)
221 PRK08233 hypothetical protein; 97.9 3.7E-05 8.1E-10 68.9 7.9 37 14-52 2-38 (182)
222 TIGR03594 GTPase_EngA ribosome 97.9 0.00018 3.9E-09 73.7 14.0 117 18-169 2-122 (429)
223 PTZ00141 elongation factor 1- 97.9 2.7E-05 5.8E-10 80.5 7.9 27 14-40 6-32 (446)
224 TIGR00485 EF-Tu translation el 97.9 0.00014 3E-09 74.0 12.9 128 13-168 10-142 (394)
225 COG0468 RecA RecA/RadA recombi 97.9 0.00024 5.2E-09 68.7 13.5 95 14-110 59-154 (279)
226 PF13401 AAA_22: AAA domain; P 97.9 7.4E-05 1.6E-09 63.1 8.8 105 14-124 3-113 (131)
227 PRK04328 hypothetical protein; 97.9 0.00028 6.1E-09 67.3 13.6 41 14-54 22-62 (249)
228 cd01878 HflX HflX subfamily. 97.9 0.00033 7.1E-09 64.1 13.4 73 97-169 88-168 (204)
229 KOG2749 mRNA cleavage and poly 97.8 0.00036 7.7E-09 68.6 13.9 44 12-56 101-144 (415)
230 PRK00093 GTP-binding protein D 97.8 0.00025 5.4E-09 72.9 13.8 117 17-168 3-123 (435)
231 PF06745 KaiC: KaiC; InterPro 97.8 6.1E-05 1.3E-09 70.4 8.4 41 14-54 18-59 (226)
232 TIGR02034 CysN sulfate adenyly 97.8 0.0001 2.2E-09 75.4 10.6 66 95-168 77-147 (406)
233 PTZ00416 elongation factor 2; 97.8 2.7E-05 5.9E-10 86.4 6.8 137 13-167 17-157 (836)
234 PRK00093 GTP-binding protein D 97.8 0.00093 2E-08 68.7 17.8 119 14-167 172-297 (435)
235 PRK05124 cysN sulfate adenylyl 97.8 5.6E-05 1.2E-09 78.8 8.8 27 13-39 25-51 (474)
236 PLN03126 Elongation factor Tu; 97.8 0.00021 4.6E-09 74.5 13.0 128 13-168 79-211 (478)
237 PF10662 PduV-EutP: Ethanolami 97.8 8.3E-05 1.8E-09 64.7 8.4 77 101-182 39-120 (143)
238 cd01889 SelB_euk SelB subfamil 97.8 0.00021 4.6E-09 64.9 11.6 65 96-167 66-133 (192)
239 COG1763 MobB Molybdopterin-gua 97.8 4.8E-05 1E-09 67.6 7.0 40 15-54 2-41 (161)
240 cd00880 Era_like Era (E. coli 97.8 5.8E-05 1.3E-09 64.3 7.4 72 97-170 44-120 (163)
241 PRK06762 hypothetical protein; 97.8 9.3E-05 2E-09 65.7 8.9 37 15-54 2-38 (166)
242 TIGR00416 sms DNA repair prote 97.8 0.0001 2.2E-09 76.4 10.4 87 14-109 93-182 (454)
243 PRK06696 uridine kinase; Valid 97.8 3E-05 6.5E-10 72.6 5.9 45 11-55 18-62 (223)
244 cd04164 trmE TrmE (MnmE, ThdF, 97.8 0.00032 6.8E-09 60.4 11.9 116 17-169 3-122 (157)
245 cd04160 Arfrp1 Arfrp1 subfamil 97.8 9.1E-05 2E-09 65.1 8.6 66 96-168 48-121 (167)
246 cd01882 BMS1 Bms1. Bms1 is an 97.8 0.0004 8.8E-09 65.2 13.4 107 12-167 36-146 (225)
247 cd01888 eIF2_gamma eIF2-gamma 97.8 0.00014 3E-09 67.0 10.0 65 98-168 83-151 (203)
248 PRK14495 putative molybdopteri 97.8 3.4E-05 7.5E-10 78.4 6.4 37 16-52 2-38 (452)
249 PRK12317 elongation factor 1-a 97.8 0.00022 4.7E-09 73.3 12.4 27 13-39 4-30 (425)
250 TIGR03598 GTPase_YsxC ribosome 97.8 0.00048 1E-08 61.9 13.2 24 13-36 16-39 (179)
251 cd01898 Obg Obg subfamily. Th 97.8 0.00029 6.3E-09 61.9 11.6 70 98-169 48-129 (170)
252 PRK07667 uridine kinase; Provi 97.8 4.4E-05 9.5E-10 70.0 6.4 42 13-54 15-56 (193)
253 TIGR01393 lepA GTP-binding pro 97.8 0.00034 7.3E-09 74.9 14.0 147 14-183 2-153 (595)
254 PRK08727 hypothetical protein; 97.8 0.0014 3E-08 61.9 16.8 37 16-52 42-78 (233)
255 TIGR03880 KaiC_arch_3 KaiC dom 97.8 0.00022 4.8E-09 66.6 10.9 40 14-53 15-54 (224)
256 cd01853 Toc34_like Toc34-like 97.8 0.00027 5.8E-09 67.5 11.5 24 13-36 29-52 (249)
257 PRK14489 putative bifunctional 97.8 5.8E-05 1.3E-09 76.1 7.3 41 14-54 204-244 (366)
258 KOG1423 Ras-like GTPase ERA [C 97.8 0.00011 2.4E-09 70.9 8.7 124 15-176 72-207 (379)
259 TIGR00455 apsK adenylylsulfate 97.8 0.00025 5.3E-09 64.2 10.7 44 12-55 15-58 (184)
260 COG1217 TypA Predicted membran 97.8 0.00038 8.3E-09 70.6 12.8 153 14-195 4-173 (603)
261 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00043 9.3E-09 64.8 12.5 40 14-53 19-58 (229)
262 PRK09270 nucleoside triphospha 97.7 0.0008 1.7E-08 63.2 14.3 44 12-55 30-74 (229)
263 PF00154 RecA: recA bacterial 97.7 9.6E-05 2.1E-09 72.8 8.1 136 15-165 53-190 (322)
264 PRK12296 obgE GTPase CgtA; Rev 97.7 0.00049 1.1E-08 71.7 13.6 24 13-36 157-180 (500)
265 TIGR03594 GTPase_EngA ribosome 97.7 0.0023 5E-08 65.6 18.6 118 15-167 172-296 (429)
266 PRK15467 ethanolamine utilizat 97.7 0.00024 5.2E-09 62.8 9.8 83 102-187 41-127 (158)
267 COG1160 Predicted GTPases [Gen 97.7 0.00088 1.9E-08 68.1 14.7 191 14-260 177-375 (444)
268 cd01125 repA Hexameric Replica 97.7 0.00027 5.9E-09 66.8 10.6 92 16-107 2-121 (239)
269 cd02027 APSK Adenosine 5'-phos 97.7 0.00022 4.7E-09 62.6 9.2 40 17-56 1-40 (149)
270 PRK07560 elongation factor EF- 97.7 0.00016 3.5E-09 79.3 10.2 128 13-167 18-152 (731)
271 PF06414 Zeta_toxin: Zeta toxi 97.7 0.00015 3.3E-09 66.6 8.4 92 11-109 11-104 (199)
272 cd01393 recA_like RecA is a b 97.7 0.00023 5E-09 66.3 9.8 40 14-53 18-63 (226)
273 PRK07003 DNA polymerase III su 97.7 0.004 8.7E-08 67.5 20.1 90 14-110 37-132 (830)
274 cd01897 NOG NOG1 is a nucleola 97.7 0.00082 1.8E-08 59.0 12.7 20 17-36 2-21 (168)
275 cd04139 RalA_RalB RalA/RalB su 97.7 0.00042 9.1E-09 60.3 10.7 83 97-185 47-140 (164)
276 KOG0464 Elongation factor G [T 97.7 7.1E-05 1.5E-09 74.5 6.2 145 14-182 36-184 (753)
277 COG4240 Predicted kinase [Gene 97.7 0.00019 4.1E-09 66.7 8.4 44 11-54 46-90 (300)
278 cd00154 Rab Rab family. Rab G 97.7 0.00028 6E-09 60.5 9.2 66 96-167 47-118 (159)
279 PRK12297 obgE GTPase CgtA; Rev 97.7 0.00074 1.6E-08 69.3 13.7 134 16-186 159-306 (424)
280 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00093 2E-08 62.1 13.3 40 13-52 36-75 (226)
281 PRK07952 DNA replication prote 97.7 0.00035 7.7E-09 66.5 10.5 77 16-111 100-176 (244)
282 cd02029 PRK_like Phosphoribulo 97.7 0.00017 3.6E-09 69.2 8.2 40 17-56 1-40 (277)
283 KOG1534 Putative transcription 97.6 0.0004 8.6E-09 63.8 10.1 39 17-55 5-43 (273)
284 COG1084 Predicted GTPase [Gene 97.6 0.00027 5.8E-09 69.0 9.6 115 15-167 168-293 (346)
285 KOG2743 Cobalamin synthesis pr 97.6 0.0011 2.3E-08 64.0 13.4 151 14-169 56-226 (391)
286 PRK12402 replication factor C 97.6 0.0022 4.8E-08 63.2 16.5 35 17-51 38-74 (337)
287 PRK03003 GTP-binding protein D 97.6 0.00045 9.8E-09 72.0 12.0 120 14-168 37-160 (472)
288 PHA00729 NTP-binding motif con 97.6 0.0002 4.2E-09 67.2 8.3 28 13-40 15-42 (226)
289 PRK06893 DNA replication initi 97.6 0.0013 2.9E-08 61.8 14.1 37 16-52 40-76 (229)
290 COG0467 RAD55 RecA-superfamily 97.6 0.0012 2.6E-08 63.2 14.0 49 14-62 22-70 (260)
291 smart00178 SAR Sar1p-like memb 97.6 0.00038 8.2E-09 62.9 10.0 66 96-167 59-131 (184)
292 PRK14491 putative bifunctional 97.6 9.4E-05 2E-09 79.1 6.8 40 14-53 9-48 (597)
293 PRK03846 adenylylsulfate kinas 97.6 7.7E-05 1.7E-09 68.5 5.4 44 12-55 21-64 (198)
294 TIGR00345 arsA arsenite-activa 97.6 0.0019 4.2E-08 62.8 15.2 25 31-55 1-25 (284)
295 cd04156 ARLTS1 ARLTS1 subfamil 97.6 0.00056 1.2E-08 59.6 10.3 65 97-167 43-114 (160)
296 PF13671 AAA_33: AAA domain; P 97.6 0.00018 3.8E-09 61.9 6.9 31 17-52 1-31 (143)
297 TIGR01618 phage_P_loop phage n 97.6 0.0002 4.3E-09 67.1 7.7 80 15-109 12-93 (220)
298 PRK05506 bifunctional sulfate 97.6 0.00011 2.4E-09 79.4 6.7 65 95-167 101-170 (632)
299 smart00175 RAB Rab subfamily o 97.6 0.00041 8.9E-09 60.4 9.2 82 97-184 48-139 (164)
300 PF13479 AAA_24: AAA domain 97.6 0.00016 3.5E-09 67.3 6.8 77 14-109 2-80 (213)
301 cd02028 UMPK_like Uridine mono 97.6 8.5E-05 1.8E-09 67.3 4.8 39 17-55 1-39 (179)
302 PF03205 MobB: Molybdopterin g 97.6 0.00013 2.7E-09 63.6 5.5 37 17-53 2-39 (140)
303 PF03796 DnaB_C: DnaB-like hel 97.6 0.0012 2.7E-08 63.0 12.9 117 14-137 18-138 (259)
304 COG0370 FeoB Fe2+ transport sy 97.6 0.00029 6.3E-09 74.7 9.1 135 16-187 4-144 (653)
305 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00059 1.3E-08 60.0 9.8 82 97-184 50-141 (166)
306 cd04155 Arl3 Arl3 subfamily. 97.5 0.0011 2.3E-08 58.6 11.5 22 15-36 14-35 (173)
307 PRK08760 replicative DNA helic 97.5 0.0015 3.3E-08 68.2 14.1 145 14-166 228-390 (476)
308 cd04161 Arl2l1_Arl13_like Arl2 97.5 0.00062 1.3E-08 60.4 9.8 67 96-168 41-114 (167)
309 TIGR00665 DnaB replicative DNA 97.5 0.0022 4.7E-08 66.1 15.2 145 14-166 194-356 (434)
310 PF13207 AAA_17: AAA domain; P 97.5 0.00011 2.4E-09 61.4 4.6 31 17-52 1-31 (121)
311 PRK05480 uridine/cytidine kina 97.5 0.00016 3.4E-09 66.9 6.1 41 13-55 4-44 (209)
312 PRK07764 DNA polymerase III su 97.5 0.012 2.5E-07 65.3 21.5 94 13-111 35-134 (824)
313 TIGR00991 3a0901s02IAP34 GTP-b 97.5 0.00073 1.6E-08 66.2 10.9 120 13-167 36-166 (313)
314 TIGR03575 selen_PSTK_euk L-ser 97.5 0.0013 2.9E-08 65.4 13.0 39 17-55 1-40 (340)
315 PLN03046 D-glycerate 3-kinase; 97.5 0.00065 1.4E-08 69.0 10.7 43 13-55 210-252 (460)
316 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00037 7.9E-09 65.4 8.5 40 14-53 18-63 (235)
317 TIGR00231 small_GTP small GTP- 97.5 0.0013 2.8E-08 55.8 11.2 20 17-36 3-22 (161)
318 PLN02796 D-glycerate 3-kinase 97.5 0.00063 1.4E-08 67.6 10.3 43 13-55 98-140 (347)
319 cd04154 Arl2 Arl2 subfamily. 97.5 0.00071 1.5E-08 60.1 9.9 66 97-168 57-129 (173)
320 PF00350 Dynamin_N: Dynamin fa 97.5 0.00029 6.3E-09 62.2 7.2 66 97-164 100-168 (168)
321 cd04145 M_R_Ras_like M-Ras/R-R 97.5 0.0014 3E-08 57.2 11.5 82 97-184 49-141 (164)
322 cd00009 AAA The AAA+ (ATPases 97.5 0.00058 1.3E-08 57.5 8.8 42 14-55 18-59 (151)
323 cd04137 RheB Rheb (Ras Homolog 97.5 0.0009 2E-08 59.7 10.5 21 16-36 2-22 (180)
324 TIGR03600 phage_DnaB phage rep 97.5 0.0021 4.5E-08 66.0 14.4 90 14-107 193-286 (421)
325 cd00876 Ras Ras family. The R 97.5 0.00066 1.4E-08 58.7 9.3 82 97-184 46-138 (160)
326 PLN03118 Rab family protein; P 97.5 0.0018 3.8E-08 59.8 12.6 65 97-167 61-133 (211)
327 PRK12422 chromosomal replicati 97.5 0.0024 5.3E-08 66.0 14.9 37 16-52 142-178 (445)
328 COG2019 AdkA Archaeal adenylat 97.5 0.00036 7.9E-09 61.9 7.3 25 15-39 4-28 (189)
329 COG0050 TufB GTPases - transla 97.5 0.0016 3.5E-08 62.7 12.1 149 9-183 5-164 (394)
330 PRK00149 dnaA chromosomal repl 97.5 0.006 1.3E-07 63.2 17.7 38 16-53 149-188 (450)
331 PF13245 AAA_19: Part of AAA d 97.5 0.00021 4.6E-09 55.5 5.1 39 14-52 9-51 (76)
332 PRK14950 DNA polymerase III su 97.5 0.025 5.4E-07 60.7 22.6 93 13-110 36-133 (585)
333 PRK09165 replicative DNA helic 97.5 0.0018 3.9E-08 68.0 13.6 145 14-166 216-394 (497)
334 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.5 0.00087 1.9E-08 59.8 9.8 67 96-168 57-130 (174)
335 cd01864 Rab19 Rab19 subfamily. 97.5 0.00081 1.8E-08 59.1 9.5 65 97-167 51-121 (165)
336 PRK03003 GTP-binding protein D 97.5 0.0013 2.9E-08 68.5 12.5 120 14-168 210-336 (472)
337 TIGR02928 orc1/cdc6 family rep 97.5 0.043 9.4E-07 54.8 23.0 95 12-109 37-141 (365)
338 PHA02530 pseT polynucleotide k 97.4 0.0012 2.6E-08 64.3 11.4 36 15-54 2-37 (300)
339 TIGR00708 cobA cob(I)alamin ad 97.4 0.0014 3E-08 59.0 10.8 89 14-107 5-107 (173)
340 cd00878 Arf_Arl Arf (ADP-ribos 97.4 0.00078 1.7E-08 58.6 9.1 67 97-169 42-115 (158)
341 PRK14088 dnaA chromosomal repl 97.4 0.0086 1.9E-07 61.9 18.1 37 16-52 131-169 (440)
342 PRK08084 DNA replication initi 97.4 0.005 1.1E-07 58.2 15.1 37 16-52 46-82 (235)
343 smart00173 RAS Ras subfamily o 97.4 0.0017 3.8E-08 56.7 11.2 19 18-36 3-21 (164)
344 PRK09518 bifunctional cytidyla 97.4 0.00077 1.7E-08 73.8 10.7 119 15-168 450-575 (712)
345 TIGR02655 circ_KaiC circadian 97.4 0.0014 3E-08 68.6 12.1 89 14-106 20-129 (484)
346 PRK09302 circadian clock prote 97.4 0.001 2.2E-08 70.1 11.1 39 15-53 273-311 (509)
347 PRK05595 replicative DNA helic 97.4 0.0027 5.9E-08 65.7 14.2 145 14-166 200-362 (444)
348 PRK11058 GTPase HflX; Provisio 97.4 0.0014 3E-08 67.5 11.8 117 17-168 199-323 (426)
349 TIGR00362 DnaA chromosomal rep 97.4 0.0062 1.3E-07 62.2 16.6 37 16-52 137-175 (405)
350 PRK08691 DNA polymerase III su 97.4 0.034 7.3E-07 60.2 22.4 91 13-110 36-132 (709)
351 COG2403 Predicted GTPase [Gene 97.4 0.0014 3.1E-08 64.8 11.1 131 17-170 128-284 (449)
352 PRK05439 pantothenate kinase; 97.4 0.00028 6.1E-09 69.4 6.3 44 12-55 83-128 (311)
353 PF00485 PRK: Phosphoribulokin 97.4 0.00019 4E-09 65.7 4.8 39 17-55 1-43 (194)
354 PF04548 AIG1: AIG1 family; I 97.4 0.00041 8.9E-09 64.5 7.1 117 17-167 2-129 (212)
355 PF01695 IstB_IS21: IstB-like 97.4 0.00047 1E-08 62.5 7.2 77 15-112 47-123 (178)
356 PRK06835 DNA replication prote 97.4 0.00066 1.4E-08 67.4 8.9 88 16-122 184-271 (329)
357 TIGR02729 Obg_CgtA Obg family 97.4 0.0021 4.6E-08 63.9 12.5 21 16-36 158-178 (329)
358 PRK14953 DNA polymerase III su 97.4 0.095 2.1E-06 54.9 25.2 28 13-40 36-63 (486)
359 PRK06645 DNA polymerase III su 97.4 0.038 8.2E-07 58.1 22.2 93 13-110 41-141 (507)
360 TIGR03156 GTP_HflX GTP-binding 97.4 0.0018 3.9E-08 65.0 11.9 118 16-168 190-315 (351)
361 PRK06761 hypothetical protein; 97.4 0.0045 9.7E-08 60.1 14.2 42 15-56 3-45 (282)
362 PRK08181 transposase; Validate 97.4 0.0019 4.1E-08 62.4 11.6 79 15-114 106-184 (269)
363 PRK14960 DNA polymerase III su 97.4 0.029 6.4E-07 60.3 21.4 91 13-110 35-131 (702)
364 PRK14086 dnaA chromosomal repl 97.4 0.0074 1.6E-07 64.3 16.9 37 16-52 315-353 (617)
365 PRK08506 replicative DNA helic 97.4 0.003 6.4E-08 65.9 13.7 146 14-166 191-353 (472)
366 PRK09302 circadian clock prote 97.4 0.0019 4.2E-08 67.9 12.5 95 14-108 30-141 (509)
367 PRK14970 DNA polymerase III su 97.4 0.029 6.2E-07 56.4 20.5 31 13-43 37-67 (367)
368 cd04124 RabL2 RabL2 subfamily. 97.4 0.0018 3.8E-08 56.9 10.4 65 96-167 47-117 (161)
369 TIGR00483 EF-1_alpha translati 97.4 0.00053 1.2E-08 70.5 8.0 27 13-39 5-31 (426)
370 TIGR00475 selB selenocysteine- 97.4 0.0019 4.1E-08 69.0 12.4 65 97-168 49-117 (581)
371 cd02021 GntK Gluconate kinase 97.4 0.0018 3.9E-08 56.3 10.3 37 17-58 1-37 (150)
372 TIGR00437 feoB ferrous iron tr 97.4 0.0011 2.4E-08 71.0 10.6 93 96-188 39-136 (591)
373 PRK04213 GTP-binding protein; 97.3 0.0044 9.6E-08 56.4 13.2 21 16-36 10-30 (201)
374 cd04158 ARD1 ARD1 subfamily. 97.3 0.0013 2.7E-08 58.4 9.4 67 96-168 41-114 (169)
375 PF13604 AAA_30: AAA domain; P 97.3 0.0017 3.6E-08 59.7 10.4 115 14-138 17-131 (196)
376 cd04113 Rab4 Rab4 subfamily. 97.3 0.0022 4.8E-08 55.9 10.8 82 97-184 48-139 (161)
377 cd01881 Obg_like The Obg-like 97.3 0.0022 4.7E-08 56.5 10.8 17 20-36 1-17 (176)
378 cd00879 Sar1 Sar1 subfamily. 97.3 0.0013 2.9E-08 59.2 9.6 21 16-36 20-40 (190)
379 PRK09183 transposase/IS protei 97.3 0.002 4.4E-08 61.8 11.3 80 15-114 102-181 (259)
380 PRK01184 hypothetical protein; 97.3 0.0028 6.1E-08 57.1 11.6 27 16-46 2-28 (184)
381 cd04104 p47_IIGP_like p47 (47- 97.3 0.0022 4.7E-08 58.8 10.9 20 17-36 3-22 (197)
382 PRK14957 DNA polymerase III su 97.3 0.037 7.9E-07 58.7 21.4 29 13-41 36-64 (546)
383 cd04110 Rab35 Rab35 subfamily. 97.3 0.002 4.4E-08 58.9 10.7 21 16-36 7-27 (199)
384 PRK12323 DNA polymerase III su 97.3 0.079 1.7E-06 57.0 23.8 96 12-110 35-137 (700)
385 cd02019 NK Nucleoside/nucleoti 97.3 0.00035 7.5E-09 53.1 4.7 33 17-51 1-33 (69)
386 PRK05306 infB translation init 97.3 0.00097 2.1E-08 73.3 9.9 112 13-167 288-402 (787)
387 PLN00223 ADP-ribosylation fact 97.3 0.0014 3.1E-08 59.2 9.5 80 96-182 59-145 (181)
388 cd01863 Rab18 Rab18 subfamily. 97.3 0.0021 4.6E-08 55.9 10.3 83 97-185 48-140 (161)
389 TIGR02238 recomb_DMC1 meiotic 97.3 0.0011 2.4E-08 65.4 9.4 92 14-109 95-203 (313)
390 cd04151 Arl1 Arl1 subfamily. 97.3 0.0013 2.7E-08 57.5 8.8 66 96-167 41-113 (158)
391 cd04157 Arl6 Arl6 subfamily. 97.3 0.0017 3.7E-08 56.4 9.6 67 96-168 43-118 (162)
392 PRK04000 translation initiatio 97.3 0.0022 4.7E-08 65.8 11.8 65 98-168 85-153 (411)
393 cd01865 Rab3 Rab3 subfamily. 97.3 0.0025 5.4E-08 56.1 10.7 82 97-184 49-140 (165)
394 cd04159 Arl10_like Arl10-like 97.3 0.00093 2E-08 57.3 7.8 65 97-168 43-115 (159)
395 PRK05291 trmE tRNA modificatio 97.3 0.007 1.5E-07 62.8 15.5 115 16-168 216-335 (449)
396 cd01867 Rab8_Rab10_Rab13_like 97.3 0.0019 4.1E-08 57.0 9.9 82 97-184 51-142 (167)
397 PF00004 AAA: ATPase family as 97.3 0.00063 1.4E-08 57.1 6.5 69 18-109 1-70 (132)
398 PRK12377 putative replication 97.3 0.002 4.4E-08 61.5 10.6 77 15-111 101-177 (248)
399 PRK05748 replicative DNA helic 97.3 0.0052 1.1E-07 63.7 14.5 117 14-137 202-322 (448)
400 PRK14961 DNA polymerase III su 97.3 0.027 6E-07 56.7 19.3 28 13-40 36-63 (363)
401 PRK04301 radA DNA repair and r 97.3 0.0014 3E-08 64.8 9.7 46 14-59 101-153 (317)
402 cd04119 RJL RJL (RabJ-Like) su 97.3 0.0014 3.1E-08 57.1 8.9 19 18-36 3-21 (168)
403 TIGR02528 EutP ethanolamine ut 97.3 0.0012 2.7E-08 56.4 8.3 19 18-36 3-21 (142)
404 cd04101 RabL4 RabL4 (Rab-like4 97.3 0.0021 4.6E-08 56.1 10.0 67 96-168 50-121 (164)
405 cd01876 YihA_EngB The YihA (En 97.3 0.0046 9.9E-08 53.4 12.0 19 18-36 2-20 (170)
406 PRK07994 DNA polymerase III su 97.3 0.03 6.4E-07 60.4 20.3 28 14-41 37-64 (647)
407 PRK05506 bifunctional sulfate 97.3 0.001 2.2E-08 71.8 9.4 46 12-57 457-502 (632)
408 cd04112 Rab26 Rab26 subfamily. 97.3 0.0018 4E-08 58.7 9.7 82 97-184 49-140 (191)
409 cd03113 CTGs CTP synthetase (C 97.3 0.026 5.6E-07 53.3 17.3 162 17-184 2-231 (255)
410 COG4088 Predicted nucleotide k 97.3 0.00024 5.2E-09 65.2 3.6 37 16-52 2-38 (261)
411 PRK14952 DNA polymerase III su 97.3 0.033 7.1E-07 59.6 20.3 94 13-111 33-132 (584)
412 cd01866 Rab2 Rab2 subfamily. 97.3 0.0039 8.3E-08 55.1 11.4 65 97-167 52-122 (168)
413 cd04162 Arl9_Arfrp2_like Arl9/ 97.3 0.0022 4.7E-08 56.8 9.7 66 96-168 42-113 (164)
414 KOG1805 DNA replication helica 97.2 0.001 2.2E-08 72.6 8.9 55 17-74 687-741 (1100)
415 cd00544 CobU Adenosylcobinamid 97.2 0.0015 3.2E-08 58.8 8.6 84 17-109 1-85 (169)
416 PRK09518 bifunctional cytidyla 97.2 0.0045 9.9E-08 67.8 14.1 117 15-168 275-397 (712)
417 PRK05800 cobU adenosylcobinami 97.2 0.0016 3.4E-08 58.6 8.8 85 17-109 3-88 (170)
418 cd02025 PanK Pantothenate kina 97.2 0.00039 8.4E-09 65.2 5.0 39 17-55 1-41 (220)
419 PRK12299 obgE GTPase CgtA; Rev 97.2 0.004 8.7E-08 62.1 12.6 116 16-168 159-285 (335)
420 PRK05896 DNA polymerase III su 97.2 0.014 2.9E-07 62.3 17.1 91 13-110 36-132 (605)
421 PRK14490 putative bifunctional 97.2 0.00046 9.9E-09 69.7 5.9 40 14-54 4-43 (369)
422 TIGR00450 mnmE_trmE_thdF tRNA 97.2 0.0024 5.2E-08 66.0 11.3 87 96-184 249-338 (442)
423 smart00177 ARF ARF-like small 97.2 0.0014 2.9E-08 58.7 8.3 66 96-167 55-127 (175)
424 TIGR00487 IF-2 translation ini 97.2 0.0013 2.8E-08 70.3 9.4 62 99-167 136-200 (587)
425 PRK14965 DNA polymerase III su 97.2 0.066 1.4E-06 57.3 22.4 28 13-40 36-63 (576)
426 cd04114 Rab30 Rab30 subfamily. 97.2 0.0017 3.7E-08 57.0 8.8 22 15-36 7-28 (169)
427 PRK06647 DNA polymerase III su 97.2 0.13 2.9E-06 54.8 24.5 28 13-40 36-63 (563)
428 PRK06749 replicative DNA helic 97.2 0.003 6.4E-08 65.1 11.7 118 14-137 185-307 (428)
429 cd04142 RRP22 RRP22 subfamily. 97.2 0.0019 4.1E-08 59.4 9.3 71 97-167 48-129 (198)
430 cd04106 Rab23_lke Rab23-like s 97.2 0.0025 5.4E-08 55.5 9.7 83 96-185 49-141 (162)
431 PTZ00035 Rad51 protein; Provis 97.2 0.002 4.3E-08 64.3 10.1 93 14-109 117-225 (337)
432 PRK00454 engB GTP-binding prot 97.2 0.0081 1.7E-07 54.2 13.3 21 16-36 25-45 (196)
433 CHL00189 infB translation init 97.2 0.0012 2.6E-08 72.0 9.0 65 96-167 293-360 (742)
434 COG0572 Udk Uridine kinase [Nu 97.2 0.00075 1.6E-08 62.8 6.5 40 13-54 6-45 (218)
435 PF07755 DUF1611: Protein of u 97.2 0.0071 1.5E-07 59.1 13.5 160 14-184 111-289 (301)
436 cd01131 PilT Pilus retraction 97.2 0.0084 1.8E-07 55.1 13.4 80 17-107 3-84 (198)
437 PRK05642 DNA replication initi 97.2 0.0027 5.9E-08 60.0 10.4 37 16-52 46-82 (234)
438 cd04105 SR_beta Signal recogni 97.2 0.003 6.5E-08 58.2 10.5 20 17-36 2-21 (203)
439 cd02023 UMPK Uridine monophosp 97.2 0.00046 9.9E-09 63.2 4.8 37 17-55 1-37 (198)
440 cd04149 Arf6 Arf6 subfamily. 97.2 0.0017 3.6E-08 57.8 8.3 67 96-168 51-124 (168)
441 cd01861 Rab6 Rab6 subfamily. 97.2 0.0026 5.6E-08 55.3 9.3 65 97-167 48-118 (161)
442 cd04123 Rab21 Rab21 subfamily. 97.2 0.0036 7.7E-08 54.1 10.2 83 97-185 48-140 (162)
443 PRK09519 recA DNA recombinatio 97.2 0.0034 7.3E-08 68.6 12.0 89 14-110 59-151 (790)
444 COG1484 DnaC DNA replication p 97.2 0.003 6.5E-08 60.5 10.4 80 14-113 104-183 (254)
445 cd04115 Rab33B_Rab33A Rab33B/R 97.2 0.0042 9.2E-08 54.9 10.8 83 96-184 49-143 (170)
446 cd01893 Miro1 Miro1 subfamily. 97.2 0.0025 5.4E-08 56.2 9.2 66 96-168 45-117 (166)
447 PRK13695 putative NTPase; Prov 97.2 0.029 6.2E-07 50.2 16.2 31 17-47 2-32 (174)
448 cd04150 Arf1_5_like Arf1-Arf5- 97.2 0.0016 3.5E-08 57.2 8.0 67 96-168 42-115 (159)
449 PRK14964 DNA polymerase III su 97.2 0.065 1.4E-06 56.1 20.9 91 13-110 33-129 (491)
450 cd04125 RabA_like RabA-like su 97.2 0.0044 9.5E-08 55.9 11.0 65 97-167 48-118 (188)
451 TIGR00554 panK_bact pantothena 97.2 0.00074 1.6E-08 65.9 6.1 44 12-55 59-104 (290)
452 cd01868 Rab11_like Rab11-like. 97.2 0.0047 1E-07 54.0 10.8 20 17-36 5-24 (165)
453 cd04138 H_N_K_Ras_like H-Ras/N 97.2 0.0049 1.1E-07 53.3 10.8 19 18-36 4-22 (162)
454 cd01862 Rab7 Rab7 subfamily. 97.2 0.0031 6.8E-08 55.3 9.7 19 18-36 3-21 (172)
455 PRK04040 adenylate kinase; Pro 97.1 0.00081 1.8E-08 61.4 6.0 31 15-46 2-32 (188)
456 PTZ00133 ADP-ribosylation fact 97.1 0.0019 4.2E-08 58.3 8.4 67 96-168 59-132 (182)
457 PRK05636 replicative DNA helic 97.1 0.0098 2.1E-07 62.5 14.7 90 14-107 264-357 (505)
458 PRK00440 rfc replication facto 97.1 0.063 1.4E-06 52.4 19.7 35 17-51 40-74 (319)
459 cd04122 Rab14 Rab14 subfamily. 97.1 0.0038 8.2E-08 54.9 10.0 83 96-184 49-141 (166)
460 TIGR02236 recomb_radA DNA repa 97.1 0.0028 6.1E-08 62.3 10.1 45 14-58 94-145 (310)
461 PF09439 SRPRB: Signal recogni 97.1 0.0039 8.6E-08 56.6 10.1 113 15-167 3-125 (181)
462 TIGR03680 eif2g_arch translati 97.1 0.0025 5.4E-08 65.2 9.9 66 97-168 79-148 (406)
463 PRK08006 replicative DNA helic 97.1 0.0092 2E-07 62.2 14.1 148 14-167 223-388 (471)
464 COG3598 RepA RecA-family ATPas 97.1 0.0084 1.8E-07 58.6 12.7 90 16-106 90-203 (402)
465 cd04140 ARHI_like ARHI subfami 97.1 0.006 1.3E-07 53.6 11.0 66 96-168 47-122 (165)
466 cd01860 Rab5_related Rab5-rela 97.1 0.0015 3.2E-08 57.0 7.1 65 97-167 49-119 (163)
467 COG5256 TEF1 Translation elong 97.1 0.0047 1E-07 62.2 11.1 157 14-188 6-190 (428)
468 COG5192 BMS1 GTP-binding prote 97.1 0.0065 1.4E-07 63.1 12.3 30 13-42 67-96 (1077)
469 PRK14951 DNA polymerase III su 97.1 0.08 1.7E-06 56.9 21.1 97 13-111 36-138 (618)
470 TIGR00041 DTMP_kinase thymidyl 97.1 0.00091 2E-08 60.8 5.7 37 15-51 3-39 (195)
471 cd04107 Rab32_Rab38 Rab38/Rab3 97.1 0.0056 1.2E-07 56.0 10.9 65 96-167 48-123 (201)
472 PRK14958 DNA polymerase III su 97.1 0.025 5.4E-07 59.6 16.9 92 13-111 36-133 (509)
473 TIGR00235 udk uridine kinase. 97.1 0.00079 1.7E-08 62.2 5.1 41 12-54 3-43 (207)
474 PRK14949 DNA polymerase III su 97.1 0.12 2.7E-06 57.3 22.6 28 13-40 36-63 (944)
475 PRK07004 replicative DNA helic 97.1 0.012 2.7E-07 61.1 14.5 91 14-108 212-306 (460)
476 PRK05986 cob(I)alamin adenolsy 97.0 0.004 8.7E-08 56.9 9.4 89 15-106 22-124 (191)
477 cd00157 Rho Rho (Ras homology) 97.0 0.00089 1.9E-08 58.8 5.1 66 96-167 46-117 (171)
478 PRK09111 DNA polymerase III su 97.0 0.078 1.7E-06 56.9 20.7 96 13-110 44-145 (598)
479 PLN03187 meiotic recombination 97.0 0.0038 8.2E-08 62.4 10.1 92 14-109 125-233 (344)
480 TIGR00993 3a0901s04IAP86 chlor 97.0 0.005 1.1E-07 65.8 11.3 118 16-168 119-250 (763)
481 PTZ00301 uridine kinase; Provi 97.0 0.0012 2.6E-08 61.5 5.9 42 14-55 2-45 (210)
482 PRK06904 replicative DNA helic 97.0 0.017 3.6E-07 60.3 15.1 92 14-108 220-316 (472)
483 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.022 4.8E-07 50.6 13.6 87 18-108 5-106 (159)
484 cd00882 Ras_like_GTPase Ras-li 97.0 0.0023 4.9E-08 53.5 7.1 68 96-169 43-117 (157)
485 cd04148 RGK RGK subfamily. Th 97.0 0.0099 2.1E-07 55.5 12.0 65 96-167 48-119 (221)
486 PRK14087 dnaA chromosomal repl 97.0 0.025 5.4E-07 58.7 16.1 92 16-126 142-235 (450)
487 PRK10512 selenocysteinyl-tRNA- 97.0 0.0041 8.9E-08 66.9 10.5 66 97-168 50-118 (614)
488 cd04136 Rap_like Rap-like subf 97.0 0.0086 1.9E-07 52.0 10.8 20 17-36 3-22 (163)
489 PRK04004 translation initiatio 97.0 0.0035 7.7E-08 67.0 9.8 23 14-36 5-27 (586)
490 PTZ00369 Ras-like protein; Pro 97.0 0.0077 1.7E-07 54.5 10.8 82 97-184 52-144 (189)
491 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0072 1.6E-07 54.3 10.5 23 17-39 1-23 (183)
492 cd01672 TMPK Thymidine monopho 97.0 0.0012 2.5E-08 59.7 5.3 35 17-51 2-36 (200)
493 PRK05563 DNA polymerase III su 97.0 0.11 2.4E-06 55.5 20.9 116 13-138 36-157 (559)
494 cd04175 Rap1 Rap1 subgroup. T 97.0 0.0099 2.1E-07 52.0 11.1 81 97-184 48-140 (164)
495 COG2229 Predicted GTPase [Gene 97.0 0.0081 1.8E-07 54.1 10.4 139 14-184 9-155 (187)
496 PRK14956 DNA polymerase III su 97.0 0.041 8.8E-07 57.3 17.0 92 14-111 39-135 (484)
497 cd04147 Ras_dva Ras-dva subfam 97.0 0.0037 8.1E-08 57.0 8.6 65 98-168 47-118 (198)
498 PF01121 CoaE: Dephospho-CoA k 97.0 0.0097 2.1E-07 54.0 11.1 30 17-52 2-31 (180)
499 PRK06321 replicative DNA helic 97.0 0.015 3.1E-07 60.7 13.9 116 14-137 225-344 (472)
500 COG0481 LepA Membrane GTPase L 97.0 0.0024 5.2E-08 65.1 7.7 148 14-184 8-160 (603)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-93 Score=703.26 Aligned_cols=345 Identities=56% Similarity=0.913 Sum_probs=333.0
Q ss_pred CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV 80 (403)
Q Consensus 1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~ 80 (403)
||++.+++++..++|.+|+++|++||||||+|++||+||+++|++|++|.||+|||++++||.+++++.++++|..+...
T Consensus 86 lG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~ 165 (451)
T COG0541 86 LGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK 165 (451)
T ss_pred hCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC
Confidence 57777888888889999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 160 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI 160 (403)
+|++++++++++++...||+|||||+|++++|+.++.|+.++...++|+++++|+|+++||++.+.++.|++.++++|||
T Consensus 166 ~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 166 DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657 161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~ 240 (403)
+||+|+++++|+++++.+.+|.||+|+|+||++++|++|||+++++|+|||||+.+|+|++++.+++++++++++++.+|
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g 325 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKG 325 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHhcCCCCC-CCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 319 (403)
Q Consensus 241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~-~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g 319 (403)
+||++||++|++++.||||++++++||||++ .....+.+.+|+++++|++||+|||++||+||++| ++||++|||+|
T Consensus 326 ~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii--~~SR~rRIA~G 403 (451)
T COG0541 326 KFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDII--NASRKRRIARG 403 (451)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCcccc--ChHHHHHHHhc
Confidence 9999999999999999999999999999998 33333566789999999999999999999999999 58999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657 320 SGKTEQQVSQLVAQLFQMRVRMKNLMGV 347 (403)
Q Consensus 320 sg~~~~~v~~l~~~~~~~~~~~~~~~~~ 347 (403)
||++++|||+||+||++|++|||+|.++
T Consensus 404 SG~sv~dVn~Llkq~~~m~~mmk~m~~~ 431 (451)
T COG0541 404 SGTSVQDVNKLLKQFKQMKKMMKKMSGG 431 (451)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999874
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-86 Score=635.51 Aligned_cols=395 Identities=39% Similarity=0.631 Sum_probs=374.1
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 81 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~ 81 (403)
+.+.+.+.+.+.+|.||+++|++|+||||+|.+||+|++++|++|.+|++|+||++++||+..++...++|+|.++++.+
T Consensus 88 dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d 167 (483)
T KOG0780|consen 88 DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD 167 (483)
T ss_pred CCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc
Confidence 45667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
|+.++.++++.++.++||+||+||.|++..+..++.|+.++.+++.|+.+++|+|+++||.+..+++.|++.+.+.+||+
T Consensus 168 pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIl 247 (483)
T KOG0780|consen 168 PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVIL 247 (483)
T ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~ 241 (403)
||+|+++++|.++++.+.++.||.|||+||+++|||+|+|++|++|+||+||+..|+|++++.. .++..++.+++..|.
T Consensus 248 TKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~kl~~gk 326 (483)
T KOG0780|consen 248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVEKLKQGK 326 (483)
T ss_pred EecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcC
Q 015657 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321 (403)
Q Consensus 242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg 321 (403)
||+.|||+|++.+.||||++++++|||||+.++..+.++.+.++++|.++|+|||++|+++|+++..++||+.|||+|||
T Consensus 327 Ftlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~RvArgSG 406 (483)
T KOG0780|consen 327 FTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMRVARGSG 406 (483)
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHhhCCCcccCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhhhhccCC
Confidence 99999999999999999999999999999988777778888999999999999999999999999889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHHhccccCCCCchhhcccc-chhhhhccCCCCCCCCCCCCC
Q 015657 322 KTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTARRKRR-SESRRQFVDPASTRPSPRGFG 400 (403)
Q Consensus 322 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (403)
++++||.+||.||++|+++||+++ +..|.+|.| ++++ ++.+.+||++++++.. ...++.+.+++ .+++.|+||
T Consensus 407 ~~v~eV~ell~q~~~~~~~~kk~~--~~~G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~mg-~k~mm~~fg 480 (483)
T KOG0780|consen 407 TSVQEVMELLAQYKKFAAMMKKIG--GIKGIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQMG-SKNMMRMFG 480 (483)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc--CCCCccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHhc-cchhhHhhc
Confidence 999999999999999999999998 455778877 4444 7789999999999888 55555555554 899999999
Q ss_pred CCC
Q 015657 401 GGS 403 (403)
Q Consensus 401 ~~~ 403 (403)
|++
T Consensus 481 ~g~ 483 (483)
T KOG0780|consen 481 GGN 483 (483)
T ss_pred CCC
Confidence 974
No 3
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=3.5e-78 Score=610.52 Aligned_cols=341 Identities=57% Similarity=0.928 Sum_probs=322.0
Q ss_pred CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC
Q 015657 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE 79 (403)
Q Consensus 1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~ 79 (403)
||+....+++...+|++|+++|++||||||++++||.+|+++ |++|++|++|+|||++++|+..+++..+++++.....
T Consensus 86 l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~ 165 (433)
T PRK10867 86 LGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDG 165 (433)
T ss_pred hCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCC
Confidence 345555677777789999999999999999999999999998 9999999999999999999999999999999987766
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657 80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 159 (403)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv 159 (403)
.+|.+++.+++..++..+||+|||||||+++.+..++.++..+...+.|+++++|+|+++++++.+.++.|++.+++.|+
T Consensus 166 ~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~gi 245 (433)
T PRK10867 166 QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGV 245 (433)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEE
Confidence 78999999999888777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657 160 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239 (403)
Q Consensus 160 IlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~ 239 (403)
|+||+|++.++|.++++...++.||.|+|+|++++|+++|+|++++++++|+||+.+|+|++++.+++++++++++++.+
T Consensus 246 IlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~ 325 (433)
T PRK10867 246 ILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKK 325 (433)
T ss_pred EEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 319 (403)
Q Consensus 240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g 319 (403)
|+||++||++|++++.||||++++++||||++++.. +.+++++++|++||+|||++||+||++| ++||++|||+|
T Consensus 326 g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~~~~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa~G 400 (433)
T PRK10867 326 GKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMKA---QLDDKELKRIEAIINSMTPKERANPDIL--NGSRKRRIAKG 400 (433)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcccccc---cccHHHHHHHHHHHHcCCHHHHhCcccc--chHHHHHHHcc
Confidence 999999999999999999999999999999987543 3567899999999999999999999999 57999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657 320 SGKTEQQVSQLVAQLFQMRVRMKNLMG 346 (403)
Q Consensus 320 sg~~~~~v~~l~~~~~~~~~~~~~~~~ 346 (403)
||++++|||+||+||++|++|||+|.+
T Consensus 401 sG~~~~~v~~ll~~~~~~~~~~~~~~~ 427 (433)
T PRK10867 401 SGTTVQEVNRLLKQFEQMKKMMKKMKG 427 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999876
No 4
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=3.8e-77 Score=599.57 Aligned_cols=340 Identities=31% Similarity=0.578 Sum_probs=317.0
Q ss_pred CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV 80 (403)
Q Consensus 1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~ 80 (403)
||+....+.+...+|++|+++|++||||||++++||.+|+++|++|++|++|+||+++++|+..+++..++|++......
T Consensus 86 l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~ 165 (429)
T TIGR01425 86 VDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTES 165 (429)
T ss_pred hCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCC
Confidence 35555567777778999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 160 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI 160 (403)
+|..++.++++.++..+||+|||||||+++.+..++.++..+.....|++++||+|++.++++.+++..|++.+++.|+|
T Consensus 166 dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 166 DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 89999999999987779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657 161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~ 240 (403)
+||+|+++++|.++++...++.||.|+|+|++++++++|+|++++++++|+||+.+|+|++++.+++++++++.+++.+|
T Consensus 246 lTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~ 325 (429)
T TIGR01425 246 ITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEG 325 (429)
T ss_pred EECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCch-hhhHhHHHHHHHHHHHhCCCHHhhcC--ccccccCccHHHHH
Q 015657 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPA-QVREAEKSLKIMEAMIEAMTPEEREK--PELLAESPVRRKRV 316 (403)
Q Consensus 241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~-~~~~~~~~~~~~~~~i~smt~~e~~~--p~~~~~~~~r~~ri 316 (403)
+||++||++|++++.||||+++|++||||+++ +... ..+.+++++++|++||+|||++||+| |++|+.++||++||
T Consensus 326 ~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~sR~~RI 405 (429)
T TIGR01425 326 TFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRV 405 (429)
T ss_pred CCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCccHHHHH
Confidence 99999999999999999999999999999984 4221 22467899999999999999999998 99995457999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHH
Q 015657 317 AQDSGKTEQQVSQLVAQLFQMRVR 340 (403)
Q Consensus 317 a~gsg~~~~~v~~l~~~~~~~~~~ 340 (403)
|+|||++++|||+||+||++|++|
T Consensus 406 a~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 406 ARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred HccCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999664
No 5
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=1.9e-76 Score=599.11 Aligned_cols=351 Identities=42% Similarity=0.714 Sum_probs=321.4
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 81 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~ 81 (403)
|+....+.+. .+|++|+++|++|+||||++++||.+|+++|++|++|++|++||++.+|+..++...+++++......+
T Consensus 83 ~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d 161 (437)
T PRK00771 83 GEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKD 161 (437)
T ss_pred CCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccC
Confidence 3333334343 578999999999999999999999999999999999999999999999999999999999987765667
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
+..+++++++.+. .+|+|||||||+++.+..++.|+..+.....|+++++|+|+++++++.+.++.|+..+++.|+|+
T Consensus 162 ~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIl 239 (437)
T PRK00771 162 AVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIII 239 (437)
T ss_pred HHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEE
Confidence 8888889898884 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~ 241 (403)
||+|+++++|.++++...++.||.|+|+|++++|+++|+|+++++++|||||+.+|+|++++.+++++++++.+++.+|+
T Consensus 240 TKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 319 (437)
T PRK00771 240 TKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGK 319 (437)
T ss_pred ecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhc
Q 015657 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDS 320 (403)
Q Consensus 242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gs 320 (403)
||++||++|++++.||||++++++||||+++ ++..+.+.+++++++|++||+|||++||+||++| ++||++|||+||
T Consensus 320 f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~Ria~Gs 397 (437)
T PRK00771 320 FTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEII--NASRIRRIARGS 397 (437)
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHhCcCccccchhhhhcccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHHccC
Confidence 9999999999999999999999999999985 4433334678999999999999999999999999 579999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHH
Q 015657 321 GKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDA 362 (403)
Q Consensus 321 g~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (403)
|++++|||+||+||++|++|||+|.+. .|.+..++++
T Consensus 398 G~~~~~v~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 434 (437)
T PRK00771 398 GTTVEDVRELLKYYKMMKKAMKQLKKG-----KGKMGKLMKQ 434 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC-----CchHHHHHHh
Confidence 999999999999999999999998653 3566666654
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=9.3e-76 Score=592.74 Aligned_cols=341 Identities=57% Similarity=0.932 Sum_probs=317.5
Q ss_pred CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC
Q 015657 1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE 79 (403)
Q Consensus 1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~ 79 (403)
||.....+.+...+|++++++|++||||||++++||.+|. +.|++|++|+||++||++.+|+..++...+++++.....
T Consensus 85 l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~ 164 (428)
T TIGR00959 85 LGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG 164 (428)
T ss_pred hCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC
Confidence 3454455777667899999999999999999999999987 579999999999999999999999999999999987777
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657 80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 159 (403)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv 159 (403)
.+|.+++.++++.+...+||+|||||||+++.|..++.++..+...+.|+++++|+|+++++++.+.+..|...+++.|+
T Consensus 165 ~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~gi 244 (428)
T TIGR00959 165 QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGV 244 (428)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEE
Confidence 78988888898888778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657 160 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239 (403)
Q Consensus 160 IlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~ 239 (403)
|+||+|++.++|.++++...+++||.|+++|++++|+++|+|+++++++||+||+.+|+|++++.+++++++++.+++.+
T Consensus 245 IlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~ 324 (428)
T TIGR00959 245 VLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKK 324 (428)
T ss_pred EEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCch--hhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHH
Q 015657 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVA 317 (403)
Q Consensus 240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~--~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria 317 (403)
|.||++||++|++++.||||++++++||||++++... ..+.+++++++|++||+|||++||+||++| ++||++|||
T Consensus 325 ~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa 402 (428)
T TIGR00959 325 GQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKIL--NPSRRKRIA 402 (428)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccccccccccccccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHH
Confidence 9999999999999999999999999999999865321 123578899999999999999999999999 579999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHH
Q 015657 318 QDSGKTEQQVSQLVAQLFQMRVRMKN 343 (403)
Q Consensus 318 ~gsg~~~~~v~~l~~~~~~~~~~~~~ 343 (403)
+|||++++|||+||+||++|++|||+
T Consensus 403 ~GsG~~~~~v~~ll~~~~~~~~~~~~ 428 (428)
T TIGR00959 403 AGSGTTVQDVNKLIKRFEQMKKMMKK 428 (428)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999888874
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-37 Score=293.39 Aligned_cols=199 Identities=49% Similarity=0.804 Sum_probs=190.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
.++|.+|+++|-.|+||||+.++||++|.++|++|++..||+||.++++|+..++++.|++++......+|..++.++++
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999986678899999999999
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCC------ceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP------TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~------~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
+++..+||+|||||+|+++.+..+|.||..+.+++.+ +++++|+|+++||+++++++.|++.+++.|+|+||+|
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlD 295 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLD 295 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecc
Confidence 9999999999999999999999999999999999864 4589999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 166 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
+++++|.++++.+.++.||+|+|.|+.++||.+|+++.|++.+++
T Consensus 296 gtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 296 GTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred cCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 999999999999999999999999999999999999999887653
No 8
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=1.6e-34 Score=265.40 Aligned_cols=196 Identities=48% Similarity=0.722 Sum_probs=184.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
|++|+++|++||||||++++||++++.+|++|.+|.+|.+|.++++|++.+++..+++++......+|.+.++++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999999889999999999999999999999999999999998877889999999999987
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHH
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 174 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~ 174 (403)
.+++|+|||||||+.+.+...+.++..+.....|+++++|++++.+++....+..|...+++.++|+||+|+..+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 78999999999999999999999999999999999999999999998888888899888999999999999999999999
Q ss_pred HHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 175 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 175 ~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
++...++.||.|++.|++++|+++|+|+.++++++|
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999887
No 9
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=1.5e-32 Score=264.44 Aligned_cols=202 Identities=49% Similarity=0.773 Sum_probs=185.0
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~ 87 (403)
+.....++++++++|++|+||||++++||.++++.|++|+++++|++|+++.+|+..+.+..+++++......+|...+.
T Consensus 65 ~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 65 LIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred hcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 33445678999999999999999999999999999999999999999999999999999999999887766677877777
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
+.+..+...+||+|||||||+.+.+..++.++..+..... |+++++|+|++++++....+..|.+.+++.|+|+
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 7777766688999999999999999999999999988877 8999999999999999999999988889999999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhc
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~l 209 (403)
||+|.+.+.|.++++...++.||.|+++|++++|+++|+|+++++++|
T Consensus 225 TKlDe~~~~G~~l~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred EccCCCCCccHHHHHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999988865
No 10
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=100.00 E-value=6.7e-34 Score=233.85 Aligned_cols=99 Identities=46% Similarity=0.805 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCC----Cc-hhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHH
Q 015657 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----TP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 315 (403)
Q Consensus 241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~----~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~r 315 (403)
+||++||++|++++.||||++++++||||+++. +. ...+.+++++++|++||+|||++||+||++|+ .||++|
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~--~sR~~R 78 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLN--ESRRRR 78 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHH--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccc--hHHHHH
Confidence 599999999999999999999999999999876 22 23456788999999999999999999999995 599999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHH
Q 015657 316 VAQDSGKTEQQVSQLVAQLFQMRVRM 341 (403)
Q Consensus 316 ia~gsg~~~~~v~~l~~~~~~~~~~~ 341 (403)
||+|||++++|||+||++|++|++||
T Consensus 79 IA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 79 IARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998886
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=6.4e-32 Score=265.04 Aligned_cols=205 Identities=46% Similarity=0.777 Sum_probs=185.6
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA 86 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~ 86 (403)
.+.+...++.+++++|++|+||||++.+||.+++..|++|+++++|++|+++.+|+..+....+++++......+|...+
T Consensus 106 ~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v 185 (318)
T PRK10416 106 PLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVA 185 (318)
T ss_pred cccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHH
Confidence 45555567899999999999999999999999999999999999999999999999888999999988876666777776
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 160 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI 160 (403)
.+.+..+...+||+|||||||+++.+..++.++..+.+.+ .|+++++|+|++++++....+..|.+.+++.|+|
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giI 265 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGII 265 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEE
Confidence 6777766668999999999999999999999999988754 4789999999999999999999998889999999
Q ss_pred EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCC
Q 015657 161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~ 211 (403)
+||+|+..++|.++++...++.||.|+++|++++|+++|+|+.++++++|-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998863
No 12
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=5.4e-32 Score=266.48 Aligned_cols=199 Identities=46% Similarity=0.760 Sum_probs=188.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..+|.+|+++|++|+||||++++||.+|...|++|+++++|++|.++.+|+..++...+++++......+|..++.++++
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999887767788888888888
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG 171 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~ 171 (403)
.++..+||+|||||+|+++.+..++.+|..+...+.|+.+++|+|+.+++++.++++.|...+++.|+|+||+|.+.++|
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG 296 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCcc
Confidence 88778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 172 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 172 ~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
.++++...++.||.|+++|++++|+++|+|+.++++++|
T Consensus 297 ~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 297 AALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred HHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999886
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=2e-27 Score=235.03 Aligned_cols=194 Identities=25% Similarity=0.383 Sum_probs=172.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+|++|+++|++||||||++++||..|..+|++|+++++|++|.++++|+..+++..+++++... ++.. +.+++..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~-L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHH-HHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999988653 3444 3467777
Q ss_pred HHh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 93 AKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 93 ~~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
+.. .+||+|||||||+.+.+...+.++..+.....|+.++||++++ ..++...+++.|.. +++.++|+||+|.+.++
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~ 393 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS 393 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCc
Confidence 653 3699999999999998889999999998888899999999995 45677888889986 89999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 211 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~ 211 (403)
|.++++...+++||.|++.|+++ +|+....++.++.+++|-
T Consensus 394 G~iLni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred cHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999999998 689999998898888774
No 14
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.95 E-value=4.8e-27 Score=231.70 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=170.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++++++++|++||||||++++||.++..+|++|.+|++|+||+++.+|+..+++..+++++.. .+|.+ +.+++..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~d-L~~al~~ 279 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAE-LEEAVQY 279 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHH-HHHHHHH
Confidence 4679999999999999999999999998999999999999999999999999999999998754 24554 4666776
Q ss_pred HH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 93 AK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 93 ~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
+. ..+||+|||||||+.+.+...+.++..+...+.|+.+++|+++ ...++....+..|. .+++.|+|+||+|.+.++
T Consensus 280 l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~ 358 (407)
T PRK12726 280 MTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRI 358 (407)
T ss_pred HHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCc
Confidence 64 2579999999999999999999999999988888998999998 44467777666665 688999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCcC-CCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERME-DLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v~-~l~~f~~~~~~~r~lG~~ 212 (403)
|.++++...++.||.|+++|++++ ++..++++.++.+++|-+
T Consensus 359 G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 359 GDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred cHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 999999999999999999999995 588888888888888754
No 15
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.95 E-value=1.4e-26 Score=232.03 Aligned_cols=193 Identities=26% Similarity=0.355 Sum_probs=164.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh----CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~----~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
..|++++++|++|+||||++++||+++.. +|++|.+|++|+||.++.+|+..+++..++|+..... + ..+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~-~~l~~ 247 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F-KDLKE 247 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H-HHHHH
Confidence 45789999999999999999999999873 5899999999999999999999999999999875532 2 33455
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC-CceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~-~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.+..+ .+||+|||||+|+.+.+...+.++..+..... +.+++||+++++++.... .+..|. .+++.|+|+||+|+
T Consensus 248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDe 324 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDE 324 (388)
T ss_pred HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccC
Confidence 55555 68999999999999877666778888777665 458999999987754444 334443 57899999999999
Q ss_pred CCchhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 167 DSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 167 ~~~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
+.++|.++++...++.||.|++.|+++ +|+.+|+|..++++++|+.
T Consensus 325 t~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~ 371 (388)
T PRK12723 325 TTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR 371 (388)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC
Confidence 999999999999999999999999999 8999999999999999985
No 16
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.94 E-value=1.2e-25 Score=239.10 Aligned_cols=193 Identities=29% Similarity=0.436 Sum_probs=170.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
++++++++|++||||||++.+||.++. .+| ++|.++++|.||.++.+|+..+++..+++++... ++.+ +.+++.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~ 259 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALA 259 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHH
Confidence 468999999999999999999999885 566 6999999999999999999999999999887543 3544 577777
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhc--CCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIE--IGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~--~~i~GvIlNk~D~~~ 168 (403)
.+ .++|+|||||||+.+.+..++.++..+.....|++++||+|+++. ++..+++..|... .++.|+|+||+|++.
T Consensus 260 ~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 260 AL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred Hh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 76 588999999999999888899999988888889999999999765 4555577888754 378999999999999
Q ss_pred chhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 169 RGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 169 ~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
++|.++++...+++||.|++.|+++ +|+++|+++.+++++++..
T Consensus 338 ~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred CccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 9999999999999999999999999 8999999999999999864
No 17
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.94 E-value=3e-25 Score=222.17 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=156.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH-HhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L-~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
++++++++|++||||||++++||..+ ...|++|+++++|+||+++.+++..+++..+++++... .+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------DIKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------HHHHHHHH
Confidence 46889999999999999999999866 57799999999999999999999999999999876431 12334444
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc---CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL---NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~---~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
+...+||+|||||||+.+.+...+.++..+.... .+.+++||++++.+++....+..+-..+++.|+|+||+|.+.+
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADF 374 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCC
Confidence 4447899999999999888888888888887765 3568999999988875555544444789999999999999999
Q ss_pred hhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhh
Q 015657 170 GGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRI 208 (403)
Q Consensus 170 ~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~ 208 (403)
+|.++++...++.||.|++.|+++ +|++.+.+..+++.+
T Consensus 375 ~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i 414 (432)
T PRK12724 375 LGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECV 414 (432)
T ss_pred ccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHh
Confidence 999999999999999999999998 678877776655443
No 18
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.93 E-value=2e-24 Score=207.04 Aligned_cols=193 Identities=25% Similarity=0.384 Sum_probs=170.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++.+++++|++|+||||++..|+..+..+|++|.++++|.+|.++.+|+..+.+..+++++... ++.. +.+++..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHH
Confidence 4578999999999999999999999988899999999999999999999888888888887542 3333 45666666
Q ss_pred Hh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh
Q 015657 94 KK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGG 171 (403)
Q Consensus 94 ~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~ 171 (403)
.. .++|+|||||||+.+.+...+.++..+.....|+.++||++++ .++++.++++.|.. +++.|+|+||+|...+.|
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G 228 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSG 228 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCcc
Confidence 42 4799999999999998999999999999988999999999995 56889999999986 899999999999999999
Q ss_pred HHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657 172 AALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 211 (403)
Q Consensus 172 ~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~ 211 (403)
.++++...++.||.|++.|+++ +|+..++++.++.+++|-
T Consensus 229 ~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 229 ELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 9999999999999999999999 589999998888888763
No 19
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.93 E-value=4.4e-24 Score=192.03 Aligned_cols=172 Identities=67% Similarity=1.027 Sum_probs=153.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
+++++|++|+||||++.+|+..+++.|++|+++++|++++...+++..+....+++++......++.+.+.+.+..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999999999999999999988888888888999888766667888877777776667
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHH
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 176 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~ 176 (403)
++|+|||||||....+...+.++..+.....++.+++|+++.+.+++...+..+....++.++|+||+|...+.+.+.++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 99999999999988788888888888777778999999999877888888888877778999999999999999999999
Q ss_pred HHHhCCCeEEee
Q 015657 177 KEVSGKPIKLVG 188 (403)
Q Consensus 177 ~~~~g~pi~fig 188 (403)
...++.|+.|+|
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999998875
No 20
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.92 E-value=4.2e-24 Score=217.51 Aligned_cols=191 Identities=36% Similarity=0.508 Sum_probs=161.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++++|+|++||||||++++||.+++ ..|++|.+|++|+||.++.+++..++...+++++.... +. -+...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~-~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PK-ELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HH-hHHHHHHH
Confidence 56899999999999999999999998 45899999999999999999999999999998876533 22 23344555
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhh-hcCCceEEEEEecccHHHH-HHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~-~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
+ .+||+|||||||+.+.+...+.++..+.. ...+..+++|++++..... ...+..|. .+++.++|+||+|.....
T Consensus 297 ~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~ 373 (424)
T PRK05703 297 L--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSL 373 (424)
T ss_pred h--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccc
Confidence 4 47999999999999888888888888777 4456789999999776544 44455565 677889999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
|.+.++...+++|+.|++.|+++ +|+++|+++.+++++++..
T Consensus 374 G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 374 GSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred cHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 99999999999999999999997 8999999999999988764
No 21
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.92 E-value=8.9e-24 Score=208.96 Aligned_cols=192 Identities=36% Similarity=0.525 Sum_probs=169.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
+.++++++|+.||||||+.++||+.+. ...++|.+|..|.||-++++|+.++++..++|+..... | .-+..++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~---~-~el~~ai~ 277 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS---P-KELAEAIE 277 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC---H-HHHHHHHH
Confidence 579999999999999999999999998 45689999999999999999999999999999887633 3 33455566
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ .+||+|+|||+|+-+.|...+.+|..+.....+..+.||+++++ ..+...++..|. .+++.|+|+||+|.....
T Consensus 278 ~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 278 AL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSL 354 (407)
T ss_pred Hh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCch
Confidence 66 57899999999999999999999999999998899999999954 466666777775 588999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
|.+.++...++.||.|+..|.++ +|+....+.-++++++|.-
T Consensus 355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 99999999999999999999998 6788888888888888765
No 22
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-24 Score=214.98 Aligned_cols=188 Identities=35% Similarity=0.582 Sum_probs=171.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc------CCceEeCCCCCCHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV------GVPVYTAGTEVKPSQI 85 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~------gv~v~~~~~~~~~~~~ 85 (403)
.++|.+|.++|-.|+||||..+++|+||.+.+++|++..||++|+++++||+.+.+.. -+++|..+-..++..+
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 4689999999999999999999999999999999999999999999999998887765 5777877778889999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-------CeeE
Q 015657 86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-------GITG 158 (403)
Q Consensus 86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-------~i~G 158 (403)
+++++++++.++||+|+|||+|+.+.+..+|.+|..+..+..||-+++|-.|..|.+++..++.|+..+ .|.|
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 999999999999999999999999999999999999999999999999999999999999988887532 4899
Q ss_pred EEEccCCC-CCchhHHHHHHHHhCCCeEEeeccCCcCCCCCC
Q 015657 159 AILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF 199 (403)
Q Consensus 159 vIlNk~D~-~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f 199 (403)
+|+||+|- +...|++.++.+.++.||.|+|+|....||...
T Consensus 535 ~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l 576 (587)
T KOG0781|consen 535 ILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKL 576 (587)
T ss_pred EEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhc
Confidence 99999994 467789999999999999999999988886653
No 23
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.92 E-value=1.4e-23 Score=214.86 Aligned_cols=192 Identities=32% Similarity=0.453 Sum_probs=158.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
++.|++++|++||||||++++||.++. ++| ++|.+|++|+||.++.+++..+++..++++....... +... .+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~---Dl~~-aL~ 330 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA---DLRL-ALS 330 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCch---hHHH-HHH
Confidence 468999999999999999999999885 456 5999999999999999999999999999887553322 2222 233
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCCch
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ .++|+++|||+|+.+.+..+...+..+.....|...+||+|++++..... .++.|. ...+.|+|+||+|...+.
T Consensus 331 ~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~~~~g~IlTKlDet~~~ 407 (484)
T PRK06995 331 EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASL 407 (484)
T ss_pred hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cCCCCEEEEeCCCCcccc
Confidence 33 57899999999998877666666655555555778999999977655555 444454 578999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
|.++++...+++||.|+++|+++ +||+.|+++.+++++++.+
T Consensus 408 G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 408 GGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred hHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 99999999999999999999999 9999999999999999875
No 24
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.91 E-value=6.1e-23 Score=204.38 Aligned_cols=193 Identities=30% Similarity=0.405 Sum_probs=162.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
...+++++|++|+||||++++||..+. +.| .+|.++.+|.+|.++.+++..+++..++++.......+. ...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l----~~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL----QLALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH----HHHHH
Confidence 457899999999999999999999876 446 699999999999999999999999999998876544332 33444
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH-HHHHHHhhhcC--------CeeEEEEc
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEI--------GITGAILT 162 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~--------~i~GvIlN 162 (403)
.+ .++|+|||||+|+.+.+..+..++..+.....+..++||++++++.+. ...++.|.... ++.|+|+|
T Consensus 212 ~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 212 EL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred Hh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEe
Confidence 44 578999999999998888888888887666667889999999776554 44667776542 58899999
Q ss_pred cCCCCCchhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 163 KLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 163 k~D~~~~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
|+|...+.|.++++...+++||.|+++|+++ +++....++.++++.++..
T Consensus 290 KlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~~ 340 (374)
T PRK14722 290 KLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAP 340 (374)
T ss_pred ccccCCCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999 5789988888888877643
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.89 E-value=9.1e-22 Score=201.50 Aligned_cols=190 Identities=33% Similarity=0.402 Sum_probs=155.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
...+|+|+|++|+||||++.+|+.++..+ |++|.++++|.|+.+..+++..++...++++..... ...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d----~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS----AESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc----HHHHHHHHH
Confidence 35789999999999999999999988765 589999999999999999998888888888775422 233445566
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ .+||+|||||+|....+...+.++..+.... ....++|+++.. ..+....++.|.. .++.|+|+||+|...+.
T Consensus 425 ~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~l 500 (559)
T PRK12727 425 RL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRF 500 (559)
T ss_pred Hh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccch
Confidence 55 5799999999999887877777776554433 467789999854 4666667777764 57899999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 211 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~ 211 (403)
|.++++...+++||.|++.|+++ +||+.|++..++++...+
T Consensus 501 G~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l 542 (559)
T PRK12727 501 GSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDL 542 (559)
T ss_pred hHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999 799999998777765443
No 26
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.88 E-value=1.1e-21 Score=198.21 Aligned_cols=192 Identities=27% Similarity=0.385 Sum_probs=163.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
++.+++++|+.|+||||++++||..+. .. +.+|.++.+|.+|.++.+|+..+++..|+++..... +.+ +..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~d-l~~al~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IAD-LQLMLH 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHH-HHHHHH
Confidence 467899999999999999999998764 33 478999999999999999999999999999886543 333 234445
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ .++|+|+|||+|+.+.+..++.++..+.....+..++||+++++. +++...+..|. .+++.|+|+||+|...+.
T Consensus 266 ~l--~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 266 EL--RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASL 342 (420)
T ss_pred Hh--cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCc
Confidence 54 689999999999998888888898888766667899999999765 45555555554 589999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~ 212 (403)
|.++++...+++||.|++.|+++ +|++.|+++.+++++++..
T Consensus 343 G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 343 GIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred cHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 99999999999999999999999 8999999999999999865
No 27
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.82 E-value=2.8e-19 Score=177.40 Aligned_cols=293 Identities=20% Similarity=0.308 Sum_probs=204.0
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
++|.|+ +||||||++..|.++|+++|++|. +++ |+++|+. .+....|.++.+.+.|....+.++..+.+.
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq-----pfKvGPDYIDP~-~H~~atG~~srNLD~~mm~~~~v~~~f~~~- 75 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ-----PFKVGPDYIDPG-YHTAATGRPSRNLDSWMMGEEGVRALFARA- 75 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc-----ccccCCCccCch-hhhHhhCCccCCCchhhcCHHHHHHHHHHh-
Confidence 678888 999999999999999999999998 554 7777776 356677999999999998889898888877
Q ss_pred hCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEec-ccHHHHHHHHH---HhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALVT---TFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda-~~g~~~~~~~~---~~~~~~~i~GvIlNk~D~~ 167 (403)
..+.|+.||++..++... ..-..+..++++.+. .+|+||+|+ ...+++..+++ .|++.+++.|||+|++.+.
T Consensus 76 ~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgse 154 (451)
T COG1797 76 AADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSE 154 (451)
T ss_pred cCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCH
Confidence 478999999999888753 112456677788887 899999999 45567777765 5678999999999999999
Q ss_pred CchhHHHHHHHH-hCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHH
Q 015657 168 SRGGAALSVKEV-SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 246 (403)
Q Consensus 168 ~~~~~~~~~~~~-~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~ed 246 (403)
+|...+..+.+. +++|| +|+.++.++++. | +||||+-...+.. .+++ .-+....+.+..+|++.
T Consensus 155 rH~~llr~Ale~~~gv~v--lG~lpr~~~l~l--p----~RHLGLV~a~E~~-~~~~------~~~~~a~~v~~~vDld~ 219 (451)
T COG1797 155 RHYELLRDALEEYTGVPV--LGYLPRDDDLEL--P----SRHLGLVPASERL-ELEA------KLEALAEVVEKHVDLDA 219 (451)
T ss_pred HHHHHHHHHhhhcCCCcE--EEEecCCcccCC--c----ccccccccchhhh-hHHH------HHHHHHHHHHhhCCHHH
Confidence 999999888887 88888 999999888776 6 9999998666543 1222 22334445567899998
Q ss_pred HHHHHHHHHhcCChhHHHhcCCCCCCCCchhh----hH-----hHHHHHHHHHH------HhCCCHHhhc-CccccccCc
Q 015657 247 FLKQTRTVARMGSMSRVIGMIPGMGKITPAQV----RE-----AEKSLKIMEAM------IEAMTPEERE-KPELLAESP 310 (403)
Q Consensus 247 l~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~----~~-----~~~~~~~~~~~------i~smt~~e~~-~p~~~~~~~ 310 (403)
+++...... ++.--+.-.|...+-....+ +. =+..+.-++.. .+.+..+|.- +-+.+
T Consensus 220 l~~ia~~~~---~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~v---- 292 (451)
T COG1797 220 LLEIASSAG---PLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAV---- 292 (451)
T ss_pred HHHHHhccC---CCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEE----
Confidence 887665432 22211122121111000000 00 03455656555 5666666654 22322
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657 311 VRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347 (403)
Q Consensus 311 ~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~ 347 (403)
=-|-|..+---.+ |.+-+.|++.++++...
T Consensus 293 ------YlgGGYPElfA~~-L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 293 ------YLGGGYPELFAEE-LSANESMRRAIKAFAAA 322 (451)
T ss_pred ------EeCCCChHHHHHH-HhhCHHHHHHHHHHHHc
Confidence 2345555544443 44556677777877653
No 28
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.73 E-value=5.8e-17 Score=150.65 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=104.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHH--------------hhhccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI--------------LGEQVG 70 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~--------------~~~~~g 70 (403)
++|+|.|+|||||||++.+||.+|+++|+||++||+|++...... .+.. .....|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 468888999999999999999999999999999999998643210 0000 001236
Q ss_pred CceEeCCCCCCHH-----------HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc
Q 015657 71 VPVYTAGTEVKPS-----------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 139 (403)
Q Consensus 71 v~v~~~~~~~~~~-----------~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~ 139 (403)
+++++.+...... ..++ .+..+ .++||||||||+|.+...... ..+. .-.++.+++|+++..
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~----~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIR----EGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-cccc----cccCcEEEEEecccH
Confidence 6676655432111 1122 33334 468999999998876422111 0000 012478888888732
Q ss_pred --H---HHHHHHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeecc
Q 015657 140 --G---QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190 (403)
Q Consensus 140 --g---~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~g 190 (403)
. ....+.++.+.. ...+.|+|+|+++...+...+.++.+.++.|+ ++..
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v--l~~I 209 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV--IHFV 209 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE--EEec
Confidence 1 223333444433 55678999999997655556677888888887 5444
No 29
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.72 E-value=9.2e-17 Score=154.97 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh------------hhccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL------------GEQVGV 71 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~------------~~~~gv 71 (403)
++|+|+|+|||||||++.+||..|+++|+||++||+|++.+....- +... ....|+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~~i 81 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI 81 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCCCe
Confidence 5677779999999999999999999999999999999987543211 1000 001245
Q ss_pred ceEeCCCCCC------H----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657 72 PVYTAGTEVK------P----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT 139 (403)
Q Consensus 72 ~v~~~~~~~~------~----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~ 139 (403)
.+++.+.... . ...+.+.+..+ +.+||||||||+|.+..+. +...+ ....++.+++|+.+ ..
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~-~~~~~----al~aad~vlip~~p~~~s 155 (273)
T PRK13232 82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGG-FAMPI----REGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECC-Eeccc----cccccceEEEecCchHHH
Confidence 5555432100 0 01244555555 3679999999988764221 11000 01124788888876 22
Q ss_pred HHHHHHH---HHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 140 GQEAAAL---VTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 140 g~~~~~~---~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
...+... +..+ +..+.+.|+|+|+.+..........+.+.++.++ .+..+.
T Consensus 156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~ 210 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL--IHFVPR 210 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCe--EEECCC
Confidence 2333333 3322 3456788999998864433445566777777665 444443
No 30
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.72 E-value=5e-16 Score=139.20 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=97.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
.+.+++||+||||++.+||.++++.|++|++||+|++++.....+. .......++..+..+...+
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~ 67 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWGE 67 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcCC
Confidence 3445779999999999999999999999999999999986532110 0112334555555554468
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhh-hcCCeeEEEEccCCCC----Cc-
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFN-IEIGITGAILTKLDGD----SR- 169 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~----~~- 169 (403)
||+||||||+.+.. ... .+......+.+++|+.+. ...++....+.+. ...++.|+|+|+++.. ..
T Consensus 68 yD~VIiD~pp~~~~--~~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~ 141 (169)
T cd02037 68 LDYLVIDMPPGTGD--EHL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKK 141 (169)
T ss_pred CCEEEEeCCCCCcH--HHH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCc
Confidence 99999999998642 111 111112348888888773 3334444444333 3567889999999752 11
Q ss_pred -----hhHHHHHHHHhCCCeEEeeccC
Q 015657 170 -----GGAALSVKEVSGKPIKLVGRGE 191 (403)
Q Consensus 170 -----~~~~~~~~~~~g~pi~fig~ge 191 (403)
......+.+.++.|+ ++..|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~--~~~ip 166 (169)
T cd02037 142 IYIFGKGGGEKLAEELGVPL--LGKIP 166 (169)
T ss_pred ccccCCccHHHHHHHcCCCE--EEecc
Confidence 124455666677766 66554
No 31
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.71 E-value=2.2e-16 Score=152.36 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=98.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHH-----------hhhccCCc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI-----------LGEQVGVP 72 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~-----------~~~~~gv~ 72 (403)
++|+|+|+|||||||+|.+||..|+++|+||++||+|++..... +-+.. .....|+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~ 81 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR 81 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence 57888899999999999999999999999999999999864321 11110 00123555
Q ss_pred eEeCCCCCC------HHHHHH-HHHHHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--c
Q 015657 73 VYTAGTEVK------PSQIAK-QGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T 139 (403)
Q Consensus 73 v~~~~~~~~------~~~~~~-~~l~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~ 139 (403)
+++++.... ....++ ..++.+. .++||||||||+|.+..+. +. .......++.+++++.+. .
T Consensus 82 ~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~-l~----~~~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGG-FA----MPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred EEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCC-cc----cccccccccEEEEEecCchhH
Confidence 665431111 111111 2333331 2579999999987653211 11 000001247888888762 2
Q ss_pred HHH---HHHHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657 140 GQE---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 140 g~~---~~~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
... ..+.++.. +..+.+.|+|+|+............+.+.++.++ ++..+..
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~~~e~~~~l~~~~~~~l--l~~Ip~~ 213 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKIGTQM--IHFVPRD 213 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCchHHHHHHHHHHcCCce--EEeCCCC
Confidence 222 22222333 3456778999997653333445566667777665 4544443
No 32
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.69 E-value=7.2e-16 Score=154.73 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=103.4
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc----cCCceEe---CCC--------
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ----VGVPVYT---AGT-------- 78 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~----~gv~v~~---~~~-------- 78 (403)
.++|+|+ |+||+||||+|.+||..|++.|+||++||+|+++|.....+...... .+..+.+ .+.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l 186 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYL 186 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHh
Confidence 3677665 88999999999999999999999999999999998764322100000 0111111 000
Q ss_pred ----------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHH
Q 015657 79 ----------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAAL 146 (403)
Q Consensus 79 ----------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~ 146 (403)
.......+++.+....++.||||||||||++.... + .+...+..+.+++|+.+. ...++.+.
T Consensus 187 ~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~-l-----~~~~l~aad~viiV~tp~~~s~~da~~~ 260 (369)
T PRK11670 187 VTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQ-L-----TLAQNIPVTGAVVVTTPQDIALIDAKKG 260 (369)
T ss_pred cCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHH-H-----HHhhhccCCeEEEEecCchhHHHHHHHH
Confidence 00112334555533335789999999999874211 1 111222347777777662 22344444
Q ss_pred HHHh-hhcCCeeEEEEccCCCCCc----------hhHHHHHHHHhCCCeEEeeccCCc
Q 015657 147 VTTF-NIEIGITGAILTKLDGDSR----------GGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 147 ~~~~-~~~~~i~GvIlNk~D~~~~----------~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
+..+ +..+++.|+|+|+++.... .+....+.+.++.|+ ++..+..
T Consensus 261 i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~l--l~~IP~~ 316 (369)
T PRK11670 261 IVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQL--LGQMPLH 316 (369)
T ss_pred HHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcE--EEEeCCC
Confidence 4443 3467889999999874311 123566777788876 5554443
No 33
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.69 E-value=4.2e-16 Score=150.46 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHH------------HHHHh------------hhccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAID------------QLVIL------------GEQVG 70 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~------------~l~~~------------~~~~g 70 (403)
++|+|+|+|||||||+|.+||+.|++ +|+||++||+|++...+.. -+... ....|
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence 67888899999999999999999997 5999999999999754321 11000 00135
Q ss_pred CceEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657 71 VPVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-- 138 (403)
Q Consensus 71 v~v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-- 138 (403)
+++++++.... .... +++.++.+ .++||||||||++.+..+. +...+.. ..++.+++|+.+.
T Consensus 83 l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~iliD~~~~~~~~a-l~~~~~~----~aad~viIp~~p~~~ 156 (275)
T PRK13233 83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAY-TDDLDFVFFDVLGDVVCGG-FAMPIRD----GKAQEVYIVASGEMM 156 (275)
T ss_pred cEEEECCCCCCCCCCCCcchhHHHHHHHHcCCc-cCCCCEEEEecCCceeecc-ccccchh----ccCceEEEeccccHH
Confidence 66666553221 1112 23444444 3679999999977543211 1100000 1247888888873
Q ss_pred cHHHHHHH---HHH--hhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 139 TGQEAAAL---VTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 139 ~g~~~~~~---~~~--~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
.-..+... +.. .+..+.+.|+|+|+............+.+.++.++
T Consensus 157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQM 207 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCce
Confidence 22222222 221 24567789999998643333345566667777765
No 34
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.69 E-value=1e-15 Score=149.48 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=103.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHH-------------hhh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGE 67 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~-------------~~~ 67 (403)
...+++.+.|+|||||||++.+||..|+++|+||++||+|++.+.. .+-+.. ...
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~ 83 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTG 83 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeC
Confidence 3569999999999999999999999999999999999999875332 111110 111
Q ss_pred ccCCceEeCCCCC------CHHHHHHHHHHHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 68 QVGVPVYTAGTEV------KPSQIAKQGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 68 ~~gv~v~~~~~~~------~~~~~~~~~l~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
..|+.+++++... ...... .++.+. +.+||||+|||++...... +...+. ...+|.+++|+.+
T Consensus 84 ~~gv~llpa~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~yD~vliD~~~~~~~~~-~~~~~~----l~aAD~vIIvttp 156 (296)
T PRK13236 84 FRGVKCVESGGPEPGVGCAGRGIIT--AINFLEENGAYQDLDFVSYDVLGDVVCGG-FAMPIR----EGKAQEIYIVTSG 156 (296)
T ss_pred CCCeEEEECCCCCCCCCCcceeehh--hhHHHHhcCccccCCEEEEeccccceecc-ccccch----hccCCEEEEecCc
Confidence 2467777754211 111111 233332 3689999999976542211 110000 1234788888877
Q ss_pred --ccHHHHHHH----HHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657 138 --MTGQEAAAL----VTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 138 --~~g~~~~~~----~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
..-..+.+. .+.. +..+++.|+|+|+.+..........+.+.++.++ ++..+..
T Consensus 157 e~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~ile~l~~~~g~~v--l~~Ip~~ 217 (296)
T PRK13236 157 EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQM--IHFVPRD 217 (296)
T ss_pred chHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHHHHHHHHHhCccc--eeeCCCC
Confidence 222222222 1122 4467788999999754433345566777787766 4555443
No 35
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.68 E-value=6.1e-16 Score=148.41 Aligned_cols=168 Identities=19% Similarity=0.218 Sum_probs=99.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHHhh------------hccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVILG------------EQVGV 71 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~~~------------~~~gv 71 (403)
++|+|+|+|||||||+|.+||.+|+++|+||++||+|++..... +.+.... ...++
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 81 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI 81 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCCCe
Confidence 56777899999999999999999999999999999999864331 1111000 01355
Q ss_pred ceEeCCCCCC-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-
Q 015657 72 PVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 139 (403)
Q Consensus 72 ~v~~~~~~~~-----------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~- 139 (403)
.+++.+.... ....+ +.+..+ ..+||||||||||.+..... ... + .....|.+++++.+..
T Consensus 82 ~~ip~~~~~~~~~~~~~~~~~~~~~l-~~l~~~-~~~yD~viID~~g~~~~~~~-~~~---~-~~~aaD~vlip~~p~~~ 154 (270)
T cd02040 82 KCVESGGPEPGVGCAGRGVITAINLL-EELGAY-EDDLDFVIYDVLGDVVCGGF-AMP---I-REGKAQEIYIVTSGEMM 154 (270)
T ss_pred EEEeCCCCCCCCCCcCcchhhHHHHH-HhcCcc-ccCCCEEEEecccCcccCCc-ccc---c-ccccccEEEEEecCchH
Confidence 6666543221 11111 223333 35799999999886532111 000 0 0112478888887732
Q ss_pred -HHH---HHHHHHHhh--hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 140 -GQE---AAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 140 -g~~---~~~~~~~~~--~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
-.. ....+..+. ....+.|||+|+............+.+.++.++ ++..+.
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~v--l~~Ip~ 211 (270)
T cd02040 155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQM--IHFVPR 211 (270)
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCe--EeecCC
Confidence 122 222333333 245678899998654333445566777788876 454443
No 36
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.68 E-value=7.9e-16 Score=145.77 Aligned_cols=164 Identities=23% Similarity=0.342 Sum_probs=100.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHH---------hhhccCCceE
Q 015657 17 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI---------LGEQVGVPVY 74 (403)
Q Consensus 17 iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~---------~~~~~gv~v~ 74 (403)
+|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+... ..+.. .....++.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 45555 77999999999999999999999999999999643211 11100 0012345566
Q ss_pred eCCCCCC-----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHH
Q 015657 75 TAGTEVK-----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV 147 (403)
Q Consensus 75 ~~~~~~~-----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~ 147 (403)
+.+.... ....+.+.+..+. ..||+||||||+.+.. ..... ....|.+++|+++. ....+....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~------l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTA------LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHH------HHhCCeEEEEECCCCchHHHHHHHH
Confidence 6543221 1234566677764 6899999999998753 11111 12348889998873 223333332
Q ss_pred HHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657 148 TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191 (403)
Q Consensus 148 ~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge 191 (403)
... .....+.++|+|+++..........+.+.++.|+ ++..+
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~~~~~--l~~Ip 195 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKTELGREEIETILEVPV--LGVVP 195 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhhhhHHHHHHHhhCCcE--EEEec
Confidence 211 2345678999999987532222334455577776 44443
No 37
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.67 E-value=9.8e-16 Score=149.19 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=97.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHH--------------hhhccCCc
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI--------------LGEQVGVP 72 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~--------------~~~~~gv~ 72 (403)
|+++|+|||||||+|.+||.+|+++|+||++||+|++...... -+.. .....|+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 8899999999999999999999999999999999998643210 0100 00013566
Q ss_pred eEeCCCCCCHHH-------HHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHH
Q 015657 73 VYTAGTEVKPSQ-------IAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQE 142 (403)
Q Consensus 73 v~~~~~~~~~~~-------~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~ 142 (403)
+++.+......+ .....++.+. .++||||||||++.+.... +... ...++.+++++++.. -..
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a-~~aa------l~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGG-FAAP------LNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceech-hhhh------hhcCCEEEEEecCCHHHHHH
Confidence 666554321111 0111222222 1479999999988753211 1111 123488888888732 223
Q ss_pred HHHHH---HHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 143 AAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 143 ~~~~~---~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
+.... +.. +..+.+.|+|+|+++.. ..+....+.++.|+ ++..+.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~---~~~~~~~~~~~~~v--l~~Ip~ 205 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPV--LEVLPL 205 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCch---hHHHHHHHHcCCce--EEECCC
Confidence 32332 322 23456789999999843 33455666778776 444443
No 38
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.67 E-value=6.1e-16 Score=151.02 Aligned_cols=172 Identities=19% Similarity=0.192 Sum_probs=103.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHH--------h-----hhc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI--------L-----GEQ 68 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~--------~-----~~~ 68 (403)
+.++|+|+|+||+||||++.+||..|++.|+||++||+|++.+.. .+-+.. . ...
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGY 82 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheecC
Confidence 457888889999999999999999999999999999999975333 111100 0 112
Q ss_pred cCCceEeCCCCCC------HHHHHH-HHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657 69 VGVPVYTAGTEVK------PSQIAK-QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-- 138 (403)
Q Consensus 69 ~gv~v~~~~~~~~------~~~~~~-~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-- 138 (403)
.|+++++.+.... ....++ ..++.+. .++||||||||++.+..+. +...+ ....++.+++++.+.
T Consensus 83 ~gl~lipa~~~~~~~~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~na-l~~~~----~~~aAD~vIIPv~pe~~ 157 (295)
T PRK13234 83 KGIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGG-FAMPI----RENKAQEIYIVMSGEMM 157 (295)
T ss_pred CCeEEEECCCCCCCCCCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECC-Ccccc----ccccCceEEEecCccHH
Confidence 4667776542111 122233 3454432 2589999999977643211 11000 001348888888872
Q ss_pred cHHHHH---HHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 139 TGQEAA---ALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 139 ~g~~~~---~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
.-..+. ..+... +..+.+.|+|+|+............+.+.++.++ ++..+.
T Consensus 158 Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~l--l~~Ip~ 214 (295)
T PRK13234 158 ALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKL--IHFVPR 214 (295)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCce--EEECCC
Confidence 222222 222332 2346788999997654444445566667778766 344443
No 39
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.66 E-value=2.3e-15 Score=145.71 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=96.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH------------hhhccCCc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI------------LGEQVGVP 72 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~------------~~~~~gv~ 72 (403)
++|+++|+|||||||+|.+||..|+++|+||++||+|++..... +-+.. .....|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~l~ 81 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNGIY 81 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCCcE
Confidence 57888899999999999999999999999999999999853221 11100 01123566
Q ss_pred eEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--H
Q 015657 73 VYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--G 140 (403)
Q Consensus 73 v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g 140 (403)
+++.+.... .... ..+.+..+...+||||||||++.+..+... .......++.+++++.+.. .
T Consensus 82 lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~-----~~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 82 CVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFA-----MPLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred EEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCcc-----ccccccccceEEEeccchHHHH
Confidence 666553211 1111 111111222247999999998865321100 0001112488888888732 2
Q ss_pred HH---HHHHHHHhh--hcCCeeEEEEccCCCCCc-hhHHHHHHHHhCCCeEEeeccCCc
Q 015657 141 QE---AAALVTTFN--IEIGITGAILTKLDGDSR-GGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 141 ~~---~~~~~~~~~--~~~~i~GvIlNk~D~~~~-~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
.. +.+.+..+. ....+.||+.|. ....+ ......+.+.++.++ ++..+..
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r~~~~~~~~~e~l~~~~g~~v--l~~Ip~~ 212 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYNG-RSVIDAPDIVEEFAKKIGTNV--IGKIPMS 212 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEec-cCCCchhHHHHHHHHHhCCcE--EEECCCC
Confidence 22 223333332 245667777553 22222 345566777788877 4555443
No 40
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.65 E-value=4.2e-15 Score=137.15 Aligned_cols=153 Identities=23% Similarity=0.298 Sum_probs=100.0
Q ss_pred cccccCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------H------------
Q 015657 7 ELVFAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------I------------ 64 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------~------------ 64 (403)
+|.+....+++|+|++. +|+||||++.+||..|++.|++|++||+|++.|.....+. .
T Consensus 9 ~l~~~~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i 88 (204)
T TIGR01007 9 NIQFSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAI 88 (204)
T ss_pred HHhhhcCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhc
Confidence 45555566888888855 9999999999999999999999999999998875422110 0
Q ss_pred -hhhccCCceEeCCCC-CCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 65 -LGEQVGVPVYTAGTE-VKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 65 -~~~~~gv~v~~~~~~-~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
.....++.+++.+.. ..+. ..+++.++.++ ..||+||||||+....... ..+.. .+|.+++|+++
T Consensus 89 ~~~~~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~-----~~~~~--~~D~vilV~~~ 160 (204)
T TIGR01007 89 CDTNIENLFVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDA-----AIIAR--ACDASILVTDA 160 (204)
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchH-----HHHHH--hCCeEEEEEEC
Confidence 001135556665432 2222 23466777774 7899999999984332111 11111 24899999988
Q ss_pred c--cHHHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 138 M--TGQEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 138 ~--~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
. ....+......+. ....+.|+|+||++..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 161 GEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 3 3344444433333 2457899999999854
No 41
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.65 E-value=3.6e-15 Score=143.94 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=98.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHHh------------hhccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVGV 71 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~~------------~~~~gv 71 (403)
++|+++|+|||||||+|.+||..|+++|++|++||+|++...+. +-+... ....++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l 80 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCCE
Confidence 46889999999999999999999999999999999998864331 111100 002255
Q ss_pred ceEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--c
Q 015657 72 PVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T 139 (403)
Q Consensus 72 ~v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~ 139 (403)
.+++.+.... .... +.+.+..+. ++||||||||+|.+..... ... + .....|.+++++.+. .
T Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~~-~~~---~-~~~aAD~viip~~p~~~s 154 (275)
T TIGR01287 81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGGF-AMP---I-REGKAQEIYIVTSGEMMA 154 (275)
T ss_pred EEEeCCCCCccCCCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecce-eec---c-ccccccEEEEEecchHHH
Confidence 5555432211 1111 122344443 5899999999876532111 000 0 001247888888772 2
Q ss_pred HHHH---HHHHHHhh--hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657 140 GQEA---AALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 140 g~~~---~~~~~~~~--~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
-..+ ...+..+. ....+.++|+|+............+.+.++.++ ++..+..
T Consensus 155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~~ 211 (275)
T TIGR01287 155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQL--IHFVPRS 211 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCchHHHHHHHHHHHhCCce--EEECCCC
Confidence 2222 22223332 245677888887543333444566667777765 4444443
No 42
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.65 E-value=5e-15 Score=142.52 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=96.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH--------------hhhcc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQV 69 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~--------------~~~~~ 69 (403)
.++|+|+|+|||||||+|.+||.+|+++|+||++||+|++...+. +-+.. .....
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~ 81 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYN 81 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCC
Confidence 478888899999999999999999999999999999999853321 11100 00114
Q ss_pred CCceEeCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--
Q 015657 70 GVPVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-- 139 (403)
Q Consensus 70 gv~v~~~~~~~~~-------~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-- 139 (403)
|+++++.+..... .......+..+ ..++||||||||+|.+..+. +... ...+|.+++++.+..
T Consensus 82 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~------l~~AD~viip~~~~~~s 154 (270)
T PRK13185 82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAP------LQYADYALIVTANDFDS 154 (270)
T ss_pred CcEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-ccch------hhhCcEEEEEecCchhh
Confidence 6677765443211 01111122221 13579999999988764321 1111 112478888887622
Q ss_pred H---HHHHHHHHH--hhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 140 G---QEAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 140 g---~~~~~~~~~--~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
- ......+.. .+..+.+.|+|+|+++. ...+..+.+.++.++
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~---~~~~~~~~~~~g~~v 201 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG---TDLIDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh---HHHHHHHHHHcCCCE
Confidence 1 222332222 24456678999999873 233456666777777
No 43
>PHA02518 ParA-like protein; Provisional
Probab=99.64 E-value=9.9e-15 Score=134.64 Aligned_cols=153 Identities=21% Similarity=0.199 Sum_probs=92.4
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
+|+++ .+|||||||+|.+||.+|+++|++|++||+|++++...+ .... .. +.++++.... ...+.+.+..+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~-~~-~~~~i~~~~~---~~~~~~~l~~~~- 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEAR-EE-GEPLIPVVRM---GKSIRADLPKVA- 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhc-cc-CCCCCchhhc---cHHHHHHHHHHh-
Confidence 56666 559999999999999999999999999999999876632 2111 11 1111211111 123445555553
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH---HHHHHHHH---hhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ---EAAALVTT---FNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~---~~~~~~~~---~~~~~~i~GvIlNk~D~~ 167 (403)
..||+|||||||.... . .. .+ ....|.+++++.+.. .. .....+.. ++......++|+|+++..
T Consensus 75 ~~~d~viiD~p~~~~~--~-~~---~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE--L-AR---AA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCccH--H-HH---HH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 6899999999998642 1 11 11 112478888887732 12 22222222 333556678999998654
Q ss_pred Cc-hhHHHHHHHHhCCCe
Q 015657 168 SR-GGAALSVKEVSGKPI 184 (403)
Q Consensus 168 ~~-~~~~~~~~~~~g~pi 184 (403)
.. ...+....+..+.|+
T Consensus 147 ~~~~~~~~~~l~~~~~~~ 164 (211)
T PHA02518 147 TQLYREARKALAGYGLPI 164 (211)
T ss_pred chHHHHHHHHHHHcCchh
Confidence 32 234444445556665
No 44
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.62 E-value=1.9e-14 Score=129.98 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceE--eCCCCCCH---------HHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY--TAGTEVKP---------SQI 85 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~--~~~~~~~~---------~~~ 85 (403)
+.+.+++||+||||+|.+||..| ++|++||+|+++|.....+. .....+..+. ........ ...
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLK-PEIEEEEDFIVGGKKAVIDPELCISCGLCGKL 76 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcC-CCccccccceecCCceEEchhhhccccchHHH
Confidence 45667889999999999999999 79999999999887643221 1111111111 00000000 111
Q ss_pred HHHHHHH----HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhhh-cCCeeE
Q 015657 86 AKQGLEE----AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFNI-EIGITG 158 (403)
Q Consensus 86 ~~~~l~~----~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~~-~~~i~G 158 (403)
.....+. .....||||||||||+... ... .. ....|.+++|+.+. ....+....+.+.. ..+ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~----~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~ 147 (179)
T cd03110 77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVI----AS--LTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VG 147 (179)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHH----HH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EE
Confidence 1111111 1137899999999998742 111 11 12347888888873 22333333333322 233 47
Q ss_pred EEEccCCCCCc-hhHHHHHHHHhCCCeEEeecc
Q 015657 159 AILTKLDGDSR-GGAALSVKEVSGKPIKLVGRG 190 (403)
Q Consensus 159 vIlNk~D~~~~-~~~~~~~~~~~g~pi~fig~g 190 (403)
+|+||+|.... ...+.+..+.+|.|+ ++..
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~v--l~~i 178 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPI--LGKI 178 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCe--EEeC
Confidence 99999997543 234556677788887 5543
No 45
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.62 E-value=1.1e-14 Score=139.90 Aligned_cols=164 Identities=23% Similarity=0.235 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----------HHHHHH--------------hhhccCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVGV 71 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----------~~~l~~--------------~~~~~gv 71 (403)
+|+++|+|||||||+|.+||.+|+++|+||++||+|++.... .+-+.. .....++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 577889999999999999999999999999999999875321 111100 0011356
Q ss_pred ceEeCCCCCCHH-------HHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657 72 PVYTAGTEVKPS-------QIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ 141 (403)
Q Consensus 72 ~v~~~~~~~~~~-------~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~ 141 (403)
++++++...... ......++.+ ...+||+|||||+|.+.... +... ...+|.+++++.+.. -.
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~~a------l~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FAAP------LNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-chhh------hhhcCEEEEEecCCcccHH
Confidence 677554322110 0001112221 13479999999998764321 1111 122488888887732 12
Q ss_pred H---HHHHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 142 E---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 142 ~---~~~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
. ....++.. +..+.+.|+|+|+++.. ..+..+.+.++.|+ ++..+.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~---~~i~~~~~~~~~~v--l~~Ip~ 205 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT---DLIDKFVEAVGMPV--LAVLPL 205 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH---HHHHHHHHhCCCCE--EEEecC
Confidence 2 22222222 34566789999999853 23455566677776 444444
No 46
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.62 E-value=1.1e-14 Score=139.94 Aligned_cols=158 Identities=22% Similarity=0.245 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----------HHHHHH--------------hhhccCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVGV 71 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----------~~~l~~--------------~~~~~gv 71 (403)
+|++.|+|||||||+|.+||.+|+++|+||++||+|++...+ .+-+.. .....++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV 81 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence 467779999999999999999999999999999999985322 011100 0011356
Q ss_pred ceEeCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657 72 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ 141 (403)
Q Consensus 72 ~v~~~~~~~~~-------~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~ 141 (403)
++++.+..... .......+..+ ...+||||||||+|.+...... . ....+|.+++++.+.. ..
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~~-~------~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGGFA-T------PLQYADYALVVAANDFDALF 154 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCccc-c------chhhcCEEEEEecCchhHHH
Confidence 66655443211 00011112221 1357999999998876421110 0 0122477777776621 12
Q ss_pred HHHHH---HHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 142 EAAAL---VTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 142 ~~~~~---~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
.+... +... +..+.+.|+|+|+++.. .....+.+.++.|+
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---~~~~~~~~~~~~~v 199 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT---DLIERFNERVGMPV 199 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH---HHHHHHHHHcCCCE
Confidence 22222 2222 34567789999999865 34455566678777
No 47
>CHL00175 minD septum-site determining protein; Validated
Probab=99.62 E-value=1.7e-14 Score=139.63 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=102.7
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-----------Hh-------------hhc
Q 015657 14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------IL-------------GEQ 68 (403)
Q Consensus 14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-----------~~-------------~~~ 68 (403)
..++|+|+ |+||+||||+|.+||.+|++.|++|++||+|++.+.....+. .+ ...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 35677776 579999999999999999999999999999997533211100 00 001
Q ss_pred cCCceEeCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHH
Q 015657 69 VGVPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQE 142 (403)
Q Consensus 69 ~gv~v~~~~~~~~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~ 142 (403)
.++.+++.+.... ....+.+.++.++...||+||||||+.+.. .....+ ...+.+++|+++. ....
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l------~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAI------APAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHH------HhcCeeEEEcCCChHHHHH
Confidence 2344444432211 122356667777533899999999998742 111111 1247888888873 2234
Q ss_pred HHHHHHHhhh-cCCeeEEEEccCCCCCch----hHHHHHHHHhCCCeEEeeccCCc
Q 015657 143 AAALVTTFNI-EIGITGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 143 ~~~~~~~~~~-~~~i~GvIlNk~D~~~~~----~~~~~~~~~~g~pi~fig~ge~v 193 (403)
+....+.+.. .....++|+|+++..... -....+.+.++.|+ ++..+..
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~Ip~d 219 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPL--LGAIPED 219 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCe--EEEccCC
Confidence 4444433332 233467999999854211 12345667788877 5555443
No 48
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.61 E-value=1.9e-14 Score=136.13 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=93.7
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHH------H--HhhhccCCce
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQL------V--ILGEQVGVPV 73 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l------~--~~~~~~gv~v 73 (403)
++|+|+ ++||+||||+|.+||..|+++|+||++||+|++.+... +.+ . ......++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 456665 57999999999999999999999999999999875221 000 0 0011235556
Q ss_pred EeCCCCCC---------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-H-HH
Q 015657 74 YTAGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE 142 (403)
Q Consensus 74 ~~~~~~~~---------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g-~~ 142 (403)
++.+.... ....+++.+..+....||+|||||||.+.. ... .+ ....|.+++++.+.. . ..
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~---~~~---~~--l~~ad~vii~~~~~~~s~~~ 153 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP---ITR---QA--LAAADLVLVVVNADAACYAT 153 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH---HHH---HH--HHhCCeEEEEeCCCHHHHHH
Confidence 65433211 123345666666444469999999997642 111 11 122478888887732 1 22
Q ss_pred HHHHHHHhhh---cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCe
Q 015657 143 AAALVTTFNI---EIGITGAILTKLDGDSR--GGAALSVKEVSGKPI 184 (403)
Q Consensus 143 ~~~~~~~~~~---~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi 184 (403)
+.+.+..+.. .....++|+|+++.... ......+.+.++.++
T Consensus 154 ~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~~~~~~~~~ 200 (246)
T TIGR03371 154 LHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVLRQTLGSRL 200 (246)
T ss_pred HHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHHHHHhcccc
Confidence 2212222221 11236799999986532 122233445567664
No 49
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.61 E-value=1.1e-14 Score=134.36 Aligned_cols=167 Identities=22% Similarity=0.264 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHH----------------HHh--------------
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL----------------VIL-------------- 65 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l----------------~~~-------------- 65 (403)
.|+|+|+|||||||+|+.|+..|.++ |++|++||+|+ .+....++ +..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 58999999999999999978877766 59999999997 32221111 100
Q ss_pred -------------hhccCCceEeCCC--------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCc-cccHHhHHHHHHHh
Q 015657 66 -------------GEQVGVPVYTAGT--------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL-QIDKAMMDELKDVK 123 (403)
Q Consensus 66 -------------~~~~gv~v~~~~~--------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l-~~d~~l~~el~~i~ 123 (403)
.+..++.+...+. ......++++.++++..+.||+|||||-.++ |+......
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~------ 154 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE------ 154 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccccc------
Confidence 0111122222221 1222345688889988777999999996554 34333332
Q ss_pred hhcCCceEEEEEeccc-HHHHHHHHHHhhhc--CCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC
Q 015657 124 RVLNPTEVLLVVDAMT-GQEAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE 197 (403)
Q Consensus 124 ~~~~~~~vllVvda~~-g~~~~~~~~~~~~~--~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~ 197 (403)
..|-+++|+|++. +-.....++.+... ++..++|+||++.. ...+.......+.++ +|..|..+.+.
T Consensus 155 ---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~v--lg~iP~d~~v~ 224 (255)
T COG3640 155 ---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEV--LGVIPYDPEVV 224 (255)
T ss_pred ---CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeE--EEEccCCHHHH
Confidence 2488899999943 22333333333333 45678999999976 444555566677777 77776655433
No 50
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.61 E-value=2.9e-14 Score=147.01 Aligned_cols=215 Identities=23% Similarity=0.316 Sum_probs=139.5
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
+.++|+|. +||||||+++.|+++|+++|++|..+.+.+.. .+.. .+....+.+....+.+....+.+++.+..+.
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~---~d~~-~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~ 79 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY---IDPA-YHTAATGRPSRNLDSWMMGEELVRALFARAA 79 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCc---ccHH-HHHHHhCCCcccCCceeCCHHHHHHHHHHhc
Confidence 45788887 99999999999999999999999999886443 2221 1122334444444433334456677777763
Q ss_pred hCCCcEEEEeCCCCccccHH---hHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHH---HHhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~---l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+||++||+++|++..... -.....++++.+. .++++|+|+.. +......+ ..+...+++.|+|+|++...
T Consensus 80 -~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~~~ 157 (451)
T PRK01077 80 -QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVGSE 157 (451)
T ss_pred -ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCh
Confidence 6899999999988754211 0122345666666 79999999854 33333333 33455788999999999765
Q ss_pred CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657 168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF 247 (403)
Q Consensus 168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl 247 (403)
.+........+.++.|+ +|..|..+.+.. | +|+||+....+. +...+.+ +....+++..++++.+
T Consensus 158 ~~~~~l~~~l~~~gipv--LG~IP~~~~l~~--p----~r~lgl~~~~e~-~~~~~~~------~~~~~~~~~~~~~~~~ 222 (451)
T PRK01077 158 RHYQLLREALERCGIPV--LGALPRDAALAL--P----ERHLGLVQASEH-GDLEARL------DALADLVEEHVDLDAL 222 (451)
T ss_pred hHHHHHHHHHHhcCCCE--EEEeeCCcccCC--C----ccccCCCCcccc-ccHHHHH------HHHHHHHHHcCCHHHH
Confidence 55444455555678888 888888777654 5 889999765542 1122111 2233344667888776
Q ss_pred HHHH
Q 015657 248 LKQT 251 (403)
Q Consensus 248 ~~ql 251 (403)
++..
T Consensus 223 ~~~~ 226 (451)
T PRK01077 223 LALA 226 (451)
T ss_pred HHHH
Confidence 5543
No 51
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.60 E-value=2.6e-14 Score=137.88 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=97.5
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH------------------H---hhhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV------------------I---LGEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~------------------~---~~~~~ 69 (403)
.+++++|+|++. +|+||||++.+||..|++.|++|++||+|+.+|.....+. . .....
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 456788888855 9999999999999999999999999999988766422110 0 01123
Q ss_pred CCceEeCCCCC-CHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccc-cHHhHHHHHHHhhhcCCceEEEEEec--ccH
Q 015657 70 GVPVYTAGTEV-KPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA--MTG 140 (403)
Q Consensus 70 gv~v~~~~~~~-~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~-d~~l~~el~~i~~~~~~~~vllVvda--~~g 140 (403)
++.+++.+... .+.+ .+...+..++ ..|||||||||+.... +...+ .. ..|.+++|+.+ +..
T Consensus 180 ~l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~------~~--~~d~vilV~~~~~t~~ 250 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV------AT--RARGTLIVSRVNETRL 250 (274)
T ss_pred CEEEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHH------HH--hCCeEEEEEECCCCCH
Confidence 56666665432 2322 3466677774 7899999999997643 22221 11 24889999987 344
Q ss_pred HHHHHHHHHhh-hcCCeeEEEEcc
Q 015657 141 QEAAALVTTFN-IEIGITGAILTK 163 (403)
Q Consensus 141 ~~~~~~~~~~~-~~~~i~GvIlNk 163 (403)
.++...++.+. ...++.|+|+|+
T Consensus 251 ~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 251 HELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 45555555443 367889999996
No 52
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.60 E-value=6.6e-14 Score=131.97 Aligned_cols=141 Identities=17% Similarity=0.103 Sum_probs=83.6
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
++|++. .+|||||||++.+||.+|+++|++|++||+|++++...+ ..........+.............++..++.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KENALRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH-HHhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 466666 559999999999999999999999999999999986532 211111110111000011123345666666665
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHH---HH----hhhcCCeeEEEEccCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALV---TT----FNIEIGITGAILTKLD 165 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~---~~----~~~~~~i~GvIlNk~D 165 (403)
..+||||||||||.... ... .. ....|-+++.+.+.. ...+.+.+ .. .+..++. .+++|+++
T Consensus 81 ~~~yD~iiID~pp~~~~--~~~----~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~~~~ 151 (231)
T PRK13849 81 LQGFDYALADTHGGSSE--LNN----TI--IASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQRVP 151 (231)
T ss_pred hCCCCEEEEeCCCCccH--HHH----HH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEecc
Confidence 46899999999998742 111 11 112366666666522 12222222 21 2333433 49999997
Q ss_pred C
Q 015657 166 G 166 (403)
Q Consensus 166 ~ 166 (403)
.
T Consensus 152 ~ 152 (231)
T PRK13849 152 V 152 (231)
T ss_pred c
Confidence 3
No 53
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.60 E-value=1.6e-14 Score=138.53 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=108.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHHh----------hhccCCce
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVIL----------GEQVGVPV 73 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~~----------~~~~gv~v 73 (403)
+++|+++|+||+||||+|.+||.+|+++| ||++||+|++...+.. .+... ....++.+
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGILC 80 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeEE
Confidence 46788889999999999999999999999 9999999998633210 01000 00123445
Q ss_pred EeCCCCC------CHHH----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHH
Q 015657 74 YTAGTEV------KPSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQ 141 (403)
Q Consensus 74 ~~~~~~~------~~~~----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~ 141 (403)
++.+... .... .+.+.+..+ .++||||||||++.+..+. +...+. ....|.+++++.+. ...
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~-~~~~~~----~~aaD~vlip~~p~~~si~ 154 (264)
T PRK13231 81 VESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGG-FSVPLR----EDYADEVYIVTSGEYMSLY 154 (264)
T ss_pred EEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEcc-cccccc----ccccceeEEEecCchhHHH
Confidence 4443211 0110 123344444 3689999999988663211 100000 01347888888772 222
Q ss_pred HHHHHHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCC--chhhhhhhcCCccHHHHH
Q 015657 142 EAAALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFY--PDRMAGRILGMGDVLSFV 218 (403)
Q Consensus 142 ~~~~~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~--~~~~~~r~lG~~dv~~l~ 218 (403)
.+....+.+.. ...+.++|.|+.+..........+.+.++.++ ++..+....+.... ...+.+...+......|.
T Consensus 155 ~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v--l~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~~~~ 232 (264)
T PRK13231 155 AANNIARGIKKLKGKLGGIICNCRGIDNEVEIVSEFASRIGSRI--IGVIPRSNLVQESELDAKTVVETFPESEQASVYR 232 (264)
T ss_pred HHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHHHHHHHhCCCe--EEeCCCCHHHHHHHHcCCceeEeCCCChHHHHHH
Confidence 22222222221 12356788888775544455566777778776 34444332222111 122323333444344555
Q ss_pred HHHHHHh
Q 015657 219 EKAQEVM 225 (403)
Q Consensus 219 e~~~e~~ 225 (403)
+.+.+.+
T Consensus 233 ~la~el~ 239 (264)
T PRK13231 233 KLANNIM 239 (264)
T ss_pred HHHHHHH
Confidence 5555544
No 54
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.60 E-value=8.8e-15 Score=133.25 Aligned_cols=173 Identities=21% Similarity=0.316 Sum_probs=108.7
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC-----------------------hhhHHHHH-HhhhccC
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----------------------PAAIDQLV-ILGEQVG 70 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r-----------------------p~~~~~l~-~~~~~~g 70 (403)
++|+++ |+||+||||++++|+..|+++|+||++||+|+-- .....|.. ..-...+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 456555 9999999999999999999999999999999521 11112211 1112223
Q ss_pred CceEeCCC----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHHHHH
Q 015657 71 VPVYTAGT----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEAA 144 (403)
Q Consensus 71 v~v~~~~~----~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~~~~ 144 (403)
+.++++.. ..-..+.....+++++..+|||||||||.++..... .....++.+++|+.+ ++-.++-
T Consensus 83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~--------~A~~~Ad~AiVVtnPEvSsVRDsD 154 (272)
T COG2894 83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFK--------NAVYFADEAIVVTNPEVSSVRDSD 154 (272)
T ss_pred eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHH--------hhhhccceEEEEcCCCccccccch
Confidence 44444332 122234566777888767999999999998853211 112234888888887 3444444
Q ss_pred HHHH---Hhh--hcCC---eeEEEEccCCCC--Cchh--HHHHHHHHhCCCeEEeeccCCcCCCCC
Q 015657 145 ALVT---TFN--IEIG---ITGAILTKLDGD--SRGG--AALSVKEVSGKPIKLVGRGERMEDLEP 198 (403)
Q Consensus 145 ~~~~---~~~--~~~~---i~GvIlNk~D~~--~~~~--~~~~~~~~~g~pi~fig~ge~v~~l~~ 198 (403)
+++- ... ...+ ...+++|+++.. .++. .+..+.+.+..|+ +|..|..+++-.
T Consensus 155 RiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l--iGiiPed~~Vi~ 218 (272)
T COG2894 155 RIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL--IGVIPEDQDVLR 218 (272)
T ss_pred hheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce--EEeecCchhhhe
Confidence 4432 111 1111 256999999854 2332 2356777888888 998888766544
No 55
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.59 E-value=3.7e-14 Score=136.31 Aligned_cols=147 Identities=25% Similarity=0.276 Sum_probs=94.4
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh---------h-----------ccCCc
Q 015657 14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------E-----------QVGVP 72 (403)
Q Consensus 14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~---------~-----------~~gv~ 72 (403)
..++|+++ |++|+||||++.+||..+++.|+||+++|+|.++|....-+.... . ..++.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ls 135 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLS 135 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEE
Confidence 34555554 889999999999999999999999999999999987654332100 0 00111
Q ss_pred eEeCCC-CCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccH-HHHH
Q 015657 73 VYTAGT-EVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QEAA 144 (403)
Q Consensus 73 v~~~~~-~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g-~~~~ 144 (403)
+..... ...+. ..+++.+..++|..|||||||||+....... .+... .++.+++|+.. .+. .++.
T Consensus 136 i~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~------~i~~~-~~~g~viVt~p~~~~~~~v~ 208 (265)
T COG0489 136 ILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADA------TVLQR-IPDGVVIVTTPGKTALEDVK 208 (265)
T ss_pred EEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHH------HHHhc-cCCeEEEEeCCccchHHHHH
Confidence 222211 12222 2357788888877799999999998764211 11111 24677888777 233 3444
Q ss_pred HHHHHh-hhcCCeeEEEEccCCCC
Q 015657 145 ALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 145 ~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
+....+ ....++.|||.|+.+-.
T Consensus 209 ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 209 KAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred HHHHHHHhcCCceEEEEecCccCc
Confidence 344333 34667999999988743
No 56
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.59 E-value=5.4e-14 Score=130.33 Aligned_cols=141 Identities=22% Similarity=0.355 Sum_probs=92.7
Q ss_pred CCCEEEEEEc-CCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHH------------HH-------H---hhhc
Q 015657 13 SRPTVILLAG-LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQ------------LV-------I---LGEQ 68 (403)
Q Consensus 13 ~~~~iI~v~G-~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~------------l~-------~---~~~~ 68 (403)
...++|+|++ ++|+||||++.+||.+|++ .|++|++||+|++.+..... +. . ....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 3467888885 5999999999999999996 69999999999987543211 10 0 0012
Q ss_pred cCCceEeCCCCCC-HH-----HHHHHHHHHHHhCCC--cEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--c
Q 015657 69 VGVPVYTAGTEVK-PS-----QIAKQGLEEAKKKNV--DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--M 138 (403)
Q Consensus 69 ~gv~v~~~~~~~~-~~-----~~~~~~l~~~~~~~~--D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~ 138 (403)
.++.+++.+.... +. ..+++.+..++ ..| ||||||||+...... ...+.. .+|.+++|+.+ .
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~-----~~~l~~--~aD~viiV~~~~~~ 184 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSE-----ARALAR--LVGQIVLVVEEGRT 184 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhH-----HHHHHH--hCCEEEEEEECCCC
Confidence 3455665544322 21 23466777775 456 999999999885321 111211 24889999988 3
Q ss_pred cHHHHHHHHHHhhhcCCeeEEEEc
Q 015657 139 TGQEAAALVTTFNIEIGITGAILT 162 (403)
Q Consensus 139 ~g~~~~~~~~~~~~~~~i~GvIlN 162 (403)
....+...+..+. ..++.|+|+|
T Consensus 185 ~~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 185 TQEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEeC
Confidence 3345555555555 7889999998
No 57
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.59 E-value=1.9e-14 Score=130.66 Aligned_cols=143 Identities=24% Similarity=0.356 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---hhhc--------cCCceEe--CCCCCCHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGEQ--------VGVPVYT--AGTEVKPS 83 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---~~~~--------~gv~v~~--~~~~~~~~ 83 (403)
|.+.+++||+||||+|.+||.+|+++|++|+++|+|++.+........ ..+. ..+.... .+......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDP 80 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHH
Confidence 345667799999999999999999999999999999998776322200 0000 0000000 00000233
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHH---HHHhhhcCCeeE
Q 015657 84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAAL---VTTFNIEIGITG 158 (403)
Q Consensus 84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~---~~~~~~~~~i~G 158 (403)
..+++.++.+....||+||||||+.+... ...+ ...++.+++++++.. ...+... ++.+....++.+
T Consensus 81 ~~l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 152 (195)
T PF01656_consen 81 ELLREILESLIKSDYDYIIIDTPPGLSDP------VRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIG 152 (195)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECSSSSHH------HHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEE
T ss_pred HHHHHHHHHhhhccccceeecccccccHH------HHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEE
Confidence 45677777765556999999999988642 1111 123588888888732 2233333 333333356789
Q ss_pred EEEccCCCC
Q 015657 159 AILTKLDGD 167 (403)
Q Consensus 159 vIlNk~D~~ 167 (403)
+|+||++..
T Consensus 153 vv~N~v~~~ 161 (195)
T PF01656_consen 153 VVINRVDPG 161 (195)
T ss_dssp EEEEEETSC
T ss_pred EEEeeeCCC
Confidence 999999765
No 58
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.57 E-value=4.4e-14 Score=126.67 Aligned_cols=140 Identities=21% Similarity=0.329 Sum_probs=87.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
+.++.++||+||||++.+||.+|+++|++|++||+|++.+.....+. .... . ...-. +.+ .
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~-~~~~--~-------~~~~~-------~~~--~ 62 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILG-LENR--V-------VYTLH-------DVL--A 62 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhcc-cccc--C-------Ccchh-------hcc--c
Confidence 34455779999999999999999999999999999998665422210 0000 0 00000 111 1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhhh-cCCeeEEEEccCCCCCch--h
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFNI-EIGITGAILTKLDGDSRG--G 171 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~~-~~~i~GvIlNk~D~~~~~--~ 171 (403)
+ |+|||||||..... ... . ....+.+++|+++. ....+...++.+.. .....++|+|+++..... .
T Consensus 63 ~-d~viiD~p~~~~~~--~~~----~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 133 (179)
T cd02036 63 G-DYILIDSPAGIERG--FIT----A--IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD 133 (179)
T ss_pred C-CEEEEECCCCCcHH--HHH----H--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence 1 99999999986531 111 1 12347888888873 22333333333322 456788999999876432 2
Q ss_pred HHHHHHHHhCCCe
Q 015657 172 AALSVKEVSGKPI 184 (403)
Q Consensus 172 ~~~~~~~~~g~pi 184 (403)
....+.+.++.|+
T Consensus 134 ~~~~~~~~~~~~v 146 (179)
T cd02036 134 MVEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHHhCCCE
Confidence 2345666788887
No 59
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.57 E-value=1.6e-14 Score=142.37 Aligned_cols=169 Identities=21% Similarity=0.260 Sum_probs=102.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-----------H----hhh----------
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------I----LGE---------- 67 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-----------~----~~~---------- 67 (403)
++.++|+++|+||+||||++.+||.+|+++|++|++||+|++++.....+. . ..+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~ 108 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFK 108 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEE
Confidence 467999999999999999999999999999999999999998754321110 0 000
Q ss_pred ccCCceEeCCCCC---CH----HHHHHHHHHHH---HhCCCcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEE
Q 015657 68 QVGVPVYTAGTEV---KP----SQIAKQGLEEA---KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLV 134 (403)
Q Consensus 68 ~~gv~v~~~~~~~---~~----~~~~~~~l~~~---~~~~~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllV 134 (403)
..|+.+...+... .+ .....+.++.+ .| +||||||||+|.... ...+.. .+ .+.+++|
T Consensus 109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~-------~~-ad~VIVV 179 (329)
T cd02033 109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIAR-------DM-AQKVIVV 179 (329)
T ss_pred eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhh-------cC-CceEEEe
Confidence 1122322222110 11 11122344443 34 799999999887642 111111 11 3566777
Q ss_pred Eecc--cHHHHHH------HHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 135 VDAM--TGQEAAA------LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 135 vda~--~g~~~~~------~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
+... ....+.+ .++......++.|+|+||.|+.. .+..+.+.++.|+ ++..|..++
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~---~ie~~ae~lgi~v--Lg~IP~D~~ 243 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG---EAQAFAAHAGIPI--LAAIPADEE 243 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc---hHHHHHHHhCCCE--EEECCCCHH
Confidence 6652 1222222 22223335678999999998632 3667778889998 777765443
No 60
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.56 E-value=1.2e-13 Score=140.68 Aligned_cols=205 Identities=21% Similarity=0.248 Sum_probs=140.4
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
.++|+|. +|+||||+++.|+++|.++|.+|..+.+- |+++|.. .+....+.++...+.+....+.+++.+..
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G---pd~iD~~-~~~~~~g~~~~nld~~~~~~~~i~~~~~~--- 75 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG---PDFIDPS-HHEAVAGRPSRTLDPWLSGEDGMRRNYYR--- 75 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC---CCCCCHH-HHHHHhCCCcccCChhhCCHHHHHHHHHh---
Confidence 4788888 99999999999999999999999877653 4444433 23444556666666665555555554432
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHH---HHhhh----cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV---TTFNI----EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~---~~~~~----~~~i~GvIlNk~D~~ 167 (403)
..+|++||+++|++.... .....++.+.+. .++++|+|+..+ .+....+ ..|.. .+++.|||+|++.+.
T Consensus 76 ~~~d~~vIEG~gGl~dg~--~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~ 152 (433)
T PRK13896 76 GEGDICVVEGVMGLYDGD--VSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGG 152 (433)
T ss_pred hcCCEEEEECCCccccCC--CCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcH
Confidence 348999999999986532 123466677776 789999999555 3344333 23444 689999999999887
Q ss_pred CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657 168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF 247 (403)
Q Consensus 168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl 247 (403)
.+...+.+..+. ++|+ +|..++.+++.. | +||||+....+. +...+.+ .+ .+..+|++.+
T Consensus 153 ~h~~~l~~~~~~-~i~v--lG~lP~~~~~~~--~----~RHLGLv~~~e~-~~~~~~~---------~~-~~~~~d~~~l 212 (433)
T PRK13896 153 RHADGIRDALPD-ELTY--FGRIPPRDDLEI--P----DRHLGLHMGSEA-PLDDDAL---------DE-AAEHIDAERL 212 (433)
T ss_pred HHHHHHHHhhhh-cCce--eEecccCCCCCC--C----CCCcCCCcchhh-ccHHHHH---------HH-HHHhCCHHHH
Confidence 666665555544 6777 999999888665 6 999999765542 1111111 11 3456889888
Q ss_pred HHHH
Q 015657 248 LKQT 251 (403)
Q Consensus 248 ~~ql 251 (403)
++..
T Consensus 213 ~~~a 216 (433)
T PRK13896 213 AAVA 216 (433)
T ss_pred HHHh
Confidence 7765
No 61
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.56 E-value=4e-14 Score=143.97 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=96.8
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-------------HHHH-h-------------
Q 015657 14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------------QLVI-L------------- 65 (403)
Q Consensus 14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-------------~l~~-~------------- 65 (403)
+.++|+|+ .+|||||||+|.+||.+|+.+|+||++||+|++...... .+.. +
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i 199 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVI 199 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHhe
Confidence 34778777 569999999999999999999999999999998643210 0000 0
Q ss_pred --hhccCCceEeCCCCCCH-------------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657 66 --GEQVGVPVYTAGTEVKP-------------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124 (403)
Q Consensus 66 --~~~~gv~v~~~~~~~~~-------------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~ 124 (403)
....|+++++.+..... ...++++++.+. ++||||||||||.+.. ... ..
T Consensus 200 ~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~--~t~------~a 270 (405)
T PRK13869 200 RPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGF--LTL------SG 270 (405)
T ss_pred eccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhH--HHH------HH
Confidence 01124555554421110 123556667764 6899999999999853 111 11
Q ss_pred hcCCceEEEEEecccH-----HHHHH----HH---HHhhhc--CCeeEEEEccCCCCCc--hhHHHHHHHHhCCCe
Q 015657 125 VLNPTEVLLVVDAMTG-----QEAAA----LV---TTFNIE--IGITGAILTKLDGDSR--GGAALSVKEVSGKPI 184 (403)
Q Consensus 125 ~~~~~~vllVvda~~g-----~~~~~----~~---~~~~~~--~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi 184 (403)
...++.+++++.+..- ..... .. ...+.. +.+.+|++|++|.... ......+.+.++.++
T Consensus 271 l~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~~~~~l~~~~~~~v 346 (405)
T PRK13869 271 LCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHV 346 (405)
T ss_pred HHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHHHHHHHHHHhhhhh
Confidence 2224777777766221 12221 11 121222 3467899999996543 234455666666544
No 62
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.55 E-value=1.7e-13 Score=138.44 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=97.0
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHH----------------HHHHh---------
Q 015657 13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID----------------QLVIL--------- 65 (403)
Q Consensus 13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~----------------~l~~~--------- 65 (403)
.+++||+|+ .+|||||||+|.+||.+|+.+|+||++||+ |+|...+.. .+...
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i 183 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI 183 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence 446888787 559999999999999999999999999996 997643210 00000
Q ss_pred --hhccCCceEeCCCCC------------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhh
Q 015657 66 --GEQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125 (403)
Q Consensus 66 --~~~~gv~v~~~~~~~------------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~ 125 (403)
....|+++++.+... .+...++++++.+. ++||||||||||.+.. .... . .
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~--lt~n---A---L 254 (387)
T PHA02519 184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGT--GTIN---V---V 254 (387)
T ss_pred ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccH--HHHH---H---H
Confidence 011355566554211 12334566777774 7899999999999853 1111 1 1
Q ss_pred cCCceEEEEEecccH-----HHHHHHH----HHhhh---cCCeeEEEEccCCCCC--chh-HHHHHHHHhCCCe
Q 015657 126 LNPTEVLLVVDAMTG-----QEAAALV----TTFNI---EIGITGAILTKLDGDS--RGG-AALSVKEVSGKPI 184 (403)
Q Consensus 126 ~~~~~vllVvda~~g-----~~~~~~~----~~~~~---~~~i~GvIlNk~D~~~--~~~-~~~~~~~~~g~pi 184 (403)
..++.+++++.+..- ......+ ..+.. ... ..+++|++|... ... ....+.+.+|-.+
T Consensus 255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~i~~~l~~~~g~~v 327 (387)
T PHA02519 255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPV-VRLLLTKYSLTVGNQSRWMEEQIRNTWGSMV 327 (387)
T ss_pred HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCC-eEEEEeeECCCCchHHHHHHHHHHHHhcccc
Confidence 223677777765211 1122222 11111 112 338999999763 223 3356777777655
No 63
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.55 E-value=1.1e-13 Score=150.63 Aligned_cols=149 Identities=26% Similarity=0.352 Sum_probs=104.3
Q ss_pred cCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhc
Q 015657 11 AKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQ 68 (403)
Q Consensus 11 ~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~ 68 (403)
.+.++++|+|++. +|+||||+|.+||.+|+..|+||++||+|+++|.....+. .....
T Consensus 527 ~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~ 606 (726)
T PRK09841 527 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 606 (726)
T ss_pred cCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCC
Confidence 3457799999988 9999999999999999999999999999999876533210 00112
Q ss_pred cCCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccH-HhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657 69 VGVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTEVLLVVDA--MT 139 (403)
Q Consensus 69 ~gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~-~l~~el~~i~~~~~~~~vllVvda--~~ 139 (403)
.++++++.+. ...|.+. +.+.+..++ ..||+|||||||.+...+ ..+.. .+|.+++|+.+ +.
T Consensus 607 ~~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~--------~ad~~llVvr~~~t~ 677 (726)
T PRK09841 607 GGFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR--------SVGTSLLVARFGLNT 677 (726)
T ss_pred CCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH--------hCCeEEEEEeCCCCC
Confidence 3566776654 2345443 466677775 689999999999886532 22221 24888999887 33
Q ss_pred HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 140 GQEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 140 g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
...+...++.+. ....+.|+|+|+++...
T Consensus 678 ~~~~~~~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 678 AKEVSLSMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeCcccCc
Confidence 345555555443 45678999999998544
No 64
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.55 E-value=1.5e-13 Score=132.10 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=100.6
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH--------------H---------H-hhhccC
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL--------------V---------I-LGEQVG 70 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l--------------~---------~-~~~~~g 70 (403)
++|+|+ ++||+||||+|++||.+|+++|++|++||+|++.+.....+ . . .....+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 567776 56999999999999999999999999999999743321100 0 0 001235
Q ss_pred CceEeCCCCCCH----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657 71 VPVYTAGTEVKP----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA 144 (403)
Q Consensus 71 v~v~~~~~~~~~----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~ 144 (403)
+.+++.+..... .....+.++.++...|||||||||+++... .... ....|.+++|+++.. ...+.
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~--~~~~------l~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALMA------LYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH--HHHH------HHhCCeEEEEcCCCchHHHhHH
Confidence 555555432211 112356666665457999999999988531 1111 123488899988832 22333
Q ss_pred HHHHHhh--------hcCCe-eEEEEccCCCCCch----hHHHHHHHHhCCCeEEeeccCC
Q 015657 145 ALVTTFN--------IEIGI-TGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 145 ~~~~~~~--------~~~~i-~GvIlNk~D~~~~~----~~~~~~~~~~g~pi~fig~ge~ 192 (403)
.....+. ...++ .++|+|+++..... .....+.+.++.++ ++..+.
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip~ 213 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE 213 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcE--EEEecC
Confidence 3332221 11122 47999999865321 13455677788876 455444
No 65
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.55 E-value=6.9e-14 Score=136.59 Aligned_cols=168 Identities=19% Similarity=0.238 Sum_probs=95.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHHhhh----ccC---Cce----
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVILGE----QVG---VPV---- 73 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~~~~----~~g---v~v---- 73 (403)
++|+|+|+||+||||+|.+||.+|+++|+||++||+|++.+... .++..... ... +..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 46788899999999999999999999999999999998763321 11110000 000 000
Q ss_pred ---------EeCCCCC-C-----HH-HHHHHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657 74 ---------YTAGTEV-K-----PS-QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 135 (403)
Q Consensus 74 ---------~~~~~~~-~-----~~-~~~~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv 135 (403)
...+... . +. ......++.+. ..+||||||||++.+...... ..+. . ..++.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~-~~~a---~-~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA-TPLA---R-SLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccc-cchh---h-hhCCeEEEEe
Confidence 0000000 0 00 11134444432 247999999998754211000 0000 0 1247888888
Q ss_pred ecc--cH---HHHHHHHHHhh---hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657 136 DAM--TG---QEAAALVTTFN---IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 136 da~--~g---~~~~~~~~~~~---~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
.+. .- ..+...+..+. ..+++.|+|+|+++.. +....+.+.++.|+ ++..|..
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~---~~~~~~~~~~~i~v--Lg~IP~d 216 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS---GEAQAFAREVGIPV--LAAIPAD 216 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc---cHHHHHHHHcCCCe--EEECCCC
Confidence 762 21 22333333332 2467899999999863 24466677889988 7766543
No 66
>PRK10037 cell division protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=132.02 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=83.2
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHH--------HhhhccCCce
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV--------ILGEQVGVPV 73 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~--------~~~~~~gv~v 73 (403)
++|+++ .+||+||||+|.+||.+|+++|+||++||+|++..... +.+. ......|+++
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 81 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL 81 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence 356666 66999999999999999999999999999999863221 0000 0011235566
Q ss_pred EeCCCCCCHH------------HHHHHHHHHHHh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH
Q 015657 74 YTAGTEVKPS------------QIAKQGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 140 (403)
Q Consensus 74 ~~~~~~~~~~------------~~~~~~l~~~~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g 140 (403)
++.+. .... ..+.+.+..++. ..||||||||||.... .... . ...+|.+++++.+...
T Consensus 82 ip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~--~~~~----a--l~aaD~vlvpv~~~~~ 152 (250)
T PRK10037 82 LPFGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP--LTRQ----L--LSLCDHSLAIVNVDAN 152 (250)
T ss_pred EcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH--HHHH----H--HHhCCEEEEEcCcCHH
Confidence 66542 2111 123455666631 5899999999998742 1111 1 1224888888877432
Q ss_pred HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 141 QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 141 ~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
...+..+... .. -..+++|+++.
T Consensus 153 -~~i~~~~~~~-~~-~~~i~~n~~~~ 175 (250)
T PRK10037 153 -CHIRLHQQAL-PA-GAHILINDLRI 175 (250)
T ss_pred -HHHhhhcccc-CC-CeEEEEecCCc
Confidence 2222222111 11 23478899874
No 67
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.54 E-value=2.6e-13 Score=139.80 Aligned_cols=213 Identities=22% Similarity=0.350 Sum_probs=136.2
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
++|+|. +||||||+++.|+++|+++|++|..+.+- |+.++.. .+....+.+....+.+....+.+++.+..+ ..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d~~D~~-~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~-~~ 76 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PDYIDPM-FHTQATGRPSRNLDSFFMSEAQIQECFHRH-SK 76 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CCCCCHH-HHHHHhCCchhhCCcccCCHHHHHHHHHHh-cc
Confidence 678888 99999999999999999999999977652 3323322 122223333333333333456667777776 36
Q ss_pred CCcEEEEeCCCCccccH---HhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHH---HHhhhcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDK---AMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~---~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
++|++||+++|++.... .-.....++++.++ .++++|+++.. ...+..+. ..+...+.+.|+|+|+++.+.+
T Consensus 77 ~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~ 155 (449)
T TIGR00379 77 GTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGSERH 155 (449)
T ss_pred cCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHH
Confidence 89999999998775310 00122345666666 79999999854 33334433 2345678899999999987544
Q ss_pred hhHHH-HHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHHH
Q 015657 170 GGAAL-SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFL 248 (403)
Q Consensus 170 ~~~~~-~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl~ 248 (403)
..... .+.+.++.|+ +|..+..+++.. | +||||+..+.+. +...+.+ +......+..+|++.++
T Consensus 156 ~~~~~~~i~~~~gipv--LG~IP~~~~l~~--p----~rhLgLv~~~e~-~~~~~~~------~~~~~~~~~~~d~~~l~ 220 (449)
T TIGR00379 156 LEKLKIAVEPLRGIPI--LGVIPRQQDLKV--P----DRHLGLVPAGER-EIIQQIF------DWLAEVVEKYLDLDKLL 220 (449)
T ss_pred HHHHHHHHHHhCCCCE--EEEecCccccCC--C----CcccCCCChhhh-hhHHHHH------HHHHHHHHhhCCHHHHH
Confidence 33333 3444478888 888888777554 5 899999866653 1222221 12223446678888887
Q ss_pred HHH
Q 015657 249 KQT 251 (403)
Q Consensus 249 ~ql 251 (403)
+..
T Consensus 221 ~~a 223 (449)
T TIGR00379 221 EIA 223 (449)
T ss_pred HHh
Confidence 654
No 68
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.2e-13 Score=129.89 Aligned_cols=176 Identities=20% Similarity=0.275 Sum_probs=112.8
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh--------------hccCCceE
Q 015657 9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG--------------EQVGVPVY 74 (403)
Q Consensus 9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~--------------~~~gv~v~ 74 (403)
.+..-+..|++++|+||+||||++.+||.+|++.|++|.++|.|.+.|....-+-... ...++.+.
T Consensus 42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~m 121 (300)
T KOG3022|consen 42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLM 121 (300)
T ss_pred cccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEE
Confidence 3445566777778999999999999999999999999999999999988633221111 11122222
Q ss_pred eCCC----------CCCH--HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCC-ceEEEEEec--cc
Q 015657 75 TAGT----------EVKP--SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA--MT 139 (403)
Q Consensus 75 ~~~~----------~~~~--~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~-~~vllVvda--~~ 139 (403)
..+. |-.| ...+++.+....|...||+|||||++.....- .+...+.. +.+++|..+ ..
T Consensus 122 S~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehl------s~~~~~~~~~gAviVTTPQ~vA 195 (300)
T KOG3022|consen 122 SMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHL------SLVQFLRESDGAVIVTTPQEVA 195 (300)
T ss_pred EeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhh------heeecccccCceEEEeCchhhh
Confidence 1111 1111 23567778877788999999999998763211 11112222 556666555 23
Q ss_pred HHHHHHHHHHh-hhcCCeeEEEEccCCCC----C------chhHHHHHHHHhCCCeEEeeccCC
Q 015657 140 GQEAAALVTTF-NIEIGITGAILTKLDGD----S------RGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 140 g~~~~~~~~~~-~~~~~i~GvIlNk~D~~----~------~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
-+++.+.+.-+ ...+++.|+|-|+..-. . ..+....+.+.+|+|. +|..|-
T Consensus 196 l~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~--Lg~iPl 257 (300)
T KOG3022|consen 196 LQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPL--LGSLPL 257 (300)
T ss_pred hHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCe--EeecCC
Confidence 34444444433 35788999999987521 1 1255677888999988 776654
No 69
>PRK11519 tyrosine kinase; Provisional
Probab=99.54 E-value=2e-13 Score=148.38 Aligned_cols=148 Identities=24% Similarity=0.340 Sum_probs=102.2
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~~ 69 (403)
..++++|+|++. +|+||||++.+||..|+..|+||++||+|+++|.....+. ......
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~ 602 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIA 602 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcC
Confidence 456789999986 9999999999999999999999999999998875432210 011124
Q ss_pred CCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccH-H
Q 015657 70 GVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-Q 141 (403)
Q Consensus 70 gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g-~ 141 (403)
++.+++.+. ...|.+. +.+.++.++ ..||+|||||||.+...+.. .+.. .+|.+++|+.+ .+. .
T Consensus 603 ~l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-----~l~~--~~d~~l~Vvr~~~t~~~ 674 (719)
T PRK11519 603 NFDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-----IVGR--HVGTTLMVARYAVNTLK 674 (719)
T ss_pred CEEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-----HHHH--HCCeEEEEEeCCCCCHH
Confidence 566777654 3345443 456677775 78999999999987642211 1111 24888999887 333 3
Q ss_pred HHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 142 EAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+......+. ...++.|+|+|+++..
T Consensus 675 ~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 675 EVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3333344443 4678899999999744
No 70
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.54 E-value=3.9e-13 Score=127.94 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=100.5
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh--------------HHHH---------HH-hhhccC
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--------------IDQL---------VI-LGEQVG 70 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~--------------~~~l---------~~-~~~~~g 70 (403)
++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.. .+.+ .. .....+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 567666 5699999999999999999999999999999863211 1100 00 011235
Q ss_pred CceEeCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657 71 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA 144 (403)
Q Consensus 71 v~v~~~~~~~~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~ 144 (403)
+.+++.+.... ....+.+.++.+. ..||+||||||+.+.. ..... ....|.+++|+.+.. ...+.
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~------l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNA------VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHH------HHhCCeEEEEcCCCcHHHHHHH
Confidence 56665543211 1234566777775 6799999999998753 11111 123478888888732 23333
Q ss_pred HHHHHhhh-cCCeeEEEEccCCCCCc----hhHHHHHHHHhCCCeEEeeccCC
Q 015657 145 ALVTTFNI-EIGITGAILTKLDGDSR----GGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 145 ~~~~~~~~-~~~i~GvIlNk~D~~~~----~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
.....+.. .....++|+|+++.... ...+..+.+.++.|+ ++..+.
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 203 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPL--IGVIPE 203 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCce--eEEccC
Confidence 33332221 13356799999985321 112445667778776 454443
No 71
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.53 E-value=1.6e-13 Score=139.02 Aligned_cols=163 Identities=19% Similarity=0.241 Sum_probs=96.8
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH----------------HHHHh----------
Q 015657 13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID----------------QLVIL---------- 65 (403)
Q Consensus 13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~----------------~l~~~---------- 65 (403)
.++++|+|+ .+||+||||+|.+||.+|+.+|+||++||+|++...... .+...
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEI 181 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCcccccccCccHHHHHhccccccCHHhh
Confidence 455788877 559999999999999999999999999999998643210 00000
Q ss_pred ---hhccCCceEeCCCCCC------H-------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657 66 ---GEQVGVPVYTAGTEVK------P-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123 (403)
Q Consensus 66 ---~~~~gv~v~~~~~~~~------~-------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~ 123 (403)
....++++++.+.... + ...+.+.+..+. +.||+|||||||.+.. . ...
T Consensus 182 i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~------~~~ 252 (387)
T TIGR03453 182 IRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGF--L------TLS 252 (387)
T ss_pred cccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhH--H------HHH
Confidence 0112455555432110 0 123455666664 6899999999998742 1 111
Q ss_pred hhcCCceEEEEEeccc--HHH---HH-------HHHHHhh--hcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657 124 RVLNPTEVLLVVDAMT--GQE---AA-------ALVTTFN--IEIGITGAILTKLDGDS--RGGAALSVKEVSGKPI 184 (403)
Q Consensus 124 ~~~~~~~vllVvda~~--g~~---~~-------~~~~~~~--~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi 184 (403)
....++.+++++.+.. ... .. ..+.... ....+.++++|+++... +......+.+.++.++
T Consensus 253 al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~v 329 (387)
T TIGR03453 253 ALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQMVAFLRSLFGDHV 329 (387)
T ss_pred HHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCccHHHHHHHHHHHhcccc
Confidence 1223477777777621 111 11 1112221 12346789999998653 2333444556666655
No 72
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.52 E-value=3.6e-13 Score=128.73 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=89.1
Q ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhH------------HHHHHh-hh----------cc
Q 015657 15 PTVILLAG-LQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI------------DQLVIL-GE----------QV 69 (403)
Q Consensus 15 ~~iI~v~G-~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~------------~~l~~~-~~----------~~ 69 (403)
+.+|.|++ +||+||||+|.+||.+|+ .+|+||++||+||++..+. ..+... .. ..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE 81 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcccchhHHHHHhcccccccchhcccCCC
Confidence 56777775 499999999999999999 5679999999999864331 111110 01 13
Q ss_pred CCceEeCCCCCC-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 70 GVPVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 70 gv~v~~~~~~~~-----------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
+++++++..... ....+++.+..+ .++||+|||||||.+.. ..... ....+.+++.+.+.
T Consensus 82 ~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~--l~~na------l~asd~vlIP~~~~ 152 (259)
T COG1192 82 GLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGV--LTLNA------LAAADHVLIPVQPE 152 (259)
T ss_pred CceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhH--HHHHH------HHHcCeeEEecCch
Confidence 445555543332 111223333322 36899999999999842 11111 11125455555541
Q ss_pred -cH----HHHHHHHHHh----hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhC
Q 015657 139 -TG----QEAAALVTTF----NIEIGITGAILTKLDGDSR--GGAALSVKEVSG 181 (403)
Q Consensus 139 -~g----~~~~~~~~~~----~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g 181 (403)
.. ......+..+ ...+.+.++++|+++.... ......+.+..+
T Consensus 153 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 206 (259)
T COG1192 153 FLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHHHHHHHHHHHhc
Confidence 11 1112222222 1224678899999997643 344455555555
No 73
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.52 E-value=1.5e-13 Score=138.96 Aligned_cols=162 Identities=23% Similarity=0.295 Sum_probs=96.2
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHH-------------HHH--Hhh---------
Q 015657 13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID-------------QLV--ILG--------- 66 (403)
Q Consensus 13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~-------------~l~--~~~--------- 66 (403)
.++++|+|+ .+|||||||+|.+||.+|+.+|+||++||+ |+|...+.. .+. ...
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i 183 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAI 183 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhe
Confidence 356888887 559999999999999999999999999996 998743210 000 000
Q ss_pred ---hccCCceEeCCCCC------------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhh
Q 015657 67 ---EQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125 (403)
Q Consensus 67 ---~~~gv~v~~~~~~~------------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~ 125 (403)
...|+++++++... .+...+++.++.+. +.||||||||||.+.. .... . .
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~--~t~n---a---l 254 (388)
T PRK13705 184 KPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGI--GTIN---V---V 254 (388)
T ss_pred ecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhH--HHHH---H---H
Confidence 01355566553211 12345566677664 6899999999998753 1111 1 1
Q ss_pred cCCceEEEEEeccc--H---HHHHHHHHHhhh-------cCCeeEEEEccCCCCCc--hh-HHHHHHHHhCCCe
Q 015657 126 LNPTEVLLVVDAMT--G---QEAAALVTTFNI-------EIGITGAILTKLDGDSR--GG-AALSVKEVSGKPI 184 (403)
Q Consensus 126 ~~~~~vllVvda~~--g---~~~~~~~~~~~~-------~~~i~GvIlNk~D~~~~--~~-~~~~~~~~~g~pi 184 (403)
..+|.+++++.+.. - ......+..+.. ... ..+++|++|.... .. ....+.+.++..+
T Consensus 255 ~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~~~~~l~~~~~~~v 327 (388)
T PRK13705 255 CAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYSNSNGSQSPWMEEQIRDAWGSMV 327 (388)
T ss_pred HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEEecCCCchHHHHHHHHHHHHhcccc
Confidence 12377777776621 1 122222222211 112 3389999987642 22 3345666676554
No 74
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.50 E-value=3.8e-13 Score=147.18 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=100.1
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~~ 69 (403)
+.++++|+|++. +|+||||+|.+||..|++.|++|++||+|+++|.....+. ......
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 622 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAA 622 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCC
Confidence 456788988866 9999999999999999999999999999999876533221 011123
Q ss_pred CCceEeCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657 70 GVPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ 141 (403)
Q Consensus 70 gv~v~~~~~~-~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~ 141 (403)
++++++.+.. ..+.+. +.+.+..++ ..||+|||||||.+..... ..+.. ..|.+++|+.+ ....
T Consensus 623 ~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~-----~~l~~--~~D~vl~v~~~~~~~~~ 694 (754)
T TIGR01005 623 SLPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM-----RAAAR--LAIIMLLVTAYDRVVVE 694 (754)
T ss_pred CeeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH-----HHhhh--hCCeEEEEEEeCceeHH
Confidence 5667766542 233332 356677774 7899999999998753111 11111 24788888876 2223
Q ss_pred HHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657 142 EAAALVTTFN-IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~~ 169 (403)
.....++.+. ...++.|+|+|++|...+
T Consensus 695 ~~~~~~~~l~~~~~~~~GvvlN~~~~~~~ 723 (754)
T TIGR01005 695 CGRADAQGISRLNGEVTGVFLNMLDPNDE 723 (754)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCChhhh
Confidence 3333333332 245678999999986544
No 75
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.48 E-value=2.2e-12 Score=127.52 Aligned_cols=160 Identities=24% Similarity=0.272 Sum_probs=99.1
Q ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHH-------------Hhh
Q 015657 14 RPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV-------------ILG 66 (403)
Q Consensus 14 ~~~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~-------------~~~ 66 (403)
..++|+|+| +||+||||++.+||.+|+++|++|++||+|++.+... ..+. ...
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 457888875 5999999999999999999999999999999865421 0110 011
Q ss_pred hccCCceEeCCCCC---CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657 67 EQVGVPVYTAGTEV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ 141 (403)
Q Consensus 67 ~~~gv~v~~~~~~~---~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~ 141 (403)
...++.+++.+... .....++..++.++ ..|||||||||+..... .. .+. ..+|.+++|+++.. ..
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~--~~----~~L--~~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPA--AE----TAL--ESADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHH--HH----HHH--HHCCEEEEEcCCcHHHHH
Confidence 12345555544321 22345677777774 78999999999987421 11 111 12488888888732 23
Q ss_pred HHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 142 ~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
.+.+..+.+...-.-..+|+|+.... .-....+.+.++.|+
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~~--~~~~~~i~~~lg~~v 283 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAPA--GLDPEEIAESLGLPL 283 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCC--CCCHHHHHHHhCCCc
Confidence 33344443332211235677765422 123456777788887
No 76
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.48 E-value=1.3e-12 Score=125.06 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=99.5
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHH-HHHhCCCcEEEEeccCCChhh------------H----------HHHHHhhhccC
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLAN-YLKKQGKSCMLVAGDVYRPAA------------I----------DQLVILGEQVG 70 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~-~L~~~G~kVllVd~D~~rp~~------------~----------~~l~~~~~~~g 70 (403)
.++|+++ |+||+||||++++|+. .++.+|++|+++|+|+.-+.. + ++........|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 3556555 9999999999999944 455567888999999753221 1 11111222256
Q ss_pred CceEeCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHHHH
Q 015657 71 VPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEA 143 (403)
Q Consensus 71 v~v~~~~~~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~~~ 143 (403)
+.+++.+...... +.....+..+. ..|||||||||++++.+. +...+..+.+++|+.+ ....++
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFILSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHHhcCcEEEEeCCCcchHHHH
Confidence 7777765543222 22345566664 577999999999987422 1122233778888776 333555
Q ss_pred HHHHHH-hhhcCCeeE--EEEccCCCCCch-hHHHHHHHH-hCC-CeEEeeccC
Q 015657 144 AALVTT-FNIEIGITG--AILTKLDGDSRG-GAALSVKEV-SGK-PIKLVGRGE 191 (403)
Q Consensus 144 ~~~~~~-~~~~~~i~G--vIlNk~D~~~~~-~~~~~~~~~-~g~-pi~fig~ge 191 (403)
....+. ........+ +|+|++++.... .....+.+. ... ++.+++..+
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 206 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP 206 (262)
T ss_pred HHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccCh
Confidence 555443 344556666 999999854432 222222222 222 555666555
No 77
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.47 E-value=2.8e-12 Score=122.64 Aligned_cols=151 Identities=24% Similarity=0.249 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHh-h----hc---cCCceEeCCC---------
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL-G----EQ---VGVPVYTAGT--------- 78 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~-~----~~---~gv~v~~~~~--------- 78 (403)
++++++|+||+||||+++++|.++++.|++|++||+|+.+ ...+.+... + .. .++.....+.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999864 322222110 0 00 0111110000
Q ss_pred ------------------------CCCHHHHH--HHHHHHHHhCCCcEEEEeCCCCccccH-----HhHHHHHHHhhhcC
Q 015657 79 ------------------------EVKPSQIA--KQGLEEAKKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLN 127 (403)
Q Consensus 79 ------------------------~~~~~~~~--~~~l~~~~~~~~D~VIIDtpg~l~~d~-----~l~~el~~i~~~~~ 127 (403)
...+.+.+ .+..+.+...+||+|||||||..+.-. +.+..+........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCc
Confidence 01111111 222233444689999999999643210 00111111111111
Q ss_pred CceEEEEEec--ccHHHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 128 PTEVLLVVDA--MTGQEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 128 ~~~vllVvda--~~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+.+++|+.+ ....++.+....+. ..+++.|+|+|++...
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 2467888877 33355555555443 3567789999999754
No 78
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.46 E-value=4.2e-12 Score=119.89 Aligned_cols=203 Identities=20% Similarity=0.255 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHHhhh-------------ccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVILGE-------------QVG 70 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~~~~-------------~~g 70 (403)
+.|+|.|+||.||||++.||+++|+..|+||++|.|||...++ .+.+..... ..|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 4689999999999999999999999999999999999864322 233322221 124
Q ss_pred CceEeCCCCCC----HHHHHHHHHHHHH-----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657 71 VPVYTAGTEVK----PSQIAKQGLEEAK-----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT 139 (403)
Q Consensus 71 v~v~~~~~~~~----~~~~~~~~l~~~~-----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~ 139 (403)
+.+..++.+.. ...-+..+++.+. ..++|+|+.|..|......-.+- +.. -.++++++|... ++
T Consensus 81 i~CvEsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP----ir~-g~a~evyIVtSge~ms 155 (273)
T PF00142_consen 81 ILCVESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP----IRE-GYAQEVYIVTSGEFMS 155 (273)
T ss_dssp EEEEE---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH----HHT-TS-SEEEEEEBSSHHH
T ss_pred ceeeccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh----hhh-ccCCEEEEEecCcHHH
Confidence 55665554322 2223333333332 24589999998876643221111 111 123788888877 44
Q ss_pred HHHHHHHHH---Hhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC--CCCchhhhhhhcCCc
Q 015657 140 GQEAAALVT---TFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE--PFYPDRMAGRILGMG 212 (403)
Q Consensus 140 g~~~~~~~~---~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~--~f~~~~~~~r~lG~~ 212 (403)
...+.++.+ .|.. ...+.|+|+|.-+.......+....+.+|.|| ++..|+.+.+. .++...+++......
T Consensus 156 lyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i--~~~iPr~~~v~~ae~~~~TVie~~P~s~ 233 (273)
T PF00142_consen 156 LYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPI--IAFIPRSEIVQRAELYGKTVIEAAPDSE 233 (273)
T ss_dssp HHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEE--EEEE---HHHHHHHHCTS-CCCC-TTSH
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcE--EEecCchHHHHHHHHcCCEEEEeCCCcH
Confidence 455555554 4443 34689999998877777788888999999999 66665543322 233344444445555
Q ss_pred cHHHHHHHHHHHh
Q 015657 213 DVLSFVEKAQEVM 225 (403)
Q Consensus 213 dv~~l~e~~~e~~ 225 (403)
....|.+.++..+
T Consensus 234 ~a~~yr~LA~~I~ 246 (273)
T PF00142_consen 234 QAQEYRELARKIL 246 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 79
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.46 E-value=6e-12 Score=120.07 Aligned_cols=145 Identities=21% Similarity=0.282 Sum_probs=103.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------HHHHHhhhccCCceEeCCCCC---C
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGTEV---K 81 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------~~l~~~~~~~gv~v~~~~~~~---~ 81 (403)
.+++.+|.|+|.||+||||++..|...|.++|++|.++.-||..|-+- -.+..+....|+.+-+....- .
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 456789999999999999999999999999999999999999876541 122334445566665554322 2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
-....++++..+...+||+|||+|.|.-+.+.+... . +|.+++|.-+..|.+....-....+-..+ +++
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~-------~--aDt~~~v~~pg~GD~~Q~iK~GimEiaDi--~vI 196 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN-------M--ADTFLVVMIPGAGDDLQGIKAGIMEIADI--IVI 196 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh-------h--cceEEEEecCCCCcHHHHHHhhhhhhhhe--eeE
Confidence 234456777777778999999999998764433322 1 37777777777776665555544443333 899
Q ss_pred ccCCCC
Q 015657 162 TKLDGD 167 (403)
Q Consensus 162 Nk~D~~ 167 (403)
||.|..
T Consensus 197 NKaD~~ 202 (323)
T COG1703 197 NKADRK 202 (323)
T ss_pred eccChh
Confidence 999944
No 80
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.46 E-value=1.7e-11 Score=120.97 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=98.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh----H-HH--HHHhhhccCCceEeCCC--CC-C
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA----I-DQ--LVILGEQVGVPVYTAGT--EV-K 81 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~----~-~~--l~~~~~~~gv~v~~~~~--~~-~ 81 (403)
.+++.+|.|+|.+||||||++..|+.+|..+|++|.++..|+..+.. . |. +..+....++.+..... .. .
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 35689999999999999999999999999999999999999976532 1 11 22223333333333221 12 2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
....+.+++..+...+||+|||||+|....... +.. .+|-+++|+++..+.+.........+-.. -+|+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-------i~~--~aD~vlvv~~p~~gd~iq~~k~gi~E~aD--IiVV 201 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA-------VAG--MVDFFLLLQLPGAGDELQGIKKGIMELAD--LIVI 201 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH-------HHH--hCCEEEEEecCCchHHHHHHHhhhhhhhh--eEEe
Confidence 456677888888778999999999998743222 111 24777888776666555443332222222 3899
Q ss_pred ccCCCCCch
Q 015657 162 TKLDGDSRG 170 (403)
Q Consensus 162 Nk~D~~~~~ 170 (403)
||.|.....
T Consensus 202 NKaDl~~~~ 210 (332)
T PRK09435 202 NKADGDNKT 210 (332)
T ss_pred ehhcccchh
Confidence 999976543
No 81
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.45 E-value=1.8e-12 Score=121.04 Aligned_cols=146 Identities=22% Similarity=0.237 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-------hhHHHH-------------HHhhhc--------
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQL-------------VILGEQ-------- 68 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-------~~~~~l-------------~~~~~~-------- 68 (403)
+++++|+||+||||++++||.++++.|++|++|++|+.++ ...+.+ ......
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4788999999999999999999999999999999999883 221111 000000
Q ss_pred -cCCceEe-CCCCCCHHHH--HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC--CceEEEEEec--ccH
Q 015657 69 -VGVPVYT-AGTEVKPSQI--AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN--PTEVLLVVDA--MTG 140 (403)
Q Consensus 69 -~gv~v~~-~~~~~~~~~~--~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~--~~~vllVvda--~~g 140 (403)
.+..+.. ......+.+. +.+.++.++..+||+||||||+.......++ ...... .+.+++|+.+ ...
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~-----~~~l~~~~~~~vllV~~p~~~s~ 155 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLV-----RELLTDPERTSFRLVTLPEKLPL 155 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHH-----HHHccCCCceEEEEEeCCCccHH
Confidence 0111111 1122344443 3455566653349999999999743211111 111122 2678888887 333
Q ss_pred HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 141 QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 141 ~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.++...+..+. ...++.|+|+|++...
T Consensus 156 ~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 156 YETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 44444444443 3466789999998643
No 82
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.45 E-value=2.3e-12 Score=119.86 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-----CCceEeCCCCCCHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-----GVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-----gv~v~~~~~~~~~~~~~~~~ 89 (403)
|.|.+.+.+||+||||++..||..|+++|.+|.+||+||++|-..+. ..+... ++.++.. .....+.++
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~--~~a~~~~~~~~~~~V~~~----~e~~~l~~~ 75 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWA--ENAQRPGAWPDRIEVYEA----DELTILEDA 75 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHH--HhccccCCCCCCeeEEec----cchhhHHHH
Confidence 34555567799999999999999999999999999999999987432 222222 2334432 223456677
Q ss_pred HHHHHhCCCcEEEEeCCCCcc
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~ 110 (403)
++.+....||+||||+.|.-+
T Consensus 76 ~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCc
Confidence 777665679999999999764
No 83
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.45 E-value=6e-12 Score=118.65 Aligned_cols=143 Identities=23% Similarity=0.185 Sum_probs=90.2
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh---------h------------HHHHHHhhhccCCce
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---------A------------IDQLVILGEQVGVPV 73 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~---------~------------~~~l~~~~~~~gv~v 73 (403)
++|+|+|. ||+||||+|++||..|++.|++|++||+||+.-- . .++-..+....|+.+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 57888888 9999999999999999999999999999975300 0 001112334457788
Q ss_pred EeCCCCCCH-----------HHHHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH
Q 015657 74 YTAGTEVKP-----------SQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ 141 (403)
Q Consensus 74 ~~~~~~~~~-----------~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~ 141 (403)
++.+.-... ...+.+.+..+. ...||+||||||++.... .. +... ..|-++.|+.+....
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~---~~---~al~--~aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY---TR---QALA--AADLVLVVVNPDAAS 153 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH---HH---HHHH--hCCeEEEEeCCCHHH
Confidence 876542211 122355566665 468999999999987521 11 1111 137778888774432
Q ss_pred HHHHHHH-HhhhcCCeeEEEEccCCCCCch
Q 015657 142 EAAALVT-TFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 142 ~~~~~~~-~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ ...+ .+. .-..+++|++|..+.-
T Consensus 154 ~~-~L~q~~l~---~~~~~liNq~~~~s~l 179 (243)
T PF06564_consen 154 HA-RLHQRALP---AGHRFLINQYDPASQL 179 (243)
T ss_pred HH-HHHHhccc---CCcEEEEeccCccchH
Confidence 11 1111 111 1246999999976543
No 84
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.6e-12 Score=116.51 Aligned_cols=202 Identities=22% Similarity=0.230 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh------------hhHHHHHHhhh-------------ccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP------------AAIDQLVILGE-------------QVG 70 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp------------~~~~~l~~~~~-------------~~g 70 (403)
+.|++.|+||.||||++.|++++|++.|+||++|.|||-.- ...+.++.... -.|
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 56899999999999999999999999999999999998643 22333333221 123
Q ss_pred CceEeCCCCCCHH-------HHHHHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657 71 VPVYTAGTEVKPS-------QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT 139 (403)
Q Consensus 71 v~v~~~~~~~~~~-------~~~~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~ 139 (403)
+.+..++.+...+ -..-+.++++. .+..|+||.|..|......-.+- .+.-.++++++|.+. +.
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmP-----iReg~AdeiyIVtSge~Ma 156 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMP-----IREGYADEIYIVTSGEMMA 156 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeee-----hhcccCcEEEEEecCchHH
Confidence 4455554332111 11223334331 23469999999987654221110 011124788888887 44
Q ss_pred HHHHHHHHHH---hhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC--CCCchhhhhhhcCCc
Q 015657 140 GQEAAALVTT---FNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE--PFYPDRMAGRILGMG 212 (403)
Q Consensus 140 g~~~~~~~~~---~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~--~f~~~~~~~r~lG~~ 212 (403)
...+.++++. |.. .+++.|+|.|.-..+.....+....+..|.|+ +...|+.+.+. .+....++++.+...
T Consensus 157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~l--i~~vPr~~ivq~aE~~~kTvie~~P~s~ 234 (278)
T COG1348 157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQL--IHFVPRDNIVQKAELNGKTVIEYAPDSN 234 (278)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCce--EeeccchHHHHHHHHcCcchhhhCcchh
Confidence 4555555543 443 45689999999887777788888899999998 55555543322 234456666666665
Q ss_pred cHHHHHHHHHHH
Q 015657 213 DVLSFVEKAQEV 224 (403)
Q Consensus 213 dv~~l~e~~~e~ 224 (403)
....|++.+...
T Consensus 235 ~a~~yr~LA~~I 246 (278)
T COG1348 235 QAEEYRELAKKI 246 (278)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 85
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.44 E-value=2e-12 Score=112.34 Aligned_cols=107 Identities=27% Similarity=0.368 Sum_probs=74.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
.+.+++||+||||++.+||.+++.+|.+|+++|+|++.+...
T Consensus 3 ~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~-------------------------------------- 44 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD-------------------------------------- 44 (139)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC--------------------------------------
Confidence 344578999999999999999999999999999997665431
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhh--cCCeeEEEEccCCCCCch
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNI--EIGITGAILTKLDGDSRG 170 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~ 170 (403)
||+||||||+..... .. .+. ...|.+++|+++.. .......++.+.. .....++|+|+++.....
T Consensus 45 yd~VIiD~p~~~~~~--~~----~~l--~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~ 113 (139)
T cd02038 45 YDYIIIDTGAGISDN--VL----DFF--LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEG 113 (139)
T ss_pred CCEEEEECCCCCCHH--HH----HHH--HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHH
Confidence 999999999976432 11 111 12378888888832 2333333333322 233467999999865433
No 86
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.44 E-value=3.5e-12 Score=124.95 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=96.2
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-------HHHhhhccCCceEeCCCC---
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGTE--- 79 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-------l~~~~~~~gv~v~~~~~~--- 79 (403)
....++.+|.|+|++|+||||++..|+.++.++|++|.++++|++.+..... +.......++.+......
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL 108 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence 3445789999999999999999999999999999999999999988653211 111112233333333221
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657 80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 159 (403)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv 159 (403)
........+++..+...+||+|||||+|..+.... +.. ..|.++++..+..+.+.......+.... .-+
T Consensus 109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~-------i~~--~aD~i~vv~~~~~~~el~~~~~~l~~~~--~iv 177 (300)
T TIGR00750 109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSEVD-------IAN--MADTFVVVTIPGTGDDLQGIKAGLMEIA--DIY 177 (300)
T ss_pred cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhH-------HHH--hhceEEEEecCCccHHHHHHHHHHhhhc--cEE
Confidence 11233456667777667999999999996542221 111 1256666666666665555544443222 348
Q ss_pred EEccCCCCCc
Q 015657 160 ILTKLDGDSR 169 (403)
Q Consensus 160 IlNk~D~~~~ 169 (403)
|+||+|....
T Consensus 178 v~NK~Dl~~~ 187 (300)
T TIGR00750 178 VVNKADGEGA 187 (300)
T ss_pred EEEcccccch
Confidence 9999997643
No 87
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.42 E-value=2.8e-12 Score=112.82 Aligned_cols=137 Identities=21% Similarity=0.240 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH-------HHhhhccCCceEeCCCC---CCHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VILGEQVGVPVYTAGTE---VKPSQIA 86 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l-------~~~~~~~gv~v~~~~~~---~~~~~~~ 86 (403)
++.++|++|+||||++.+|+.++.+.|++|+++++|+..+.....+ .......++.+...... ..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 3678899999999999999999999999999999998664431111 11111122222222211 1122334
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAILTKLD 165 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~-~~~~~~i~GvIlNk~D 165 (403)
.+.++.++..+||+|||||||..... ..+ ....+.+++|+.+.. -++....+. .-+.. .-+++||+|
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~-------~~~--~~~Ad~~ivv~tpe~-~D~y~~~k~~~~~~~--~~~~~~k~~ 148 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSE-------VDI--ASMADTTVVVMAPGA-GDDIQAIKAGIMEIA--DIVVVNKAD 148 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhh-------hhH--HHhCCEEEEEECCCc-hhHHHHhhhhHhhhc--CEEEEeCCC
Confidence 55566665568999999998864311 111 112377788877752 233333332 11222 348999987
No 88
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.42 E-value=7.9e-13 Score=128.34 Aligned_cols=88 Identities=40% Similarity=0.611 Sum_probs=75.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
++++++|+|++||||||++++||.+++.+ | ++|.+|++|+|+.++.+++..++...++++.... .+. .+.+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~-~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPK-ELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHH-HHHHHHH
Confidence 57899999999999999999999999876 5 9999999999999999999999998898886543 233 3456666
Q ss_pred HHHhCCCcEEEEeCCC
Q 015657 92 EAKKKNVDVVIVDTAG 107 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg 107 (403)
.+ .+||+|||||||
T Consensus 269 ~~--~~~d~vliDt~G 282 (282)
T TIGR03499 269 RL--RDKDLILIDTAG 282 (282)
T ss_pred Hc--cCCCEEEEeCCC
Confidence 66 479999999997
No 89
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.39 E-value=9.1e-13 Score=124.07 Aligned_cols=145 Identities=24% Similarity=0.284 Sum_probs=88.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------HHHHHhhhccCCceEeCCCCCCH--
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGTEVKP-- 82 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------~~l~~~~~~~gv~v~~~~~~~~~-- 82 (403)
.++..+|.|+|+||+||||++..|+..|.++|++|.++..||..|-+- -.+..+....++.+-+...--..
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 346789999999999999999999999999999999999998766541 11223445556666555443222
Q ss_pred -HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 83 -SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 83 -~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
.....+++..++..+||+|||+|.|.-+.+. ++... +|.+++|+.+..|.+....-....+-. .-+|+
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-------~I~~~--aD~~v~v~~Pg~GD~iQ~~KaGimEia--Di~vV 174 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-------DIADM--ADTVVLVLVPGLGDEIQAIKAGIMEIA--DIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-------HHHTT--SSEEEEEEESSTCCCCCTB-TTHHHH---SEEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-------HHHHh--cCeEEEEecCCCccHHHHHhhhhhhhc--cEEEE
Confidence 2345667777777899999999999765322 22222 378888887755543322222222222 23899
Q ss_pred ccCCCC
Q 015657 162 TKLDGD 167 (403)
Q Consensus 162 Nk~D~~ 167 (403)
||.|..
T Consensus 175 NKaD~~ 180 (266)
T PF03308_consen 175 NKADRP 180 (266)
T ss_dssp E--SHH
T ss_pred eCCChH
Confidence 999943
No 90
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.38 E-value=1.2e-11 Score=127.45 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=107.1
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-Hhh---hccCCceEe--CCCCCCHHHH
Q 015657 13 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-ILG---EQVGVPVYT--AGTEVKPSQI 85 (403)
Q Consensus 13 ~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-~~~---~~~gv~v~~--~~~~~~~~~~ 85 (403)
.+|+.++|+|. +|+||||+|+.|+++|+++ |..+.+. |++++... .+. ...+.++.. .+.+....+.
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~G---pD~id~~p~~~~~~~~~sp~~a~n~~~d~~~~~~~~ 309 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIG---PDVRDIVPSLYLLREKMTKYNSIKIGDRGWSDVEEF 309 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCC---CChhhcCCcceecccccCChHHHhhcCCcccCHHHH
Confidence 44667899999 9999999999999999976 6655542 44433100 000 111111122 1223333333
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCccccH--H-hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHH---HHh--hhcCC
Q 015657 86 AKQGLEEAKKKNVDVVIVDTAGRLQIDK--A-MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV---TTF--NIEIG 155 (403)
Q Consensus 86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~--~-l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~---~~~--~~~~~ 155 (403)
+. .++..++|++||+++|++.... . ......++++.++ .++++|+|+..+ .++...+ ..+ ...++
T Consensus 310 ~~----~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~ 384 (476)
T PRK06278 310 LE----FVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVK 384 (476)
T ss_pred HH----HHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCc
Confidence 33 3333478999999999887531 1 1124456777776 799999999433 4444433 334 45788
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 156 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 156 i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
+.|||+|++....+...+..+.+.+|+|| +|. ++
T Consensus 385 i~GVIlN~v~~~~~~~~~~~~le~~gvpV--LG~-~~ 418 (476)
T PRK06278 385 VEGIILNKVYNMEIFEKVKKIAENSNINL--IGV-GK 418 (476)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCCCE--EEe-cc
Confidence 99999999998777777778888899999 888 44
No 91
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.36 E-value=8e-12 Score=103.59 Aligned_cols=97 Identities=27% Similarity=0.303 Sum_probs=66.5
Q ss_pred EEE-EcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 18 ILL-AGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 18 I~v-~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
|++ .++||+||||++.+||..+++. |++|+++|+|++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 444 4669999999999999999998 999999999988654
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHH---HHhhhc-CCeeEEEEcc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV---TTFNIE-IGITGAILTK 163 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~---~~~~~~-~~i~GvIlNk 163 (403)
|+||||||+...... ..+. ...|.+++|+++... ..+.... +..... ..-..+|+||
T Consensus 44 ---D~IIiDtpp~~~~~~------~~~l--~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 ---DYVVVDLGRSLDEVS------LAAL--DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred ---CEEEEeCCCCcCHHH------HHHH--HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 999999999875311 1111 124788888887322 2333333 222222 2345678875
No 92
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.35 E-value=9.2e-12 Score=102.26 Aligned_cols=94 Identities=30% Similarity=0.372 Sum_probs=66.3
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 18 ILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 18 I~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
|++. .+||+||||++.+||.+|+++|.+|+++|+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~------------------------------------------ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ------------------------------------------ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC------------------------------------------
Confidence 4555 469999999999999999999999999999966
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHH------HHhhhcCCeeEEEEc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALV------TTFNIEIGITGAILT 162 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~------~~~~~~~~i~GvIlN 162 (403)
||+||||+|+...... . .+.. ..+.+++++++.. ...+.+.. +.......+.++|+|
T Consensus 40 -~d~viiD~p~~~~~~~--~----~~l~--~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 40 -YDYIIIDTPPSLGLLT--R----NALA--AADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred -CCEEEEeCcCCCCHHH--H----HHHH--HCCEEEEeccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 8999999999875311 1 1111 2478888888732 22222222 223445567778776
No 93
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.30 E-value=1e-10 Score=109.31 Aligned_cols=174 Identities=20% Similarity=0.276 Sum_probs=100.5
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---cCCChhhHHHHHHhhhccCCc-------eEeCCCCCC-----
Q 015657 18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYRPAAIDQLVILGEQVGVP-------VYTAGTEVK----- 81 (403)
Q Consensus 18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---D~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~----- 81 (403)
++|+|. +|+|||++++.|+.+|+++|++|.+... .+.......+...+....+++ .+.......
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 677888 9999999999999999999999987651 111100000111111111211 011111111
Q ss_pred -------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-h
Q 015657 82 -------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-N 151 (403)
Q Consensus 82 -------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~ 151 (403)
..+.+.+.++.+. ++||+|||||+|++...........++...+. .++++|+++..+ .++...+..+ .
T Consensus 82 ~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~-~pvilV~~~~~~~i~~~~~~i~~l~~ 159 (222)
T PRK00090 82 ALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ-LPVILVVGVKLGCINHTLLTLEAIRA 159 (222)
T ss_pred HHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHH
Confidence 1123455566554 78999999999986432111112234444454 788999988443 2222333323 2
Q ss_pred hcCCeeEEEEccCCCC-Cc--hhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 152 IEIGITGAILTKLDGD-SR--GGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 152 ~~~~i~GvIlNk~D~~-~~--~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
..+++.|+|+|+++.. .. ......+.+.++.|+ +|..+..+.
T Consensus 160 ~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~v--lg~ip~~~~ 204 (222)
T PRK00090 160 RGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPL--LGELPYLAE 204 (222)
T ss_pred CCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCe--EEecCCCCC
Confidence 3677899999999865 22 234456677788888 888777543
No 94
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.28 E-value=7.9e-12 Score=116.98 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---HhhhccCCc----eE-eCCC-----CCC-H
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---ILGEQVGVP----VY-TAGT-----EVK-P 82 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---~~~~~~gv~----v~-~~~~-----~~~-~ 82 (403)
|++.+|+||+||||+|.+||.+|++.|++|.++|+|.+.|.....+. ......+++ .+ .... ... +
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~~ 82 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGEN 82 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-HH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCcc
Confidence 34455999999999999999999999999999999999877643321 111111222 11 1111 111 1
Q ss_pred H--HHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657 83 S--QIAKQGLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 83 ~--~~~~~~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
. ..+.+++..+. .++||+||||||...
T Consensus 83 ~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 83 VEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred hhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 1 24566677764 689999999998754
No 95
>PRK13768 GTPase; Provisional
Probab=99.27 E-value=1.1e-10 Score=111.67 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=84.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------HHHHHHhhh---ccCC----ceEeCCCCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGE---QVGV----PVYTAGTEV 80 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------~~~l~~~~~---~~gv----~v~~~~~~~ 80 (403)
+.+++++|++||||||++.+++.+++.+|++|++|+.|+..... +..+....+ ..++ .++... .
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~-~- 79 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASV-D- 79 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHH-H-
Confidence 46899999999999999999999999999999999999864211 111101110 1010 011000 0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCcccc--HHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHH-----h
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTT-----F 150 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d--~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~-----~ 150 (403)
.....+......+...+.|++||||||..... ......+........++.+++|+|+... .+....... .
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~ 159 (253)
T PRK13768 80 LLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL 159 (253)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence 01122233444454456799999999976531 1111111111111115788999999432 222221111 1
Q ss_pred hhcCCeeEEEEccCCCCCc
Q 015657 151 NIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 151 ~~~~~i~GvIlNk~D~~~~ 169 (403)
....+ .-+|+||+|....
T Consensus 160 ~~~~~-~i~v~nK~D~~~~ 177 (253)
T PRK13768 160 RLGLP-QIPVLNKADLLSE 177 (253)
T ss_pred HcCCC-EEEEEEhHhhcCc
Confidence 22222 3489999997544
No 96
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.25 E-value=1.1e-10 Score=114.57 Aligned_cols=42 Identities=40% Similarity=0.577 Sum_probs=37.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
.++++++|+|||||||+|+++|.+++++|++|++++.||.++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 368999999999999999999999999999999999998753
No 97
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.24 E-value=1.4e-10 Score=109.40 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCe-eEEEEccC
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGI-TGAILTKL 164 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i-~GvIlNk~ 164 (403)
......++ +..|++|||||++... .++ ..+...|-+++|..++ .+.+-...+...-+.+++ .++|+||.
T Consensus 154 ~~~kk~a~-E~~~~~IIDsaaG~gC--pVi------~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~ 224 (284)
T COG1149 154 TALKKHAK-ELADLLIIDSAAGTGC--PVI------ASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRY 224 (284)
T ss_pred HHHHHhhh-hhcceeEEecCCCCCC--hHH------HhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecC
Confidence 33333443 3379999999999875 222 2233458889998884 343333333223333443 77999999
Q ss_pred CCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 165 DGDSRGGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 165 D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
+.-.. .++...+..|.|+ ++..|..++
T Consensus 225 ~~g~s--~ie~~~~e~gi~i--l~~IPyd~~ 251 (284)
T COG1149 225 NLGDS--EIEEYCEEEGIPI--LGEIPYDKD 251 (284)
T ss_pred CCCch--HHHHHHHHcCCCe--eEECCcchh
Confidence 43222 5778888999999 777766555
No 98
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.24 E-value=8.4e-11 Score=113.45 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=116.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
|+++|++|+||||++.+|......-. ++.-++.. ....+.. ......|+.+... ...+.+.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~-~~g~v~~~---~~~~D~~-~~E~~rgiti~~~-------------~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIH-KIGEVHGG---GATMDFM-EQERERGITIQSA-------------ATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCc-ccccccCC---ccccCCC-ccccCCCcCeecc-------------EEEEEECC
Confidence 78999999999999999986553211 11111100 0000000 0111223322211 11112467
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC--chhH
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS--RGGA 172 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~--~~~~ 172 (403)
+.+++|||||...+... ...... ..+.+++|+|+..+ ......+.... ...++ -+++||+|... ....
T Consensus 64 ~~i~liDTPG~~df~~~----~~~~l~--~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~~~~~ 136 (270)
T cd01886 64 HRINIIDTPGHVDFTIE----VERSLR--VLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADFFRV 136 (270)
T ss_pred EEEEEEECCCcHHHHHH----HHHHHH--HcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCCHHHH
Confidence 89999999997643222 222222 23788999999554 11222222222 22333 48999999753 2234
Q ss_pred HHHHHHHhCCCeE----EeeccCCcCC---CC-----CCCch-----hhhhhhcC-CccHHHHHHHHHHHhhHhHHHHHH
Q 015657 173 ALSVKEVSGKPIK----LVGRGERMED---LE-----PFYPD-----RMAGRILG-MGDVLSFVEKAQEVMQQEDAEEMQ 234 (403)
Q Consensus 173 ~~~~~~~~g~pi~----fig~ge~v~~---l~-----~f~~~-----~~~~r~lG-~~dv~~l~e~~~e~~~~~~~~~~~ 234 (403)
...+.+.++..+. +++....+.. +- .|... ...+-... ..++.++.+.+.|.+.+.+++.+.
T Consensus 137 ~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e 216 (270)
T cd01886 137 VEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELME 216 (270)
T ss_pred HHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5666666665422 2333222211 10 01000 00000000 123456777777777777787888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657 235 KKIMSANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 235 ~~~~~~~~~~edl~~ql~~~~k~g~ 259 (403)
+++..++++.+++.+.++.....|.
T Consensus 217 ~yl~~~~~~~~el~~~l~~~~~~~~ 241 (270)
T cd01886 217 KYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHcCc
Confidence 8888889999999999999998884
No 99
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.21 E-value=8.1e-10 Score=106.35 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=89.7
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCCCc--h
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDSR--G 170 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~~~--~ 170 (403)
+.++++.||||||...+.... ..... .++.+++|+|+..+. ............-....+++||+|.... .
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~----~~~l~--~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGET----RAALR--AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHH----HHHHH--HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 367899999999975322222 22222 348899999996542 1122222222111234589999996543 2
Q ss_pred hHHHHHHHHhCCCeEE----eeccCCcCCCC--------CCCchhhhhhhcCC-----ccHHHHHHHHHHHhhHhHHHHH
Q 015657 171 GAALSVKEVSGKPIKL----VGRGERMEDLE--------PFYPDRMAGRILGM-----GDVLSFVEKAQEVMQQEDAEEM 233 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~f----ig~ge~v~~l~--------~f~~~~~~~r~lG~-----~dv~~l~e~~~e~~~~~~~~~~ 233 (403)
.....+.+.++.++.. ++.++.+..+. .|.+... .....+ ..+.++.+.+.|.+.+.+++.+
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~ 213 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAP-SEEIEIPEELKEEVAEAREELLEAVAETDDELM 213 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCc-ceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 3445666777876542 22333321111 0100000 000011 1123455566666677777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 015657 234 QKKIMSANFDFNDFLKQTRTVARMGSM 260 (403)
Q Consensus 234 ~~~~~~~~~~~edl~~ql~~~~k~g~~ 260 (403)
.+++..++++.+++.+.++.....|.+
T Consensus 214 e~yl~~~~~~~~~l~~~l~~~~~~~~~ 240 (268)
T cd04170 214 EKYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence 888888899999999999999988764
No 100
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.18 E-value=6.6e-10 Score=105.25 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=111.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd-~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
|++.|++|+||||++..|......-. +..-++ .+.. .+.. . .....++.+... ...+.++
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~-~~g~v~~~~~~-~D~~-~---~e~~rg~ti~~~-------------~~~~~~~ 62 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIR-KLGSVDKGTTR-TDTM-E---LERQRGITIFSA-------------VASFQWE 62 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCcc-ccccccCCccc-CCCc-h---hHhhCCCceeee-------------eEEEEEC
Confidence 78999999999999999987543210 100011 1100 0000 0 011122222111 0111246
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHH-hh-hcCCeeEEEEccCCCCC--chh
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTT-FN-IEIGITGAILTKLDGDS--RGG 171 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~-~~-~~~~i~GvIlNk~D~~~--~~~ 171 (403)
++.+.++||||...+...... ... ..+.+++|+|+..+ +........ .. ...+ .-+++||+|... ...
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~----~l~--~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~~~ 135 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVER----SLS--VLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGADLEK 135 (237)
T ss_pred CEEEEEEeCCCccchHHHHHH----HHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCCHHH
Confidence 789999999998654322222 112 23888999999554 211222222 22 2333 348999999653 445
Q ss_pred HHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 015657 172 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251 (403)
Q Consensus 172 ~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl~~ql 251 (403)
.+.++.+.++.++..+-. |...+ ... ...++.+.+.|.+.+.+++.|.+++..++++.+++++.+
T Consensus 136 ~~~~i~~~~~~~~~~~~~-p~~~~----~~~----------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l 200 (237)
T cd04168 136 VYQEIKEKLSSDIVPMQK-VGLAP----NIC----------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNEL 200 (237)
T ss_pred HHHHHHHHHCCCeEEEEC-CcEee----eee----------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 667788888876543221 11100 000 011222445555556677778888888899999999999
Q ss_pred HHHHhcCC
Q 015657 252 RTVARMGS 259 (403)
Q Consensus 252 ~~~~k~g~ 259 (403)
+.....|.
T Consensus 201 ~~~~~~~~ 208 (237)
T cd04168 201 SARIAKRK 208 (237)
T ss_pred HHHHHhCC
Confidence 99998884
No 101
>COG1159 Era GTPase [General function prediction only]
Probab=99.16 E-value=3.3e-10 Score=108.37 Aligned_cols=190 Identities=17% Similarity=0.223 Sum_probs=116.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.-.++++|.|.+||||+..+|. |.|+.+++--++... ....|+. .
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~QTTR--------~~I~GI~--t------------------ 50 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQTTR--------NRIRGIV--T------------------ 50 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecCCcchhh--------hheeEEE--E------------------
Confidence 34568999999999999999999 999999885533221 1222222 1
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
.+++.+|+|||||.+.....+...+.. ....-..|-+++|+|+.. +.....++..+...-...-+++||+|....
T Consensus 51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 257899999999988653333222222 222234688899999943 333333444444321234489999998766
Q ss_pred hhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHh-------hHhHHHHHHHHHhcCCC
Q 015657 170 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-------QQEDAEEMQKKIMSANF 242 (403)
Q Consensus 170 ~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~-------~~~~~~~~~~~~~~~~~ 242 (403)
...++.+.+....-..|. .--.+|...|.+ +..|++.+.+.+ +++..++..+++...|+
T Consensus 130 ~~~l~~~~~~~~~~~~f~-------------~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 130 KTVLLKLIAFLKKLLPFK-------------EIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred HHHHHHHHHHHHhhCCcc-------------eEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence 654444444433222111 111112223332 445555555544 67888888999999999
Q ss_pred CHHHHHHHHH
Q 015657 243 DFNDFLKQTR 252 (403)
Q Consensus 243 ~~edl~~ql~ 252 (403)
.+|.++..++
T Consensus 196 iREk~~~~l~ 205 (298)
T COG1159 196 IREKLLLLLR 205 (298)
T ss_pred HHHHHHHhcc
Confidence 9998887665
No 102
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.16 E-value=9.2e-10 Score=101.15 Aligned_cols=175 Identities=25% Similarity=0.312 Sum_probs=101.3
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh---hhHHHHHHhhhccC----CceEeCCCCCCHHHH--
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAIDQLVILGEQVG----VPVYTAGTEVKPSQI-- 85 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp---~~~~~l~~~~~~~g----v~v~~~~~~~~~~~~-- 85 (403)
+.++|+|. +|+|||+++..|+.+|.++|.+|.++..=..+. ...+.+........ +..+.......|.-.
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAE 80 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhh
Confidence 35788888 999999999999999999999998654221111 11222221111110 011111222222211
Q ss_pred -------HHHH-HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcC
Q 015657 86 -------AKQG-LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEI 154 (403)
Q Consensus 86 -------~~~~-l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~ 154 (403)
+.+. ++.+ ..++|++|||++|+............++.+.++ .++++|+++..+ .++...+..+ ....
T Consensus 81 ~~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~~~~~~~~g~ 158 (199)
T PF13500_consen 81 LEGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLTIEALKQRGI 158 (199)
T ss_dssp HHT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHCTTS
T ss_pred ccCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 1122 2333 368999999999988642111122245555665 689999998443 3443333433 3567
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC
Q 015657 155 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE 197 (403)
Q Consensus 155 ~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~ 197 (403)
++.|+|+|+++.. .....+.+.++.|+ +|..|...++.
T Consensus 159 ~v~GvI~N~~~~~---~~~~~l~~~~~i~v--lg~iP~~~~L~ 196 (199)
T PF13500_consen 159 RVLGVILNRVPEP---ENLEALREKSGIPV--LGVIPEDPDLS 196 (199)
T ss_dssp -EEEEEEEECTCC---HHHHHHHHHHCCEE--CE---SSTT--
T ss_pred CEEEEEEECCCCH---HHHHHHHHhCCCCE--EEECCCCcccc
Confidence 8999999998665 46777888889888 88888776654
No 103
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.14 E-value=2.5e-10 Score=101.78 Aligned_cols=140 Identities=26% Similarity=0.272 Sum_probs=78.1
Q ss_pred EEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh---h-HHHHHHh-h--hccC--CceEeCCCCCCH-------
Q 015657 20 LAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---A-IDQLVIL-G--EQVG--VPVYTAGTEVKP------- 82 (403)
Q Consensus 20 v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~---~-~~~l~~~-~--~~~g--v~v~~~~~~~~~------- 82 (403)
|+|. +|+||||++.+|+.+|+++|++|.++........ . .+.+... . .... .++.... ...|
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~ 80 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFAL-PLSPHIAADQE 80 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCC-CCChHHHHHHh
Confidence 5666 9999999999999999999999998742221111 0 1111100 0 0000 0111110 1111
Q ss_pred -----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcC
Q 015657 83 -----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEI 154 (403)
Q Consensus 83 -----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~ 154 (403)
.+.+.+.+..+. ++||+||||+||++...........++...+. +++++|+++..+ .++......+. ..+
T Consensus 81 ~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~-~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 81 GRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQ-LPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred CCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 112345556654 78999999999876531111111233444444 789999998433 23333333443 368
Q ss_pred CeeEEEEc
Q 015657 155 GITGAILT 162 (403)
Q Consensus 155 ~i~GvIlN 162 (403)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 89999997
No 104
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.14 E-value=2.9e-10 Score=95.87 Aligned_cols=89 Identities=27% Similarity=0.369 Sum_probs=61.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce-EeCC--------CCCCHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV-YTAG--------TEVKPSQIAKQ 88 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v-~~~~--------~~~~~~~~~~~ 88 (403)
|+++|++|+||||++.+|+.+|+++|++|+++|+|+ +...+.+.... .+... +..+ .........++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~--~~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--GEIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc--CCceEEEEecccccCCCCCEehhhHHHHH
Confidence 789999999999999999999999999999999998 33333332111 11111 1111 11112236677
Q ss_pred HHHHHHhCCCcEEEEeCCCCcc
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
.+.++...++|++|+||++++.
T Consensus 78 ~l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred HHHHeEccCCCEEEEecHHHHH
Confidence 7777655789999999999873
No 105
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.10 E-value=2.7e-10 Score=111.98 Aligned_cols=41 Identities=37% Similarity=0.557 Sum_probs=38.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.++++++|+|||||||+++++|.++++.|++|++|..||.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 58999999999999999999999999999999999999865
No 106
>PRK00784 cobyric acid synthase; Provisional
Probab=99.09 E-value=3.6e-09 Score=110.33 Aligned_cols=177 Identities=20% Similarity=0.282 Sum_probs=103.5
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---------cCCC--hhhHHHHHHhh------hccCCceEeC-
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---------DVYR--PAAIDQLVILG------EQVGVPVYTA- 76 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---------D~~r--p~~~~~l~~~~------~~~gv~v~~~- 76 (403)
+.++|+|. +|||||++++.|+++|+++|++|..+.. .+.. +.....+.... ...+.-++..
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~~~~~ 82 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQ 82 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEEecCC
Confidence 35888999 9999999999999999999999885543 0000 00111111000 0111111100
Q ss_pred ----------CC-------------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCcc-c---cHHhHHHHHHHhhhcCCc
Q 015657 77 ----------GT-------------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ-I---DKAMMDELKDVKRVLNPT 129 (403)
Q Consensus 77 ----------~~-------------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~-~---d~~l~~el~~i~~~~~~~ 129 (403)
+. .....+.+.+.+..+. .+||++|||++|++. . +.. ....++++.++ .
T Consensus 83 sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~--~~~~dlak~l~-~ 158 (488)
T PRK00784 83 SDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRD--IANMGFAEAAD-A 158 (488)
T ss_pred CCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCC--chhHHHHHHcC-C
Confidence 00 1112233455666553 689999999997764 1 111 12346666666 7
Q ss_pred eEEEEEecccH---HHHHHHHHHhhh--cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCCCCC
Q 015657 130 EVLLVVDAMTG---QEAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDLEP 198 (403)
Q Consensus 130 ~vllVvda~~g---~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~l~~ 198 (403)
++++|+++..+ ..+......+.. ...+.|+|+|+++.+.. ......+.+.++.|+ +|..|..+.+..
T Consensus 159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipv--LG~iP~~~~L~~ 232 (488)
T PRK00784 159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPV--LGVLPYLDDLRL 232 (488)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcCCCc
Confidence 99999998443 222222233332 35899999999986521 122233555678888 888888776543
No 107
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.07 E-value=5.4e-09 Score=108.56 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=101.2
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccC-------CCh---hhHHHHH-Hhh------hccCCceEeC---
Q 015657 18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDV-------YRP---AAIDQLV-ILG------EQVGVPVYTA--- 76 (403)
Q Consensus 18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~-------~rp---~~~~~l~-~~~------~~~gv~v~~~--- 76 (403)
|+|+|. ++||||++|+.|++.|+++|++|..+..-. ... ....++. ..+ ...+.-.+..
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 578899 999999999999999999999999665421 000 0011111 110 1111111211
Q ss_pred --------CCCC--------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccc-c---HHhHHHHHHHhhhcCCce
Q 015657 77 --------GTEV--------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-D---KAMMDELKDVKRVLNPTE 130 (403)
Q Consensus 77 --------~~~~--------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~-d---~~l~~el~~i~~~~~~~~ 130 (403)
+... ...+.+++.+..+. .+||+||||++|++.. + .. ....++.+.+. .+
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d--~s~~~lA~~l~-ap 156 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRD--LANMRIAELAN-AD 156 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCC--chHHHHHHHhC-CC
Confidence 1000 01233455566653 6899999999998753 0 11 11234444454 68
Q ss_pred EEEEEecccHH---HHHHHHHHhhh--cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCCC
Q 015657 131 VLLVVDAMTGQ---EAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDL 196 (403)
Q Consensus 131 vllVvda~~g~---~~~~~~~~~~~--~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~l 196 (403)
+++|+|...+. .+...+..+.. ...+.|+|+|+++.+.. ...+..+.+.++.|+ +|..+..+++
T Consensus 157 VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~gipv--LG~ip~~~~l 227 (475)
T TIGR00313 157 AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELTGIPV--LGVLPYDENL 227 (475)
T ss_pred EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhhCCCE--EEEecCCCcC
Confidence 89999986542 22222233333 26789999999987532 123344456679998 8888777664
No 108
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.05 E-value=1.4e-09 Score=95.54 Aligned_cols=115 Identities=24% Similarity=0.302 Sum_probs=72.2
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH---------------------------HHHHhhh
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID---------------------------QLVILGE 67 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~---------------------------~l~~~~~ 67 (403)
++|+|+|+ +|+||||+|.+||..|++.|++|++||+|.+.+.... .+.....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 57888886 9999999999999999999999999999987654311 1111111
Q ss_pred ---ccCCceEeCCCCCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 68 ---QVGVPVYTAGTEVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 68 ---~~gv~v~~~~~~~~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
..++.+++......+.. .+...++.++ +.||+||||+|+........ .+.. ..|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~~-----~~l~--~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDTQ-----AVLE--LADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHHH-----HHHT--THSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHHH-----HHHH--HCCEEEEEECCC
Confidence 12344444433333332 3567777775 58999999999987632210 1111 238889988874
No 109
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.04 E-value=1e-09 Score=103.36 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC-----hhhH---------HHHHHhhhccCCceE-eCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----PAAI---------DQLVILGEQVGVPVY-TAG 77 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r-----p~~~---------~~l~~~~~~~gv~v~-~~~ 77 (403)
++|.+|+++|..||||||++..|-.++..++.+..+|.+||.- |+.+ +-++...-..+-.+. ...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4678899999999999999999999999999899999999631 1111 111111110000000 000
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccc--cHHhHHHHHHHhhhcCCceEEEEEecccH---HHHH-HHH----
Q 015657 78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAA-ALV---- 147 (403)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~--d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~-~~~---- 147 (403)
......+.+...++.. .+.+|+|||||||.+.. +.+.-.-+.+.....-|.-+++|+|.... .... +.+
T Consensus 97 LF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 1111122233445554 36799999999999864 22111111222233346778889997211 1111 111
Q ss_pred HHhhhcCCeeEEEEccCCCCCch
Q 015657 148 TTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 148 ~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
--+...++. -+++||.|...+.
T Consensus 176 ilyktklp~-ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 176 ILYKTKLPF-IVVFNKTDVSDSE 197 (366)
T ss_pred HHHhccCCe-EEEEecccccccH
Confidence 112333433 3778888865443
No 110
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.03 E-value=1.1e-08 Score=95.26 Aligned_cols=176 Identities=25% Similarity=0.290 Sum_probs=107.7
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc---CCChhhHHHHHHhhhccCCc-------eEeCCCCCCHHH
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD---VYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQ 84 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D---~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~~~~ 84 (403)
+.++|+|. .|+|||++++.|+.+|+.+|++|.....= ....+..++...+....+++ .|.......|.-
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhl 82 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHL 82 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCCCCcHH
Confidence 56899999 99999999999999999999999854311 11110001222222222222 222222223322
Q ss_pred ------------HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHH-H
Q 015657 85 ------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT-T 149 (403)
Q Consensus 85 ------------~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~-~ 149 (403)
.+...+..+. ..||+|||+++|++...-.--..+.++..... .++++|+....| .++.-.++ .
T Consensus 83 Aa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~eal 160 (223)
T COG0132 83 AAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVEAL 160 (223)
T ss_pred HHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcC-CCEEEEecCCccHHHHHHHHHHHH
Confidence 2344444554 58999999999998762111133455556555 889999988443 33433333 3
Q ss_pred hhhcCCeeEEEEccCCCCCchhH--HHHHHHHhCCCeEEeeccCCcCC
Q 015657 150 FNIEIGITGAILTKLDGDSRGGA--ALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 150 ~~~~~~i~GvIlNk~D~~~~~~~--~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
-...+++.|+|+|.+........ ...+.+.++.|+ +|..+...+
T Consensus 161 ~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~--~g~~p~~~~ 206 (223)
T COG0132 161 RARGLPLAGWVANGINPELDHYAEINATLLKRIGAPL--LGIIPYLPE 206 (223)
T ss_pred HHCCCCEEEEEEccCCCchhHHHHHHHHHHHhcCCCc--cccccCCcc
Confidence 45788999999999975533222 235677788888 666666544
No 111
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.01 E-value=8.5e-09 Score=89.09 Aligned_cols=126 Identities=24% Similarity=0.231 Sum_probs=85.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
+.++| .|+||||++..|+..|.++|.+|..+.....
T Consensus 3 ~~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~------------------------------------------- 38 (134)
T cd03109 3 GFGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQT------------------------------------------- 38 (134)
T ss_pred EEeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC-------------------------------------------
Confidence 34556 5599999999999999999999997765522
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCCc--hhH
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR--GGA 172 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~--~~~ 172 (403)
+|++|||++|++......-....++.+.++ .++++|++...+ .++...+... ...+.+.|+|.|+++.... ...
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~ 117 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLN 117 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhh
Confidence 699999999988742111112344555555 678899877433 3333333322 3467789999999986532 233
Q ss_pred HHHHHHHhCCCeEEeecc
Q 015657 173 ALSVKEVSGKPIKLVGRG 190 (403)
Q Consensus 173 ~~~~~~~~g~pi~fig~g 190 (403)
...+.+.++.|+ +|..
T Consensus 118 ~~~i~~~~gip~--LG~I 133 (134)
T cd03109 118 VETIERLTGIPV--LGIV 133 (134)
T ss_pred HHHHHHhcCCCE--EEeC
Confidence 566778888887 6653
No 112
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.00 E-value=1.7e-08 Score=95.26 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=100.4
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-----hh-HHHHHHhhhccCCc---------eEeCC---
Q 015657 17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AA-IDQLVILGEQVGVP---------VYTAG--- 77 (403)
Q Consensus 17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-----~~-~~~l~~~~~~~gv~---------v~~~~--- 77 (403)
.++|+|. +|+|||++++.|+.+|.++|++|.++..=..+. .. ..+...+....+.+ .+...
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 5888888 999999999999999999999998765321110 00 00111111222211 01110
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-
Q 015657 78 ----TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF- 150 (403)
Q Consensus 78 ----~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~- 150 (403)
...+. +.+.+.++.+. .+||+||||++|++...-.-...+.++..... .++++|+....+. ++.-....+
T Consensus 84 ~~~~~~i~~-~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~-~pvilV~~~~lg~in~~lLt~~~l~ 160 (231)
T PRK12374 84 VAHSCPINY-TLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQ-LPVLMVVGIQEGCINHALLTAQAIA 160 (231)
T ss_pred HHcCCcCCH-HHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhC-CCEEEEECCCcChHHHHHHHHHHHH
Confidence 01111 22344555554 78999999999977642211111233444443 7889999775442 332223333
Q ss_pred hhcCCeeEEEEccCCCCCch--hHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 151 NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 151 ~~~~~i~GvIlNk~D~~~~~--~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
...+.+.|+|+|+++..... .....+.+..+.|+ +|..|..+.
T Consensus 161 ~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~--lg~iP~~~~ 205 (231)
T PRK12374 161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IGELPYLPR 205 (231)
T ss_pred hCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCE--EEEeCCCCC
Confidence 45788999999999865322 22344556677777 777766544
No 113
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.97 E-value=3.7e-09 Score=101.88 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=107.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.|.|+++|++|+||||++.+|.+....-. +..-++... .+....+.. ......++.+..... .+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~-~~g~v~~~~~~~~t~~D~~-~~e~~rg~si~~~~~-------------~~ 66 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIR-EAGAVKARKSRKHATSDWM-EIEKQRGISVTSSVM-------------QF 66 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcc-cCceecccccCCCccCCCc-HHHHhCCCCeEEEEE-------------EE
Confidence 37799999999999999999986543211 111111100 000000000 111122333221110 11
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhh--cCCeeEEEEccCCCCCc-
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~- 169 (403)
.+.++.+.|+||||...+....... ....+.+++|+|+..+ +.....+..+.. ..+ .-+++||+|....
T Consensus 67 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 67 EYRDCVINLLDTPGHEDFSEDTYRT------LTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred eeCCEEEEEEECCCchHHHHHHHHH------HHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 2468999999999975432222211 1234889999999654 222222222222 233 4588999996543
Q ss_pred -hhHHHHHHHHhCCCeE----EeeccCCcCC---CCCCCchhhhhhhcCC--ccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657 170 -GGAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMAGRILGM--GDVLSFVEKAQEVMQQEDAEEMQKKIMS 239 (403)
Q Consensus 170 -~~~~~~~~~~~g~pi~----fig~ge~v~~---l~~f~~~~~~~r~lG~--~dv~~l~e~~~e~~~~~~~~~~~~~~~~ 239 (403)
...+..+.+.++.++. +++.++.+.. +-......+.. ..|- -....+-+...|.+.+.+.+.+.+++..
T Consensus 140 ~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~ 218 (267)
T cd04169 140 PLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDELGGDLAEQLREE 218 (267)
T ss_pred HHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhcCHHHHHHHhCC
Confidence 2335667777887654 2333333221 11000000100 0000 0000000011134444445555555556
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 015657 240 ANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 240 ~~~~~edl~~ql~~~~k~g~ 259 (403)
.+++.+++.+.++.....|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (267)
T cd04169 219 LELLEGAGPEFDQEAFLAGE 238 (267)
T ss_pred CccchhhhHHHhHHHHHcCC
Confidence 67999998888888777664
No 114
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.97 E-value=2.1e-08 Score=108.58 Aligned_cols=173 Identities=24% Similarity=0.277 Sum_probs=102.2
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
+.++|+|. +|+|||+++..|+.+|.++|++|.++..+...|......... +..+......+.+.+.+..+.
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~--------~~~~~~~~~~~~I~~~~~~l~ 74 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEAL--------LASGQLDELLEEIVARYHALA 74 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHH--------HhccCChHHHHHHHHHHHHhc
Confidence 45788888 999999999999999999999999877554433322222110 011111122344455566653
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHH----HHh--hhcCCeeEEEEcc--C
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV----TTF--NIEIGITGAILTK--L 164 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~----~~~--~~~~~i~GvIlNk--~ 164 (403)
.+||++|||+++....+........++.+.+. .++++|+++. +..++.+.+ ..+ .....+.|+|+|+ +
T Consensus 75 -~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~-~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v 152 (684)
T PRK05632 75 -KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG-AEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNA 152 (684)
T ss_pred -cCCCEEEEeCcCCCCcCcccCchHHHHHHHhC-CCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCC
Confidence 78999999999765432111112245566665 7999999884 322333322 233 2457899999999 5
Q ss_pred CCCCchhHHHHH---------------HHHhCCCeEEeeccCCcCCCCC
Q 015657 165 DGDSRGGAALSV---------------KEVSGKPIKLVGRGERMEDLEP 198 (403)
Q Consensus 165 D~~~~~~~~~~~---------------~~~~g~pi~fig~ge~v~~l~~ 198 (403)
+..........+ ....+.++.++|..|..+.+..
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~ 201 (684)
T PRK05632 153 PVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIA 201 (684)
T ss_pred CHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCC
Confidence 544222211222 0112334445888887776653
No 115
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.96 E-value=9.1e-09 Score=81.86 Aligned_cols=69 Identities=36% Similarity=0.515 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
+++++|.+|+||||++.+|+..|++.|++|+++|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4678899999999999999999999999999998
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
|++|+|+++........ .......++.+++++++.
T Consensus 35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence 99999999987643211 011122347788888773
No 116
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.89 E-value=1.4e-08 Score=91.96 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=86.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC--CC-HHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE--VK-PSQIAKQGLEEA 93 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~--~~-~~~~~~~~l~~~ 93 (403)
+++++|.-||||||+..+|.. ....|.++.+|-+|.-... +|.-. + ...++++...... .. ....+...+..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~-iD~~~-l-~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVN-IDAEL-L-QEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTH-HHHHH-H-HTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccc-cchhh-h-cccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 678999999999999999998 6677999999999865544 33321 1 2235555544321 11 112233444444
Q ss_pred Hh-C--CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEccCCCCCc
Q 015657 94 KK-K--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR 169 (403)
Q Consensus 94 ~~-~--~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk~D~~~~ 169 (403)
.. . .+|+|||++.|..+. ..++..-..+...+..+.++.|+|+..-.........+.+++.. .-||+||+|....
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p-~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADP-APLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGG-GGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred HHhcCCCcCEEEECCcccccc-chhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh
Confidence 32 3 579999999995543 33322234455556668899999994432111222222333332 3489999997644
Q ss_pred h
Q 015657 170 G 170 (403)
Q Consensus 170 ~ 170 (403)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 117
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.89 E-value=6.1e-08 Score=89.78 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=82.6
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC--C-CHHHHHH
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE--V-KPSQIAK 87 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~--~-~~~~~~~ 87 (403)
.++++++|.++|..|+||||+..+|+..+.. +.+|.++..|.......+.+. ..+.+++..... . .......
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~----~~~~~~~~l~~gcic~~~~~~~~ 92 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLR----KYGAPAIQINTGKECHLDAHMVA 92 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHH----HcCCcEEEEcCCCcccCChHHHH
Confidence 4567899999999999999999999988753 579999999976432222232 223333332221 1 1111233
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCC
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.++..+...++|+|||||.|.+.... .+ .+.....+.|+|+..+..... ....+. ...-+++||.|.
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~~~-------~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl 160 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVCPA-------DF--DLGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADL 160 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCCCc-------cc--ccccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHc
Confidence 45555533478999999999543211 01 112244567888754432211 111111 123489999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 161 ~~ 162 (207)
T TIGR00073 161 AE 162 (207)
T ss_pred cc
Confidence 53
No 118
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.89 E-value=4.8e-08 Score=92.27 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=37.9
Q ss_pred EEEEE-EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 16 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 16 ~iI~v-~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
+++++ .|+||+||||++.+||.+++++|++|+++|+|++.+..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 34444 48899999999999999999999999999999998754
No 119
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.88 E-value=9.3e-09 Score=92.95 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=95.7
Q ss_pred CCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-C--CHHHHHH
Q 015657 12 KSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-V--KPSQIAK 87 (403)
Q Consensus 12 ~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~--~~~~~~~ 87 (403)
..+| ..|-+.|++||||||+..++...|+.+ +++.+|..|.+.....+.+... .+.+++...+. . .+.....
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~ 84 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNL 84 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHH
Confidence 3455 788889999999999999999999987 9999999999874443444321 56666654433 2 2566666
Q ss_pred HHHHHHHh--CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 88 QGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 88 ~~l~~~~~--~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
.+++++.. .+.|++||++.|.+.... ..++ ...-.++|+|.+.|.+.-...-..-- .-.-+|+||.|
T Consensus 85 ~ai~~l~~~~~~~Dll~iEs~GNL~~~~--sp~L-------~d~~~v~VidvteGe~~P~K~gP~i~--~aDllVInK~D 153 (202)
T COG0378 85 EAIEELVLDFPDLDLLFIESVGNLVCPF--SPDL-------GDHLRVVVIDVTEGEDIPRKGGPGIF--KADLLVINKTD 153 (202)
T ss_pred HHHHHHhhcCCcCCEEEEecCcceeccc--Ccch-------hhceEEEEEECCCCCCCcccCCCcee--EeeEEEEehHH
Confidence 77777652 237999999999654210 0111 11356889998777654433111110 11238999999
Q ss_pred CCCchhH
Q 015657 166 GDSRGGA 172 (403)
Q Consensus 166 ~~~~~~~ 172 (403)
.....+.
T Consensus 154 La~~v~~ 160 (202)
T COG0378 154 LAPYVGA 160 (202)
T ss_pred hHHHhCc
Confidence 7765544
No 120
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.83 E-value=1.3e-07 Score=102.81 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=113.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..+.|.|+++|..++||||++..|........ +..-++ .. ....|.. ......|+.+.... .
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~~~~~--~g-~~~~D~~-~~e~~rgiti~~~~-------------~ 68 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIH-KIGEVH--DG-AATMDWM-EQEKERGITITSAA-------------T 68 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCcc-cccccc--CC-ccccCCC-HHHHhcCCCEecce-------------E
Confidence 44578899999999999999999986443211 110000 00 0000100 01112233222111 1
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.++.+++|||||...+..... .... ..|.+++|+|+..+ ......+.... ...++ -+++||+|...
T Consensus 69 ~~~~~~~~i~liDTPG~~~~~~~~~----~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 141 (689)
T TIGR00484 69 TVFWKGHRINIIDTPGHVDFTVEVE----RSLR--VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKTG 141 (689)
T ss_pred EEEECCeEEEEEECCCCcchhHHHH----HHHH--HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 1124678999999999865322221 1111 23889999999654 11122222222 23333 48999999653
Q ss_pred --chhHHHHHHHHhCCCeE----EeeccCCcCCC-CC------CCch---------hhhhhhcCCccHHHHHHHHHHHhh
Q 015657 169 --RGGAALSVKEVSGKPIK----LVGRGERMEDL-EP------FYPD---------RMAGRILGMGDVLSFVEKAQEVMQ 226 (403)
Q Consensus 169 --~~~~~~~~~~~~g~pi~----fig~ge~v~~l-~~------f~~~---------~~~~r~lG~~dv~~l~e~~~e~~~ 226 (403)
.......+.+.++.... +++....+..+ .. +++. .+.+.. ...+.++++.+.|.+.
T Consensus 142 ~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~e~v~ 219 (689)
T TIGR00484 142 ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDL--LEQAKELRENLVEAVA 219 (689)
T ss_pred CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHH--HHHHHHHHHHHHHHHH
Confidence 23344556666554321 22222222110 00 0000 000000 0223456666666666
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657 227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~ 259 (403)
+.+++.+.+++...+++.+++.+.++.....+.
T Consensus 220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~ 252 (689)
T TIGR00484 220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCE 252 (689)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Confidence 666666777777668999999988888655443
No 121
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.82 E-value=9.4e-09 Score=97.41 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=28.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 20 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 20 v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
|+|+.||||||++..+..++...|++|.+|..||..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 579999999999999999999999999999999754
No 122
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.80 E-value=1.1e-07 Score=84.45 Aligned_cols=144 Identities=18% Similarity=0.245 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-------CCCHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-------EVKPSQIAKQG 89 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-------~~~~~~~~~~~ 89 (403)
+++++|..|+||||+...++... .|+++.++..|..... ++..... ..+.+++.... ...-...+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~-~d~~~~~--~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVG-IDNQLVV--DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccc-hhHHHHh--CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 57899999999999999887653 4889988887754333 2222111 23334444332 11222233333
Q ss_pred HHHH--HhCCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEcc
Q 015657 90 LEEA--KKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 163 (403)
Q Consensus 90 l~~~--~~~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk 163 (403)
+..+ ...++|+|+|||||..... .+...+ ..+......+.++.|+|+............+.+++.. .-||+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 3332 1247899999999987532 233221 1233344567889999985443332222222233322 3389999
Q ss_pred CCC
Q 015657 164 LDG 166 (403)
Q Consensus 164 ~D~ 166 (403)
+|.
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 983
No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.80 E-value=5.8e-08 Score=96.68 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=80.5
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----HH---------HHHHhhhccCCceEeC
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----ID---------QLVILGEQVGVPVYTA 76 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----~~---------~l~~~~~~~gv~v~~~ 76 (403)
+..++.+++++|+.+|||||+++-||..+-.+|++|.++|+|+-.+.. +. .+..+.......+-..
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~i 148 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSI 148 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEecc
Confidence 456678899999999999999999999999999999999999855332 10 1111111111111111
Q ss_pred CCCCCHH---HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 77 GTEVKPS---QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 77 ~~~~~~~---~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
.+...+. ..+.++++.++ +..|++||||+|.+.-.. .+.-...+..+++|+.++.+=++
T Consensus 149 sP~~~~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~~-g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 149 SPQGFPGRYIAGVARLVDLAK-KEADFILIDTDGWIKGWG-GLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CCCCChHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCch-HHHHHHHHHhhcCCCEEEEeccc
Confidence 1122222 33456667775 347999999999986422 23344566777788877776444
No 124
>PRK00007 elongation factor G; Reviewed
Probab=98.78 E-value=4.3e-07 Score=98.77 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=113.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..+.+.|+++|..++||||++..|........ +..-++.. ....|.. ......|+.+.....
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~---~~~~D~~-~~E~~rg~ti~~~~~------------- 68 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDG---AATMDWM-EQEQERGITITSAAT------------- 68 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC---cccCCCC-HHHHhCCCCEeccEE-------------
Confidence 34568899999999999999999986554211 11011100 0000110 011222333222111
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.++.+.+|||||...+.. ++..... ..|.+++|+|+..+ ......+... ....++ -+++||+|...
T Consensus 69 ~~~~~~~~~~liDTPG~~~f~~----ev~~al~--~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~ 141 (693)
T PRK00007 69 TCFWKDHRINIIDTPGHVDFTI----EVERSLR--VLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMDRTG 141 (693)
T ss_pred EEEECCeEEEEEeCCCcHHHHH----HHHHHHH--HcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 1124688999999999754322 2222222 23788999999544 1222222222 223444 38999999653
Q ss_pred --chhHHHHHHHHhCCCeE----EeeccCCc---CCCCCCCchhhhhhh-------c-----CCccHHHHHHHHHHHhhH
Q 015657 169 --RGGAALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRMAGRI-------L-----GMGDVLSFVEKAQEVMQQ 227 (403)
Q Consensus 169 --~~~~~~~~~~~~g~pi~----fig~ge~v---~~l~~f~~~~~~~r~-------l-----G~~dv~~l~e~~~e~~~~ 227 (403)
.......+.+.++.... +++....+ .++..+....+.+.. . ....+.++++.+.+.+.+
T Consensus 142 ~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 221 (693)
T PRK00007 142 ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAE 221 (693)
T ss_pred CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHc
Confidence 22344556666665321 22222221 111100000000000 0 001233555666666666
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 228 EDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 228 ~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
.+++.+.+++...+++.+++.+.++.....|
T Consensus 222 ~dd~lle~yle~~~l~~~~l~~~l~~~~~~~ 252 (693)
T PRK00007 222 ADEELMEKYLEGEELTEEEIKAALRKATIAN 252 (693)
T ss_pred cCHHHHHHHhCcCCCCHHHHHHHHHHHHhcC
Confidence 6666677777767899999999988776654
No 125
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.76 E-value=4.6e-08 Score=87.10 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=43.3
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
...++.+|+++|++||||||+|.+|...|.++|++|.++|+|..|...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence 356789999999999999999999999999999999999999766443
No 126
>PRK12739 elongation factor G; Reviewed
Probab=98.74 E-value=4.5e-07 Score=98.60 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=112.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..+.+.|+++|+.++||||++..|........ +..-++. +....|.. ......|+.+-....
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~-~~~~v~~---~~~~~D~~-~~E~~rgiti~~~~~------------- 66 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSH-KIGEVHD---GAATMDWM-EQEQERGITITSAAT------------- 66 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcc-ccccccC---CccccCCC-hhHhhcCCCccceeE-------------
Confidence 44678899999999999999999986543211 1111110 00001111 011112222111100
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.++.+++|||||...+ ..+...... ..|.+++|+|+..+. .....+... ....++ -+++||+|...
T Consensus 67 ~~~~~~~~i~liDTPG~~~f----~~e~~~al~--~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~ 139 (691)
T PRK12739 67 TCFWKGHRINIIDTPGHVDF----TIEVERSLR--VLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIG 139 (691)
T ss_pred EEEECCEEEEEEcCCCHHHH----HHHHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 11246889999999997532 222222222 238899999995541 112222222 223444 38999999653
Q ss_pred --chhHHHHHHHHhCCCeE----EeeccCCcCCCCCCCchhhhhhhcCC-----------------ccHHHHHHHHHHHh
Q 015657 169 --RGGAALSVKEVSGKPIK----LVGRGERMEDLEPFYPDRMAGRILGM-----------------GDVLSFVEKAQEVM 225 (403)
Q Consensus 169 --~~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~~~~~~~r~lG~-----------------~dv~~l~e~~~e~~ 225 (403)
.......+.+.++.... +++....+..+. +...+..+.++- ..+..+++.+-+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~v--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 217 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVI--DLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAV 217 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEE--EcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhh
Confidence 23344556666655221 111111110000 000011111110 12234555566666
Q ss_pred hHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657 226 QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~ 259 (403)
.+.+++.+.+++...+++.+++...++.....|.
T Consensus 218 ~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~ 251 (691)
T PRK12739 218 AEVDEELMEKYLEGEEITEEEIKAAIRKATINME 251 (691)
T ss_pred hhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Confidence 6666767777777778999999998887766654
No 127
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.3e-07 Score=101.56 Aligned_cols=220 Identities=21% Similarity=0.209 Sum_probs=126.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC--cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
..+.|.|.++++-.+||||++..|.++-..-.+ +|. +++ +..|+. ......|+.+..+....
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g~----~~~D~~-e~EqeRGITI~saa~s~--------- 70 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DGA----ATMDWM-EQEQERGITITSAATTL--------- 70 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CCC----ccCCCc-HHHHhcCCEEeeeeeEE---------
Confidence 346789999999999999999999877654332 221 111 111111 22334455554432211
Q ss_pred HHHHHhC-CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCC
Q 015657 90 LEEAKKK-NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDG 166 (403)
Q Consensus 90 l~~~~~~-~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~ 166 (403)
.|+ +|.+.||||||...+..+...+|..+ |.+++|+|+..| +.....++......++ .-+++||+|.
T Consensus 71 ----~~~~~~~iNlIDTPGHVDFt~EV~rslrvl------DgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR 140 (697)
T COG0480 71 ----FWKGDYRINLIDTPGHVDFTIEVERSLRVL------DGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDR 140 (697)
T ss_pred ----EEcCceEEEEeCCCCccccHHHHHHHHHhh------cceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccc
Confidence 245 49999999999987766555555433 889999999555 3333334433333322 4489999996
Q ss_pred C--CchhHHHHHHHHhCCCeE----EeeccCCcCC---CC-----CCC---chh---hhhhhcCCccHHHHHHHHHHHhh
Q 015657 167 D--SRGGAALSVKEVSGKPIK----LVGRGERMED---LE-----PFY---PDR---MAGRILGMGDVLSFVEKAQEVMQ 226 (403)
Q Consensus 167 ~--~~~~~~~~~~~~~g~pi~----fig~ge~v~~---l~-----~f~---~~~---~~~r~lG~~dv~~l~e~~~e~~~ 226 (403)
. ........+...++.++. .++..+.+.+ +. .|. ... +.+... +-..++.+.+.+.+.
T Consensus 141 ~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~--~~~~e~r~~~~e~i~ 218 (697)
T COG0480 141 LGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLK--EIAEEAREKLLEALA 218 (697)
T ss_pred cccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHH--hHHHHHHHHHHHHHh
Confidence 5 344555667777777443 3344222222 00 111 000 000111 111345556666665
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657 227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~ 259 (403)
+.+.+.+..++...+++.+++.+.++.-...+.
T Consensus 219 e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~ 251 (697)
T COG0480 219 EFDEELMEKYLEGEEPTEEEIKKALRKGTIAGK 251 (697)
T ss_pred hcCHHHHHHHhcCCCccHHHHHHHHHHhhhccc
Confidence 555444455555557999999999998887743
No 128
>PRK00089 era GTPase Era; Reviewed
Probab=98.72 E-value=1.3e-07 Score=92.05 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.-+|+++|.+||||||+...|. |.++.++...++.... ... .++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~~--------~i~--~i~~------------------ 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTRH--------RIR--GIVT------------------ 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCCCCCcccc--------cEE--EEEE------------------
Confidence 34678999999999999998887 7788766654332110 000 0111
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..+++++++||||.......+-..+. .......+|.+++|+|+.. ..........+...-...-+|+||+|...
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 13578999999997654322221111 1122335688999999954 23333333333321123458999999863
No 129
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.66 E-value=1.6e-07 Score=83.19 Aligned_cols=135 Identities=24% Similarity=0.284 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.|.|||||+-.+|. |.++.+-. -|+. +.....|. +. ..
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n----~pG~-----Tv~~~~g~--~~-------------------~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKVGN----WPGT-----TVEKKEGI--FK-------------------LG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEEEE----STTS-----SSEEEEEE--EE-------------------ET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCceecC----CCCC-----CeeeeeEE--EE-------------------ec
Confidence 37899999999999999888 77754322 1111 11111111 11 14
Q ss_pred CCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh---
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--- 171 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~--- 171 (403)
+..+.+||+||..........|. .+....-.+|-+++|+|+...+........+.+.-.+.-+++||+|...+.+
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE
Confidence 68999999999766432221221 1222233689999999997766666666555544444569999999765443
Q ss_pred HHHHHHHHhCCCeEEe
Q 015657 172 AALSVKEVSGKPIKLV 187 (403)
Q Consensus 172 ~~~~~~~~~g~pi~fi 187 (403)
....+.+.+|+|+.++
T Consensus 126 d~~~Ls~~Lg~pvi~~ 141 (156)
T PF02421_consen 126 DAEKLSERLGVPVIPV 141 (156)
T ss_dssp -HHHHHHHHTS-EEEE
T ss_pred CHHHHHHHhCCCEEEE
Confidence 2456777899998543
No 130
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.64 E-value=5.9e-07 Score=87.03 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=88.6
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC---CCHHHHHH
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAK 87 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~---~~~~~~~~ 87 (403)
...+..++.|+|.+||||||+...|...|... +++.++..|.......+.+ ...+++++..... ......+.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI----~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARI----RATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHH----HhcCCcEEEecCCCCCcCcHHHHH
Confidence 45677899999999999999999999988754 5899999997654322222 2345666554331 22344567
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEccCCC
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDG 166 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk~D~ 166 (403)
+++..+...+.|++|||+.|.+...... ++ .....+.|++...+.+... .+...+.. .-+|+||+|.
T Consensus 175 ~Al~~L~~~~~d~liIEnvGnLvcPa~f-----dl----ge~~~v~vlsV~eg~dkpl---Kyp~~f~~ADIVVLNKiDL 242 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGNLVCPASF-----DL----GEKHKVAVLSVTEGEDKPL---KYPHMFAAASLMLLNKVDL 242 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCCccCCCcc-----ch----hhceeEEEEECccccccch---hccchhhcCcEEEEEhHHc
Confidence 7788887678899999999975332211 11 1122346666654432111 12222222 3489999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 243 l~ 244 (290)
T PRK10463 243 LP 244 (290)
T ss_pred Cc
Confidence 64
No 131
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.64 E-value=1.2e-07 Score=99.59 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=83.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-HHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
.+.+.|+++|+.|+||||++.+|.++...- .+..-|+.-...... .+.. ......|+.+.....
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~~-~~E~~rgiSi~~~~~------------- 72 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDWM-EMEKQRGISVTSSVM------------- 72 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCCc-HHHHhhCCceeeeeE-------------
Confidence 457889999999999999999998644321 111122210000000 0001 111223333322111
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHhh--hcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFN--IEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~~--~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.++.+.|+||||...+.......+ ...+.+++|+|+..+. .....+.... ..++ .-+++||+|...
T Consensus 73 ~~~~~~~~inliDTPG~~df~~~~~~~l------~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~ 145 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHEDFSEDTYRTL------TAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDG 145 (526)
T ss_pred EEEECCEEEEEEECCCchhhHHHHHHHH------HHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccc
Confidence 1113578899999999754332222222 2348999999996541 1112222222 2333 448999999653
Q ss_pred c--hhHHHHHHHHhCCCeE----EeeccCCc
Q 015657 169 R--GGAALSVKEVSGKPIK----LVGRGERM 193 (403)
Q Consensus 169 ~--~~~~~~~~~~~g~pi~----fig~ge~v 193 (403)
. ...+..+.+.++.++. ++|.+..+
T Consensus 146 a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f 176 (526)
T PRK00741 146 REPLELLDEIEEVLGIACAPITWPIGMGKRF 176 (526)
T ss_pred cCHHHHHHHHHHHhCCCCeeEEeccccCCce
Confidence 2 2345667777787543 34544443
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.62 E-value=2.7e-07 Score=89.04 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+||||||+...|. |.++.++..-++... ....++ .. ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~~~~TTr--------~~i~~i--~~-------------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSPKAQTTR--------NRISGI--HT-------------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCCCCCccc--------CcEEEE--EE-------------------cC
Confidence 37889999999999998888 777765543222111 000111 11 13
Q ss_pred CCcEEEEeCCCCccccHHhHHHHH-H-HhhhcCCceEEEEEecccHHHH-HHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELK-D-VKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~-~-i~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
++.++++||||.......+...+. . ....-.+|-+++|+|+...... ......+...-...-+|+||+|....
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH
Confidence 567999999997643222211111 1 1122346889999999533211 12222222222234589999997543
No 133
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.59 E-value=1.8e-07 Score=82.65 Aligned_cols=44 Identities=39% Similarity=0.536 Sum_probs=38.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~ 57 (403)
++.+|+++|++||||||+|..|...|...|++|.++|.|..|..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 47899999999999999999999999999999999999965543
No 134
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.57 E-value=1.3e-07 Score=91.38 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC----hhhHHHHHHhhhccCCc---eEeCCCCC--CHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR----PAAIDQLVILGEQVGVP---VYTAGTEV--KPSQIA 86 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r----p~~~~~l~~~~~~~gv~---v~~~~~~~--~~~~~~ 86 (403)
++|.|+|.+||||||++.+|+..|+++| +|.+|+.|+.. ++. |.... ...|.+ +++..... .....+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~-Ds~~~--~~aGa~~v~~~s~~~~~~~~~~~~l 77 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGT-DTGRH--FDAGADVVYGLTDGEWVASGRDRSL 77 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCC-CcHHH--HHCCCcEEEEecCCeEEEEecCCCH
Confidence 5899999999999999999999999999 89999999854 331 11111 111211 11110000 001123
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccc
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~ 111 (403)
.+.+..+. .++|+||||+......
T Consensus 78 ~~~l~~l~-~~~D~vlVEG~k~~~~ 101 (274)
T PRK14493 78 DDALDDLA-PGMDYAVVEGFKDSRL 101 (274)
T ss_pred HHHHHhhC-cCCCEEEEECCCCCCC
Confidence 44455553 5799999999998654
No 135
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.2e-07 Score=88.83 Aligned_cols=158 Identities=24% Similarity=0.340 Sum_probs=101.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh---CCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~---~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
.+.|..+|..+|-+||||++.+|..+-.. .| -|.+-- .+.+..|++ ...++.|+.+..+--
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSVM---------- 74 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWM-EIEKQRGISVTSSVM---------- 74 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHH-HHHHhcCceEEeeEE----------
Confidence 35678899999999999999999875432 22 111111 122223444 566778888765421
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLD 165 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D 165 (403)
.+...++-+.|+||||.-.+.++....|.++ |..++|+|+.-| .....+..-.. ..++|. -++||+|
T Consensus 75 ---qF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAv------DsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlD 144 (528)
T COG4108 75 ---QFDYADCLVNLLDTPGHEDFSEDTYRTLTAV------DSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLD 144 (528)
T ss_pred ---EeccCCeEEeccCCCCccccchhHHHHHHhh------heeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccc
Confidence 1113578899999999887777776666555 888999999655 33333333332 334443 6889999
Q ss_pred CCCch--hHHHHHHHHhCC---CeE-EeeccCCcCC
Q 015657 166 GDSRG--GAALSVKEVSGK---PIK-LVGRGERMED 195 (403)
Q Consensus 166 ~~~~~--~~~~~~~~~~g~---pi~-fig~ge~v~~ 195 (403)
...+. ..+.++.+.+++ |+. +||.|.....
T Consensus 145 R~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~G 180 (528)
T COG4108 145 REGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKG 180 (528)
T ss_pred cccCChHHHHHHHHHHhCcceecccccccCCcccce
Confidence 77554 455667776665 554 5777766544
No 136
>PRK13351 elongation factor G; Reviewed
Probab=98.56 E-value=4.2e-06 Score=91.09 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
...+.|+++|..|+||||++..|......-. +..-++....-.+.. . .....++.+.... ..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~-~~~~v~~~~~~~d~~-~---~e~~r~~ti~~~~-------------~~ 67 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIH-KMGEVEDGTTVTDWM-P---QEQERGITIESAA-------------TS 67 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCcc-ccccccCCcccCCCC-H---HHHhcCCCcccce-------------EE
Confidence 3567899999999999999999886432110 000111000000000 0 0011222211110 01
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC-
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS- 168 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~- 168 (403)
+.+.++.+.|+||||...+.. +...... ..|.+++|+|+..+ ........... ...++ -+++||+|...
T Consensus 68 ~~~~~~~i~liDtPG~~df~~----~~~~~l~--~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~ 140 (687)
T PRK13351 68 CDWDNHRINLIDTPGHIDFTG----EVERSLR--VLDGAVVVFDAVTGVQPQTETVWRQADRYGIPR-LIFINKMDRVGA 140 (687)
T ss_pred EEECCEEEEEEECCCcHHHHH----HHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEECCCCCCC
Confidence 123578999999999754322 2222222 23889999999544 12222222222 23333 48999999653
Q ss_pred -chhHHHHHHHHhCCCeEE--e--eccCCcCC---CC-----CCC-------------chhhhhhhcCCccHHHHHHHHH
Q 015657 169 -RGGAALSVKEVSGKPIKL--V--GRGERMED---LE-----PFY-------------PDRMAGRILGMGDVLSFVEKAQ 222 (403)
Q Consensus 169 -~~~~~~~~~~~~g~pi~f--i--g~ge~v~~---l~-----~f~-------------~~~~~~r~lG~~dv~~l~e~~~ 222 (403)
....+.++...++.++.. + +.+..+.. +. .|. |..+.+ .+..+++.+.
T Consensus 141 ~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~ 214 (687)
T PRK13351 141 DLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLE------EVEEAREKLI 214 (687)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHH------HHHHHHHHHH
Confidence 345556777777775431 1 11111100 00 000 111111 1224444555
Q ss_pred HHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 223 EVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 223 e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
+.+.+.+.+.+.+++...+++.+++...++....++
T Consensus 215 e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~ 250 (687)
T PRK13351 215 EALAEFDDELLELYLEGEELSAEQLRAPLREGTRSG 250 (687)
T ss_pred HHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 555555555566666666899999999999887653
No 137
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.52 E-value=2.5e-06 Score=74.02 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+|+||||++..|. |.++..+..++.... ....... .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~~-----------~~~~~~~------------------~ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR-----------NRIRGIY------------------T 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCcee-----------ceEEEEE------------------E
Confidence 4568999999999999998887 666665543322100 0000000 0
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..+++++++||||...........+. ........+.+++|+|+... +........+...-....+|+||+|...
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 13578999999997643221111110 11122345788999999543 2222222323222233459999999763
No 138
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.51 E-value=6.2e-06 Score=76.07 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=77.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe---CCC-----CCCHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT---AGT-----EVKPSQIA 86 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~---~~~-----~~~~~~~~ 86 (403)
|..+.++|++|+||||+...+...+... .++.++..|.+.....+.+...+....-.+.. .+. +.+....
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMN- 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHH-
Confidence 4578999999999999999999887653 56888888877643322222221100001111 111 1122111
Q ss_pred HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEcc
Q 015657 87 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 163 (403)
Q Consensus 87 ~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk 163 (403)
..++..+. ...+|+|||+|.|..-. ..... . + .+.++.|+|+..+.+.... ....+.. .-+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~-~~~~~---~----l-~~~~i~vvD~~~~~~~~~~---~~~qi~~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLS-ATFSP---E----L-ADLTIFVIDVAAGDKIPRK---GGPGITRSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcc-cccch---h----h-hCcEEEEEEcchhhhhhhh---hHhHhhhccEEEEEh
Confidence 22223321 24699999999994211 11111 1 1 2668999999766553322 1122222 3489999
Q ss_pred CCCCC
Q 015657 164 LDGDS 168 (403)
Q Consensus 164 ~D~~~ 168 (403)
+|...
T Consensus 147 ~d~~~ 151 (199)
T TIGR00101 147 IDLAP 151 (199)
T ss_pred hhccc
Confidence 99763
No 139
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.49 E-value=2.4e-06 Score=84.39 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=89.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-------CCCCHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-------TEVKPSQIA 86 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-------~~~~~~~~~ 86 (403)
+..+.+++|.-||||||+..+|... ..|.+++++-.|.-.- .+|.... . ..+..++... ...+-...+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v-~iD~~ll-~-~~~~~v~eL~~GCiCCs~~~~l~~~l 77 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEV-SVDDQLI-G-DRATQIKTLTNGCICCSRSNELEDAL 77 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCc-cccHHHH-h-CcCceEEEECCCEEEEccCchHHHHH
Confidence 3467899999999999999998854 3589999998884332 2332211 1 1122222221 122223333
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEE
Q 015657 87 KQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAI 160 (403)
Q Consensus 87 ~~~l~~~~~--~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvI 160 (403)
.+.+..... ..+|+|||+|.|... ...++..+ ..+...+.-+.++.|||+............+..++.. .-||
T Consensus 78 ~~l~~~~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 78 LDLLDNLDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_pred HHHHHHHhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence 333333221 159999999999754 22333332 1222333347789999995443322211122222222 3489
Q ss_pred EccCCCCCchhHHHHHHHHhC
Q 015657 161 LTKLDGDSRGGAALSVKEVSG 181 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g 181 (403)
+||+|.......+.......+
T Consensus 157 lnK~Dl~~~~~~~~~~l~~ln 177 (318)
T PRK11537 157 LTKTDVAGEAEKLRERLARIN 177 (318)
T ss_pred EeccccCCHHHHHHHHHHHhC
Confidence 999997654444444444444
No 140
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.49 E-value=1.7e-06 Score=81.92 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=50.6
Q ss_pred CcEEEEeCCCCccc---c--HHhHHHHHH-HhhhcC-C-ceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 98 VDVVIVDTAGRLQI---D--KAMMDELKD-VKRVLN-P-TEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 98 ~D~VIIDtpg~l~~---d--~~l~~el~~-i~~~~~-~-~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.|+.|||+||.... + ......+.. +...+. + +-+++|+|+.. .+++...++.+.......-+|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 79999999999743 1 222222222 222222 3 35678888743 356667777777666666689999998
Q ss_pred CCchhHHHHHHH
Q 015657 167 DSRGGAALSVKE 178 (403)
Q Consensus 167 ~~~~~~~~~~~~ 178 (403)
..++..+..+..
T Consensus 205 ~~~~~~~~~~~~ 216 (240)
T smart00053 205 MDEGTDARDILE 216 (240)
T ss_pred CCccHHHHHHHh
Confidence 776655444443
No 141
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.48 E-value=1.2e-06 Score=92.16 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=78.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
.+.+.|+++|++|+||||++.+|..+...- .+..-|+.+-. +....+.. ......|+.+......
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~~-~~E~~rgisi~~~~~~------------ 74 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDWM-EMEKQRGISITTSVMQ------------ 74 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCCC-HHHHhcCCcEEEEEEE------------
Confidence 457889999999999999999987654211 11112222110 00111111 1222334443221110
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-H-HHHHHHHHhhhcCCeeEEEEccCCCCC-
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTTFNIEIGITGAILTKLDGDS- 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~-~~~~~~~~~~~~~~i~GvIlNk~D~~~- 168 (403)
+.+.++.+.|+||||...+....... ...+|.+++|+|+..+ + ............-...-+++||+|...
T Consensus 75 -~~~~~~~inliDTPG~~df~~~~~~~------l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 75 -FPYRDCLVNLLDTPGHEDFSEDTYRT------LTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred -EeeCCeEEEEEECCChhhHHHHHHHH------HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC
Confidence 11357899999999975332222221 1235899999999654 1 222222222211223458999999753
Q ss_pred -chhHHHHHHHHhCCC
Q 015657 169 -RGGAALSVKEVSGKP 183 (403)
Q Consensus 169 -~~~~~~~~~~~~g~p 183 (403)
.......+...++.+
T Consensus 148 ~~~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 148 DPLELLDEVENELKIN 163 (527)
T ss_pred CHHHHHHHHHHHhCCC
Confidence 233445566666654
No 142
>PRK15494 era GTPase Era; Provisional
Probab=98.46 E-value=2.6e-06 Score=84.95 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+||||||+...|. |.++.++..-++.. ..... .++. .
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~k~~tT--------r~~~~--~~~~-------------------~ 97 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRII------GEKLSIVTPKVQTT--------RSIIT--GIIT-------------------L 97 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHh------CCceeeccCCCCCc--------cCcEE--EEEE-------------------e
Confidence 368999999999999998886 66665443221110 00000 1111 1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEecccH-HHH-HHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG-QEA-AALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~g-~~~-~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
+++.++++||||.......+...+.. +.....+|.+++|+|+... ... ...+......-.+.-+|+||+|...
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 46789999999975322111111111 1123356889999998432 111 1222222221122347899999753
No 143
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.43 E-value=3.5e-06 Score=77.45 Aligned_cols=123 Identities=21% Similarity=0.211 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
.|+++|..++||||++..|.....+.|..-... ..| .. ......|+.+..... .+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d--------~~-~~E~~rg~Ti~~~~~-------------~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEID--------KA-PEEKARGITINTAHV-------------EYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhccccccccccccc--------CC-hhhhhcCccEEeeee-------------Eec
Confidence 488999999999999999998776555321100 111 10 011122333222111 112
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+++.+++|||||...+ ..++. ......|.+++|+|+..+ ......+.... ...+..-+++||+|..
T Consensus 62 ~~~~~i~~iDtPG~~~~----~~~~~--~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 62 TANRHYAHVDCPGHADY----IKNMI--TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCCeEEEEEECcCHHHH----HHHHH--HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 35678999999997532 22221 122245889999999543 22222222222 1222233778999974
No 144
>PRK12740 elongation factor G; Reviewed
Probab=98.39 E-value=3e-06 Score=91.95 Aligned_cols=207 Identities=16% Similarity=0.211 Sum_probs=102.4
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcE
Q 015657 21 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 100 (403)
Q Consensus 21 ~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~ 100 (403)
+|+.++||||++.+|+.... ..+..-+.|.. ....+.+ ......++.+.... ..+.+.++++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g---~i~~~~~~~~~-~~~~d~~-~~e~~rgiTi~~~~-------------~~~~~~~~~i 62 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTG---AIHRIGEVEDG-TTTMDFM-PEERERGISITSAA-------------TTCEWKGHKI 62 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcC---CCccCccccCC-cccCCCC-hHHHhcCCCeeece-------------EEEEECCEEE
Confidence 48899999999999986632 21111111110 0111111 11122333332111 1112468999
Q ss_pred EEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhh-hcCCeeEEEEccCCCCCc--hhHHHH
Q 015657 101 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSR--GGAALS 175 (403)
Q Consensus 101 VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlNk~D~~~~--~~~~~~ 175 (403)
+||||||...+..... .. ...+|.+++|+|+..+. .......... ...+ .-+|+||+|.... ......
T Consensus 63 ~liDtPG~~~~~~~~~----~~--l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~~~~~~ 135 (668)
T PRK12740 63 NLIDTPGHVDFTGEVE----RA--LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADFFRVLAQ 135 (668)
T ss_pred EEEECCCcHHHHHHHH----HH--HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHH
Confidence 9999999754322222 11 12358999999995442 1222222222 2223 4479999996532 234456
Q ss_pred HHHHhCCCeEEe--e--ccCCcCCCC-CCC-----------------chhhhhhhcCCccHHHHHHHHHHHhhHhHHHHH
Q 015657 176 VKEVSGKPIKLV--G--RGERMEDLE-PFY-----------------PDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233 (403)
Q Consensus 176 ~~~~~g~pi~fi--g--~ge~v~~l~-~f~-----------------~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~ 233 (403)
+.+.++.|+... . .+..+..+. .+. |..+ ...+..+++.+-+.+.+.+++.+
T Consensus 136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~e~~~~~d~~~l 209 (668)
T PRK12740 136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAEL------LDRAEEAREELLEALAEFDDELM 209 (668)
T ss_pred HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHH------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 666777765311 1 111110000 000 1011 01122334444455545555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 234 QKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 234 ~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
.+++...+++.+++...++....++
T Consensus 210 e~~l~~~~l~~~~~~~~~~~~~~~~ 234 (668)
T PRK12740 210 EKYLEGEELSEEEIKAGLRKATLAG 234 (668)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 5666556799999999988776544
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.37 E-value=5.9e-06 Score=69.10 Aligned_cols=91 Identities=29% Similarity=0.310 Sum_probs=62.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
+..++++|++|+||||++..|+..+...++.+.+++++........... ....................+..++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999887778999998865543322211 1111111223344555566666665
Q ss_pred hCCCcEEEEeCCCCccc
Q 015657 95 KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~ 111 (403)
...++++|||.+..+..
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 55579999999998764
No 146
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.35 E-value=3.2e-06 Score=75.89 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+++.+|+++|.+||||||++..|+..+...|.++.+++.|..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4578999999999999999999999999889999999999654
No 147
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.8e-06 Score=80.85 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=40.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
....+.|++.|+||+||||.++.||..|++-+.+|++|..||.+
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 44568899999999999999999999999999999999999876
No 148
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.7e-06 Score=83.97 Aligned_cols=115 Identities=23% Similarity=0.438 Sum_probs=79.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+..+|+|.|-||.||||+...++..+++++ +|++|.+. .+..|++..+++.+++.. +....+...+.+.+..+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~RL~~~~~--~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRADRLGLPTN--NLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHHHhCCCcc--ceEEehhcCHHHHHHHH
Confidence 457888899999999999999999999998 99999976 556677777777776531 11222333345555666
Q ss_pred HhCCCcEEEEeC------------CCCccccHHhHHHHHHHhhhcCCceEEEEEe
Q 015657 94 KKKNVDVVIVDT------------AGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 136 (403)
Q Consensus 94 ~~~~~D~VIIDt------------pg~l~~d~~l~~el~~i~~~~~~~~vllVvd 136 (403)
...++|++|||. ||....-.+...+|..+++.-+ ..+++|-.
T Consensus 165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~-i~~fiVGH 218 (456)
T COG1066 165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKN-IAIFIVGH 218 (456)
T ss_pred HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcC-CeEEEEEE
Confidence 667899999997 3333334456666666666654 44455543
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1e-05 Score=71.19 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV 49 (403)
+.-|.++|.|||||||++.+++..|...|++|.=+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 44589999999999999999999999999998733
No 150
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.32 E-value=8.3e-07 Score=80.68 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.+.|+++|..|+||||++..|.............-..+ ........-........+...... .
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ti~~~~~~~~--------------~- 65 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKN-AFLDKHPEERERGITIDLSFISFE--------------K- 65 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHH-CHHHSSHHHHHCTSSSSSEEEEEE--------------B-
T ss_pred CEEEEEEECCCCCCcEeechhhhhhcccccccccccccc-ccccccchhhhccccccccccccc--------------c-
Confidence 457899999999999999999997664322111000000 000000000011111111122111 0
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
....+.+.+|||||... ...++... ...+|.+++|+|+..+ ......+... ...++ .-+++||+|..
T Consensus 66 ~~~~~~i~~iDtPG~~~----f~~~~~~~--~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 66 NENNRKITLIDTPGHED----FIKEMIRG--LRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI 135 (188)
T ss_dssp TESSEEEEEEEESSSHH----HHHHHHHH--HTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred cccccceeecccccccc----eeecccce--ecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence 13678999999999753 22322222 2345899999999543 2222223222 22344 55899999987
No 151
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.32 E-value=4.5e-06 Score=77.02 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh-h--ccCCceEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG-E--QVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~-~--~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
+.+++.++|++|+|||+++..++....+.|.+|++++++-+.+..+.+..... + ..++.++...........+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 35899999999999999999999999888999999999854444333321100 0 12223332211111111233333
Q ss_pred HHHHhCCCcEEEEeCCCCc
Q 015657 91 EEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l 109 (403)
..+.+..+++||||+-..+
T Consensus 91 ~~~~~~~~~lvVIDSis~l 109 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTAL 109 (209)
T ss_pred HHHhhcCccEEEEeCcHHH
Confidence 3344446888888886543
No 152
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.32 E-value=9.7e-06 Score=70.47 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=58.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHh---hhccCCceEeCCCCCCHHH-HHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL---GEQVGVPVYTAGTEVKPSQ-IAKQGLEE 92 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~---~~~~gv~v~~~~~~~~~~~-~~~~~l~~ 92 (403)
+++|+|++|+||||++..++..+...|.+|++++++.........+... ....+..++.......... ........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 3688999999999999999999999999999999986655443332111 1112233333322222222 22222333
Q ss_pred HHhCCCcEEEEeCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l 109 (403)
+...+++++|||.+..+
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 33467889999988864
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.31 E-value=2.1e-05 Score=71.63 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
.++.+.|+||||...+.. ..... ...++.+++|+|+..+ .......... ....+ .-+++||+|..
T Consensus 63 ~~~~~~l~DtpG~~~~~~----~~~~~--~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHADFGG----EVERV--LSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHHHHH----HHHHH--HHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 467899999999753221 11111 1235888999998542 2222222222 22333 45889999974
No 154
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=7.9e-06 Score=82.71 Aligned_cols=117 Identities=20% Similarity=0.350 Sum_probs=74.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
.+|+++|.|.|||||+-..|+ |.++.+|+-= |+... -.+|. .+++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~---pGvTR----------Dr~y~----------------~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDT---PGVTR----------DRIYG----------------DAEW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeecC---CCCcc----------CCccc----------------eeEE
Confidence 468999999999999999999 9999888721 11100 01111 1124
Q ss_pred CCCcEEEEeCCCCcccc-HHhHHHHHH--HhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQID-KAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d-~~l~~el~~--i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+..+.+|||+|....+ ..+...+.. ...+-.+|-+++|+|+..| ..-..+++.+...-+..-+|+||+|+.
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 57789999999987544 223222222 2223346889999999654 233333444444335566999999987
No 155
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.29 E-value=1.7e-06 Score=88.32 Aligned_cols=168 Identities=24% Similarity=0.379 Sum_probs=102.8
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh---------------HHHH-HHhhhcc----------
Q 015657 17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---------------IDQL-VILGEQV---------- 69 (403)
Q Consensus 17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~---------------~~~l-~~~~~~~---------- 69 (403)
.|++.|. +.+|||++++.|++.|+++|++|. |+++.. ..|+ ..++...
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~-----PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL 77 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVA-----PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL 77 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccC-----CCchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence 5788999 999999999999999999999998 655332 1111 1111110
Q ss_pred -------CCceEeCCCC---CCHHH-----------HHHHHHHHHHhCCCcEEEEeCCCCccc----cHHhHHHHHHHhh
Q 015657 70 -------GVPVYTAGTE---VKPSQ-----------IAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAMMDELKDVKR 124 (403)
Q Consensus 70 -------gv~v~~~~~~---~~~~~-----------~~~~~l~~~~~~~~D~VIIDtpg~l~~----d~~l~~el~~i~~ 124 (403)
+..++..+.. .++.+ .+.+.++.+ ...||+|+++++|.... +.++.. ..+..
T Consensus 78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l-~~~~d~Vv~EGAGSpaEiNlr~~Di~N--m~~a~ 154 (486)
T COG1492 78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL-DREYDVVVIEGAGSPAEINLRDRDIAN--MGVAE 154 (486)
T ss_pred EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh-hhcccEEEEecCCChhhcCcccccccc--eeeeh
Confidence 1122222211 11111 234555555 47899999999998642 111111 11222
Q ss_pred hcCCceEEEEEecccHHHHHHHH---HHh--hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 125 VLNPTEVLLVVDAMTGQEAAALV---TTF--NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 125 ~~~~~~vllVvda~~g~~~~~~~---~~~--~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
..+ .++++|.|-..|-....+. ..+ ..+-.+.|+|+||++++.. ...+..+.+.+|.|+ +|..|..++
T Consensus 155 ~~d-apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~v--lGv~P~~~~ 229 (486)
T COG1492 155 IAD-APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPV--LGVLPYLKD 229 (486)
T ss_pred hcC-CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhhCCee--Eeecccccc
Confidence 232 6889999875442222222 111 2345789999999998753 355667777899999 898888765
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.28 E-value=1.2e-05 Score=71.84 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
|+++|.+|+||||+...|.......++...+.+........ +. ..++...... ..+....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~-------------~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-ER------ERGITIKSGV-------------ATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-HH------HcCCCeecce-------------EEEeeCC
Confidence 78999999999999999886654444444333322111111 11 1111111000 0001136
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
++++++||||........... ...++.+++|+|+..+ .............-...-+++||+|...
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRG------LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHH------HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 789999999965432221111 1245889999998543 2222222222222233458999999764
No 157
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.27 E-value=7e-06 Score=78.81 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+..+++|+|.+|+||||+|..++...+++|.+|++++.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 4588999999999999999999999988999999999983
No 158
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.27 E-value=7.1e-06 Score=73.95 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~ 57 (403)
+++|.|++|+|||+++..++....+.|.+|++++.+.....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~ 41 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEE 41 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHH
Confidence 36889999999999999999999999999999998854333
No 159
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.27 E-value=6.7e-06 Score=76.47 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
+.+++.++|.+|+||||++..+|..++.+|.+|++++++...+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 3588999999999999999999999999999999999985444
No 160
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.26 E-value=7.3e-06 Score=76.65 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=39.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
+..++.++|++|+||||++..++..+++.|.+|++++++...+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHH
Confidence 358999999999999999999999999999999999999433333
No 161
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.24 E-value=7.8e-06 Score=80.57 Aligned_cols=90 Identities=20% Similarity=0.318 Sum_probs=57.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l 90 (403)
+.+++.|+|++|+||||+|..++...++.|.+|++||+.-. .++. .....|++ ++.... ....+.+....
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~----~~~~--~a~~lGvd~~~l~v~~p-~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA----LDPV--YARKLGVDIDNLLVSQP-DTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch----hHHH--HHHHcCCCHHHeEEecC-CCHHHHHHHHH
Confidence 34899999999999999999999999999999999988621 1111 22233332 121211 12223332222
Q ss_pred HHHHhCCCcEEEEeCCCCcc
Q 015657 91 EEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~ 110 (403)
..++...+++||||+...+.
T Consensus 127 ~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHhhccCCcEEEEcchhhhc
Confidence 23344679999999987653
No 162
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.23 E-value=4.1e-05 Score=84.01 Aligned_cols=136 Identities=22% Similarity=0.149 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.++|||||+..+|. |.+.. + .+ ..|..+...... +..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-v-gn---------------~pGvTve~k~g~-------------~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-V-GN---------------WAGVTVERKEGQ-------------FST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-c-CC---------------CCCceEeeEEEE-------------EEc
Confidence 458999999999999998885 33221 1 11 011111100000 012
Q ss_pred CCCcEEEEeCCCCccccH----HhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDK----AMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~----~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
.++++.++||||...... ....|. ......-.+|-+++|+|+...+..........+.-...-+++||+|...+
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 567899999999865421 111111 11111225789999999976544433333333222345589999997533
Q ss_pred h---hHHHHHHHHhCCCeEEe
Q 015657 170 G---GAALSVKEVSGKPIKLV 187 (403)
Q Consensus 170 ~---~~~~~~~~~~g~pi~fi 187 (403)
. .....+.+.+|+|+..+
T Consensus 128 ~~i~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 128 QNIRIDIDALSARLGCPVIPL 148 (772)
T ss_pred cCcHHHHHHHHHHhCCCEEEE
Confidence 2 23455677799998644
No 163
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=98.23 E-value=6.1e-05 Score=74.77 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=99.5
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhh---------------------HHHH----HHhh
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAA---------------------IDQL----VILG 66 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~---------------------~~~l----~~~~ 66 (403)
+.+++.+.|. ||+|=||+|.++|+.++.+ +..|+++|.|.+.-.. .+|. ....
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 4577888766 9999999999999999865 8999999999643111 1111 0111
Q ss_pred hccCCceEeCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--
Q 015657 67 EQVGVPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-- 139 (403)
Q Consensus 67 ~~~gv~v~~~~~~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-- 139 (403)
...+..+++........ ..+.+.++.+ ...||+||+|-|-... +... .+ ....+++++|++...
T Consensus 183 ~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~-~~~~~~vV~Dlp~~~~---~~t~---~v--L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 183 LASGLKLLAAPTELAKNYDLKTGAVERLLDLL-RGSFDFVVVDLPNIWT---DWTR---QV--LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred cCCCceeecCCcchhhhcccccchHHHHHHHh-hccCCeEEEcCCCccc---hHHH---HH--HhcCCeEEEEecccHHH
Confidence 22345555544332211 2234555555 3689999999993222 2111 11 224589999998732
Q ss_pred ---HHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 140 ---GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 140 ---g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
+.+.....+.+...-...-+|+|+++...... ...+.+.++++-
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~-~~dl~~~~~i~~ 300 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE-PSDLEEILGIES 300 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC-HHHHHHHhCCch
Confidence 24444555556555556669999998766555 555666666654
No 164
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.19 E-value=2.2e-05 Score=73.89 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc------c-CCceEeCC------CCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ------V-GVPVYTAG------TEV 80 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~------~-gv~v~~~~------~~~ 80 (403)
+..+++++|.+|+||||++..++....++|.+|++++++-.......++...+-. . .+.++... ...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 4688999999999999999999988878899999999983322222332221100 0 11122111 011
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l 109 (403)
.....+....+.+...+++++|||.+..+
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 12333444444444458999999998843
No 165
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.19 E-value=3.9e-06 Score=74.37 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
|+.++|..||||||++.+|+..|..+|++|.++..|..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 57899999999999999999999999999999987643
No 166
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=78.86 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=89.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-HHHhhhccCCceEe-------CCCCCCHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-LVILGEQVGVPVYT-------AGTEVKPSQIAK 87 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-l~~~~~~~gv~v~~-------~~~~~~~~~~~~ 87 (403)
.+.+++|.=||||||+..+|..... |+|+.++-.+ ++.-.+|. . .-...+..++. .....+-.....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNE-fGEvgID~~~--~l~~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNE-FGEVGIDGGA--LLSDTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEec-CccccccCCC--ccccCCccEEEeCCceEEEeccchhHHHHH
Confidence 4678999999999999999887666 8999888766 33333331 1 00111222222 211112333344
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHH---HHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCe-eEEEEc
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK---DVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGI-TGAILT 162 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~---~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i-~GvIlN 162 (403)
+... . ...+|+|||+|.|.... ...+.... .+...+.-+.++-|||+........ ....+..++.. .-||+|
T Consensus 77 ~L~~-~-~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlN 153 (323)
T COG0523 77 RLLR-R-RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLN 153 (323)
T ss_pred HHHh-c-cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEe
Confidence 4444 3 46799999999997642 22222211 2233334477899999954432222 33333344433 338999
Q ss_pred cCCCCCchh--HHHHHHHHhCCC
Q 015657 163 KLDGDSRGG--AALSVKEVSGKP 183 (403)
Q Consensus 163 k~D~~~~~~--~~~~~~~~~g~p 183 (403)
|+|...... .+.......+..
T Consensus 154 K~Dlv~~~~l~~l~~~l~~lnp~ 176 (323)
T COG0523 154 KTDLVDAEELEALEARLRKLNPR 176 (323)
T ss_pred cccCCCHHHHHHHHHHHHHhCCC
Confidence 999766553 223344445443
No 167
>PRK12736 elongation factor Tu; Reviewed
Probab=98.17 E-value=5.8e-05 Score=76.86 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
++...|+++|+.++||||++..|.......|........ ..+.. ......|+.+-.....
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~------~~d~~-~~E~~rg~T~~~~~~~------------- 69 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYD------SIDAA-PEEKERGITINTAHVE------------- 69 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchh------hhcCC-HHHHhcCccEEEEeeE-------------
Confidence 345668999999999999999998766554432211000 01111 1111223332211110
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
+..+++.+++|||||.. ..+..+ +.....+|.+++|+|+..+ ......+.... ..++..-+++||+|..
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 70 YETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred ecCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 11246789999999953 222222 2222345889999999543 22222222221 2233233679999965
No 168
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.17 E-value=8.8e-05 Score=67.84 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+|+||||+...|. |.++.....+ .+... . ....... ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~--~~~~T-------~--~~~~~~~-----------------~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLS--ASSVT-------K--TCQKESA-----------------VWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccC--CCCcc-------c--ccceeeE-----------------EEC
Confidence 47899999999999999887 5555322211 00000 0 0000000 024
Q ss_pred CCcEEEEeCCCCcccc---HHhHHHHHHHhhh--cCCceEEEEEeccc-HHHHHHHHHH----hhhc-CCeeEEEEccCC
Q 015657 97 NVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT-GQEAAALVTT----FNIE-IGITGAILTKLD 165 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d---~~l~~el~~i~~~--~~~~~vllVvda~~-g~~~~~~~~~----~~~~-~~i~GvIlNk~D 165 (403)
+..++||||||..... .....++...... ..++.+++|+++.. .+.....++. |.+. ....-+++|+.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 6789999999987542 2333333332222 24577899998742 2222223322 3322 244568899998
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
.-.
T Consensus 128 ~l~ 130 (196)
T cd01852 128 DLE 130 (196)
T ss_pred ccC
Confidence 543
No 169
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.15 E-value=1.4e-05 Score=78.90 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=56.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~ 91 (403)
.+++.|.|++|+||||+|..++...++.|.+|++||+.-. +. ... ....|++ ++... .....+.+.....
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~-~~-~~~----a~~lGvd~~~l~v~~-p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA-LD-PVY----AKKLGVDLDNLLISQ-PDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc-HH-HHH----HHHcCCCHHHheecC-CCCHHHHHHHHHH
Confidence 4889999999999999999999999999999999998621 11 111 2222332 11111 1123333322222
Q ss_pred HHHhCCCcEEEEeCCCCc
Q 015657 92 EAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l 109 (403)
.++...+++||||+...+
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 334567999999997755
No 170
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.15 E-value=5.6e-05 Score=65.28 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCC
Q 015657 19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 98 (403)
Q Consensus 19 ~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (403)
+++|.+|+||||+...|+ +.+...+...+. ... ....... ...++
T Consensus 1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~~~--~t~----------~~~~~~~-----------------~~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDTPG--VTR----------DRIYGEA-----------------EWGGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHh------CCcEEeecCCCC--cee----------CceeEEE-----------------EECCe
Confidence 468999999999998887 444433332210 000 0000000 01457
Q ss_pred cEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 99 DVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 99 D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
++.|+||||...........+... ......+.+++|+|+... .........+...-...-+|+||+|.....
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChH
Confidence 899999999865432111111111 112235788999998432 111122222222223445899999976543
No 171
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.14 E-value=3.5e-06 Score=78.25 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=35.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.+|+|+|||||||-+..+...|...|++|.+|..||..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN 42 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence 47889999999999999999999999999999999754
No 172
>PRK04296 thymidine kinase; Provisional
Probab=98.14 E-value=1.5e-05 Score=72.90 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec--cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~--D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+++++|+.|+||||++..++..+..+|++|+++.. |. +... .......|+++... ......+.+....+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~~~~~~-- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIFELIEE-- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHHHHHHh--
Confidence 678999999999999999999999989999999843 42 1111 11223334332210 01122233222222
Q ss_pred HhCCCcEEEEeCCCCcc
Q 015657 94 KKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~ 110 (403)
...++|+||||-+..+.
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 34589999999997763
No 173
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.13 E-value=3.7e-05 Score=72.53 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=63.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-------CCceEeCCC-CC---CH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-------GVPVYTAGT-EV---KP 82 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-------gv~v~~~~~-~~---~~ 82 (403)
+..+++++|.+|+||||++.+++..+.++|.++++++++.......+++..++... .+.++.... .. ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34689999999999999999999999889999999998876665555543222111 111111111 11 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657 83 SQIAKQGLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 83 ~~~~~~~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
...+.+.+......++++++||.+....
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 2334444555444578999999988643
No 174
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.13 E-value=9.1e-06 Score=73.20 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=36.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
...+.++.|+|..||||||++.+|...|..+|++|..|.-+
T Consensus 3 ~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 3 KTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 34677999999999999999999999999999999998764
No 175
>PLN03127 Elongation factor Tu; Provisional
Probab=98.11 E-value=5.3e-05 Score=78.31 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=68.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
++...|+++|..++||||++.+|..+..+.|..-... .+|... .....|+.+-....
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~---------~E~~rGiTi~~~~~------------ 117 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP---------EEKARGITIATAHV------------ 117 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh---------hHhhcCceeeeeEE------------
Confidence 3445688899999999999999987766555431111 223111 01112222111100
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+..+++.+++|||||.... +..+.. .+..+|.+++|+|+..+ ......+.... ..++..-+++||+|..
T Consensus 118 -~~~~~~~~i~~iDtPGh~~f----~~~~~~--g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 118 -EYETAKRHYAHVDCPGHADY----VKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred -EEcCCCeEEEEEECCCccch----HHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 01124678999999997532 222221 22246899999999543 12222222211 2233233679999975
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 191 ~ 191 (447)
T PLN03127 191 D 191 (447)
T ss_pred C
Confidence 4
No 176
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.4e-05 Score=69.50 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=43.9
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
++-+++.-+|+++|++||||||+|++|..+|-.+|+-..++|+|..|.+.
T Consensus 25 ~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 25 KLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred HHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 34456678899999999999999999999999999999999999877554
No 177
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.10 E-value=2.2e-05 Score=72.92 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||...+...... .....+.+++|+|+..+. .......... ... ..-+|+||+|..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~------~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~-p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAA------ALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL-PIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHH------HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC-CEEEEEECcccC
Confidence 3578999999997643222111 122358899999995442 2222222221 222 344899999963
No 178
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.09 E-value=4.6e-05 Score=73.19 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~ 91 (403)
+..+++++|.+|+||||++.+++..++.. |.+|++++++.-.......+. ....++++..... .....+.+..++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL--GQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH--HHHhCCCcccCCccccccHHHHHHHHH
Confidence 34688999999999999999999999877 999999998753222222221 1222333221110 1112233344444
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--------H-------HHHHHHHHhhhcCCe
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--------Q-------EAAALVTTFNIEIGI 156 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--------~-------~~~~~~~~~~~~~~i 156 (403)
.+. ..-.+.++|+++.... ..+...+..+.... ..-++|+|.... . .....++.+....++
T Consensus 107 ~~~-~~~~l~i~d~~~~~~~-~~i~~~i~~~~~~~--~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v 182 (271)
T cd01122 107 EFE-GTGRLFMYDSFGEYSM-DSVLEKVRYMAVSH--GIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGI 182 (271)
T ss_pred Hhc-CCCcEEEEcCCCccCH-HHHHHHHHHHHhcC--CceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 442 2234677787765432 23334333333222 234788887111 0 112223445566777
Q ss_pred eEEEEccCCC
Q 015657 157 TGAILTKLDG 166 (403)
Q Consensus 157 ~GvIlNk~D~ 166 (403)
..++++.+..
T Consensus 183 tvll~sq~~~ 192 (271)
T cd01122 183 HITLVSHLRR 192 (271)
T ss_pred EEEEEecccC
Confidence 7788876653
No 179
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.09 E-value=3.7e-05 Score=85.45 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEeccCCChhhHHHHHHhhhccCCceEeCCC---C-CCHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---E-VKPS 83 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~---~-~~~~ 83 (403)
....|.|+|+|+.++||||++..|......-.. ...+.|.+ + .....|+.+..... + ..+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~-------~----~E~~rgiti~~~~~~~~~~~~~~ 84 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR-------A----DEAERGITIKSTGISLYYEMTDE 84 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCc-------H----HHHHhCCceecceeEEEeecccc
Confidence 445788999999999999999999865431101 11111111 1 11112222211100 0 0000
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-H-HHHHHHHHh-hhcCCeeEEE
Q 015657 84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTTF-NIEIGITGAI 160 (403)
Q Consensus 84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~-~~~~~~~~~-~~~~~i~GvI 160 (403)
.++..-...+..++-+.||||||...+-..+...+ ..+|.+++|+|+..| + ......+.. ...++ .-++
T Consensus 85 -~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al------~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~ 156 (843)
T PLN00116 85 -SLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLT 156 (843)
T ss_pred -cccccccccCCCceEEEEECCCCHHHHHHHHHHHH------hhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEE
Confidence 00000000112356778999999865433222221 234899999999655 1 112222222 22333 3589
Q ss_pred EccCCCC
Q 015657 161 LTKLDGD 167 (403)
Q Consensus 161 lNk~D~~ 167 (403)
+||+|..
T Consensus 157 iNK~D~~ 163 (843)
T PLN00116 157 VNKMDRC 163 (843)
T ss_pred EECCccc
Confidence 9999976
No 180
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.08 E-value=8.1e-05 Score=82.00 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCCCCCchhHH
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGDSRGGAA 173 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D~~~~~~~~ 173 (403)
.+|++||+++|++...-.--..+.++.+.+. .+++||++...| .+++-.++. ....+++.|||+|..+ ....
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~----~~N~ 258 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG----LSNE 258 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc----cchH
Confidence 5899999999998752111111245555555 789999999544 343333333 3567889999999532 2333
Q ss_pred HHHHHH--hCCCeEEeeccC
Q 015657 174 LSVKEV--SGKPIKLVGRGE 191 (403)
Q Consensus 174 ~~~~~~--~g~pi~fig~ge 191 (403)
..+.+. .++||..++..|
T Consensus 259 ~~l~~~~~~~~pv~~lp~~p 278 (817)
T PLN02974 259 KALLSYLSNRVPVFVLPPVP 278 (817)
T ss_pred HHHHHHHhcCCcEEeCCCCC
Confidence 333333 388886554433
No 181
>PRK00049 elongation factor Tu; Reviewed
Probab=98.06 E-value=4.1e-05 Score=78.03 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
+...|+++|..++||||++..|.....+.|..-... ..| .. ......|+..-....
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rg~Ti~~~~~------------- 68 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQID--------KA-PEEKARGITINTAHV------------- 68 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhcc--------CC-hHHHhcCeEEeeeEE-------------
Confidence 335588999999999999999998776654311100 111 11 011122322211100
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
.+..+++.+++|||||.. .+..++.. ....+|.+++|+|+..+ ......+.... ...+..-+++||+|...
T Consensus 69 ~~~~~~~~i~~iDtPG~~----~f~~~~~~--~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 69 EYETEKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEcCCCeEEEEEECCCHH----HHHHHHHh--hhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 011246789999999964 23333222 22346899999999544 22222222221 12333335789999753
No 182
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.06 E-value=5.6e-05 Score=70.93 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=39.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
.++.+.|+||||...+.......+ ..++.+++|+|+..+ ......++.. ....+ .-+++||+|..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l------~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAAL------RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHH------HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 368899999999875433222222 234889999999654 2222333322 23343 44899999964
No 183
>PRK09354 recA recombinase A; Provisional
Probab=98.05 E-value=3.2e-05 Score=77.01 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=57.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~ 91 (403)
.+++.|+|++|+||||+|..++...++.|.+|++||+.-. +. + ......|++ ++.... ....+.+...-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s-~~---~--~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA-LD---P--VYAKKLGVDIDNLLVSQP-DTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc-hH---H--HHHHHcCCCHHHeEEecC-CCHHHHHHHHHH
Confidence 4889999999999999999999999999999999998621 11 1 122333433 121111 123333322222
Q ss_pred HHHhCCCcEEEEeCCCCcc
Q 015657 92 EAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~ 110 (403)
.++...+++||||+...+.
T Consensus 133 li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred HhhcCCCCEEEEeChhhhc
Confidence 3345679999999977653
No 184
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.04 E-value=3e-05 Score=82.77 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=68.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEE--EEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVl--lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
|.|+++|+.++||||++.+|.+.... +...|- +.|.+ + .....|+.+......
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~--------~---~ErerGiTI~~~~~~------------ 58 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSN--------D---LERERGITILAKNTA------------ 58 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCc--------h---HHHhCCccEEeeeEE------------
Confidence 57899999999999999999864331 111121 11111 1 122345544432111
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHH-HhhhcCCeeEEEEccCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT-TFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~-~~~~~~~i~GvIlNk~D~~ 167 (403)
+.+.++.+.||||||...+. .++..... .+|.+++|+|+..+ ......+. .....+++ -|++||+|..
T Consensus 59 -v~~~~~kinlIDTPGh~DF~----~ev~~~l~--~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~~ 129 (594)
T TIGR01394 59 -IRYNGTKINIVDTPGHADFG----GEVERVLG--MVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDRP 129 (594)
T ss_pred -EEECCEEEEEEECCCHHHHH----HHHHHHHH--hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCCC
Confidence 12467899999999975432 22222222 34899999999544 11122222 22233443 4899999974
No 185
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=98.04 E-value=0.00012 Score=68.98 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYR 55 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~r 55 (403)
+..+++|+|.+|+||||++.+++..++.. |.+|++++++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 44789999999999999999999999887 9999999998543
No 186
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.03 E-value=2.5e-05 Score=72.34 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=37.3
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHhhhcC--CeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEI--GITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~--~i~GvIlNk~D~~~ 168 (403)
..+..+.|+||||...+...+. . ....++.+++|+|+..+. ........+.... +..-+|+||+|...
T Consensus 74 ~~~~~~~liDTpG~~~~~~~~~----~--~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 74 TPKRKFIIADTPGHEQYTRNMV----T--GASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred cCCceEEEEECCcHHHHHHHHH----H--hhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 3577899999999643211111 1 123458899999996441 1111111222222 22335799999753
No 187
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.02 E-value=3.6e-05 Score=77.62 Aligned_cols=86 Identities=27% Similarity=0.477 Sum_probs=56.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce---EeCCCCCCHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v---~~~~~~~~~~~~~~~~l~ 91 (403)
..++++.|.+|+||||++..++..+++.|.+|++++.+.. .+++.......++.. +.. .... +.+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~~l~l~-~e~~----le~I~~ 152 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTENLYLL-AETN----LEDILA 152 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcccEEEE-ccCc----HHHHHH
Confidence 5789999999999999999999999998899999998632 234433333334321 111 1111 222333
Q ss_pred HHHhCCCcEEEEeCCCCc
Q 015657 92 EAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l 109 (403)
.+...++++||||.-..+
T Consensus 153 ~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 153 SIEELKPDLVIIDSIQTV 170 (372)
T ss_pred HHHhcCCcEEEEcchHHh
Confidence 334468999999986543
No 188
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.02 E-value=2.6e-05 Score=81.51 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=64.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-----------eEeC-CCCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-----------VYTA-GTEVK 81 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-----------v~~~-~~~~~ 81 (403)
+..+++++|++|+||||++..+++..+++|.+|+++..+-.. +++....+..|++ +... .....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~----~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR----AQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH----HHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 458899999999999999999999999999999999988443 3333333333332 2221 12234
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l 109 (403)
+.+.+...++.+...++++|+||+-..+
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 4566666666666668899999985543
No 189
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.02 E-value=1.7e-05 Score=74.11 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~ 40 (403)
|+++|+.|+||||++.+|.+...
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g 24 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLG 24 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhc
Confidence 68999999999999999986653
No 190
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.02 E-value=0.00034 Score=61.10 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCCcccc--HHh---HHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQID--KAM---MDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d--~~l---~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
.+.++.++||||..... ... ......+.....++.+++|+|+... .............-...-+++||+|...
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 35678999999964320 001 1111122222345889999998432 2222323322222233458999999754
Q ss_pred c
Q 015657 169 R 169 (403)
Q Consensus 169 ~ 169 (403)
.
T Consensus 128 ~ 128 (174)
T cd01895 128 K 128 (174)
T ss_pred c
Confidence 4
No 191
>PRK05973 replicative DNA helicase; Provisional
Probab=98.02 E-value=5.8e-05 Score=71.39 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
+..+++|.|.+|+||||++.+++...+++|++|++++++-.....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 347889999999999999999999998899999999988543333
No 192
>CHL00071 tufA elongation factor Tu
Probab=98.01 E-value=7.2e-05 Score=76.52 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=67.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
++...|+++|..++||||++..|...+..-..+..... +..++. ......|+.+-.... .
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~------~~~d~~-~~e~~rg~T~~~~~~-------------~ 69 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKY------DEIDSA-PEEKARGITINTAHV-------------E 69 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccccc------ccccCC-hhhhcCCEeEEccEE-------------E
Confidence 44466899999999999999999866542111111000 011111 111222332221100 0
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
+..+++.+++|||||.. .+...+ +..+..+|.+++|+|+..+ ......+.... ..++..-+++||+|...
T Consensus 70 ~~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 70 YETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred EccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 11256789999999943 223322 2222345899999999543 22222222222 22332336799999754
No 193
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.01 E-value=7.4e-05 Score=62.15 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=59.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
|++.|.+|+||||+...|. |.+...+... +.. +..... ..+. ..+
T Consensus 2 V~iiG~~~~GKSTlin~l~------~~~~~~~~~~---~~~-----T~~~~~--~~~~-------------------~~~ 46 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT------GKKLAKVSNI---PGT-----TRDPVY--GQFE-------------------YNN 46 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH------TSTSSEESSS---TTS-----SSSEEE--EEEE-------------------ETT
T ss_pred EEEECCCCCCHHHHHHHHh------cccccccccc---ccc-----eeeeee--eeee-------------------ece
Confidence 6889999999999998887 4333222211 111 000000 0000 145
Q ss_pred CcEEEEeCCCCccccHHhH--HHHHHHhh-hcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEcc
Q 015657 98 VDVVIVDTAGRLQIDKAMM--DELKDVKR-VLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTK 163 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~--~el~~i~~-~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk 163 (403)
..++|+||||.......-. .....+.. .-..+-+++|+|+... ......+..+. .-...-+|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 6789999999865422111 11112222 2234778999998543 33444444454 44455588887
No 194
>PRK12735 elongation factor Tu; Reviewed
Probab=98.01 E-value=7.9e-05 Score=75.94 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=69.0
Q ss_pred ccCCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657 10 FAKSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA 86 (403)
Q Consensus 10 ~~~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~ 86 (403)
|...+| ..|+++|..++||||++..|...+...|..-... ..| +. ......|+.+-.....
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rGiT~~~~~~~------- 69 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQID--------NA-PEEKARGITINTSHVE------- 69 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhcc--------CC-hhHHhcCceEEEeeeE-------
Confidence 333344 5588899999999999999987665554211100 111 11 1112223322211100
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEcc
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTK 163 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk 163 (403)
+..++..+++|||||.. .+...+. ..+..+|.+++|+|+..+ ......+.... ..++..-+++||
T Consensus 70 ------~~~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 70 ------YETANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred ------EcCCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEe
Confidence 11245679999999963 2222221 223356888999999543 22222222221 223333346899
Q ss_pred CCCCC
Q 015657 164 LDGDS 168 (403)
Q Consensus 164 ~D~~~ 168 (403)
+|...
T Consensus 138 ~Dl~~ 142 (396)
T PRK12735 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99753
No 195
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.01 E-value=1.8e-05 Score=86.47 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
...+.|+++|..|+||||++..|......-.+ +..+.|.+ +.. ...++.+.......
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~---~~e--------~~rg~Ti~~~~~~~-------- 77 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFD---EQE--------QERGITINAANVSM-------- 77 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCC---HHH--------Hhhcchhhccccee--------
Confidence 34688999999999999999999864321111 11111211 000 00111111000000
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLD 165 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D 165 (403)
...+.+.+|+++||||||...+.......+ ...|.+++|+|+..+ ......... .....++. +++||+|
T Consensus 78 -~~~~~~~~~~i~liDTPG~~~f~~~~~~al------~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD 149 (720)
T TIGR00490 78 -VHEYEGNEYLINLIDTPGHVDFGGDVTRAM------RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVD 149 (720)
T ss_pred -EEeecCCceEEEEEeCCCccccHHHHHHHH------HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChh
Confidence 000124689999999999875433322222 234899999999654 222222322 23344544 8999999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 150 ~~ 151 (720)
T TIGR00490 150 RL 151 (720)
T ss_pred cc
Confidence 64
No 196
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.00 E-value=7.5e-05 Score=74.57 Aligned_cols=121 Identities=16% Similarity=0.236 Sum_probs=69.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-HHHhhhcc---CCceEeCCC--CCC-HHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-LVILGEQV---GVPVYTAGT--EVK-PSQIAK 87 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-l~~~~~~~---gv~v~~~~~--~~~-~~~~~~ 87 (403)
..+.+++|.-||||||+..+|... .+|.++.++-.|.-... +|. +....... .-.++.... -.. -..-+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~-ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLG-IDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCcccc-chHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 457899999999999999998864 36899999998854332 332 21111000 012332221 111 112233
Q ss_pred HHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEeccc
Q 015657 88 QGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT 139 (403)
Q Consensus 88 ~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~ 139 (403)
.++..+. ...+|+|||+|.|.-. ...++..+. .+...+.-+.++-|||+..
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~-P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLAL-PKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCC-HHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 4444442 3579999999999753 233333331 2222334477899999953
No 197
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.7e-05 Score=80.09 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=96.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+.|-+.|+.+--=||||++-.|.... | .++.+..+....|.+. +....|+.+-.-.....- ..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~t---g----~i~~~~~q~q~LDkl~-vERERGITIkaQtasify--------~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELT---G----TIDNNIGQEQVLDKLQ-VERERGITIKAQTASIFY--------KD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHh---C----CCCCCCchhhhhhhhh-hhhhcCcEEEeeeeEEEE--------Ec
Confidence 345788888999999999998776433 3 5666666666666663 445667765533221100 00
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCC-
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS- 168 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~- 168 (403)
...|-+.+|||||...+..+....+.. ++.++|||||..| |+..+....|..++.+. .|+||+|...
T Consensus 122 --~~~ylLNLIDTPGHvDFs~EVsRslaa------c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp~a 192 (650)
T KOG0462|consen 122 --GQSYLLNLIDTPGHVDFSGEVSRSLAA------CDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLPSA 192 (650)
T ss_pred --CCceEEEeecCCCcccccceehehhhh------cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCCCC
Confidence 135899999999998876666555432 4899999999665 66666667777766654 7899999642
Q ss_pred ch-hHHHHHHHHhCCCe
Q 015657 169 RG-GAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~~-~~~~~~~~~~g~pi 184 (403)
.. .....+.+.++.|-
T Consensus 193 dpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 193 DPERVENQLFELFDIPP 209 (650)
T ss_pred CHHHHHHHHHHHhcCCc
Confidence 33 33344555565543
No 198
>PHA02542 41 41 helicase; Provisional
Probab=97.99 E-value=0.00012 Score=76.21 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=37.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
...+++.|.||+||||++.++|...++.|++|++++++....
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 467888899999999999999999988899999999996543
No 199
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.99 E-value=0.00014 Score=68.87 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+..+++|+|.+|+||||++..+++...++|.+|++|..+-.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 45889999999999999999999887788999999998853
No 200
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.99 E-value=0.00017 Score=64.27 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=43.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCCCch--
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDSRG-- 170 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~~~~-- 170 (403)
.++.+.|+||||...... ..... ...++.+++|+|+..+. ......... ....+ .-+|+||+|.....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSY----EVSRS--LAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADPE 137 (179)
T ss_pred CcEEEEEEECCCChhhHH----HHHHH--HHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCHH
Confidence 467889999999754321 11111 12358899999995431 222222222 22333 45899999974321
Q ss_pred hHHHHHHHHhCCC
Q 015657 171 GAALSVKEVSGKP 183 (403)
Q Consensus 171 ~~~~~~~~~~g~p 183 (403)
.....+.+..+.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (179)
T cd01890 138 RVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHhCCC
Confidence 1223444445543
No 201
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.99 E-value=5.4e-05 Score=72.05 Aligned_cols=39 Identities=38% Similarity=0.669 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+|+++|.+||||||+|..|+.+|...|++|.+++.|..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 478999999999999999999999889999999888543
No 202
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.98 E-value=9.9e-06 Score=76.17 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=34.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
++++.++|..||||||++.+|+..|.++|++|.++..
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3689999999999999999999999999999999953
No 203
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.98 E-value=5.2e-05 Score=66.53 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.++++.|+||||...... +... ....++.+++|+|+..+ ......+..+...-...-+|+||+|..
T Consensus 48 ~~~~~~iiDtpG~~~~~~-----~~~~-~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFTN-----MRAR-GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHHH-----HHHH-HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 468999999999643211 1110 11235788999998543 222222222222222345889999965
No 204
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.98 E-value=3.8e-05 Score=74.16 Aligned_cols=107 Identities=26% Similarity=0.362 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.|||||||+|..|..+|...+++|.+|+-| .+. .. .+. +.....+......++..+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~--------~~~-~~--~~~-y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD--------SLG-ID--RND-YADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH--------HHH--T--TSS-S--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc--------ccc-cc--hhh-hhchhhhHHHHHHHHHHHHHhhc
Confidence 3689999999999999999999999999999999855 111 00 011 10111111122334555555543
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
.-++||+|..-.+. .+-.++..+++.......++-+++.
T Consensus 70 -~~~iVI~Dd~nYiK---g~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 70 -KDTIVILDDNNYIK---GMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp -T-SEEEE-S---SH---HHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -cCeEEEEeCCchHH---HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 44899999988764 6778888888887754445555554
No 205
>PRK15453 phosphoribulokinase; Provisional
Probab=97.97 E-value=5.4e-05 Score=73.03 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=39.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
.++.+|+|+|.+||||||++..|+..|...+.++.+++.|-|..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 45678999999999999999999999988888899999998764
No 206
>PRK09866 hypothetical protein; Provisional
Probab=97.96 E-value=0.00015 Score=76.78 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCccccHH-hHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcC--CeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKA-MMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEI--GITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~-l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~--~i~GvIlNk~D~~ 167 (403)
.+++|+|||||....... +-..+.. .+-..|-+++|+|+.. .......++.....- ...-+|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 578999999999764222 2222222 2334589999999953 222233333332221 1455899999975
No 207
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.96 E-value=7e-05 Score=64.93 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch---h
Q 015657 97 NVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG---G 171 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~---~ 171 (403)
++++.|+||||....... .-..+ ......-.++.+++|+|+................-...-+++||+|..... .
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchh
Confidence 468999999997543211 00011 111111246888999999654333333222222122345899999964322 1
Q ss_pred HHHHHHHHhCCCeEEe
Q 015657 172 AALSVKEVSGKPIKLV 187 (403)
Q Consensus 172 ~~~~~~~~~g~pi~fi 187 (403)
....+....+.|+..+
T Consensus 122 ~~~~~~~~~~~~~~~i 137 (158)
T cd01879 122 DLDKLSELLGVPVVPT 137 (158)
T ss_pred hHHHHHHhhCCCeEEE
Confidence 2233444556666433
No 208
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.96 E-value=0.00016 Score=62.95 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~ 169 (403)
++.+.++||||.-.. ...+.. ....++.+++|+|+..+ ........... ......-+++||+|....
T Consensus 50 ~~~~~~~DtpG~~~~----~~~~~~--~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 50 GKRLGFIDVPGHEKF----IKNMLA--GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred CcEEEEEECCChHHH----HHHHHh--hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 567899999996322 111111 12246889999998542 22222111111 122234589999997543
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=97.96 E-value=0.0001 Score=78.77 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=67.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCC-cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~-kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
..+.|+++|..++||||++..|..... +.+. .-.+.|.+ ......|+.+......
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~-----------~~E~erGiTi~~~~~~---------- 62 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSN-----------DLEKERGITILAKNTA---------- 62 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccc-----------cccccCceEEEEEEEE----------
Confidence 467899999999999999998875321 1110 00112211 1112233333321110
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHH-HhhhcCCeeEEEEccCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVT-TFNIEIGITGAILTKLDG 166 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~-~~~~~~~i~GvIlNk~D~ 166 (403)
+.++++.+.|+||||...+.... .... -..+.+++|+|+..+. .....+. .....+++ -+++||+|.
T Consensus 63 ---i~~~~~~inliDTPG~~df~~~v----~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~ 132 (607)
T PRK10218 63 ---IKWNDYRINIVDTPGHADFGGEV----ERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR 132 (607)
T ss_pred ---EecCCEEEEEEECCCcchhHHHH----HHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 11367899999999976543222 2222 2348999999996541 1112222 22334444 489999996
Q ss_pred C
Q 015657 167 D 167 (403)
Q Consensus 167 ~ 167 (403)
.
T Consensus 133 ~ 133 (607)
T PRK10218 133 P 133 (607)
T ss_pred C
Confidence 4
No 210
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=6.5e-05 Score=67.45 Aligned_cols=40 Identities=35% Similarity=0.512 Sum_probs=36.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+|.+|+++|++||||||++..|+..|...+..+.+++.|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 3678999999999999999999999999888888888877
No 211
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.95 E-value=4.2e-05 Score=68.09 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=36.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
++++.++|.+||||||++.+|...|..+|++|.+|..|..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 3689999999999999999999999999999999887654
No 212
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.95 E-value=4e-05 Score=77.86 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=61.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
-|+++|.++|||||+...|. +.++ .|..-++ + ++....++ +.. ..
T Consensus 161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~~p~---T-----T~~p~~Gi--v~~------------------~~ 205 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVADYPF---T-----TLVPNLGV--VRV------------------DD 205 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh------CCcc-cccCCCC---C-----ccCcEEEE--EEe------------------CC
Confidence 58899999999999998887 3344 2221111 1 11122221 111 01
Q ss_pred CCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEeccc------HHHHHHHHH---Hhhhc--CCeeEEEEc
Q 015657 97 NVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT------GQEAAALVT---TFNIE--IGITGAILT 162 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~------g~~~~~~~~---~~~~~--~~i~GvIlN 162 (403)
...++++||||.+.-. ..+... -+..+-.++.+++|+|+.. .++...... .+... -...-+|+|
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~~--~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGIR--FLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHHH--HHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 2359999999986421 111111 1122234578899999751 122222222 22221 134558999
Q ss_pred cCCCCCc
Q 015657 163 KLDGDSR 169 (403)
Q Consensus 163 k~D~~~~ 169 (403)
|+|....
T Consensus 284 KiDl~~~ 290 (390)
T PRK12298 284 KIDLLDE 290 (390)
T ss_pred CCccCCh
Confidence 9997543
No 213
>PRK06526 transposase; Provisional
Probab=97.94 E-value=3.9e-05 Score=73.48 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=53.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
+..++++|++|+|||+++.+|+..+.++|++|.++.+. ...+++... . ..+ .....+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~-~-------~~~-------~~~~~l~~l- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAA-H-------HAG-------RLQAELVKL- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHH-H-------hcC-------cHHHHHHHh-
Confidence 34589999999999999999999999999999765432 222333211 0 000 112223444
Q ss_pred hCCCcEEEEeCCCCccccHHhH
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMM 116 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~ 116 (403)
..+|++|||-.|....+....
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~~ 178 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEAA 178 (254)
T ss_pred -ccCCEEEEcccccCCCCHHHH
Confidence 579999999999876544433
No 214
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.93 E-value=4.9e-05 Score=71.42 Aligned_cols=141 Identities=19% Similarity=0.152 Sum_probs=66.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH----HHH--Hhh-hccCCceEeCCCCCCHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID----QLV--ILG-EQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~----~l~--~~~-~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
++++|..|+||||++..|.......|.-......|.++..... .+. .++ ...+.. ....... .. ....
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~-~~~~~~~-~~---~~~~ 76 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV-VNYPDNH-LS---ESDI 76 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCce-ecCCCCc-cc---cccc
Confidence 5778999999999999998644444444444444422111100 000 000 000100 0000000 00 0001
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
+.+...++.+.+|||||.... ..+...-.....+|.+++|+|+..+ ......+... ....+ .-+|+||+|..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~----~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~ 151 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERY----LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLA 151 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHH----HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECcccc
Confidence 112235778999999996432 2221111111246888999998433 2222222222 23344 45899999974
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 152 ~ 152 (224)
T cd04165 152 P 152 (224)
T ss_pred C
Confidence 3
No 215
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.92 E-value=5.7e-05 Score=78.09 Aligned_cols=86 Identities=26% Similarity=0.504 Sum_probs=57.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~ 91 (403)
..+++++|.+|+||||++..++..++++|.+|+++++.- ..+++.......+.+ ++.. ...+ +.+.++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~~l~~~-~e~~----l~~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSDNLYLL-AETN----LEAILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChhcEEEe-CCCC----HHHHHH
Confidence 578999999999999999999999998899999999863 233443333333331 1111 1111 223333
Q ss_pred HHHhCCCcEEEEeCCCCc
Q 015657 92 EAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l 109 (403)
.++..++++||||....+
T Consensus 151 ~i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTM 168 (446)
T ss_pred HHHhhCCCEEEEechhhh
Confidence 444457999999986544
No 216
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.92 E-value=0.0044 Score=62.68 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEeccCCChhhHHHHHHhhhccCC-ceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYRPAAIDQLVILGEQVGV-PVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd~D~~rp~~~~~l~~~~~~~gv-~v~~~~~~~~~~~~~~~~ 89 (403)
..+..++|+|++|+||||++..++..+...+ ..+..|+|....... .-+..+...... +. + .......+.....
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~-~-~~~~~~~~~~~~~ 129 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY-AIFSEIARQLFGHPP-P-SSGLSFDELFDKI 129 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH-HHHHHHHHHhcCCCC-C-CCCCCHHHHHHHH
Confidence 4556688999999999999999999998764 677777776543211 111111111111 10 0 1112234444444
Q ss_pred HHHHHh-CCCcEEEEeCCCCcc
Q 015657 90 LEEAKK-KNVDVVIVDTAGRLQ 110 (403)
Q Consensus 90 l~~~~~-~~~D~VIIDtpg~l~ 110 (403)
.+.+.. ..+-+|+||=.-.+.
T Consensus 130 ~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 130 AEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHHHhcCCEEEEEECCHhHhh
Confidence 444432 345688999876653
No 217
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.92 E-value=8.1e-05 Score=79.69 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
...|.++++|..++||||++..|..... +++..-.+.|.. ......|+.+........
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~-----------~~ErerGiTi~~~~v~~~-------- 65 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSM-----------DLERERGITIKAQAVRLN-------- 65 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCc-----------hHHhhcCCcccccEEEEE--------
Confidence 3567899999999999999999886432 111111111111 111222332221100000
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
+.....++|.+.|+||||...+..... .... .++.+++|+|+..+ ++...........++ .-+|+||+|.
T Consensus 66 ~~~~dg~~~~lnLiDTPGh~dF~~~v~----~sl~--~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 66 YKAKDGETYILNLIDTPGHVDFSYEVS----RSLA--ACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred EEccCCCcEEEEEEECCCcHHHHHHHH----HHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 000001468899999999865432222 2212 34889999999654 322222222233444 4489999997
Q ss_pred CCc-h-hHHHHHHHHhCCC
Q 015657 167 DSR-G-GAALSVKEVSGKP 183 (403)
Q Consensus 167 ~~~-~-~~~~~~~~~~g~p 183 (403)
... . .....+.+.++.+
T Consensus 139 ~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 139 PAADPERVKQEIEDVIGID 157 (600)
T ss_pred CcccHHHHHHHHHHHhCCC
Confidence 432 2 2223444555554
No 218
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.92 E-value=0.0001 Score=66.85 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh----------CCCcEEEEeccCCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVYR 55 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~----------~G~kVllVd~D~~r 55 (403)
..+.+++|++|+||||++..++..++. ++.+|++++++...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 357899999999999999999999986 57899999999653
No 219
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.91 E-value=3.2e-05 Score=79.92 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
++...++++|+.++||||++..|.+.+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g 32 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLG 32 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhC
Confidence 3445689999999999999999987664
No 220
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=5.8e-05 Score=78.42 Aligned_cols=229 Identities=16% Similarity=0.168 Sum_probs=127.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+.|-|.++.+=-+||||++....+|-..- --+-+.+.. .+.-+...+....|+.+..+....
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~---~~i~ev~~~--~a~md~m~~er~rgITiqSAAt~~------------ 99 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRI---KHIGEVRGG--GATMDSMELERQRGITIQSAATYF------------ 99 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeeccee---eeccccccC--ceeeehHHHHHhcCceeeeceeee------------
Confidence 356888999999999999999888766431 111111111 121122234556677665543322
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCC--CC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDG--DS 168 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~--~~ 168 (403)
.|.+|.+.||||||...+.-+....|..+ |..++|+++..| +.....++....+.++ .-.++||+|. ..
T Consensus 100 -~w~~~~iNiIDTPGHvDFT~EVeRALrVl------DGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 100 -TWRDYRINIIDTPGHVDFTFEVERALRVL------DGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred -eeccceeEEecCCCceeEEEEehhhhhhc------cCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC
Confidence 25689999999999987755444444333 788999999655 3333344433333333 4478899994 34
Q ss_pred chhHHHHHHHHhCC-------CeE----EeeccCCcCCCC-CCC------------chhhhhhhcCCccHHHHHHHHHHH
Q 015657 169 RGGAALSVKEVSGK-------PIK----LVGRGERMEDLE-PFY------------PDRMAGRILGMGDVLSFVEKAQEV 224 (403)
Q Consensus 169 ~~~~~~~~~~~~g~-------pi~----fig~ge~v~~l~-~f~------------~~~~~~r~lG~~dv~~l~e~~~e~ 224 (403)
....+..+...++. |+. |-|...-+.... -|+ |+++.++ ..+.++.+-|.
T Consensus 173 ~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~------~~e~R~~LIE~ 246 (721)
T KOG0465|consen 173 PFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEEL------AEEKRQALIET 246 (721)
T ss_pred hHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHH------HHHHHHHHHHH
Confidence 44555555554443 221 111111111000 011 2222111 12333334444
Q ss_pred hhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC------------------hhHHHhcCCCCC
Q 015657 225 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS------------------MSRVIGMIPGMG 271 (403)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~------------------~~~~~~~~pg~~ 271 (403)
+.+.|.+.....+++.+++.+++...++...-.+. ++.+++.+|..+
T Consensus 247 lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~ 311 (721)
T KOG0465|consen 247 LADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPS 311 (721)
T ss_pred HhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChh
Confidence 44445555566667778999999999988765443 466778888654
No 221
>PRK08233 hypothetical protein; Provisional
Probab=97.91 E-value=3.7e-05 Score=68.91 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+|+|.+||||||+|..|+..|. +..+...|.+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~ 38 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY 38 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence 458899999999999999999998874 2355556555
No 222
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.91 E-value=0.00018 Score=73.75 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=62.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
|+++|.+||||||+...|. |.+..+++.. |....+ . .+. .+.+.+
T Consensus 2 i~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~t~d---------~-~~~----------------~~~~~~ 46 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT------GKRDAIVSDT---PGVTRD---------R-KYG----------------DAEWGG 46 (429)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCcceecCC---CCcccC---------c-eEE----------------EEEECC
Confidence 7899999999999998876 4444333321 111000 0 000 001245
Q ss_pred CcEEEEeCCCCccccHHhHHHHHH-H-hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKD-V-KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~-i-~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
..+.|+||||.......+...+.. . ...-.++.+++|+|+..+ ......+..+...-...-+|+||+|....
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc
Confidence 679999999974332222221111 1 112245889999999543 22222233232222334589999997543
No 223
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.91 E-value=2.7e-05 Score=80.51 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
+...++++|..++||||++..|...+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g 32 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCG 32 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcC
Confidence 334588999999999999999987654
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.90 E-value=0.00014 Score=74.04 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=67.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
++...|+++|..++||||++..|...+...|..-... ..| .. ......|+.+-....
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rG~Ti~~~~~------------ 68 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQID--------NA-PEEKARGITINTAHV------------ 68 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhccccccccccc--------CC-HHHHhcCcceeeEEE------------
Confidence 3446689999999999999999987666544321100 111 10 011122332211100
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+..+++.+.||||||...+ ...+ +.....+|.+++|+|+..+ ......+.... ..++..-+++||+|..
T Consensus 69 -~~~~~~~~~~liDtpGh~~f----~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 69 -EYETENRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred -EEcCCCEEEEEEECCchHHH----HHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 00124678999999996432 2222 2222345889999999653 22222222222 2233333578999965
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 142 ~ 142 (394)
T TIGR00485 142 D 142 (394)
T ss_pred C
Confidence 3
No 225
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00024 Score=68.73 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
..+|+=|.|+.||||||+|..++....+.|.+|.+||+.- ++|....++.... ..++.+..........+++......
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-hcceeEecCCCHHHHHHHHHHHHHh
Confidence 3488899999999999999999999999998999999875 7787777664321 2334444333333333344444433
Q ss_pred HHhCCCcEEEEeCCCCcc
Q 015657 93 AKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~ 110 (403)
.. +.+++||||+...+.
T Consensus 138 ~~-~~i~LvVVDSvaa~~ 154 (279)
T COG0468 138 GA-EKIDLLVVDSVAALV 154 (279)
T ss_pred cc-CCCCEEEEecCcccc
Confidence 32 369999999977653
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.87 E-value=7.4e-05 Score=63.14 Aligned_cols=105 Identities=19% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCcEEEEeccCCC-hhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-----G~kVllVd~D~~r-p~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~ 87 (403)
..++++++|++|+||||++..++..+... ..+|+.+.+.... +..+ ...+....+.+... .....+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~---~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF--AQEILEALGLPLKS---RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH--HHHHHHHHT-SSSS---TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH--HHHHHHHhCccccc---cCCHHHHHH
Confidence 45788999999999999999999988764 5677777776554 2221 22233333333222 234555555
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~ 124 (403)
...+.+......++|||-.-.+. +...+..+..+..
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence 55566654445689999887763 3555555544444
No 227
>PRK04328 hypothetical protein; Provisional
Probab=97.87 E-value=0.00028 Score=67.31 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=36.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+..+++++|.+|+|||+++..++....++|.++++|+.+-.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 46889999999999999999999888788999999998753
No 228
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.86 E-value=0.00033 Score=64.15 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH---HHH---HHHHHhhhcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ---EAA---ALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~---~~~---~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
.+.++|+||||.... .......... +......+.+++|+|+.... ... .....+...-...-+|+||+|...
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 358999999997432 1111111111 11233568899999985332 111 222222211123458999999754
Q ss_pred c
Q 015657 169 R 169 (403)
Q Consensus 169 ~ 169 (403)
.
T Consensus 168 ~ 168 (204)
T cd01878 168 D 168 (204)
T ss_pred h
Confidence 3
No 229
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.85 E-value=0.00036 Score=68.64 Aligned_cols=44 Identities=34% Similarity=0.489 Sum_probs=39.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
..+|+ ++++|+.-+||||++.-|..|..+.|++++.++.|+..+
T Consensus 101 ~~GPr-v~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 101 SYGPR-VMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred ccCCE-EEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 34566 678899999999999999999999999999999999774
No 230
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.85 E-value=0.00025 Score=72.94 Aligned_cols=117 Identities=22% Similarity=0.336 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+||||||+...|. |.+..+++.. |+.. ...... .....
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~~---~~~t-----------~d~~~~---------------~~~~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVADT---PGVT-----------RDRIYG---------------EAEWL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCCC---CCCc-----------ccceEE---------------EEEEC
Confidence 47888999999999998886 5454433311 1110 000000 00124
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
++++.|+||||....+......+... .....+|.+++|+|+..+ ......+..+...-...-+|+||+|...
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 57899999999865222122222111 112346889999999543 1111222222222233458999999654
No 231
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.84 E-value=6.1e-05 Score=70.43 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~ 54 (403)
+..+++++|.+|+|||+++..++...+++ |.+|++|..+.-
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 45889999999999999999999988888 999999998743
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.84 E-value=0.0001 Score=75.39 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=38.4
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
++++.+.||||||...+...+.. .+..+|.+++|+|+..+ + +....+..+. .+..-+++||+|...
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~------~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviNK~D~~~ 147 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMAT------GASTADLAVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVNKMDLVD 147 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHH------HHhhCCEEEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEEeccccc
Confidence 35778999999995433222222 22245889999999544 1 2222222222 332347899999753
No 233
>PTZ00416 elongation factor 2; Provisional
Probab=97.83 E-value=2.7e-05 Score=86.41 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE--EEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC--MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV--llVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
.+.+.|+++|+.++||||++..|......-..+. .....|.. + .....|+.+........ ... ..-
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~-~--------~E~~rgiti~~~~~~~~-~~~--~~~ 84 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTR-A--------DEQERGITIKSTGISLY-YEH--DLE 84 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccc-h--------hhHhhcceeeccceEEE-eec--ccc
Confidence 4568899999999999999999986443110000 00011210 0 11112222211100000 000 000
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
..-...++.+.+|||||...+- .++... ....|.+++|+|+..+ ......++.....-...-+++||+|..
T Consensus 85 ~~~~~~~~~i~liDtPG~~~f~----~~~~~a--l~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 85 DGDDKQPFLINLIDSPGHVDFS----SEVTAA--LRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cccCCCceEEEEEcCCCHHhHH----HHHHHH--HhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0000135779999999987532 222221 2234889999999544 122233332222212345899999976
No 234
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.83 E-value=0.00093 Score=68.72 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=63.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..|+++|.+|+||||+...|. |....++.-. +.. . .+.+... +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~~---~gt--------t---~~~~~~~---------------~ 216 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVSDI---AGT--------T---RDSIDTP---------------F 216 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCc--------e---EEEEEEE---------------E
Confidence 45668999999999999998876 3333222211 100 0 0000000 0
Q ss_pred HhCCCcEEEEeCCCCccc---c--HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQI---D--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~---d--~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
...+.++.++||||.... + .+.......+...-.+|.+++|+|+..+ ......+..........-+++||+|.
T Consensus 217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 014567999999996421 1 1111111222223345889999999543 22223333222222344589999997
Q ss_pred C
Q 015657 167 D 167 (403)
Q Consensus 167 ~ 167 (403)
.
T Consensus 297 ~ 297 (435)
T PRK00093 297 V 297 (435)
T ss_pred C
Confidence 5
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.83 E-value=5.6e-05 Score=78.77 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
++.-.|+++|..++||||++..|....
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc
Confidence 455668889999999999999998664
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=97.83 E-value=0.00021 Score=74.45 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE--EEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl--lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
++...++++|..++||||++..|...+..-+.+.. ....| ... .....|+.+......
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D--------~~~-~Er~rGiTi~~~~~~----------- 138 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEID--------AAP-EERARGITINTATVE----------- 138 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhcccccccccccc--------CCh-hHHhCCeeEEEEEEE-----------
Confidence 34466889999999999999999866543211110 00111 110 111123322111000
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
+..+++.+.||||||...+ ..++ +..+..+|.+++|+|+..+ ....+.+... ...++..-+++||+|..
T Consensus 139 --~~~~~~~i~liDtPGh~~f----~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 139 --YETENRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred --EecCCcEEEEEECCCHHHH----HHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 0124678999999996532 2222 1122245889999998544 1222222211 12233234689999975
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 211 ~ 211 (478)
T PLN03126 211 D 211 (478)
T ss_pred C
Confidence 4
No 237
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.83 E-value=8.3e-05 Score=64.75 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=44.8
Q ss_pred EEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH--HHHHHHhhhcCCeeEEEEccCCCCCc---hhHHHH
Q 015657 101 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDSR---GGAALS 175 (403)
Q Consensus 101 VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~--~~~~~~~~~~~~i~GvIlNk~D~~~~---~~~~~~ 175 (403)
.+|||||-.-....+...|... ..+++-+++|.|+...... -..+..|+ .++. =|+||+|.... ...+..
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~t--a~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvI-GVITK~Dl~~~~~~i~~a~~ 113 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVT--AQDADVVLLLQDATEPRSVFPPGFASMFN--KPVI-GVITKIDLPSDDANIERAKK 113 (143)
T ss_pred cEEECChhheeCHHHHHHHHHH--HhhCCEEEEEecCCCCCccCCchhhcccC--CCEE-EEEECccCccchhhHHHHHH
Confidence 4599999876555555554333 3356889999999654322 12233343 2333 46799997733 333444
Q ss_pred HHHHhCC
Q 015657 176 VKEVSGK 182 (403)
Q Consensus 176 ~~~~~g~ 182 (403)
..+..|+
T Consensus 114 ~L~~aG~ 120 (143)
T PF10662_consen 114 WLKNAGV 120 (143)
T ss_pred HHHHcCC
Confidence 5555554
No 238
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.83 E-value=0.00021 Score=64.91 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=36.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
.++.+.|+||||... +..... ...-.++.+++|+|+..+. ......... ....+ .-+|+||+|..
T Consensus 66 ~~~~~~i~DtpG~~~----~~~~~~--~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHAS----LIRTII--GGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcHH----HHHHHH--HHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccC
Confidence 478999999999742 222221 1122357899999996431 111111111 11222 34899999965
No 239
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.83 E-value=4.8e-05 Score=67.65 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=36.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+.|+.|+|..+|||||++..|...|..+|++|.+|.-+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 6799999999999999999999999999999999975533
No 240
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.83 E-value=5.8e-05 Score=64.33 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCccccHHhH---HHHHHHhhhcCCceEEEEEecccHHHHHHH--HHHhhhcCCeeEEEEccCCCCCch
Q 015657 97 NVDVVIVDTAGRLQIDKAMM---DELKDVKRVLNPTEVLLVVDAMTGQEAAAL--VTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~---~el~~i~~~~~~~~vllVvda~~g~~~~~~--~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.++++++||||......... ...... ...++.+++|+|+......... ...........-+++||+|.....
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~--~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRV--LERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh
Confidence 67999999999764321111 111111 2245888999999543221111 222222223345999999976543
No 241
>PRK06762 hypothetical protein; Provisional
Probab=97.82 E-value=9.3e-05 Score=65.69 Aligned_cols=37 Identities=41% Similarity=0.688 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
|++|+++|++||||||+|..|+..+ |..+.+++.|..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~ 38 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVV 38 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHH
Confidence 6899999999999999999999887 446778887743
No 242
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.82 E-value=0.0001 Score=76.40 Aligned_cols=87 Identities=24% Similarity=0.420 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l 90 (403)
+..++++.|.+|+||||++..++..+++.|.+|++++.+-. .+|+.......++. ++... .... + ...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~~l~~~~-e~~~-~---~I~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEPNLYVLS-ETNW-E---QIC 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChHHeEEcC-CCCH-H---HHH
Confidence 35788999999999999999999999988899999998732 33443333344432 11111 1122 2 223
Q ss_pred HHHHhCCCcEEEEeCCCCc
Q 015657 91 EEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l 109 (403)
..+...++++||||.-..+
T Consensus 164 ~~i~~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQTL 182 (454)
T ss_pred HHHHhcCCcEEEEecchhh
Confidence 3344468999999975543
No 243
>PRK06696 uridine kinase; Validated
Probab=97.82 E-value=3e-05 Score=72.64 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=40.0
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
...+|.+|+|+|.+||||||+|..|+..|...|.+|.++..|-|.
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 355789999999999999999999999999889999888888664
No 244
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.81 E-value=0.00032 Score=60.41 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|++.|.+|+||||+...|. +.+...+... +... ..+.... ....
T Consensus 3 ~i~l~G~~~~GKstli~~l~------~~~~~~~~~~---~~~~-----------~~~~~~~---------------~~~~ 47 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA------GRDRAIVSDI---AGTT-----------RDVIEES---------------IDIG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCceEeccCC---CCCc-----------cceEEEE---------------EEeC
Confidence 47899999999999998776 3333222211 1110 0000000 0014
Q ss_pred CCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
+++++++||||........... . ........++.+++|+|+... ......... ......-+|+||+|....
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 5689999999975432211100 0 111222346888999999632 222222222 122334589999997543
No 245
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.81 E-value=9.1e-05 Score=65.10 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh-----hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN-----IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~-----~~~~i~GvIlNk~D~~ 167 (403)
.++.+.++||||...... ..... ...++.+++|+|+........ ....+. ... ..-+|+||+|..
T Consensus 48 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D~~ 120 (167)
T cd04160 48 GNARLKFWDLGGQESLRS----LWDKY--YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGV-PLLILANKQDLP 120 (167)
T ss_pred CCEEEEEEECCCChhhHH----HHHHH--hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCC-CEEEEEEccccc
Confidence 467899999999643211 11111 224588899999865432222 222111 122 345899999964
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 121 ~ 121 (167)
T cd04160 121 D 121 (167)
T ss_pred c
Confidence 4
No 246
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.81 E-value=0.0004 Score=65.19 Aligned_cols=107 Identities=28% Similarity=0.390 Sum_probs=60.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccC-CceEeCCCCCCHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG-VPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~g-v~v~~~~~~~~~~~~~~~~l 90 (403)
..+|.+|+++|.+|+||||++..|...+... .+ . ...| +.+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--~~---~----------------~~~g~i~i~~--------------- 79 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--NI---S----------------DIKGPITVVT--------------- 79 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--cc---c----------------cccccEEEEe---------------
Confidence 3578999999999999999998887443211 00 0 0011 11111
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhh-cCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI-EIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~-~~~i~GvIlNk~D~~ 167 (403)
..+..++++|||+.+ ..+ .+.. -..+-+++|+|+..+ .........+.. ..+..-+|+||+|.-
T Consensus 80 ----~~~~~i~~vDtPg~~---~~~----l~~a--k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 ----GKKRRLTFIECPNDI---NAM----IDIA--KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ----cCCceEEEEeCCchH---HHH----HHHH--HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 135678999999854 111 1222 224888999998543 222222222222 233233599999974
No 247
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.80 E-value=0.00014 Score=67.03 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=36.8
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF-NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~-~~~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+||||... +..+. +......+.+++|+|+..+ ......+..+ .......-+|+||+|...
T Consensus 83 ~~i~~iDtPG~~~----~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHEI----LMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChHH----HHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 6799999999532 22222 1222245889999999542 2222222222 122333447999999754
No 248
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.80 E-value=3.4e-05 Score=78.41 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|+.|+|..||||||++.+|...|..+|++|.+|.-|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5899999999999999999999999999999997644
No 249
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.80 E-value=0.00022 Score=73.35 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
++...|+++|+.++||||++..|....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence 444558999999999999999998554
No 250
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.80 E-value=0.00048 Score=61.88 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=19.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
.....|+++|.+|+||||+...|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 344567899999999999998776
No 251
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.80 E-value=0.00029 Score=61.93 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=37.7
Q ss_pred CcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEecccH----HHHHHHHHHhhh-----cCCeeEEEEccCC
Q 015657 98 VDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG----QEAAALVTTFNI-----EIGITGAILTKLD 165 (403)
Q Consensus 98 ~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~g----~~~~~~~~~~~~-----~~~i~GvIlNk~D 165 (403)
..+.|+||||.... ...+.... +...-..+.+++|+|+... +........+.. .-...-+|+||+|
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHH--HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 38899999996421 11122211 1112235889999999644 232222222221 1123458999999
Q ss_pred CCCc
Q 015657 166 GDSR 169 (403)
Q Consensus 166 ~~~~ 169 (403)
....
T Consensus 126 l~~~ 129 (170)
T cd01898 126 LLDE 129 (170)
T ss_pred cCCc
Confidence 6443
No 252
>PRK07667 uridine kinase; Provisional
Probab=97.79 E-value=4.4e-05 Score=69.98 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
..+.+|+|+|.+||||||+|..|+..|...|.+|.+++.|-+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 345899999999999999999999999999999999999964
No 253
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.79 E-value=0.00034 Score=74.93 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
..|.++++|..++||||++..|......-..+ + +.....+.+ ......|+.+........ +...
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~------~-~~~~~~D~~-~~ErerGiTi~~~~v~~~--------~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER------E-MREQVLDSM-DLERERGITIKAQAVRLN--------YKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc------c-ccccccCCC-hHHHhcCCCeeeeEEEEE--------EEcC
Confidence 35789999999999999999888643210000 0 011111111 011223333221100000 0000
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~~- 169 (403)
....|.+.|+||||...+.... ... ...++.+++|+|+..+ ++...........++ .-+|+||+|....
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v----~~~--l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~ 138 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEV----SRS--LAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD 138 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHH----HHH--HHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC
Confidence 0134789999999986542222 222 1235889999999654 332222222233343 4489999997432
Q ss_pred -hhHHHHHHHHhCCC
Q 015657 170 -GGAALSVKEVSGKP 183 (403)
Q Consensus 170 -~~~~~~~~~~~g~p 183 (403)
......+.+.++.+
T Consensus 139 ~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 139 PERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHHHhCCC
Confidence 22234455555543
No 254
>PRK08727 hypothetical protein; Validated
Probab=97.79 E-value=0.0014 Score=61.86 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..++++|++|+|||+++..++..+.++|++|.++.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 4589999999999999999999999999999988753
No 255
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.77 E-value=0.00022 Score=66.61 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+..++++.|.+|+|||+++..++....++|.+|++++.+-
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3578999999999999999999998888899999999874
No 256
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.76 E-value=0.00027 Score=67.52 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
..+-.|+++|.+|+||||+...|.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHh
Confidence 345678899999999999998877
No 257
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.76 E-value=5.8e-05 Score=76.11 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.+++|.|+|.+||||||++.+|...|.++|++|.+|.-|.+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 46799999999999999999999999999999999986644
No 258
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.76 E-value=0.00011 Score=70.88 Aligned_cols=124 Identities=21% Similarity=0.313 Sum_probs=74.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
.--+++.|.|.+||||++..+. |.||..+..-++... .. ...+++.
T Consensus 72 ~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~TTr--------~~--ilgi~ts------------------ 117 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHTTR--------HR--ILGIITS------------------ 117 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhh------CCcccccccccccee--------ee--eeEEEec------------------
Confidence 3457888999999999999998 999987665432211 11 1223332
Q ss_pred hCCCcEEEEeCCCCcccc-----HHhHHHHHHHhh-hcCCceEEEEEeccc-H----HHHHHHHHHhhhcCCe-eEEEEc
Q 015657 95 KKNVDVVIVDTAGRLQID-----KAMMDELKDVKR-VLNPTEVLLVVDAMT-G----QEAAALVTTFNIEIGI-TGAILT 162 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d-----~~l~~el~~i~~-~~~~~~vllVvda~~-g----~~~~~~~~~~~~~~~i-~GvIlN 162 (403)
..+.+|++||||.+... ...+.-+.+... +-.+|-+++|+|+.. . .........+. .+ .-+|+|
T Consensus 118 -~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys---~ips~lvmn 193 (379)
T KOG1423|consen 118 -GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS---KIPSILVMN 193 (379)
T ss_pred -CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh---cCCceeecc
Confidence 57899999999988641 112222222222 234688899999852 1 22333333332 23 237899
Q ss_pred cCCCCCchhHHHHH
Q 015657 163 KLDGDSRGGAALSV 176 (403)
Q Consensus 163 k~D~~~~~~~~~~~ 176 (403)
|+|.-.....++..
T Consensus 194 kid~~k~k~~Ll~l 207 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNL 207 (379)
T ss_pred chhcchhhhHHhhh
Confidence 99966544444443
No 259
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.76 E-value=0.00025 Score=64.23 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=38.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
..++.+++++|.+|+||||++..|+..+...|..+.+++.|..+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 35678999999999999999999999998888888899988544
No 260
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.76 E-value=0.00038 Score=70.57 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=92.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..|-|+|..+---||||+.-+|...-.. .+..|.=--.| .. .+.+..|+.++.-.+..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMD------Sn---DlEkERGITILaKnTav----------- 63 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMD------SN---DLEKERGITILAKNTAV----------- 63 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcC------cc---chhhhcCcEEEecccee-----------
Confidence 3567888889899999999888753221 11112100001 01 23456678877654432
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC-
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD- 167 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~- 167 (403)
.++++.+.||||||.-.+..+. ..+...+ |.++|+|||..| |.-.-.-+.+...+++. ||+||+|..
T Consensus 64 --~~~~~~INIvDTPGHADFGGEV----ERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp~ 134 (603)
T COG1217 64 --NYNGTRINIVDTPGHADFGGEV----ERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRPD 134 (603)
T ss_pred --ecCCeEEEEecCCCcCCccchh----hhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCCC
Confidence 2578999999999987664433 3333333 899999999544 55555556677666654 899999965
Q ss_pred Cc-hhHHHHH----------HHHhCCCeEEeeccCCcCC
Q 015657 168 SR-GGAALSV----------KEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 168 ~~-~~~~~~~----------~~~~g~pi~fig~ge~v~~ 195 (403)
++ .+.+..+ -+.+..|+.|.........
T Consensus 135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 23 2332222 2235668877665444433
No 261
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.75 E-value=0.00043 Score=64.78 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+..++++.|.+|+||||++.+++....++|.+|++++++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4588999999999999999999987778899999999864
No 262
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.74 E-value=0.0008 Score=63.24 Aligned_cols=44 Identities=30% Similarity=0.461 Sum_probs=37.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE-EeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll-Vd~D~~r 55 (403)
..++.+++++|++||||||++..|+..+...+..+.+ +..|.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 4678999999999999999999999999987766666 7777654
No 263
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.73 E-value=9.6e-05 Score=72.84 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+++-+.|+.++||||++..+.+.+.+.|..+++||+.- ..|.. +..++-...- ++...+ +..+.+-.+++.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~---a~~lGvdl~r-llv~~P--~~~E~al~~~e~l 126 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY---AESLGVDLDR-LLVVQP--DTGEQALWIAEQL 126 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH---HHHTT--GGG-EEEEE---SSHHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH---HHhcCccccc-eEEecC--CcHHHHHHHHHHH
Confidence 478999999999999999999999999999999999852 12222 2222211111 221111 1223333334443
Q ss_pred -HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 94 -KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 94 -~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
+...+|+||||..+.+....++- ..+. +. .+-..|..-..+.+.+..+-...+..-|++|.+.
T Consensus 127 irsg~~~lVVvDSv~al~p~~E~e-------~~~~-~~-~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R 190 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAALVPKAELE-------GEIG-DQ-QVGLQARLMSQALRKLTPLLSKSNTTLIFINQVR 190 (322)
T ss_dssp HHTTSESEEEEE-CTT-B-HHHHT-------TSTS-ST-SSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEES
T ss_pred hhcccccEEEEecCcccCCHHHHh-------hccc-cc-cCcchHHHHHHHHHHHHHHHHhhceEEEEeehHH
Confidence 45678999999988875322211 1111 00 0011122223344444445556777889998875
No 264
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.73 E-value=0.00049 Score=71.74 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+-..-|+++|.++|||||+...|.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls 180 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALS 180 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHh
Confidence 334558899999999999998887
No 265
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.72 E-value=0.0023 Score=65.59 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=61.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
+..++++|.+|+||||+...|. |....++. + . +... . ......+ .
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~-~-~-~gtt-----~-~~~~~~~--------------------~ 216 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALL------GEERVIVS-D-I-AGTT-----R-DSIDIPF--------------------E 216 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCeeecC-C-C-CCce-----E-CcEeEEE--------------------E
Confidence 4558889999999999998876 33322221 1 0 0000 0 0000000 0
Q ss_pred hCCCcEEEEeCCCCcccc-----HHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d-----~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
..+..+.|+||||..... .+....+..+...-.+|.+++|+|+..+. .....+..........-+|+||+|..
T Consensus 217 ~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 217 RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 134579999999964221 11111112222233468899999995432 22222222222223345899999975
No 266
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.72 E-value=0.00024 Score=62.85 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=42.8
Q ss_pred EEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCC-chhHHHHHHHH
Q 015657 102 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDS-RGGAALSVKEV 179 (403)
Q Consensus 102 IIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~-~~~~~~~~~~~ 179 (403)
+|||||..........++.. ..-.++.+++|+|+........ .+..+.... ..-+++||.|... ....+....+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~-~ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLPAGLLDIGVSK-RQIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred cccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccCHHHHhccCCC-CeEEEEEccccCcccHHHHHHHHHH
Confidence 58999975433333333222 1235689999999965432211 112222222 3458999999643 22223344444
Q ss_pred hCC--CeEEe
Q 015657 180 SGK--PIKLV 187 (403)
Q Consensus 180 ~g~--pi~fi 187 (403)
.+. |+.++
T Consensus 118 ~~~~~p~~~~ 127 (158)
T PRK15467 118 TGFEEPIFEL 127 (158)
T ss_pred cCCCCCEEEE
Confidence 453 55433
No 267
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.71 E-value=0.00088 Score=68.10 Aligned_cols=191 Identities=15% Similarity=0.202 Sum_probs=100.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+--|+++|.|.+||||+...|. |..-++++.- |+.. ......++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~~---aGTT------RD~I~~~~-------------------- 221 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL------GEERVIVSDI---AGTT------RDSIDIEF-------------------- 221 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc------cCceEEecCC---CCcc------ccceeeeE--------------------
Confidence 45668999999999999998887 5433344311 1110 00111111
Q ss_pred HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.+++..|++|||+|.-.- ..+.......+..+-.++-+++|+|+..+ +.-.+++....+...-.-|++||+|.
T Consensus 222 e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl 301 (444)
T COG1160 222 ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDL 301 (444)
T ss_pred EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 135778999999996431 11222222333333345888999999654 33344444444444445589999997
Q ss_pred CCch-hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHH
Q 015657 167 DSRG-GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 245 (403)
Q Consensus 167 ~~~~-~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~e 245 (403)
-... .......+.......|++. .|.-++|...|-+ +..+++.+.+.... ....++-.
T Consensus 302 ~~~~~~~~~~~k~~i~~~l~~l~~----------a~i~~iSA~~~~~-i~~l~~~i~~~~~~----------~~~ri~Ts 360 (444)
T COG1160 302 VEEDEATMEEFKKKLRRKLPFLDF----------APIVFISALTGQG-LDKLFEAIKEIYEC----------ATRRISTS 360 (444)
T ss_pred CCchhhHHHHHHHHHHHHhccccC----------CeEEEEEecCCCC-hHHHHHHHHHHHHH----------hccccCHH
Confidence 5542 2223333332222222322 2223334444443 23444434433311 13456667
Q ss_pred HHHHHHHHHHhcCCh
Q 015657 246 DFLKQTRTVARMGSM 260 (403)
Q Consensus 246 dl~~ql~~~~k~g~~ 260 (403)
.|-+-++.+..+.|+
T Consensus 361 ~LN~~l~~a~~~~pP 375 (444)
T COG1160 361 LLNRVLEDAVAKHPP 375 (444)
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777777777643
No 268
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.71 E-value=0.00027 Score=66.77 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh------------CCCcEEEEeccCCChhhHHHHHHhhhccCC------ceEeCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK------------QGKSCMLVAGDVYRPAAIDQLVILGEQVGV------PVYTAG 77 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~------------~G~kVllVd~D~~rp~~~~~l~~~~~~~gv------~v~~~~ 77 (403)
.+.+++|++|+||||++..+|...+. .+.+|++++++-........+.......+. .++..+
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 46788999999999999999987662 467899999886554444444333332211 111110
Q ss_pred C---------C-CCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657 78 T---------E-VKPSQIAKQGLEEAKKKNVDVVIVDTAG 107 (403)
Q Consensus 78 ~---------~-~~~~~~~~~~l~~~~~~~~D~VIIDtpg 107 (403)
. . ......+...++.+...++++||||+..
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~ 121 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLV 121 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChH
Confidence 0 0 1122334444444544689999999543
No 269
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.71 E-value=0.00022 Score=62.63 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
+++++|.+||||||++..|+..+...|.++.+++.|..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5789999999999999999999998899998899885543
No 270
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.70 E-value=0.00016 Score=79.29 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCc----EEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~k----VllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
.+.|.|+++|+.++||||++.+|......-..+ ..+.|.+ + .++ ..|+.+........
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~---~--~E~------~rgiTi~~~~~~~~------- 79 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFD---E--EEQ------ARGITIKAANVSMV------- 79 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCcc---H--HHH------HhhhhhhccceEEE-------
Confidence 456889999999999999999998654321111 1111111 0 011 11121111100000
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLD 165 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D 165 (403)
+ .....++.+.+|||||...+.......+ . ..|.+++|+|+..+ ......+.. .....++ -+++||+|
T Consensus 80 -~-~~~~~~~~i~liDtPG~~df~~~~~~~l----~--~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D 150 (731)
T PRK07560 80 -H-EYEGKEYLINLIDTPGHVDFGGDVTRAM----R--AVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVD 150 (731)
T ss_pred -E-EecCCcEEEEEEcCCCccChHHHHHHHH----H--hcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECch
Confidence 0 0011467899999999875432222222 2 23889999999544 222222222 2233443 58899999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 151 ~~ 152 (731)
T PRK07560 151 RL 152 (731)
T ss_pred hh
Confidence 64
No 271
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.69 E-value=0.00015 Score=66.63 Aligned_cols=92 Identities=22% Similarity=0.372 Sum_probs=48.2
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH--HHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI--DQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~--~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
+...|+++++.|.+||||||++..+...+. +...++|+.|.++.... +.+....... .... .......+...
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~-~~~~---~~~~a~~~~~~ 84 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDE-ASEL---TQKEASRLAEK 84 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCC-THHH---HHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhh-hHHH---HHHHHHHHHHH
Confidence 346799999999999999999998887765 56777999998774331 2221111000 0000 00112234456
Q ss_pred HHHHHHhCCCcEEEEeCCCCc
Q 015657 89 GLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l 109 (403)
.++.+...++++| +||....
T Consensus 85 ~~~~a~~~~~nii-~E~tl~~ 104 (199)
T PF06414_consen 85 LIEYAIENRYNII-FEGTLSN 104 (199)
T ss_dssp HHHHHHHCT--EE-EE--TTS
T ss_pred HHHHHHHcCCCEE-EecCCCC
Confidence 6666666778755 5987764
No 272
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.69 E-value=0.00023 Score=66.30 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC------CcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG------KSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G------~kVllVd~D~ 53 (403)
...++.|+|.+|+|||+++..++......+ .+|++++++-
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 357899999999999999999999887777 8999999874
No 273
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.004 Score=67.54 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 91 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~ 91 (403)
-+..++|+|+.|+||||++..||+.|--. +. +..+.. ............-.+++..+. .....+.+++.++
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-----~~~PCG--~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe 109 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-----TSQPCG--VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLE 109 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-----CCCCCc--ccHHHHHHhcCCCceEEEecccccccHHHHHHHHH
Confidence 46778899999999999999999888532 21 111111 001111111111122333222 1223444555555
Q ss_pred HHH----hCCCcEEEEeCCCCcc
Q 015657 92 EAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 92 ~~~----~~~~D~VIIDtpg~l~ 110 (403)
.+. ..+|.++|||-.-.+.
T Consensus 110 ~a~~~P~~gr~KVIIIDEah~LT 132 (830)
T PRK07003 110 RAVYAPVDARFKVYMIDEVHMLT 132 (830)
T ss_pred HHHhccccCCceEEEEeChhhCC
Confidence 442 2468899999888775
No 274
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.68 E-value=0.00082 Score=59.01 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
.|+++|.+|+||||+...|.
T Consensus 2 ~i~~~G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 47899999999999998876
No 275
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.68 E-value=0.00042 Score=60.29 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhh---cCC-eeEEEEccCCCCC-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI---EIG-ITGAILTKLDGDS- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~---~~~-i~GvIlNk~D~~~- 168 (403)
.+.+.|+||||....... .... .-..+.+++|+|....... ......+.. ..+ ..-+|+||+|...
T Consensus 47 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 47 DVQLNILDTAGQEDYAAI----RDNY--HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred EEEEEEEECCChhhhhHH----HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 567999999997533211 1111 1233778888887544322 222222211 122 2458999999643
Q ss_pred c---hhHHHHHHHHhCCCeE
Q 015657 169 R---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 169 ~---~~~~~~~~~~~g~pi~ 185 (403)
. ...........+.|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 121 RQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred cccCHHHHHHHHHHhCCeEE
Confidence 1 1223344455666663
No 276
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=7.1e-05 Score=74.54 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=94.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.+-|.+...-.+||||++..+.++...- + +.+|+..-..+.++.......|+.+..+... +
T Consensus 36 kirnigiiahidagktttterily~ag~~--~---s~g~vddgdtvtdfla~erergitiqsaav~-------------f 97 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAI--H---SAGDVDDGDTVTDFLAIERERGITIQSAAVN-------------F 97 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhh--h---cccccCCCchHHHHHHHHHhcCceeeeeeee-------------c
Confidence 34778888999999999999998655321 1 1233333334445545566678877755322 2
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCee-EEEEccCCCC--Cc
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGIT-GAILTKLDGD--SR 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~-GvIlNk~D~~--~~ 169 (403)
.|++|.+.+|||||...+.-++-. -.+++ |.++.|.|+..|-++.. .+|......++. ..++||+|.. ..
T Consensus 98 dwkg~rinlidtpghvdf~lever----clrvl--dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 98 DWKGHRINLIDTPGHVDFRLEVER----CLRVL--DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred ccccceEeeecCCCcceEEEEHHH----HHHHh--cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhh
Confidence 378999999999998865333222 22333 78899999977744433 234444455553 4789999964 44
Q ss_pred hhHHHHHHHHhCC
Q 015657 170 GGAALSVKEVSGK 182 (403)
Q Consensus 170 ~~~~~~~~~~~g~ 182 (403)
..++.++.+.+|.
T Consensus 172 e~avdsi~ekl~a 184 (753)
T KOG0464|consen 172 ENAVDSIEEKLGA 184 (753)
T ss_pred hhHHHHHHHHhCC
Confidence 5667888888875
No 277
>COG4240 Predicted kinase [General function prediction only]
Probab=97.67 E-value=0.00019 Score=66.67 Aligned_cols=44 Identities=30% Similarity=0.484 Sum_probs=39.4
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVY 54 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G-~kVllVd~D~~ 54 (403)
..+.|-|+.|+|++||||||++..|-..|+.+| ++++-.+.|-+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 456799999999999999999999999999998 79998888843
No 278
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.67 E-value=0.00028 Score=60.48 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHhhhc---CCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIE---IGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~~~~---~~i~GvIlNk~D~~ 167 (403)
..+++.|+|+||...... ..... .-..+.+++|+|+..... +......+... ....-+|+||+|..
T Consensus 47 ~~~~~~l~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 47 KTVKLQIWDTAGQERFRS----ITPSY--YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEEecCChHHHHH----HHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 357899999999743211 11111 123588899999955322 22222222221 23456899999984
No 279
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.66 E-value=0.00074 Score=69.26 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
.-|+++|.++|||||+...|. +.++-+.+ -++. ++....+ ++.. .
T Consensus 159 adVglVG~pNaGKSTLLn~Lt------~ak~kIa~-ypfT--------Tl~PnlG--~v~~------------------~ 203 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVS------NAKPKIAN-YHFT--------TLVPNLG--VVET------------------D 203 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHH------cCCCcccc-CCcc--------eeceEEE--EEEE------------------e
Confidence 358999999999999998887 23332111 0110 1111111 1111 1
Q ss_pred CCCcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEecccH------HHHHHH---HHHhhhc--CCeeEEEE
Q 015657 96 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEAAAL---VTTFNIE--IGITGAIL 161 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~g------~~~~~~---~~~~~~~--~~i~GvIl 161 (403)
.++.++|+|+||...- ...+... -+..+-.++-+++|+|+... ++.... +..+.+. -...-||+
T Consensus 204 ~~~~~~laD~PGliega~~~~gLg~~--fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 204 DGRSFVMADIPGLIEGASEGVGLGHQ--FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred CCceEEEEECCCCcccccccchHHHH--HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 2567999999997632 1112111 11222235788999998421 222222 2223221 23455899
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEE
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKL 186 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~f 186 (403)
||+|.......+..+.+.++.++.+
T Consensus 282 NK~DL~~~~e~l~~l~~~l~~~i~~ 306 (424)
T PRK12297 282 NKMDLPEAEENLEEFKEKLGPKVFP 306 (424)
T ss_pred eCCCCcCCHHHHHHHHHHhCCcEEE
Confidence 9999743333444555556655533
No 280
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66 E-value=0.00093 Score=62.07 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=35.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+..++++|++|+||||++..++..+...+.++..++++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 4567789999999999999999999988888899888876
No 281
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.66 E-value=0.00035 Score=66.46 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..+++.|++|+|||+++.+++.+|.++|++|++++.. .....+. ... . ..... ..+.+..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~----~l~~~l~---~~~-----~-~~~~~----~~~~l~~l-- 160 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA----DIMSAMK---DTF-----S-NSETS----EEQLLNDL-- 160 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH----HHHHHHH---HHH-----h-hcccc----HHHHHHHh--
Confidence 4688999999999999999999999999999988642 1222221 111 0 00011 12334444
Q ss_pred CCCcEEEEeCCCCccc
Q 015657 96 KNVDVVIVDTAGRLQI 111 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~ 111 (403)
..+|++|||-.|....
T Consensus 161 ~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 161 SNVDLLVIDEIGVQTE 176 (244)
T ss_pred ccCCEEEEeCCCCCCC
Confidence 4799999999987653
No 282
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.66 E-value=0.00017 Score=69.21 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
+|+|+|.+||||||++..|+..|.+.|.+|.+++.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999999999999999999998765
No 283
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.65 E-value=0.0004 Score=63.84 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.+++.|+.||||||.|..+-.+...-|+.+-+|..||..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 356779999999999999999999999999999999643
No 284
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.65 E-value=0.00027 Score=68.98 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=64.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+|+|.|.|||||+..+|. +-++-+-+ | ++. .+...+-.+ .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA~---Y------PFT--TK~i~vGhf-------------------e 211 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVAP---Y------PFT--TKGIHVGHF-------------------E 211 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHh------cCCCccCC---C------Ccc--ccceeEeee-------------------e
Confidence 3558999999999999998877 33332111 1 111 111112111 1
Q ss_pred hCCCcEEEEeCCCCccccHHh-----HHHHHHHhhhcCCceEEEEEecc--cH---HHHHHHHHHhhhcCC-eeEEEEcc
Q 015657 95 KKNVDVVIVDTAGRLQIDKAM-----MDELKDVKRVLNPTEVLLVVDAM--TG---QEAAALVTTFNIEIG-ITGAILTK 163 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l-----~~el~~i~~~~~~~~vllVvda~--~g---~~~~~~~~~~~~~~~-i~GvIlNk 163 (403)
.....+=+|||||.+.-+.+- ...+.++. .+ .+.+++++|++ .| +....+.....+.+. +.-+|+||
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-hl-~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK 289 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-HL-AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINK 289 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-Hh-cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 134478899999999753221 11222222 22 26789999983 33 333444444444444 46689999
Q ss_pred CCCC
Q 015657 164 LDGD 167 (403)
Q Consensus 164 ~D~~ 167 (403)
+|..
T Consensus 290 ~D~~ 293 (346)
T COG1084 290 IDIA 293 (346)
T ss_pred cccc
Confidence 9965
No 285
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.65 E-value=0.0011 Score=64.04 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh----------ccCCceEeCCCCCCHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE----------QVGVPVYTAGTEVKPS 83 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~----------~~gv~v~~~~~~~~~~ 83 (403)
+..+-+++|--|+||||+...++ ..+.|+|+.++-...--...++....... ..+--|++.......+
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred ccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 44667889999999999996665 34569999988755322222221111000 0111233322233445
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHH---HHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhhh---cC
Q 015657 84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMD---ELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFNI---EI 154 (403)
Q Consensus 84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~---el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~~---~~ 154 (403)
..+.+.++ +...||+|+++|.|.... ..+.. .=..+..-+.-|.++-|+||....-...-.+ .+++ ++
T Consensus 134 raie~lvq--kkGkfD~IllETTGlAnP-aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi 210 (391)
T KOG2743|consen 134 RAIENLVQ--KKGKFDHILLETTGLANP-APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI 210 (391)
T ss_pred HHHHHHHh--cCCCcceEEEeccCCCCc-HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence 55555555 357899999999987542 11111 0112223334478899999854322211110 0111 11
Q ss_pred C-eeEEEEccCCCCCc
Q 015657 155 G-ITGAILTKLDGDSR 169 (403)
Q Consensus 155 ~-i~GvIlNk~D~~~~ 169 (403)
. -..+|+||+|.-..
T Consensus 211 A~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 211 ALADRIIMNKTDLVSE 226 (391)
T ss_pred hhhheeeeccccccCH
Confidence 1 24599999997655
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.64 E-value=0.0022 Score=63.22 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEec
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAG 51 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd~ 51 (403)
.++++|++|+||||++..++..+...+ .++..+++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 578999999999999999999887544 34445554
No 287
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.64 E-value=0.00045 Score=72.01 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..|+++|.+||||||+...|+ |.+..++. + .|.. ..+.+... .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~-~--~~gv-----------T~d~~~~~---------------~ 81 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL------GRREAVVE-D--VPGV-----------TRDRVSYD---------------A 81 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CcCccccc-C--CCCC-----------CEeeEEEE---------------E
Confidence 34558999999999999998887 33332222 1 1111 00001000 0
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
...+..+.|+||||.......+...+... ...-.++.+++|+|+..+ ......+..+...-...-+|+||+|...
T Consensus 82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 12456789999999653222221111111 112246899999999643 2222233333322234458999999753
No 288
>PHA00729 NTP-binding motif containing protein
Probab=97.64 E-value=0.0002 Score=67.18 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.....|+++|+||+||||+|..|+..+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999998875
No 289
>PRK06893 DNA replication initiation factor; Validated
Probab=97.64 E-value=0.0013 Score=61.85 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+.+.|++|+|||+++.+++..+.++|.+|.++.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4578999999999999999999999889999888764
No 290
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.64 E-value=0.0012 Score=63.21 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l 62 (403)
+.++++++|.+|+|||+++.+++...++.|.+|++|..|-.......++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHH
Confidence 3588999999999999999999999999999999999996554444443
No 291
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.63 E-value=0.00038 Score=62.92 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~ 167 (403)
.++.+.++|+||..... .+. .. .....+.+++|+|+......... ...+.. .-.+.-+|+||.|..
T Consensus 59 ~~~~~~~~D~~G~~~~~-~~~---~~--~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 59 GNIKFTTFDLGGHQQAR-RLW---KD--YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CCEEEEEEECCCCHHHH-HHH---HH--HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 46789999999974321 111 11 11245889999999654322221 111111 112355899999964
No 292
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.63 E-value=9.4e-05 Score=79.08 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
.++++.|+|..||||||++.+|...|.++|++|.+|..|-
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 4689999999999999999999999999999999999853
No 293
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=7.7e-05 Score=68.51 Aligned_cols=44 Identities=36% Similarity=0.563 Sum_probs=39.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
..+|.+|+++|.+||||||++..|+..|...|..+.+++.|..+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 35789999999999999999999999998889989999999655
No 294
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=97.61 E-value=0.0019 Score=62.84 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 31 VSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 31 la~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+++++|.+++++|++|++||+|++.
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3688999999999999999999875
No 295
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.60 E-value=0.00056 Score=59.57 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-hh---cCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-NI---EIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~~---~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+|+||....... .... ...++.+++|+|+......... .... .. .-...-+|+||.|..
T Consensus 43 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTV----WKCY--LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred ceEEEEEECCCCHhHHHH----HHHH--hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 478999999996432111 1111 2245888999999654322222 2211 11 112345899999974
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.60 E-value=0.00018 Score=61.87 Aligned_cols=31 Identities=35% Similarity=0.666 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|+++|++||||||++..|+..+. ..+|+.|
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D 31 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQD 31 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHH
Confidence 588999999999999987775543 5678877
No 297
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.60 E-value=0.0002 Score=67.08 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=51.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
|..++++|++|+||||++..|+ .++++++.|-- ...+....++++...+. ..+.+.+.+.+..+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~-------~~~l~g~~~~~v~~~d~-~~~~~~~~d~l~~~~ 76 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS-------SKVLIGDENVDIADHDD-MPPIQAMVEFYVMQN 76 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc-------chhccCCCCCceeecCC-CCCHHHHHHHHHHHH
Confidence 5669999999999999997774 46778898832 11122233455554322 234444444454443
Q ss_pred --hCCCcEEEEeCCCCc
Q 015657 95 --KKNVDVVIVDTAGRL 109 (403)
Q Consensus 95 --~~~~D~VIIDtpg~l 109 (403)
..+||.|+||+...+
T Consensus 77 ~~~~~ydtVVIDsI~~l 93 (220)
T TIGR01618 77 IQAVKYDNIVIDNISAL 93 (220)
T ss_pred hccccCCEEEEecHHHH
Confidence 357999999998875
No 298
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.59 E-value=0.00011 Score=79.37 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=37.8
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+++.++||||||...+...+.. .+..+|.+++|+|+..+ + +....+..+ ..+..-|++||+|..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~------~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~--~~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVT------GASTADLAIILVDARKGVLTQTRRHSFIASLL--GIRHVVLAVNKMDLV 170 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHH------HHHhCCEEEEEEECCCCccccCHHHHHHHHHh--CCCeEEEEEEecccc
Confidence 36778999999995432222221 22345889999999543 1 222222222 223334789999975
No 299
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.58 E-value=0.00041 Score=60.44 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+++.++|+||..... ...... ...++.+++|+|+......... ...+.. .-.+.-+|.||+|....
T Consensus 48 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 48 RVKLQIWDTAGQERFR----SITSSY--YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEEEECCChHHHH----HHHHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 3678899999964221 111111 1235889999998654333222 122211 12345589999996542
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (164)
T smart00175 122 QVSREEAEAFAEEHGLPF 139 (164)
T ss_pred CCCHHHHHHHHHHcCCeE
Confidence 233444555566664
No 300
>PF13479 AAA_24: AAA domain
Probab=97.57 E-value=0.00016 Score=67.27 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=49.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++..++|.|.+|+||||++..+ -+++++|+|.-.-. +..+. +.+.+... ..+.+.+.+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~----~~~~~---~~~~i~i~----s~~~~~~~~~~l 62 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS----LKFLD---DGDVIPIT----SWEDFLEALDEL 62 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc----hhhhc---CCCeeCcC----CHHHHHHHHHHH
Confidence 4567899999999999999766 58999999833111 11111 23333322 344444555443
Q ss_pred H--hCCCcEEEEeCCCCc
Q 015657 94 K--KKNVDVVIVDTAGRL 109 (403)
Q Consensus 94 ~--~~~~D~VIIDtpg~l 109 (403)
. ..+||.||||+...+
T Consensus 63 ~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 63 EEDEADYDTIVIDSISWL 80 (213)
T ss_pred HhccCCCCEEEEECHHHH
Confidence 2 368999999998865
No 301
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.57 E-value=8.5e-05 Score=67.31 Aligned_cols=39 Identities=38% Similarity=0.530 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+|+|+|.+||||||+|..|+..+...|.++.++..|-+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 588999999999999999999999999999999999553
No 302
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.56 E-value=0.00013 Score=63.60 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE-EEeccC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDV 53 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl-lVd~D~ 53 (403)
+|+|+|..||||||++..|..+|.++|++|. +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 6899999999999999999999999999998 677776
No 303
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.56 E-value=0.0012 Score=63.03 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=67.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHH--HHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPS--QIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~--~~~~~~ 89 (403)
+..+++|.|.+|+||||++.++|..++.. |++|++++.+.........+ ++...+++...... ...+. +.+.++
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~--la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARL--LARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHH--HHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH--HHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 45788999999999999999999999987 69999999986554443332 23333443221111 11122 233445
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
...+ ....+.|.|++.. .. ..+...+..+.... ...-++|||.
T Consensus 96 ~~~l--~~~~l~i~~~~~~-~~-~~i~~~i~~~~~~~-~~~~~v~IDy 138 (259)
T PF03796_consen 96 AEKL--SDLPLYIEDTPSL-TI-DDIESKIRRLKREG-KKVDVVFIDY 138 (259)
T ss_dssp HHHH--HTSEEEEEESSS--BH-HHHHHHHHHHHHHS-TTEEEEEEEE
T ss_pred HHHH--hhCcEEEECCCCC-CH-HHHHHHHHHHHhhc-cCCCEEEech
Confidence 5555 3556777887753 22 22223333333332 2334777786
No 304
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00029 Score=74.66 Aligned_cols=135 Identities=25% Similarity=0.280 Sum_probs=84.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..++++|.|.|||||+-.+|. |-+.-+ +.=.|+.+-.... .++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------G~~q~V-----------------gNwpGvTVEkkeg-------------~~~~ 47 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------GANQKV-----------------GNWPGVTVEKKEG-------------KLKY 47 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------ccCcee-----------------cCCCCeeEEEEEE-------------EEEe
Confidence 348999999999999998887 433321 1112232221100 0012
Q ss_pred CCCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhh-hcCCeeEEEEccCCCCCchhH
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN-IEIGITGAILTKLDGDSRGGA 172 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~~~~ 172 (403)
.++++-|||.||....+....+|. .++...-.||-++-|+||+.-+......-.+. -+.+ .-+.+|++|...+.|.
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRGI 126 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCC
Confidence 578899999999987633322322 22233346789999999977655555443333 3334 5589999998766544
Q ss_pred ---HHHHHHHhCCCeEEe
Q 015657 173 ---ALSVKEVSGKPIKLV 187 (403)
Q Consensus 173 ---~~~~~~~~g~pi~fi 187 (403)
...+.+.+|+||..+
T Consensus 127 ~ID~~~L~~~LGvPVv~t 144 (653)
T COG0370 127 RIDIEKLSKLLGVPVVPT 144 (653)
T ss_pred cccHHHHHHHhCCCEEEE
Confidence 355777899999644
No 305
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.55 E-value=0.00059 Score=59.96 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhhh---cCCeeEEEEccCCCCCch
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFNI---EIGITGAILTKLDGDSRG 170 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~~---~~~i~GvIlNk~D~~~~~ 170 (403)
.+.+-|+||||..... ...... .-.++.+++|+|+....+...... .+.. .-...-+|.||.|.....
T Consensus 50 ~~~~~i~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 50 TIKLQIWDTAGQERFR----TITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEEECCCcHhHH----HHHHHH--hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 4678899999954221 111111 124588899999966544433322 1111 112344788999964321
Q ss_pred ----hHHHHHHHHhCCCe
Q 015657 171 ----GAALSVKEVSGKPI 184 (403)
Q Consensus 171 ----~~~~~~~~~~g~pi 184 (403)
..+.......+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01869 124 VVDYSEAQEFADELGIPF 141 (166)
T ss_pred CCCHHHHHHHHHHcCCeE
Confidence 23344455566665
No 306
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.55 E-value=0.0011 Score=58.63 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA 36 (403)
...++++|++||||||+...|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh
Confidence 4558999999999999998775
No 307
>PRK08760 replicative DNA helicase; Provisional
Probab=97.54 E-value=0.0015 Score=68.15 Aligned_cols=145 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~ 89 (403)
+..+++|.|.+|+||||++.++|...+. .|++|+++.++.........+. +...+++...... .... ...+..+
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~--a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLI--SSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHH--HhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 4578888999999999999999998875 5999999998855443333321 2222232211111 1222 2234455
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---c--cH------H---HHHHHHHHhhhcCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---M--TG------Q---EAAALVTTFNIEIG 155 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~--~g------~---~~~~~~~~~~~~~~ 155 (403)
+..+. +..+.|-|+|+ +.. ..+...+..+..... .-++|||. . .+ + .+.+.++.+...++
T Consensus 306 ~~~l~--~~~l~I~d~~~-~t~-~~I~~~~r~l~~~~~--~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 379 (476)
T PRK08760 306 IKMLK--ETKIFIDDTPG-VSP-EVLRSKCRRLKREHD--LGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN 379 (476)
T ss_pred HHHHh--cCCEEEeCCCC-CCH-HHHHHHHHHHHHhcC--CCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 55553 45666666665 332 222233333332222 23677775 1 01 1 23334455667788
Q ss_pred eeEEEEccCCC
Q 015657 156 ITGAILTKLDG 166 (403)
Q Consensus 156 i~GvIlNk~D~ 166 (403)
+..|++..+..
T Consensus 380 ipVi~lsQLnR 390 (476)
T PRK08760 380 VPVIALSQLNR 390 (476)
T ss_pred CEEEEeeccCc
Confidence 88788877754
No 308
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.54 E-value=0.00062 Score=60.41 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+|+||...... + ... ....++.+++|+|+...... ......+.. .-.+.-+|.||.|...
T Consensus 41 ~~~~~~i~D~~G~~~~~~-~---~~~--~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 41 DKYEVCIFDLGGGANFRG-I---WVN--YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CCEEEEEEECCCcHHHHH-H---HHH--HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 467899999999642211 1 111 12245889999998654322 222222211 1123458999999654
No 309
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.54 E-value=0.0022 Score=66.08 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=78.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHHH--HHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQI--AKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~--~~~~ 89 (403)
+..+++|+|.+|+||||++.++|..++. .|++|+++.++.........+ .+...+++..... ......+. +..+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~--~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRM--LSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 3478899999999999999999999875 699999999986544433332 1222233321111 11222222 3444
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c-------H-HHH---HHHHHHhhhcCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T-------G-QEA---AALVTTFNIEIG 155 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~-------g-~~~---~~~~~~~~~~~~ 155 (403)
...+. +..+.|-|+++ +..+ .+...+..+..... .-++|||.. . . ++. ...++.+....+
T Consensus 272 ~~~l~--~~~l~i~d~~~-~~~~-~i~~~i~~~~~~~~--~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~ 345 (434)
T TIGR00665 272 AGKLS--EAPLYIDDTPG-LTIT-ELRAKARRLKREHG--LGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELN 345 (434)
T ss_pred HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44442 34455555544 2221 22222233332222 226666751 0 0 111 233445566777
Q ss_pred eeEEEEccCCC
Q 015657 156 ITGAILTKLDG 166 (403)
Q Consensus 156 i~GvIlNk~D~ 166 (403)
+..++++.+..
T Consensus 346 i~vi~lsqlnr 356 (434)
T TIGR00665 346 VPVIALSQLSR 356 (434)
T ss_pred CeEEEEeccCc
Confidence 87788877654
No 310
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=0.00011 Score=61.40 Aligned_cols=31 Identities=39% Similarity=0.644 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|+|+|++||||||+|..||..+ |..+ ++.|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEec
Confidence 68999999999999999998777 5554 4554
No 311
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.53 E-value=0.00016 Score=66.85 Aligned_cols=41 Identities=34% Similarity=0.518 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.++.+|+|+|.+||||||++..|+..+ .+..+.+++.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 468899999999999999999999988 45688899998753
No 312
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.012 Score=65.35 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=49.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+..++|+|+.|+||||++..||+.|-= .|.... -|.... ....+. .+....++++..+. ....++.+++..
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--pCg~C~--sC~~~~-~g~~~~~dv~eidaas~~~Vd~iR~l~ 109 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCGECD--SCVALA-PGGPGSLDVTEIDAASHGGVDDARELR 109 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--CCcccH--HHHHHH-cCCCCCCcEEEecccccCCHHHHHHHH
Confidence 34567899999999999999999988852 221100 111111 111111 11112233333222 222344444443
Q ss_pred HHHH----hCCCcEEEEeCCCCccc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~~ 111 (403)
+.+. ...|.++|||-+-.+..
T Consensus 110 ~~~~~~p~~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 110 ERAFFAPAESRYKIFIIDEAHMVTP 134 (824)
T ss_pred HHHHhchhcCCceEEEEechhhcCH
Confidence 3321 35788999998877753
No 313
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.53 E-value=0.00073 Score=66.21 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.....|+++|.+|+||||+...|. |.++..++. +.+.. ........
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s~t----------~~~~~~~~---------------- 81 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQSEG----------LRPMMVSR---------------- 81 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCCcc----------eeEEEEEE----------------
Confidence 345668999999999999998888 666644331 11110 00000100
Q ss_pred HHhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEE--ecc-cH---HHHHHHHH-HhhhcC-CeeEEEE
Q 015657 93 AKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVV--DAM-TG---QEAAALVT-TFNIEI-GITGAIL 161 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVv--da~-~g---~~~~~~~~-~~~~~~-~i~GvIl 161 (403)
...++.+.||||||..... ......+..+.....++.+++|. |.. .. ..+...+. .|.+.+ ...-|++
T Consensus 82 -~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 82 -TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred -EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 0146789999999987531 22222222222222467777774 331 11 23333332 343332 3355888
Q ss_pred ccCCCC
Q 015657 162 TKLDGD 167 (403)
Q Consensus 162 Nk~D~~ 167 (403)
|+.|..
T Consensus 161 Th~d~~ 166 (313)
T TIGR00991 161 THAQFS 166 (313)
T ss_pred ECCccC
Confidence 999844
No 314
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.53 E-value=0.0013 Score=65.40 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~r 55 (403)
+++++|++|+||||++..|+.+|. ..|++|.+++.|-+=
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 368899999999999999999998 589999999999654
No 315
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.52 E-value=0.00065 Score=68.97 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.+|.+|.|+|.+||||||++..|...+...|.++..|..|-+-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3789999999999999999999998888778899999888654
No 316
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.52 E-value=0.00037 Score=65.36 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~ 53 (403)
+..++.++|.+|+||||++..++...... +.+|++++++-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 35889999999999999999999775543 37899999875
No 317
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.51 E-value=0.0013 Score=55.84 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
-|+++|.+||||||+...|.
T Consensus 3 ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999997776
No 318
>PLN02796 D-glycerate 3-kinase
Probab=97.51 E-value=0.00063 Score=67.58 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=37.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.+|.+|.|+|.+||||||++..|...+...|.++..|..|-+-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4688999999999999999999999998778888888877543
No 319
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.51 E-value=0.00071 Score=60.14 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=36.6
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-h---hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-N---IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~---~~~~i~GvIlNk~D~~~ 168 (403)
++.+.++||||...... + .... ...++.+++|+|+......... ...+ . ..-...-+|+||+|...
T Consensus 57 ~~~l~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 57 GYKLNIWDVGGQKTLRP-Y---WRNY--FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CEEEEEEECCCCHHHHH-H---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 57889999999643211 1 1111 2245888999999655332222 1111 1 11123448999999643
No 320
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.51 E-value=0.00029 Score=62.24 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKL 164 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~ 164 (403)
..+++||||||....+..-..-+.... -..+.+++|+++.. ..+.....+.........-+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999998653221111112222 34578889998843 2344444444444555577888884
No 321
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.50 E-value=0.0014 Score=57.18 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhh---hcCC-eeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN---IEIG-ITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~---~~~~-i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||...... +.. ... ...+.+++|+|........... ..+. ...+ +.-+|.||+|....
T Consensus 49 ~~~~~i~Dt~G~~~~~~-~~~---~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 49 WAILDILDTAGQEEFSA-MRE---QYM--RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEEECCCCcchhH-HHH---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 35688999999653321 111 111 2347889999986544332221 1111 1112 34478999996532
Q ss_pred h----hHHHHHHHHhCCCe
Q 015657 170 G----GAALSVKEVSGKPI 184 (403)
Q Consensus 170 ~----~~~~~~~~~~g~pi 184 (403)
. .......+..+.|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04145 123 RKVSREEGQELARKLKIPY 141 (164)
T ss_pred ceecHHHHHHHHHHcCCcE
Confidence 2 12233444455555
No 322
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.50 E-value=0.00058 Score=57.49 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=35.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
....++++|++|+||||++..++..+...+.+|..+++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 456789999999999999999999998778899888877443
No 323
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.50 E-value=0.0009 Score=59.68 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
+-|+++|.+|+||||+...+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999997776
No 324
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.50 E-value=0.0021 Score=66.04 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~ 89 (403)
+..++++.|.+|+||||++.++|..++ +.|++|++++++.........+ .+...+++...... .... ...+..+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 457889999999999999999998887 6799999999885433332222 23333444322111 1222 2234455
Q ss_pred HHHHHhCCCcEEEEeCCC
Q 015657 90 LEEAKKKNVDVVIVDTAG 107 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg 107 (403)
+..+ .+..+.|-|+++
T Consensus 271 ~~~l--~~~~l~i~d~~~ 286 (421)
T TIGR03600 271 VDRL--SEKDLYIDDTGG 286 (421)
T ss_pred HHHH--hcCCEEEECCCC
Confidence 5555 345666666654
No 325
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.50 E-value=0.00066 Score=58.67 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh-cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI-EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~-~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.++|+||....... . ... ....+.+++|+|....+..... ... ... ...+.-+|+||+|....
T Consensus 46 ~~~~~l~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 46 TYTLDILDTAGQEEFSAM-R---DLY--IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEEECCChHHHHHH-H---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 477899999996532111 1 111 1234788899898654433222 221 222 12334589999996542
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~ 138 (160)
T cd00876 120 RQVSKEEGKALAKEWGCPF 138 (160)
T ss_pred ceecHHHHHHHHHHcCCcE
Confidence 123333444445555
No 326
>PLN03118 Rab family protein; Provisional
Probab=97.50 E-value=0.0018 Score=59.84 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH-------hhhcCC-eeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-------FNIEIG-ITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~-------~~~~~~-i~GvIlNk~D~~ 167 (403)
.+.+.|+||||...... +. ... ....+.+++|+|....++....... +..... +.-+|.||+|..
T Consensus 61 ~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 61 RLKLTIWDTAGQERFRT-LT---SSY--YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEEEECCCchhhHH-HH---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 47889999999754321 11 111 1235788999999765444333221 111111 234788999964
No 327
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.0024 Score=66.04 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.-+.+.|++|+|||+++..++..+...|.+|+.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4578999999999999999999999889999988866
No 328
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00036 Score=61.92 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+++++++|-+|+||||++..+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999998777666
No 329
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0016 Score=62.71 Aligned_cols=149 Identities=24% Similarity=0.267 Sum_probs=85.0
Q ss_pred cccCCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657 9 VFAKSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87 (403)
Q Consensus 9 ~~~~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~ 87 (403)
+|...+| -.|..+|.-.-||||+++++...|++.|... ..+-| .++.. ...+..|+.+-++..+.
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~-~~~y~-----~id~a-PeEk~rGITIntahvey------- 70 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAE-AKAYD-----QIDNA-PEEKARGITINTAHVEY------- 70 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhcccc-ccchh-----hhccC-chHhhcCceeccceeEE-------
Confidence 4555555 4466779999999999999999999887332 12212 11111 12234455544332211
Q ss_pred HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccC
Q 015657 88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 164 (403)
Q Consensus 88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~ 164 (403)
...+-.|.-+||||.-.--..++. .+...|..+||+.|..| |.-..++-.-.-.++..-+++||+
T Consensus 71 ------et~~rhyahVDcPGHaDYvKNMIt------gAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~ 138 (394)
T COG0050 71 ------ETANRHYAHVDCPGHADYVKNMIT------GAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKV 138 (394)
T ss_pred ------ecCCceEEeccCCChHHHHHHHhh------hHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecc
Confidence 124567899999996532222322 22334888999988544 333333333333455556899999
Q ss_pred CCCCchhHH-------HHHHHHhCCC
Q 015657 165 DGDSRGGAA-------LSVKEVSGKP 183 (403)
Q Consensus 165 D~~~~~~~~-------~~~~~~~g~p 183 (403)
|.-.....+ .++...++.|
T Consensus 139 Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 139 DMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 976544332 2344555554
No 330
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.48 E-value=0.006 Score=63.21 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV 53 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~ 53 (403)
..++++|++|+|||+++..++..+.++ +.+|..+.++-
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 458899999999999999999999876 78898888763
No 331
>PF13245 AAA_19: Part of AAA domain
Probab=97.47 E-value=0.00021 Score=55.51 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----CCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G~kVllVd~D 52 (403)
+..+++|.|++|+||||++.+++.++... +.+|+++...
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 35667889999999998888888888765 8899988743
No 332
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.025 Score=60.69 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~ 91 (403)
.-+..++|+|++|+||||++..||.++--.......-.|. ..+....+......+++..+. .....+.+++.++
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~-----~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~ 110 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG-----TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE 110 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc-----cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHH
Confidence 3456789999999999999999998885211100000110 011111222233333433222 2223444555444
Q ss_pred HHH----hCCCcEEEEeCCCCcc
Q 015657 92 EAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 92 ~~~----~~~~D~VIIDtpg~l~ 110 (403)
.+. ..++.+||||-+-.+.
T Consensus 111 ~~~~~p~~~~~kVvIIDEa~~L~ 133 (585)
T PRK14950 111 RVQFRPALARYKVYIIDEVHMLS 133 (585)
T ss_pred HHhhCcccCCeEEEEEeChHhCC
Confidence 432 2457899999876664
No 333
>PRK09165 replicative DNA helicase; Provisional
Probab=97.46 E-value=0.0018 Score=67.97 Aligned_cols=145 Identities=22% Similarity=0.271 Sum_probs=78.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC---------------CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT 78 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~---------------G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~ 78 (403)
+..+++|.|.+|+||||++.++|...+.. |.+|+++.+..........+ ++...+++......
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~--la~~s~v~~~~i~~ 293 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI--LSEQSEISSSKIRR 293 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhc
Confidence 34788899999999999999999988753 78999999885544433332 22333444322111
Q ss_pred -CCCH--HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c-------H---H-
Q 015657 79 -EVKP--SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T-------G---Q- 141 (403)
Q Consensus 79 -~~~~--~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~-------g---~- 141 (403)
.... ...+.++...+ ....+.|-|+|+ +..+ .+...+..+..... .-++|||.. . . +
T Consensus 294 ~~l~~~e~~~l~~a~~~l--~~~~l~I~d~~~-~ti~-~i~~~ir~l~~~~~--~~lvvIDyLqli~~~~~~~~~~r~~e 367 (497)
T PRK09165 294 GKISEEDFEKLVDASQEL--QKLPLYIDDTPA-LSIS-QLRARARRLKRQHG--LDLLVVDYLQLIRGSSKRSSDNRVQE 367 (497)
T ss_pred CCCCHHHHHHHHHHHHHH--hcCCeEEeCCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEcchHhccCCCCCCCCchHHH
Confidence 1222 22334444444 245566656554 3321 22222222222211 226666651 0 0 1
Q ss_pred --HHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 142 --EAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 142 --~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.+.+.++.+....++..+++..+..
T Consensus 368 v~~is~~LK~lAkel~ipVi~lsQLnR 394 (497)
T PRK09165 368 ISEITQGLKALAKELNIPVIALSQLSR 394 (497)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeecccc
Confidence 1223345566777888788877764
No 334
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.46 E-value=0.00087 Score=59.84 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-h---cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-I---EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-~---~~~i~GvIlNk~D~~~ 168 (403)
++..+.++|+||....... .... .-.++.+++|+|+......... ...+. . .-....+|+||+|...
T Consensus 57 ~~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSS----WNTY--YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCeEEEEEECCCCHHHHHH----HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 3568999999997432111 1111 1245889999999655333222 22221 1 1123458999999653
No 335
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.46 E-value=0.00081 Score=59.08 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHH---hhhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTT---FNIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~---~~~~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||..... ...... .-..+.+++|+|......... .... +...-.+.-+|.||+|..
T Consensus 51 ~~~l~i~D~~G~~~~~----~~~~~~--~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 51 RVKLQIWDTAGQERFR----TITQSY--YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEEECCChHHHH----HHHHHH--hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3688999999963211 111111 123588899999966533322 1221 111112244889999964
No 336
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.46 E-value=0.0013 Score=68.52 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..|+++|.+++||||+...|. +....++.. . |.... ..... .+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~--~-~gtT~------d~~~~-~~------------------- 254 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD--V-AGTTV------DPVDS-LI------------------- 254 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC--C-CCccC------CcceE-EE-------------------
Confidence 35668899999999999998886 333222221 0 11100 00000 01
Q ss_pred HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
...+..+.|+||||.... .......+......-.++.+++|+|+..+ ......+......-...-+|+||+|.
T Consensus 255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 013567889999995311 12222222222223356889999998543 22223333333222345589999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 335 ~~ 336 (472)
T PRK03003 335 VD 336 (472)
T ss_pred CC
Confidence 53
No 337
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.45 E-value=0.043 Score=54.80 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=53.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC----C--CcEEEEeccCCChhhHHHHHHhhhcc---CCceEeCCCCCCH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ----G--KSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGTEVKP 82 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G--~kVllVd~D~~rp~~~~~l~~~~~~~---gv~v~~~~~~~~~ 82 (403)
+..+..++|+|++|+|||+++..++..+... + ..+..++|....... .-+..+.... +..+-. .....
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~~~~~--~~~~~ 113 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY-QVLVELANQLRGSGEEVPT--TGLST 113 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH-HHHHHHHHHHhhcCCCCCC--CCCCH
Confidence 3456678999999999999999999988642 2 356667775443211 1111111211 222111 11122
Q ss_pred HHHHHHHHHHHH-hCCCcEEEEeCCCCc
Q 015657 83 SQIAKQGLEEAK-KKNVDVVIVDTAGRL 109 (403)
Q Consensus 83 ~~~~~~~l~~~~-~~~~D~VIIDtpg~l 109 (403)
.+........+. ....-++|||=.-.+
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 334444444443 234567899987776
No 338
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.45 E-value=0.0012 Score=64.30 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=29.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+++|+++|++||||||+|..|+..+. ....++.|..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 57899999999999999999887662 4567888844
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.45 E-value=0.0014 Score=59.00 Aligned_cols=89 Identities=25% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCC--------CCHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTE--------VKPS 83 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~--------~~~~ 83 (403)
+..+.+++| .|.||||.|..+|...+.+|++|+++..--.. .+-..-+.. .++.+...+.. ....
T Consensus 5 ~Gli~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~----~~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP----HGVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh----cCcEEEECCCCCeecCCCcHHHH
Confidence 345555545 99999999999999999999999877543221 111112211 14444333221 1112
Q ss_pred HHHHHHHHHH----HhCCCcEEEEeCCC
Q 015657 84 QIAKQGLEEA----KKKNVDVVIVDTAG 107 (403)
Q Consensus 84 ~~~~~~l~~~----~~~~~D~VIIDtpg 107 (403)
..++++++.+ ....||+||+|--.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 2344444443 34789999999754
No 340
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.44 E-value=0.00078 Score=58.61 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~~ 169 (403)
++++.|+|+||....... . ... ....+.+++|+|+......... ...+.. .-.+.-+|.||+|....
T Consensus 42 ~~~~~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPL-W---KHY--YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred CEEEEEEECCCChhhHHH-H---HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 578999999997543111 1 111 1234888999999765333222 222111 12234478899997643
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.44 E-value=0.0086 Score=61.93 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D 52 (403)
.-++++|++|+|||+++.+++..+.+. +.+|++++++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 458999999999999999999998765 6789988876
No 342
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.44 E-value=0.005 Score=58.15 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..++++|++|+|||+++..++..+...|++|.++.+|
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 5689999999999999999999998889999988876
No 343
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.43 E-value=0.0017 Score=56.67 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+||||||+...+.
T Consensus 3 i~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999998776
No 344
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.43 E-value=0.00077 Score=73.82 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. +.+..+++ + +.+...+.. .. .+ .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~-~-~~gtT~d~~-------~~-~~-------------------~ 494 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVN-D-LAGTTRDPV-------DE-IV-------------------E 494 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccC-C-CCCCCcCcc-------ee-EE-------------------E
Confidence 3467889999999999998887 33332222 1 111110000 00 01 0
Q ss_pred hCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
..+.++.|+||||.... .......+......-.++.+++|+|+..+ ......+......-...-+|+||+|..
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 14567889999995421 11222222222223346889999999544 222233333322223455899999975
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 575 ~ 575 (712)
T PRK09518 575 D 575 (712)
T ss_pred C
Confidence 3
No 345
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.42 E-value=0.0014 Score=68.65 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCC-----------ceEeCC----
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGV-----------PVYTAG---- 77 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv-----------~v~~~~---- 77 (403)
+.++++|+|.+|+||||++..++..-+++ |.++++|.++-. +. ++.......|. .++...
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~---~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQ---DIIKNARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HH---HHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence 46899999999999999999998876665 999999999832 22 22222222222 111111
Q ss_pred -----CCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657 78 -----TEVKPSQIAKQGLEEAKKKNVDVVIVDTA 106 (403)
Q Consensus 78 -----~~~~~~~~~~~~l~~~~~~~~D~VIIDtp 106 (403)
........+......+.....+.|+||..
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 11233445555556665567899999953
No 346
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.42 E-value=0.001 Score=70.09 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
..+++|.|.+|+|||+++..++...++.|.+|++++.+-
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 578899999999999999999999999999999999874
No 347
>PRK05595 replicative DNA helicase; Provisional
Probab=97.42 E-value=0.0027 Score=65.68 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=78.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~ 89 (403)
+..++++.|.+|+||||++.++|..++ ++|++|+++.++.........+ ++...+++...... .... ...+.++
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~--~a~~~~v~~~~~~~~~l~~~e~~~~~~~ 277 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKL--LCSEANVDMLRLRTGNLEDKDWENIARA 277 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 346788889999999999999999876 5699999999885433322221 23333444322211 1111 2234444
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---cc--H------H---HHHHHHHHhhhcCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--G------Q---EAAALVTTFNIEIG 155 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~--g------~---~~~~~~~~~~~~~~ 155 (403)
...+. ...+.|-|+++ +..+ .+...+..+..... .-++|||. .. . + .+.+.++.+....+
T Consensus 278 ~~~l~--~~~l~i~d~~~-~t~~-~i~~~~r~~~~~~~--~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~ 351 (444)
T PRK05595 278 SGPLA--AAKIFIDDTAG-VSVM-EMRSKCRRLKIEHG--IDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEME 351 (444)
T ss_pred HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 44442 34455555555 3322 22233333322222 22666665 11 0 1 12233455666778
Q ss_pred eeEEEEccCCC
Q 015657 156 ITGAILTKLDG 166 (403)
Q Consensus 156 i~GvIlNk~D~ 166 (403)
+..+++..+..
T Consensus 352 i~vi~lsQLnR 362 (444)
T PRK05595 352 CPVIALSQLSR 362 (444)
T ss_pred CeEEEeeccCc
Confidence 87788877764
No 348
>PRK11058 GTPase HflX; Provisional
Probab=97.42 E-value=0.0014 Score=67.46 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=61.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+++||||+...|. |.++. +. |... ...+.. ...+.. ..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~-~~~~-tTld~~--------~~~i~l------------------~~ 243 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRIT------EARVY-AA-DQLF-ATLDPT--------LRRIDV------------------AD 243 (426)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcee-ec-cCCC-CCcCCc--------eEEEEe------------------CC
Confidence 47899999999999998886 44554 21 1100 000000 000100 12
Q ss_pred CCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH--HHH----HHHHHhhhcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ--EAA----ALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~--~~~----~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
...++|+||||.... ...+...... +.....++.+++|+|+.... +.. ..+..+...-...-+|+||+|...
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 236899999998532 2232222222 22234568899999995432 211 222222221123448999999753
No 349
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.41 E-value=0.0062 Score=62.18 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D 52 (403)
..+++.|++|+|||+++.+++..+.++ +.+|+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 468899999999999999999999876 7889888866
No 350
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.034 Score=60.18 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-hhHHHHHHhhhccCCceEeCC-CCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-AAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~~~~~l 90 (403)
.-+..++|+|+.|+||||++..||+.|--.... ..++... .....+ ..+. -++++..+ ......+.+++.+
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~----~~~pCg~C~sCr~i-~~g~--~~DvlEidaAs~~gVd~IRell 108 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ----HGEPCGVCQSCTQI-DAGR--YVDLLEIDAASNTGIDNIREVL 108 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC----CCCCCcccHHHHHH-hccC--ccceEEEeccccCCHHHHHHHH
Confidence 346788999999999999999999887533211 1111110 011111 1111 12222221 1223445555555
Q ss_pred HHHH----hCCCcEEEEeCCCCcc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~ 110 (403)
+.+. ..+|.++|||-+..+.
T Consensus 109 e~a~~~P~~gk~KVIIIDEad~Ls 132 (709)
T PRK08691 109 ENAQYAPTAGKYKVYIIDEVHMLS 132 (709)
T ss_pred HHHHhhhhhCCcEEEEEECccccC
Confidence 5432 2468899999987664
No 351
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.0014 Score=64.83 Aligned_cols=131 Identities=27% Similarity=0.400 Sum_probs=75.6
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc-CCChhhH----HHHHHhhhc--------------cCC----c
Q 015657 17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAAI----DQLVILGEQ--------------VGV----P 72 (403)
Q Consensus 17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D-~~rp~~~----~~l~~~~~~--------------~gv----~ 72 (403)
+|.++|. .|+|||+++..+++.|+.+|++|++|--- +++-.-+ +.+....+. ..+ .
T Consensus 128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg~~ 207 (449)
T COG2403 128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTGGG 207 (449)
T ss_pred eEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccccccc
Confidence 4677777 99999999999999999999999877542 2321111 111111100 011 1
Q ss_pred eEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhh
Q 015657 73 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFN 151 (403)
Q Consensus 73 v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~ 151 (403)
++. ..+-..+++++. +..|+|+.|+.+.-. -.+.||..++|+|+. .+++.....-.++
T Consensus 208 vlA---Gvdy~~vlke~~-----~~aD~IlwdGgnndf-------------Pfvkpd~~Ivvvda~rpg~ei~~~pGe~~ 266 (449)
T COG2403 208 VLA---GVDYGTVLKEGE-----KEADFILWDGGNNDF-------------PFVKPDLHIVVVDALRPGEEIGSFPGELR 266 (449)
T ss_pred eEe---eeeHHHHHHHHh-----hhccEEEEeCCCCCC-------------CcccCCeeEEEecCCCCchhhccCCCcee
Confidence 111 112223334333 345999999988532 123468889999994 3555443322221
Q ss_pred hcCCe-eEEEEccCCCCCch
Q 015657 152 IEIGI-TGAILTKLDGDSRG 170 (403)
Q Consensus 152 ~~~~i-~GvIlNk~D~~~~~ 170 (403)
+.. ..+|+||+|....+
T Consensus 267 --irlAD~VIItkveea~~~ 284 (449)
T COG2403 267 --IRLADLVIITKVEEAMAE 284 (449)
T ss_pred --eeeccEEEEecccccchH
Confidence 222 34899999976544
No 352
>PRK05439 pantothenate kinase; Provisional
Probab=97.41 E-value=0.00028 Score=69.35 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r 55 (403)
.+.|.+|.|+|.+||||||+|..|+..|.+ .|.+|.+|..|-|-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 457899999999999999999999998876 37899999999653
No 353
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.40 E-value=0.00019 Score=65.71 Aligned_cols=39 Identities=36% Similarity=0.552 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCc----EEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~k----VllVd~D~~r 55 (403)
||.|+|.+||||||+|..|+..|.+.|.. +.++..|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999998877 6777777554
No 354
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.40 E-value=0.00041 Score=64.49 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|++.|..||||||+...|. |..+.-.... +. ... ........ ...
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~---~~---~~t-----~~~~~~~~-----------------~~~ 47 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSS---AK---SVT-----QECQKYSG-----------------EVD 47 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS-SS--TT---TS---S-------SS-EEEEE-----------------EET
T ss_pred EEEEECCCCCCHHHHHHHHh------cccceeeccc---cC---Ccc-----cccceeee-----------------eec
Confidence 37889999999999998886 6555211100 00 000 00111110 025
Q ss_pred CCcEEEEeCCCCccc---cHHhHHHHHHHhhh--cCCceEEEEEecc--cH--HHHHHHH-HHhhhc-CCeeEEEEccCC
Q 015657 97 NVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAM--TG--QEAAALV-TTFNIE-IGITGAILTKLD 165 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~---d~~l~~el~~i~~~--~~~~~vllVvda~--~g--~~~~~~~-~~~~~~-~~i~GvIlNk~D 165 (403)
+..+.||||||.... +.....++...... ..|+.+++|++.. +. ..+...+ ..|.+. .+-.-||+|..|
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 688999999997653 33445555443322 3467889998873 22 2233322 345433 334557888887
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
.-
T Consensus 128 ~~ 129 (212)
T PF04548_consen 128 EL 129 (212)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.40 E-value=0.00047 Score=62.49 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=49.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
..-+++.|++|+|||.+|.+++..+..+|++|.++..+ ...+.+.. . ...+ . ..+.+..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~---~-----~~~~---~----~~~~~~~l- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQ---S-----RSDG---S----YEELLKRL- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHC---C-----HCCT---T----HCHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceeccccc---c-----cccc---c----hhhhcCcc-
Confidence 45689999999999999999999999999999998854 33333321 1 0000 0 12334555
Q ss_pred hCCCcEEEEeCCCCcccc
Q 015657 95 KKNVDVVIVDTAGRLQID 112 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d 112 (403)
.++|++|||=-|....+
T Consensus 107 -~~~dlLilDDlG~~~~~ 123 (178)
T PF01695_consen 107 -KRVDLLILDDLGYEPLS 123 (178)
T ss_dssp -HTSSCEEEETCTSS---
T ss_pred -ccccEecccccceeeec
Confidence 47899999998876543
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00066 Score=67.45 Aligned_cols=88 Identities=26% Similarity=0.346 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..+++.|++|+|||+++.++|..+..+|++|+++.++ ...+.+.... +.. .. .....+..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~----~l~~~l~~~~-------~~~--~~----~~~~~~~~l-- 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD----ELIEILREIR-------FNN--DK----ELEEVYDLL-- 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH----HHHHHHHHHH-------hcc--ch----hHHHHHHHh--
Confidence 5689999999999999999999999999999988864 2233332100 000 00 011114444
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDV 122 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i 122 (403)
..+|++|||--|...........+-.+
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~i 271 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNL 271 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHH
Confidence 578999999988765544333333333
No 357
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.39 E-value=0.0021 Score=63.89 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
.-|+++|.++|||||+...|.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt 178 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVS 178 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHh
Confidence 457899999999999998886
No 358
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.095 Score=54.92 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.-+..++++|+.|+||||+|..+|..+-
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999998775
No 359
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.038 Score=58.10 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCc---EEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS---CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~k---VllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~ 88 (403)
.-+..++++|++|+||||+|..+|..+--.... ..+..|... ............+++..+. .....+.+++
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C-----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~ 115 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC-----TNCISFNNHNHPDIIEIDAASKTSVDDIRR 115 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-----hHHHHHhcCCCCcEEEeeccCCCCHHHHHH
Confidence 345778999999999999999999887532110 000111100 0111111222233333222 2233455555
Q ss_pred HHHHHH----hCCCcEEEEeCCCCcc
Q 015657 89 GLEEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 89 ~l~~~~----~~~~D~VIIDtpg~l~ 110 (403)
.++.+. ..+|.++|||-+..+.
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~Ls 141 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHMLS 141 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhhcC
Confidence 555553 2467899999887664
No 360
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.38 E-value=0.0018 Score=64.97 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+++||||+...|. |..+ ++ .|...+ +.+. . ...+.. .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~------~~~~-~v-~~~~~t-T~d~------~--~~~i~~------------------~ 234 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALT------GADV-YA-ADQLFA-TLDP------T--TRRLDL------------------P 234 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCce-ee-ccCCcc-ccCC------E--EEEEEe------------------C
Confidence 458889999999999998877 4443 22 121110 0000 0 000100 1
Q ss_pred CCCcEEEEeCCCCccc-cHHhHHHHHHH-hhhcCCceEEEEEecccHH---HH---HHHHHHhhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQI-DKAMMDELKDV-KRVLNPTEVLLVVDAMTGQ---EA---AALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~-d~~l~~el~~i-~~~~~~~~vllVvda~~g~---~~---~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+..+.|+||||.+.. ...+....... .....+|-+++|+|+.... .. ......+...-...-+|+||+|..
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 3468999999997432 22222222221 1233568899999985432 11 122222221112345899999975
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 315 ~ 315 (351)
T TIGR03156 315 D 315 (351)
T ss_pred C
Confidence 3
No 361
>PRK06761 hypothetical protein; Provisional
Probab=97.38 E-value=0.0045 Score=60.12 Aligned_cols=42 Identities=31% Similarity=0.618 Sum_probs=35.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE-EeccCCCh
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRP 56 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll-Vd~D~~rp 56 (403)
.++|+|+|++||||||++..|+..|...|.+|.+ .+.|..+|
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p 45 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHP 45 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCc
Confidence 4689999999999999999999999888988865 55665443
No 362
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.0019 Score=62.37 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=54.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...++++|++|+|||.++..++..+.++|++|.++.+. ...+.+... . . ... ..+.+..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a-~-------~---~~~----~~~~l~~l- 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVA-R-------R---ELQ----LESAIAKL- 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHH-H-------h---CCc----HHHHHHHH-
Confidence 35589999999999999999999999999999887753 333333211 0 0 001 12234444
Q ss_pred hCCCcEEEEeCCCCccccHH
Q 015657 95 KKNVDVVIVDTAGRLQIDKA 114 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~ 114 (403)
..+|++|||=.|....+..
T Consensus 166 -~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred -hcCCEEEEeccccccCCHH
Confidence 5799999998887765443
No 363
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.029 Score=60.27 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~~~~~~l 90 (403)
.-+..++++|+.|+||||+|..||+.+--. +. +..+... ............++++..+.. ....+.+++.+
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~-----~~~pCg~--C~sC~~I~~g~hpDviEIDAAs~~~VddIReli 107 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGV-----TSTPCEV--CATCKAVNEGRFIDLIEIDAASRTKVEDTRELL 107 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC-----CCCCCcc--CHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 346788999999999999999999887522 11 1111110 001111122223344433221 22344455555
Q ss_pred HHHH----hCCCcEEEEeCCCCcc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~ 110 (403)
..+. ..+|.++|||-+-.+.
T Consensus 108 ~~~~y~P~~gk~KV~IIDEVh~LS 131 (702)
T PRK14960 108 DNVPYAPTQGRFKVYLIDEVHMLS 131 (702)
T ss_pred HHHhhhhhcCCcEEEEEechHhcC
Confidence 4432 2468899999888775
No 364
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0074 Score=64.34 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D 52 (403)
..++|+|..|+|||.++.+++.++.+ .|++|.++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 34889999999999999999999876 48999999876
No 365
>PRK08506 replicative DNA helicase; Provisional
Probab=97.37 E-value=0.003 Score=65.93 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPS--QIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~--~~~~~~l 90 (403)
+..++++.|.+|+|||+++.++|...++.|++|+++.++.........+ ++...+++..... ...... ..+.+++
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRM--LSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3468888999999999999999999988899999999985543333322 2223344332111 112222 2345555
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c--H------H---HHHHHHHHhhhcCCe
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T--G------Q---EAAALVTTFNIEIGI 156 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~--g------~---~~~~~~~~~~~~~~i 156 (403)
..+. +..+.|.|+++ +..+ .+...+..+.... +.--++|||.. . + + .+.+.++.+...+++
T Consensus 269 ~~l~--~~~l~I~d~~~-~ti~-~I~~~~r~l~~~~-~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~i 343 (472)
T PRK08506 269 DELS--KKKLFVYDSGY-VNIH-QVRAQLRKLKSQH-PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDI 343 (472)
T ss_pred HHHH--cCCeEEECCCC-CCHH-HHHHHHHHHHHhC-CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5553 44567777654 3321 2222222222211 12236777761 1 0 1 222334556667777
Q ss_pred eEEEEccCCC
Q 015657 157 TGAILTKLDG 166 (403)
Q Consensus 157 ~GvIlNk~D~ 166 (403)
..+++..+..
T Consensus 344 pVi~lsQLnR 353 (472)
T PRK08506 344 PIIALSQLNR 353 (472)
T ss_pred cEEEEeecCc
Confidence 7788877654
No 366
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.36 E-value=0.0019 Score=67.90 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhh-------ccCCceEeCCC-------
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGE-------QVGVPVYTAGT------- 78 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~-------~~gv~v~~~~~------- 78 (403)
+..+++++|.+|+||||++..+++..+++ |.+|++|.++-......+++..++- ...+.++....
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~ 109 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEE 109 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccccc
Confidence 45889999999999999999999887777 9999999998544333333322210 00111111110
Q ss_pred --CCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 015657 79 --EVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 108 (403)
Q Consensus 79 --~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~ 108 (403)
..+....+......+...+++.++||+-..
T Consensus 110 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 110 AGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 112233344444444456789999998653
No 367
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.029 Score=56.44 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG 43 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G 43 (403)
..+..++++|++|+||||++..++..+...+
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4467899999999999999999998876543
No 368
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.36 E-value=0.0018 Score=56.95 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~~~~i~GvIlNk~D~~ 167 (403)
..+++.|+||||.-.... +. ... .-..+.+++|+|........ .....+. ... ..-+|.||+|..
T Consensus 47 ~~~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-p~ivv~nK~Dl~ 117 (161)
T cd04124 47 KTILVDFWDTAGQERFQT-MH---ASY--YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEI-PCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEEeCCCchhhhh-hh---HHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC-cEEEEEECccCc
Confidence 457888999999643211 11 111 12458889999986543322 2222222 123 344899999964
No 369
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.36 E-value=0.00053 Score=70.50 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
++...|+++|..++||||++..|...+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~ 31 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKC 31 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHh
Confidence 345668999999999999999988644
No 370
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.36 E-value=0.0019 Score=69.04 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
++.+.||||||.-. ....+ +......|.+++|+|+..+ +.. ..+.... ..++..-|++||+|...
T Consensus 49 ~~~v~~iDtPGhe~----f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~-ehl~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 49 DYRLGFIDVPGHEK----FISNA--IAGGGGIDAALLVVDADEGVMTQTG-EHLAVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred CEEEEEEECCCHHH----HHHHH--HhhhccCCEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEECCCCCC
Confidence 47889999999532 22211 2223346899999999653 322 2222111 22332458999999754
No 371
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.35 E-value=0.0018 Score=56.30 Aligned_cols=37 Identities=38% Similarity=0.659 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
+++++|++||||||++..|+..+ ...+++.|..+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~ 37 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPA 37 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHH
Confidence 47899999999999998888764 34578999877653
No 372
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.35 E-value=0.0011 Score=70.95 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh--
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG-- 171 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~-- 171 (403)
+++.+.++||||..........+ + ......-.+|-+++|+|+...+..........+.-...-+++||+|...+.+
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIR 118 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh
Confidence 35678999999986542211111 1 1122223568899999997654443333333222233458999999643222
Q ss_pred -HHHHHHHHhCCCeEEee
Q 015657 172 -AALSVKEVSGKPIKLVG 188 (403)
Q Consensus 172 -~~~~~~~~~g~pi~fig 188 (403)
....+.+..|.|+..+.
T Consensus 119 ~d~~~L~~~lg~pvv~tS 136 (591)
T TIGR00437 119 IDEEKLEERLGVPVVPTS 136 (591)
T ss_pred hhHHHHHHHcCCCEEEEE
Confidence 23556677888875443
No 373
>PRK04213 GTP-binding protein; Provisional
Probab=97.35 E-value=0.0044 Score=56.42 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
..|+++|.+|+||||+...|.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~ 30 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT 30 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999998775
No 374
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.35 E-value=0.0013 Score=58.42 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh--cC--CeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI--EI--GITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~--~~--~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||....... . ... ....+.+++|+|....+..... ...+.. .. .+.-++.||.|...
T Consensus 41 ~~~~i~l~Dt~G~~~~~~~-~---~~~--~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRPL-W---KHY--YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CCEEEEEEECCCChhcchH-H---HHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 4678999999997532111 1 111 1235889999998654333222 222211 11 23458899999753
No 375
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.35 E-value=0.0017 Score=59.73 Aligned_cols=115 Identities=26% Similarity=0.282 Sum_probs=59.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.+++++.|.+|+||||+...+...+...|++|+++..- ..++ . .+....++++.+............. -...
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT--~~Aa-~---~L~~~~~~~a~Ti~~~l~~~~~~~~-~~~~ 89 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT--NKAA-K---ELREKTGIEAQTIHSFLYRIPNGDD-EGRP 89 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS--HHHH-H---HHHHHHTS-EEEHHHHTTEECCEEC-CSSC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc--HHHH-H---HHHHhhCcchhhHHHHHhcCCcccc-cccc
Confidence 346788999999999999999999999999999887733 2222 2 2333334433322100000000000 0000
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
....++++|||=++.+. ...+..+....... ...+++|-|..
T Consensus 90 ~~~~~~vliVDEasmv~--~~~~~~ll~~~~~~-~~klilvGD~~ 131 (196)
T PF13604_consen 90 ELPKKDVLIVDEASMVD--SRQLARLLRLAKKS-GAKLILVGDPN 131 (196)
T ss_dssp C-TSTSEEEESSGGG-B--HHHHHHHHHHS-T--T-EEEEEE-TT
T ss_pred cCCcccEEEEecccccC--HHHHHHHHHHHHhc-CCEEEEECCcc
Confidence 01467999999998764 23333333222221 14578887863
No 376
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.34 E-value=0.0022 Score=55.89 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||...... ..... ...++.+++|+|............ .+...-...-+|.||+|....
T Consensus 48 ~~~l~l~D~~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 48 RVKLQIWDTAGQERFRS----VTRSY--YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred EEEEEEEECcchHHHHH----hHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 46889999999643211 11111 224588999999976544333221 111111234578899996432
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (161)
T cd04113 122 EVTFLEASRFAQENGLLF 139 (161)
T ss_pred cCCHHHHHHHHHHcCCEE
Confidence 123344445555544
No 377
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.34 E-value=0.0022 Score=56.52 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=14.9
Q ss_pred EEcCCCCcHHHHHHHHH
Q 015657 20 LAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 20 v~G~gGsGKTTla~~LA 36 (403)
+.|.+||||||+...|.
T Consensus 1 iiG~~~~GKStll~~l~ 17 (176)
T cd01881 1 LVGLPNVGKSTLLNALT 17 (176)
T ss_pred CCCCCCCcHHHHHHHHh
Confidence 46999999999997776
No 378
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.34 E-value=0.0013 Score=59.18 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
..|+++|++||||||+...|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 345999999999999997765
No 379
>PRK09183 transposase/IS protein; Provisional
Probab=97.34 E-value=0.002 Score=61.82 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=51.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...++++|++|+|||+++..|+..+..+|++|.++.+. .....+... ...+ . +...+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~----~l~~~l~~a-~~~~----------~----~~~~~~~~- 161 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA----DLLLQLSTA-QRQG----------R----YKTTLQRG- 161 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH----HHHHHHHHH-HHCC----------c----HHHHHHHH-
Confidence 34578999999999999999998888899999887643 222222111 0000 0 11122221
Q ss_pred hCCCcEEEEeCCCCccccHH
Q 015657 95 KKNVDVVIVDTAGRLQIDKA 114 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~ 114 (403)
...+|++|||--+....+..
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred hcCCCEEEEcccccCCCChH
Confidence 14789999999987665443
No 380
>PRK01184 hypothetical protein; Provisional
Probab=97.33 E-value=0.0028 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSC 46 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV 46 (403)
.+|+++|++||||||++. + +++.|+.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~---~~~~g~~~ 28 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-I---AREMGIPV 28 (184)
T ss_pred cEEEEECCCCCCHHHHHH-H---HHHcCCcE
Confidence 589999999999999763 3 45557666
No 381
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.33 E-value=0.0022 Score=58.78 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
-|+++|.+|+||||+...|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998887
No 382
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.037 Score=58.68 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK 41 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~ 41 (403)
..+..++++|+.|+||||+|..||.+|.-
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567889999999999999999988863
No 383
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.33 E-value=0.002 Score=58.90 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
.-|+++|.+||||||++..+.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 448899999999999997775
No 384
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.079 Score=56.97 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE-EEEeccCCCh-hhHHHHHHhhhccCCceEeCCC-CCCHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRP-AAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQ 88 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV-llVd~D~~rp-~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~ 88 (403)
++-+..++|+|+.|+||||++..||..|--.+... .-++.++... .....+ ....-.+++..+. ....++.+++
T Consensus 35 gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I---~aG~hpDviEIdAas~~gVDdIRe 111 (700)
T PRK12323 35 QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI---DAGRFVDYIEMDAASNRGVDEMAQ 111 (700)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH---HcCCCCcceEecccccCCHHHHHH
Confidence 34467789999999999999999998885321100 0001111100 011111 1111123333222 1223445555
Q ss_pred HHHHHH----hCCCcEEEEeCCCCcc
Q 015657 89 GLEEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 89 ~l~~~~----~~~~D~VIIDtpg~l~ 110 (403)
.++.+. ..+|.++|||-.-.++
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHhcC
Confidence 555432 3568899999988775
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.33 E-value=0.00035 Score=53.07 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
+|+++|.+||||||++..|+..| .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47889999999999999999999 5677777764
No 386
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.32 E-value=0.00097 Score=73.26 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=60.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++.+|++.|..++||||+...|. +.+|. +.. + +. .....+ .+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~e-~-~G-------IT~~ig--a~~v---------------- 332 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AGE-A-GG-------ITQHIG--AYQV---------------- 332 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--ccc-c-Cc-------eeeecc--EEEE----------------
Confidence 456678999999999999997773 22221 111 0 00 000111 1111
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
.+.++.+.|+||||...+.. +.. ......|.++||+|+..+ ......+... ...++ .-|++||+|..
T Consensus 333 -~~~~~~ItfiDTPGhe~F~~-m~~-----rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~ 402 (787)
T PRK05306 333 -ETNGGKITFLDTPGHEAFTA-MRA-----RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKP 402 (787)
T ss_pred -EECCEEEEEEECCCCccchh-HHH-----hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECcccc
Confidence 12457899999999754321 111 112234788999998543 2222222221 22334 44899999974
No 387
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.32 E-value=0.0014 Score=59.16 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=43.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-hh---cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-NI---EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~~---~~~i~GvIlNk~D~~~ 168 (403)
+++.+.|.|+||...... + .... ...++.+++|+|+......... +..+ .. .-.+.-+|.||+|...
T Consensus 59 ~~~~~~i~D~~Gq~~~~~-~---~~~~--~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRP-L---WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CCEEEEEEECCCCHHHHH-H---HHHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 467899999999632211 1 0111 2245889999999654333222 2222 11 1123558899999654
Q ss_pred chhHHHHHHHHhCC
Q 015657 169 RGGAALSVKEVSGK 182 (403)
Q Consensus 169 ~~~~~~~~~~~~g~ 182 (403)
... ...+.+.++.
T Consensus 133 ~~~-~~~~~~~l~l 145 (181)
T PLN00223 133 AMN-AAEITDKLGL 145 (181)
T ss_pred CCC-HHHHHHHhCc
Confidence 332 3444555554
No 388
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.32 E-value=0.0021 Score=55.93 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=43.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCC-eeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIG-ITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~-i~GvIlNk~D~~~~ 169 (403)
.+++.|+||||..... ....... -.++.+++|+|............ .+..... ..-+|.||.|....
T Consensus 48 ~~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQERFR----TLTSSYY--RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchhhh----hhhHHHh--CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 4789999999963221 1111111 23588899999865543322221 2211112 23488899997522
Q ss_pred h---hHHHHHHHHhCCCeE
Q 015657 170 G---GAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ~---~~~~~~~~~~g~pi~ 185 (403)
. ..........+.|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 122 EVTREEGLKFARKHNMLFI 140 (161)
T ss_pred ccCHHHHHHHHHHcCCEEE
Confidence 2 233344445566653
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.32 E-value=0.0011 Score=65.40 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=55.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE 79 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~ 79 (403)
..+++-++|.+|+|||+++..++...+. .|.+|++||+.- ++|.-+.+. .+..+++ ++....
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~---a~~~g~d~~~~l~~i~~~~~- 170 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI---AERFGVDPDAVLDNILYARA- 170 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH---HHHcCCChHHhcCcEEEecC-
Confidence 3488899999999999999999875542 356999999874 345443332 3333322 111111
Q ss_pred CCH---HHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657 80 VKP---SQIAKQGLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 80 ~~~---~~~~~~~l~~~~~~~~D~VIIDtpg~l 109 (403)
... .+.+......+...++++||||+-..+
T Consensus 171 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 171 YTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 111 122233333344457999999987654
No 390
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.31 E-value=0.0013 Score=57.47 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHh-hh---cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-NI---EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~-~~---~~~i~GvIlNk~D~~ 167 (403)
.+..+.|+||||........ .. ....++.+++|+|+...... ......+ .. .-.+.-+|+||+|..
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYW----RC--YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CCEEEEEEECCCCHHHHHHH----HH--HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 35789999999975322110 11 11245889999998654322 2222211 11 123455899999975
No 391
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.31 E-value=0.0017 Score=56.44 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHh------hhcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF------NIEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~------~~~~~i~GvIlNk~D~ 166 (403)
.++.+.|+||||...... +. ... ...++.+++|+|+....... .....+ ...-...-+|+||+|.
T Consensus 43 ~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRG-LW---EHY--YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred CCEEEEEEECCCCHhhHH-HH---HHH--HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 467889999999753211 11 111 12458899999996543221 112211 1111234589999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 117 ~~ 118 (162)
T cd04157 117 PD 118 (162)
T ss_pred cC
Confidence 53
No 392
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.31 E-value=0.0022 Score=65.76 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=36.6
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+||||... +..++ +......+.+++|+|+..+ ......+.... ......-+|+||+|...
T Consensus 85 ~~i~liDtPG~~~----f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHET----LMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHHH----HHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 6789999999643 22221 2222235889999999632 22222222221 22333457889999754
No 393
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.30 E-value=0.0025 Score=56.10 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||.... ..+. ....-..+.+++|.|.......... ...+.. .....-+|.||+|....
T Consensus 49 ~~~~~l~Dt~g~~~~-----~~~~-~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERY-----RTIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHH-----HHHH-HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 467899999995421 1111 1112245788999998544333222 122211 12234589999996432
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+..+.+..+.|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (165)
T cd01865 123 VVSSERGRQLADQLGFEF 140 (165)
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 133344555566655
No 394
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.30 E-value=0.00093 Score=57.27 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh-----hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN-----IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~-----~~~~i~GvIlNk~D~~~ 168 (403)
...+.++|+||...... ..... ...++.+++|+|+........ ....+. ... ..-+|+||.|...
T Consensus 43 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~ 115 (159)
T cd04159 43 NVTLKVWDLGGQPRFRS----MWERY--CRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGI-PLLVLGNKNDLPG 115 (159)
T ss_pred CEEEEEEECCCCHhHHH----HHHHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCC-CEEEEEeCccccC
Confidence 46789999999643211 11111 123578899999865433222 122211 122 2347899999654
No 395
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.30 E-value=0.007 Score=62.79 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+|+||||+...|. +.++.++..- |... .+++.. .+..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~gtT-----------~d~~~~---------------~i~~ 260 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL------GEERAIVTDI---AGTT-----------RDVIEE---------------HINL 260 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---CCcc-----------cccEEE---------------EEEE
Confidence 347889999999999998887 4333322211 1110 000000 0001
Q ss_pred CCCcEEEEeCCCCccccHHhHHH--H-HHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDE--L-KDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~e--l-~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... .... + ..+...-.+|-+++|+|+.... +....... .... ..-+|+||+|...
T Consensus 261 ~g~~i~l~DT~G~~~~~~-~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~-piiiV~NK~DL~~ 335 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDD-EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-LKDK-PVIVVLNKADLTG 335 (449)
T ss_pred CCeEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-cCCC-CcEEEEEhhhccc
Confidence 457799999999753221 1111 0 1122233468899999985432 11222222 1222 3448999999753
No 396
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.30 E-value=0.0019 Score=56.96 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|.||||...... + ... ..-..+.+++|.|+...+...... ..+.. .-...-+|.||.|....
T Consensus 51 ~~~l~l~D~~g~~~~~~-~---~~~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 51 KIKLQIWDTAGQERFRT-I---TTA--YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEEeCCchHHHHH-H---HHH--HhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 46789999999643211 1 111 122458889999986554433222 11211 11233488899996522
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (167)
T cd01867 125 VVSKEEGEALADEYGIKF 142 (167)
T ss_pred CCCHHHHHHHHHHcCCEE
Confidence 122334444556665
No 397
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.00063 Score=57.14 Aligned_cols=69 Identities=32% Similarity=0.428 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 97 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~ 97 (403)
|++.|++|+||||++..+|..+ +..+.-+++.... .. ........+...+..+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~----------~~----------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI----------SS----------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH----------TS----------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc----------cc----------cccccccccccccccccccc
Confidence 5789999999999999999887 5677777765110 00 12234455666666665444
Q ss_pred -CcEEEEeCCCCc
Q 015657 98 -VDVVIVDTAGRL 109 (403)
Q Consensus 98 -~D~VIIDtpg~l 109 (403)
..+++||-.-.+
T Consensus 58 ~~~vl~iDe~d~l 70 (132)
T PF00004_consen 58 KPCVLFIDEIDKL 70 (132)
T ss_dssp TSEEEEEETGGGT
T ss_pred cceeeeeccchhc
Confidence 688999865443
No 398
>PRK12377 putative replication protein; Provisional
Probab=97.29 E-value=0.002 Score=61.47 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=52.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...++++|++|+|||+++.+++..+.+.|++|.++... .....+...- ... ....+.+..+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~----~l~~~l~~~~--------~~~------~~~~~~l~~l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESY--------DNG------QSGEKFLQEL- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH----HHHHHHHHHH--------hcc------chHHHHHHHh-
Confidence 35689999999999999999999999999999887754 2333332110 000 0112334555
Q ss_pred hCCCcEEEEeCCCCccc
Q 015657 95 KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~ 111 (403)
..+|++|||=-|....
T Consensus 162 -~~~dLLiIDDlg~~~~ 177 (248)
T PRK12377 162 -CKVDLLVLDEIGIQRE 177 (248)
T ss_pred -cCCCEEEEcCCCCCCC
Confidence 5899999998876643
No 399
>PRK05748 replicative DNA helicase; Provisional
Probab=97.29 E-value=0.0052 Score=63.69 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHH--HHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQ--IAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~--~~~~~ 89 (403)
+..+++|.|.+|+||||++.++|...+. .|++|+++.++.........+. +...+++.... .......+ .+..+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l--~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML--CAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 4478899999999999999999999874 5999999998865444333321 22223332211 11122222 34555
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
+..+. +..+.|-|+|+ +..+ .+...+..+.... +..-++|||.
T Consensus 280 ~~~l~--~~~~~i~d~~~-~ti~-~i~~~~r~~~~~~-~~~~~vvIDy 322 (448)
T PRK05748 280 MGSLS--DAPIYIDDTPG-IKVT-EIRARCRRLAQEH-GGLGLILIDY 322 (448)
T ss_pred HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhc-CCCCEEEEcc
Confidence 56553 45566656665 3322 2333333333322 1223677776
No 400
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.027 Score=56.69 Aligned_cols=28 Identities=43% Similarity=0.555 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.-+..++++|++|+||||++..+|..+-
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3467789999999999999999998775
No 401
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.29 E-value=0.0014 Score=64.83 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC-CChhhH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAI 59 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~-~rp~~~ 59 (403)
...++.|+|++|+|||+++..++...+.. +.+|++||++- +++..+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl 153 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERI 153 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHH
Confidence 35888999999999999999999876542 34899999985 344433
No 402
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.29 E-value=0.0014 Score=57.06 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+||||||++..|.
T Consensus 3 i~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999998776
No 403
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.29 E-value=0.0012 Score=56.40 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+||||||+...|.
T Consensus 3 v~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999997775
No 404
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.29 E-value=0.0021 Score=56.11 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc--CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE--IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~--~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||.... ..+.. . ....++.+++|+|.......... ...+... -.+.-+|.||.|...
T Consensus 50 ~~~~l~i~Dt~G~~~~-~~~~~---~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 50 NTVELFIFDSAGQELY-SDMVS---N--YWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred CEEEEEEEECCCHHHH-HHHHH---H--HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 4578999999995322 11111 1 12346888999998655333222 2222211 123458899999743
No 405
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.28 E-value=0.0046 Score=53.45 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+|+||||+...|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6889999999999998887
No 406
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.03 Score=60.42 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK 41 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~ 41 (403)
-+..++|+|+.|+||||++..||..|--
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4566899999999999999999988764
No 407
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.28 E-value=0.001 Score=71.85 Aligned_cols=46 Identities=28% Similarity=0.551 Sum_probs=40.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~ 57 (403)
..+|.+|+++|.+||||||++..|+..|...|..+.+++.|..|..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~ 502 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG 502 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc
Confidence 3468999999999999999999999999888999999999966643
No 408
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.27 E-value=0.0018 Score=58.68 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHH---hhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTT---FNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~---~~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||..... ...... ...++.+++|+|.....+. ...... +...-.+.-+|.||+|....
T Consensus 49 ~~~~~i~Dt~G~~~~~----~~~~~~--~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 49 KVKLQIWDTAGQERFR----SVTHAY--YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEEEEEEeCCCcHHHH----HhhHHH--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 4678999999963211 111111 1235788999998654332 222222 22111234488899997421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+..+....+.|+
T Consensus 123 ~~~~~~~~~l~~~~~~~~ 140 (191)
T cd04112 123 VVKREDGERLAKEYGVPF 140 (191)
T ss_pred ccCHHHHHHHHHHcCCeE
Confidence 123344445556555
No 409
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.27 E-value=0.026 Score=53.34 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=98.3
Q ss_pred EEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHH-----------------------------
Q 015657 17 VILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQL----------------------------- 62 (403)
Q Consensus 17 iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l----------------------------- 62 (403)
.|+++|- +|.||=.+++.|+..|..+|++|..+..|||- |+...+.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l 81 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNL 81 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCC
Confidence 4677765 99999999999999999999999999999873 2221100
Q ss_pred ------------------HHhhhccCCceEeCCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657 63 ------------------VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQI--DKAMMDELKD 121 (403)
Q Consensus 63 ------------------~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~--d~~l~~el~~ 121 (403)
.+.++..|-.+...+- -.+.+++.+..+. ..++|++|++-.|...+ ....++.+.+
T Consensus 82 ~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPH---it~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq 158 (255)
T cd03113 82 SRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPH---ITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQ 158 (255)
T ss_pred cCccCcChHHHHHHHHHHhhccCccCceEEECcC---ccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHH
Confidence 0111111111111110 1122333344432 36899999998887764 3456777777
Q ss_pred HhhhcCCceEEEEE-------ec------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 122 VKRVLNPTEVLLVV-------DA------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 122 i~~~~~~~~vllVv-------da------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
+...+....++++- .+ ...|..+..++.+ .+.+.+||+|--+ .........+...+++|+
T Consensus 159 ~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~--GIqPDgIVcRse~-pL~e~~keKIAlFcnVpv 231 (255)
T cd03113 159 MKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSI--GIQPDILVCRSEK-PLPPEIREKIALFCDVPP 231 (255)
T ss_pred HHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhC--CCCCCEEEEeCCC-CCchHHHHHHHHhcCCCH
Confidence 77777655554332 21 1225555555543 6778899999732 223444555667788887
No 410
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00024 Score=65.17 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..|+++|.|||||||+|.+||..|.+++++|..+..|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4688999999999999999999999999999888776
No 411
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.033 Score=59.56 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+..++|+|+.|+||||++..||..+-- .+... -.|... + ....+.. ......+++..+. .....+.+++..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~pCg~C-~-~C~~i~~-~~~~~~dvieidaas~~gvd~iRel~ 107 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--TPCGVC-E-SCVALAP-NGPGSIDVVELDAASHGGVDDTRELR 107 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--Cccccc-H-HHHHhhc-ccCCCceEEEeccccccCHHHHHHHH
Confidence 45677899999999999999999987752 11110 011100 0 1111110 0011233433322 222345455444
Q ss_pred HHHH----hCCCcEEEEeCCCCccc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~~ 111 (403)
+.+. ..+|.++|||-+..+..
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCcCCH
Confidence 4332 25788999999887753
No 412
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.25 E-value=0.0039 Score=55.11 Aligned_cols=65 Identities=20% Similarity=0.098 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh---cCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI---EIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~---~~~i~GvIlNk~D~~ 167 (403)
...+.|+||||.... ........ -.++.+++|+|+.......... ..... .-...-+|.||+|..
T Consensus 52 ~~~~~i~Dt~G~~~~----~~~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 52 QIKLQIWDTAGQESF----RSITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEEECCCcHHH----HHHHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 357899999995321 11111111 2457899999986543333222 11211 112245888999965
No 413
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.25 E-value=0.0022 Score=56.79 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhh---hcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~---~~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+|+||...... +. .. ..-..+.+++|+|+...... ...+..+. ...+ .-+|.||.|...
T Consensus 42 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~ 113 (164)
T cd04162 42 QDAIMELLEIGGSQNLRK-YW---KR--YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPA 113 (164)
T ss_pred CCeEEEEEECCCCcchhH-HH---HH--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcC
Confidence 467899999999754321 11 11 12235889999998654322 22222221 2222 348999999653
No 414
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.25 E-value=0.001 Score=72.57 Aligned_cols=55 Identities=31% Similarity=0.507 Sum_probs=41.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceE
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~ 74 (403)
..+|.|.||+||||+.+.|.+.|...|++|++.. |...+++.+..--...++.+.
T Consensus 687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts---yThsAVDNILiKL~~~~i~~l 741 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLIKILVALGKKVLLTS---YTHSAVDNILIKLKGFGIYIL 741 (1100)
T ss_pred hheeecCCCCCchhhHHHHHHHHHHcCCeEEEEe---hhhHHHHHHHHHHhccCccee
Confidence 3567899999999999999999999999998776 455566665444444455544
No 415
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.25 E-value=0.0015 Score=58.76 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
+++|+|.+|||||++|.+++.. .|.++++++... +....-+....+.......+.+. ..+.+ +.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~---E~~~~-l~~~l~~~-- 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI---ETPRD-LVSALKEL-- 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe---ecHHH-HHHHHHhc--
Confidence 3688999999999999999865 577888886542 21222122222222222222222 11222 23333333
Q ss_pred CCCcEEEEeCCCCc
Q 015657 96 KNVDVVIVDTAGRL 109 (403)
Q Consensus 96 ~~~D~VIIDtpg~l 109 (403)
...++|+|||-..+
T Consensus 72 ~~~~~VLIDclt~~ 85 (169)
T cd00544 72 DPGDVVLIDCLTLW 85 (169)
T ss_pred CCCCEEEEEcHhHH
Confidence 25789999996654
No 416
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.25 E-value=0.0045 Score=67.82 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=64.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.++|||||+...|. |.+..+++-- |+.. ....... ..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~~---pGvT-----------~d~~~~~---------------~~ 319 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRIL------GRREAVVEDT---PGVT-----------RDRVSYD---------------AE 319 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCee-----------EEEEEEE---------------EE
Confidence 3568999999999999998887 4444333311 1110 0000000 01
Q ss_pred hCCCcEEEEeCCCCccccH----HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDK----AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~----~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
+.+..+.++||||...... .+..... ...-.++.+++|+|+..+ ..-...+..+...-...-+|+||+|...
T Consensus 320 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~--~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 320 WAGTDFKLVDTGGWEADVEGIDSAIASQAQ--IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred ECCEEEEEEeCCCcCCCCccHHHHHHHHHH--HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 2467899999999653211 1222111 112246899999999543 1111223333333334558999999754
No 417
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.0016 Score=58.61 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=45.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
+++|+|.+||||||+|..|+..+ +.++.+++. +++..........+....+-.+.....+.+ +.+.+... .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~----l~~~i~~~-~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLD----LAELLRAD-A 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEeccccc----HHHHHHhh-c
Confidence 68999999999999999998654 445655554 344433323332332222323333222222 11222221 1
Q ss_pred CCCcEEEEeCCCCc
Q 015657 96 KNVDVVIVDTAGRL 109 (403)
Q Consensus 96 ~~~D~VIIDtpg~l 109 (403)
...++|+|||-..+
T Consensus 75 ~~~~~VlID~Lt~~ 88 (170)
T PRK05800 75 APGRCVLVDCLTTW 88 (170)
T ss_pred CCCCEEEehhHHHH
Confidence 34667888886544
No 418
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.25 E-value=0.00039 Score=65.18 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r 55 (403)
+|.|+|.+||||||++..|+..|.. .+.+|.+|..|-+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5789999999999999999999976 56789999999764
No 419
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.24 E-value=0.004 Score=62.06 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
.-|+++|.++|||||+...|.. .++. |..-++. ++....+ ++.. .
T Consensus 159 adVglVG~PNaGKSTLln~ls~------a~~~-va~ypfT--------T~~p~~G--~v~~------------------~ 203 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSA------AKPK-IADYPFT--------TLHPNLG--VVRV------------------D 203 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHc------CCCc-cCCCCCc--------eeCceEE--EEEe------------------C
Confidence 3478999999999999988762 2332 2111111 1111111 1111 1
Q ss_pred CCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHH---HHhhhc--CCeeEEEEccC
Q 015657 96 KNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV---TTFNIE--IGITGAILTKL 164 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~---~~~~~~--~~i~GvIlNk~ 164 (403)
....++|+|+||.+.-. ..+... -+..+-.++.+++|+|+... ++..... ..+... -...-+|+||+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~--flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKi 281 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHR--FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKI 281 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHH--HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECc
Confidence 34579999999986421 112111 11112235778999998532 2222222 223221 13455899999
Q ss_pred CCCC
Q 015657 165 DGDS 168 (403)
Q Consensus 165 D~~~ 168 (403)
|...
T Consensus 282 DL~~ 285 (335)
T PRK12299 282 DLLD 285 (335)
T ss_pred ccCC
Confidence 9653
No 420
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.014 Score=62.31 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
..+..++++|+.|+||||+|..+|.+|--.+... .++...- ....+ ......+++..+. .....+.+++.+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~----~~~Cg~C~sCr~i---~~~~h~DiieIdaas~igVd~IReIi 108 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD----GDCCNSCSVCESI---NTNQSVDIVELDAASNNGVDEIRNII 108 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCcccHHHHHH---HcCCCCceEEeccccccCHHHHHHHH
Confidence 4467789999999999999999999986443221 1121111 11111 1111223332221 122344445444
Q ss_pred HHHH----hCCCcEEEEeCCCCcc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~ 110 (403)
..+. ..++.++|||-+..+.
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~Lt 132 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLS 132 (605)
T ss_pred HHHHhchhhCCcEEEEEechHhCC
Confidence 4332 1356799999887764
No 421
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.24 E-value=0.00046 Score=69.71 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.|.+|+|+|..||||||++.+|...|..+ ++|.++..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 57899999999999999999999999999 99999986543
No 422
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.24 E-value=0.0024 Score=66.02 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCccccHHhHH-HH-HHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCCchhH
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMD-EL-KDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRGGA 172 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~-el-~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~~~~~ 172 (403)
+++.+.|+||||........-. .+ ......-.++.+++|+|+....+... ........-...-+|+||+|.... .
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~--~ 326 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN--S 326 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc--c
Confidence 4567899999997543211100 00 11122234688999999854321111 222222111233489999997533 1
Q ss_pred HHHHHHHhCCCe
Q 015657 173 ALSVKEVSGKPI 184 (403)
Q Consensus 173 ~~~~~~~~g~pi 184 (403)
...+....+.|+
T Consensus 327 ~~~~~~~~~~~~ 338 (442)
T TIGR00450 327 LEFFVSSKVLNS 338 (442)
T ss_pred hhhhhhhcCCce
Confidence 222334445554
No 423
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.24 E-value=0.0014 Score=58.73 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHh-hh---cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~-~~---~~~i~GvIlNk~D~~ 167 (403)
+.+.+.|+||||...... + .... ...++.+++|+|.+.... +......+ .. .-.+..||.||.|..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-~---~~~~--~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-L---WRHY--YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhHH-H---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 457899999999743211 1 1111 224588999999865432 22222222 11 112455899999964
No 424
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.23 E-value=0.0013 Score=70.31 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=35.2
Q ss_pred cEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 99 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 99 D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.+.|+||||...+.... . ......|.+++|+|+..+ ......+.... ..++ .-+++||+|..
T Consensus 136 ~i~~iDTPGhe~F~~~r-----~-rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~ 200 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMR-----A-RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCCcchhhHH-----H-hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccc
Confidence 78999999975432111 1 112235788999998543 22222222221 2333 45889999964
No 425
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.066 Score=57.31 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.-+..++|+|+.|+||||++..||.++-
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3467789999999999999999998875
No 426
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.22 E-value=0.0017 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA 36 (403)
...++++|.+||||||+...|.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 3668999999999999998876
No 427
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.13 Score=54.79 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.-+..++++|+.|+||||++..||..+-
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 4567889999999999999999998875
No 428
>PRK06749 replicative DNA helicase; Provisional
Probab=97.22 E-value=0.003 Score=65.08 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC---CCCCH--HHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG---TEVKP--SQIAKQ 88 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~---~~~~~--~~~~~~ 88 (403)
+...++|.|.||.|||+++.++|...+++|++|+++.++.........+ .+...+++..... ..... ...+.+
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~--ls~~~~i~~~~l~~~~~~l~~~e~~~~~~ 262 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRM--ASCVGEVSGGRLKNPKHRFAMEDWEKVSK 262 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHH--HHhccCCCHHHHhcCcccCCHHHHHHHHH
Confidence 4467888899999999999999999998899999999886544433332 2223333322111 11222 233556
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
++..+ .+..+-|.|+++. ..+ .+...+..+........-++|||.
T Consensus 263 a~~~l--~~~~i~i~d~~~~-t~~-~I~~~~r~~~~~~~~~~~lvvIDy 307 (428)
T PRK06749 263 AFAEI--GELPLEIYDNAGV-TVQ-DIWMQTRKLKRKHGDKKILIIVDY 307 (428)
T ss_pred HHHHH--hcCCEEEECCCCC-CHH-HHHHHHHHHHHhcCCCCcEEEEeC
Confidence 66665 3567788888774 222 233333333332221233777786
No 429
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.22 E-value=0.0019 Score=59.36 Aligned_cols=71 Identities=14% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEecccHHHHHHHH---HHhh------hcCCeeEEEEccCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN------IEIGITGAILTKLD 165 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~------~~~~i~GvIlNk~D 165 (403)
.+.+.|+||||..........+.. .......++.+++|+|.....+..... ..+. ..-.+.-+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 478899999995432111111110 111223568899999997654333221 1111 11123458899999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 128 l~ 129 (198)
T cd04142 128 QQ 129 (198)
T ss_pred cc
Confidence 74
No 430
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.22 E-value=0.0025 Score=55.48 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~ 169 (403)
..+++.|+||||..... .+... ..-..+.+++|.|....+..... ...+. ...+ .-+|.||+|....
T Consensus 49 ~~~~~~i~D~~G~~~~~-----~~~~~-~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 121 (162)
T cd04106 49 EDVRLMLWDTAGQEEFD-----AITKA-YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQ 121 (162)
T ss_pred CEEEEEEeeCCchHHHH-----HhHHH-HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence 35789999999963221 11111 11245788899888654433222 11121 2333 3488899996432
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 015657 170 ----GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi~ 185 (403)
...+..+.+..+.|+.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 122 AVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred cCCCHHHHHHHHHHcCCeEE
Confidence 1233445556677663
No 431
>PTZ00035 Rad51 protein; Provisional
Probab=97.22 E-value=0.002 Score=64.27 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=54.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCC---------ceEeCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAG 77 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv---------~v~~~~ 77 (403)
...++.++|++|+||||++..|+..... .+.+|++||... ++|.-+.++ ....++ .+....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i---a~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI---AERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH---HHHhCCChHhHhhceEEEccC
Confidence 3588899999999999999999876652 356898999864 345433333 222222 111111
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657 78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l 109 (403)
......+.+......+....+++||||+-..+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital 225 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATAL 225 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence 11111222233333333457889999986643
No 432
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.22 E-value=0.0081 Score=54.19 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
.-|+++|.+|+||||+...|.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 448899999999999998887
No 433
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.22 E-value=0.0012 Score=72.04 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
.++.+.|+||||.-.+ ...... .+..+|.+++|+|+..+ ......+.... ..++ .-+++||+|..
T Consensus 293 ~~~kItfiDTPGhe~F----~~mr~r--g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 293 ENQKIVFLDTPGHEAF----SSMRSR--GANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred CceEEEEEECCcHHHH----HHHHHH--HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 3578999999996432 111111 12235889999998543 22222222222 2233 45899999964
No 434
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00075 Score=62.76 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.++.+|.|+|.+||||||+|..|...|... +|.++..|-|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y 45 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY 45 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence 345899999999999999999999888744 8889998865
No 435
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.21 E-value=0.0071 Score=59.06 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=89.4
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+..+|+++|. .-+||=|++..|...+.++|+++..+... |...+-...|+++-...... -...+..++.+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG--------QTGimia~~Gv~iDav~~DF-vaGavE~~v~~ 181 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG--------QTGIMIAGYGVPIDAVPSDF-VAGAVEALVPE 181 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S--------HHHHHCHSEC--GGGSBGGG-HHHHHHHHHHH
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC--------CceEEEecCCeeccchhhhh-HHHHHHHHHHh
Confidence 5678889999 99999999999999999999999998866 22222234444432221111 12233444444
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-------------cHHHHHHHHHHhhh---cCCe
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-------------TGQEAAALVTTFNI---EIGI 156 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-------------~g~~~~~~~~~~~~---~~~i 156 (403)
+. ++.|++||++-|.+.... ...-...+..-..|+.++|+-++. ..++.++....+.. ..++
T Consensus 182 ~~-~~~d~ivVEGQgsL~hPa-y~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~V 259 (301)
T PF07755_consen 182 AA-EEHDWIVVEGQGSLSHPA-YSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAGTKPPAKV 259 (301)
T ss_dssp HC-CC-SEEEEE--S-TTSTT-THHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCCGC---EE
T ss_pred hC-cCCCEEEEeccccccCcc-ccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhccCCCccE
Confidence 42 255999999988876322 112123455566789999998871 12344444444432 2348
Q ss_pred eEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657 157 TGAILTKLDGDS--RGGAALSVKEVSGKPI 184 (403)
Q Consensus 157 ~GvIlNk~D~~~--~~~~~~~~~~~~g~pi 184 (403)
.||-+|-.+.+. ....+..+.+.+|+|+
T Consensus 260 vgIslNt~~l~~~e~~~~~~~~~~e~glPv 289 (301)
T PF07755_consen 260 VGISLNTSGLSEEEAKAAIERIEEELGLPV 289 (301)
T ss_dssp EEEECC-TTS-HHHHHHHHHHHHHHH-S-E
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCe
Confidence 888888877542 2344566788899998
No 436
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.0084 Score=55.11 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~~~~~~l~~~~ 94 (403)
+|+|+|++||||||+...|+.++... +.+++.+. |+.- . . ... ....+.. ...... ..+.+++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~E--~---~--~~~--~~~~i~q~~vg~~~-~~~~~~i~~aL 71 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPIE--F---V--HES--KRSLINQREVGLDT-LSFENALKAAL 71 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCcc--c---c--ccC--ccceeeecccCCCc-cCHHHHHHHHh
Confidence 58999999999999999999888754 44554443 3221 0 0 000 1111110 000011 12334455544
Q ss_pred hCCCcEEEEeCCC
Q 015657 95 KKNVDVVIVDTAG 107 (403)
Q Consensus 95 ~~~~D~VIIDtpg 107 (403)
..+.|++++|=+.
T Consensus 72 r~~pd~ii~gEir 84 (198)
T cd01131 72 RQDPDVILVGEMR 84 (198)
T ss_pred cCCcCEEEEcCCC
Confidence 4679999999985
No 437
>PRK05642 DNA replication initiation factor; Validated
Probab=97.21 E-value=0.0027 Score=59.98 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+.+.|++|+|||.++..++..+..+|++|++++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5678999999999999999999998889999988865
No 438
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.20 E-value=0.003 Score=58.24 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
.|+++|++||||||+...|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 37889999999999997775
No 439
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.19 E-value=0.00046 Score=63.17 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+|.|+|++||||||++..|+..+ .+.++.++..|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58899999999999999999888 46688899999654
No 440
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.18 E-value=0.0017 Score=57.80 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|.||||...... +. .. ....++.+++|+|+......... +..+.. .-.+.-+|.||+|...
T Consensus 51 ~~~~~~l~Dt~G~~~~~~-~~---~~--~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRP-LW---RH--YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEECCCCHHHHH-HH---HH--HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 357899999999743211 11 11 12245889999999654333222 222211 1123558999999643
No 441
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.18 E-value=0.0026 Score=55.31 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhcC---CeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~~---~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||..... .+ .... .-..+.+++|.|.....+. ......+.... ...-+++||+|..
T Consensus 48 ~~~l~~~D~~G~~~~~-~~---~~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 48 TVRLQLWDTAGQERFR-SL---IPSY--IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEEECCCcHHHH-HH---HHHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 3568999999964321 11 1111 1234778999998654333 22222222211 2345899999983
No 442
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.17 E-value=0.0036 Score=54.13 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.++||||.... ..+... ....++.+++|+|.......... ... ....-...-+++||+|....
T Consensus 48 ~~~~~~~D~~g~~~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 48 RIDLAIWDTAGQERY-----HALGPI-YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEEEECCchHHH-----HHhhHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 457899999996422 111111 11245888999998655433222 112 21111234588999996532
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
...+.......+.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 122 VVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred CCCHHHHHHHHHHcCCEEE
Confidence 1223334445566653
No 443
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.17 E-value=0.0034 Score=68.65 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~ 89 (403)
+.+++.+.|.+|+||||++..++....+.|.+|++||..-. +|. ..+..|++ ++.... ......+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-------~A~~lGvDl~~llv~~~-~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-------YAKKLGVDTDSLLVSQP-DTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-------HHHHcCCChhHeEEecC-CCHHHHHHHH
Confidence 35889999999999999999999888889999999998732 221 23333443 121111 1122222222
Q ss_pred HHHHHhCCCcEEEEeCCCCcc
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~ 110 (403)
...++...+++||||+-..+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred HHHhhcCCCeEEEEcchhhhc
Confidence 222344679999999966543
No 444
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.003 Score=60.53 Aligned_cols=80 Identities=30% Similarity=0.489 Sum_probs=53.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++.-++++|++|+|||.++++++..+.+.|++|+++.. |..+..+...-.. +. ...+....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~~~~--------~~------~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAAFDE--------GR------LEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH----HHHHHHHHHHHhc--------Cc------hHHHHHHHh
Confidence 45568999999999999999999999988999998774 2334444211110 00 011112223
Q ss_pred HhCCCcEEEEeCCCCccccH
Q 015657 94 KKKNVDVVIVDTAGRLQIDK 113 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~ 113 (403)
..+|+.|||=-|....+.
T Consensus 166 --~~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred --hcCCEEEEecccCccCCH
Confidence 579999999888766543
No 445
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.17 E-value=0.0042 Score=54.94 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-----hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-----IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-----~~~~i~GvIlNk~D~~ 167 (403)
..+++.|+||||.......+. ... .-.++.+++|+|.......... ...+. ..+ ..-+|.||+|..
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~ 122 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMV---QHY--YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEV-PRILVGNKCDLR 122 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhH---HHh--hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCC-CEEEEEECccch
Confidence 357899999999642211111 111 1245788999999654333222 21111 122 245899999964
Q ss_pred Cc----hhHHHHHHHHhCCCe
Q 015657 168 SR----GGAALSVKEVSGKPI 184 (403)
Q Consensus 168 ~~----~~~~~~~~~~~g~pi 184 (403)
.. ...+.......+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04115 123 EQIQVPTDLAQRFADAHSMPL 143 (170)
T ss_pred hhcCCCHHHHHHHHHHcCCcE
Confidence 22 223344444555555
No 446
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.17 E-value=0.0025 Score=56.22 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..+++.|+||||......... .. ....+.+++|+|.....+..... +...... ..-+|.||+|...
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLA----AE--IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHh----hh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence 467899999998753221111 11 23457889999986654443321 1122222 3447889999754
No 447
>PRK13695 putative NTPase; Provisional
Probab=97.17 E-value=0.029 Score=50.18 Aligned_cols=31 Identities=42% Similarity=0.542 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM 47 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl 47 (403)
.++++|.+|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3789999999999999999998887787764
No 448
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.17 E-value=0.0016 Score=57.22 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHh-hh---cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~-~~---~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|.||||...... + .... .-.++.+++|+|+..... +....... .. .-.+..++.||.|...
T Consensus 42 ~~~~~~l~D~~G~~~~~~-~---~~~~--~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 42 KNISFTVWDVGGQDKIRP-L---WRHY--FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CCEEEEEEECCCCHhHHH-H---HHHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 457789999999642211 1 1111 234588999999965322 22222221 11 1133458999999753
No 449
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.065 Score=56.07 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+.-++++|+.|+||||+|..+|.++--. |..+ ++... ...-.........+++..+. .....+.+++.+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pCg~--C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Ii 105 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPCGT--CHNCISIKNSNHPDVIEIDAASNTSVDDIKVIL 105 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCccc--cHHHHHHhccCCCCEEEEecccCCCHHHHHHHH
Confidence 446689999999999999999999877422 2211 11111 11111122223344444332 233455566655
Q ss_pred HHHH----hCCCcEEEEeCCCCcc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~ 110 (403)
+.+. ...|.++|||-+-.+.
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~Ls 129 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHMLS 129 (491)
T ss_pred HHHHhccccCCceEEEEeChHhCC
Confidence 5543 2468899999987664
No 450
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.17 E-value=0.0044 Score=55.88 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~ 167 (403)
.+++.|+||||...... + ... ..-..+.+++|.|.....+...... .+...-.+.-+|.||.|..
T Consensus 48 ~~~~~i~Dt~g~~~~~~-~---~~~--~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNGQERFRS-L---NNS--YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCCcHHHHh-h---HHH--HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 46788999999532111 0 011 1224588899999865544333222 1211122345888999964
No 451
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.16 E-value=0.00074 Score=65.85 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=37.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~r 55 (403)
.+.|.+|.|+|.+||||||++..|...+.+. +.+|.++..|.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4578999999999999999999998888743 4579999999765
No 452
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.16 E-value=0.0047 Score=54.01 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
-|+++|.+||||||+...|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999998886
No 453
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.15 E-value=0.0049 Score=53.28 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|++.|.+||||||+...|.
T Consensus 4 i~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6888999999999997776
No 454
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.15 E-value=0.0031 Score=55.34 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+||||||+...|.
T Consensus 3 i~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYV 21 (172)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999997775
No 455
>PRK04040 adenylate kinase; Provisional
Probab=97.14 E-value=0.00081 Score=61.44 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=26.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC 46 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV 46 (403)
|.+|+++|.+||||||++..|+..|. .++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 67899999999999999999998875 24444
No 456
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.14 E-value=0.0019 Score=58.27 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh-hh---cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF-NI---EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~-~~---~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... + .... ...++.+++|+|+........ .+..+ .. .-...-+|.||.|...
T Consensus 59 ~~~~~~l~D~~G~~~~~~-~---~~~~--~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRP-L---WRHY--YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCEEEEEEECCCCHhHHH-H---HHHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 467899999999642111 1 0111 224588999999865432222 22222 11 1123458889999643
No 457
>PRK05636 replicative DNA helicase; Provisional
Probab=97.14 E-value=0.0098 Score=62.50 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~ 89 (403)
+..++++.|.+|+||||++.++|...+ +.|++|+++.+..........+ ++...+++...... .... ...+.++
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~--ls~~s~v~~~~i~~g~l~~~e~~~~~~a 341 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRL--LSAEAEVRLSDMRGGKMDEDAWEKLVQR 341 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 457888899999999999999999877 4689999999886554443332 23333333221111 1222 2234455
Q ss_pred HHHHHhCCCcEEEEeCCC
Q 015657 90 LEEAKKKNVDVVIVDTAG 107 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg 107 (403)
+..+ .+..+.|-|+|.
T Consensus 342 ~~~l--~~~~l~I~d~~~ 357 (505)
T PRK05636 342 LGKI--AQAPIFIDDSAN 357 (505)
T ss_pred HHHH--hcCCEEEECCCC
Confidence 5555 345566666665
No 458
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.13 E-value=0.063 Score=52.36 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
.++++|++|+||||++..++..+...++...++..
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 46999999999999999999888765544434443
No 459
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.13 E-value=0.0038 Score=54.90 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=43.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHh---hhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTF---NIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~---~~~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|.||||...... ..... .-..+.+++|.|.....+..... ... ...-.+.-+|.||+|....
T Consensus 49 ~~~~l~i~Dt~G~~~~~~----~~~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 49 QKIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred EEEEEEEEECCCcHHHHH----HHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 357889999999642211 11111 22458899999996554333222 111 1111234588899996432
Q ss_pred h----hHHHHHHHHhCCCe
Q 015657 170 G----GAALSVKEVSGKPI 184 (403)
Q Consensus 170 ~----~~~~~~~~~~g~pi 184 (403)
. ..+.......+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ 141 (166)
T cd04122 123 RDVTYEEAKQFADENGLLF 141 (166)
T ss_pred cCcCHHHHHHHHHHcCCEE
Confidence 1 23333444445544
No 460
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.13 E-value=0.0028 Score=62.28 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=35.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAA 58 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~ 58 (403)
...++.|+|.+|+||||++..++...+. .+.+|++||++- +++.-
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~r 145 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPER 145 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHH
Confidence 3588899999999999999999887653 223899999875 34443
No 461
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.12 E-value=0.0039 Score=56.56 Aligned_cols=113 Identities=24% Similarity=0.306 Sum_probs=56.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...++++|+.|||||++-..|... ..+. ++.. ... ++..... .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~-----~~~~----------T~tS---~e~--n~~~~~~-~---------------- 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG-----KTVP----------TVTS---MEN--NIAYNVN-N---------------- 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS-----S-------------B------SSE--EEECCGS-S----------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC-----CcCC----------eecc---ccC--CceEEee-c----------------
Confidence 356899999999999999777742 1111 1000 001 0100000 0
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHh---------hhcCCeeEEEEccC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTF---------NIEIGITGAILTKL 164 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~---------~~~~~i~GvIlNk~ 164 (403)
...-.+-|||.||....-..+...+.. ....-.+++|||+.+.+ ++...+..+ .......-|++||.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~---~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKY---LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHH---HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhc---hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 134578899999987654444444222 22347899999996543 333333211 11222233788999
Q ss_pred CCC
Q 015657 165 DGD 167 (403)
Q Consensus 165 D~~ 167 (403)
|..
T Consensus 123 Dl~ 125 (181)
T PF09439_consen 123 DLF 125 (181)
T ss_dssp TST
T ss_pred ccc
Confidence 854
No 462
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.12 E-value=0.0025 Score=65.20 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||.-.+ ...+.. ....+|.+++|+|+..+ ......+..+. ......-+++||+|...
T Consensus 79 ~~~i~liDtPGh~~f----~~~~~~--g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 79 LRRVSFVDAPGHETL----MATMLS--GAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccEEEEEECCCHHHH----HHHHHH--HHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 467899999996432 222211 12245889999999642 11222222221 12333457899999754
No 463
>PRK08006 replicative DNA helicase; Provisional
Probab=97.11 E-value=0.0092 Score=62.22 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHH--HHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ--IAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~--~~~~~ 89 (403)
+...++|.|-||.|||+++.++|..++ +.|++|+++.+..-.......+ ++...+++..... ......+ .+..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rl--la~~~~v~~~~i~~~~l~~~e~~~~~~a 300 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRM--LASLSRVDQTRIRTGQLDDEDWARISGT 300 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 447788889999999999999999987 4699999999885544433332 2222333321111 1222222 23344
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---cc--------HH---HHHHHHHHhhhcCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--------GQ---EAAALVTTFNIEIG 155 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~--------g~---~~~~~~~~~~~~~~ 155 (403)
+..+. ....+.|-|+++. ..+ .+...+..+.... +..-++|||. .. .+ .+.+.++.+...++
T Consensus 301 ~~~~~-~~~~l~I~d~~~~-t~~-~i~~~~r~~~~~~-~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ 376 (471)
T PRK08006 301 MGILL-EKRNMYIDDSSGL-TPT-EVRSRARRIFREH-GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQ 376 (471)
T ss_pred HHHHH-hcCCEEEECCCCC-CHH-HHHHHHHHHHHhc-CCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 44431 2445666666543 221 2222222222211 1123666675 10 11 22233455667788
Q ss_pred eeEEEEccCCCC
Q 015657 156 ITGAILTKLDGD 167 (403)
Q Consensus 156 i~GvIlNk~D~~ 167 (403)
+..|++..+...
T Consensus 377 ipVi~LsQLnR~ 388 (471)
T PRK08006 377 VPVVALSQLNRS 388 (471)
T ss_pred CeEEEEEecCcc
Confidence 887888777643
No 464
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0084 Score=58.63 Aligned_cols=90 Identities=24% Similarity=0.359 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----CC------CcEEEEeccCCChhhHHHHHHhhhccCCc--------eEeC-
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK----QG------KSCMLVAGDVYRPAAIDQLVILGEQVGVP--------VYTA- 76 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~----~G------~kVllVd~D~~rp~~~~~l~~~~~~~gv~--------v~~~- 76 (403)
...++.|.+|+||||++.-|.-+++. .| .+|++|.|..+++.....+.......+++ ....
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 44566699999999999988877763 24 47999999999999888776665555543 1110
Q ss_pred --CC---CCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657 77 --GT---EVKPSQIAKQGLEEAKKKNVDVVIVDTA 106 (403)
Q Consensus 77 --~~---~~~~~~~~~~~l~~~~~~~~D~VIIDtp 106 (403)
.. ...| ...++....+....+|+||||+-
T Consensus 170 Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred cCCCccccccH-HHHHHHHHHHHHhCCCeEEEcch
Confidence 01 1223 34555555555568999999983
No 465
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.11 E-value=0.006 Score=53.65 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HH---Hhh----hcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VT---TFN----IEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~---~~~----~~~~i~GvIlNk~D 165 (403)
..+.+.|+||||...... +... ....++.+++|.|....+..... .. .+. ... +.-+|.||.|
T Consensus 47 ~~~~l~i~Dt~G~~~~~~-----~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~nK~D 119 (165)
T cd04140 47 NICTLQITDTTGSHQFPA-----MQRL-SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI-PIMLVGNKCD 119 (165)
T ss_pred EEEEEEEEECCCCCcchH-----HHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-CEEEEEECcc
Confidence 356788999999754321 1111 11235788999998655433221 11 111 122 3448999999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 120 l~~ 122 (165)
T cd04140 120 ESH 122 (165)
T ss_pred ccc
Confidence 743
No 466
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.11 E-value=0.0015 Score=56.99 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhcC---CeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~~---~i~GvIlNk~D~~ 167 (403)
.+.+.|+|+||.... ..+.. .....++.+++|+|+....+. ......+.... -+.-++.||.|..
T Consensus 49 ~~~~~i~D~~G~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 49 TVKFEIWDTAGQERY-----RSLAP-MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEeCCchHHH-----HHHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 567889999996321 11111 112245888999998655333 22222222211 2234788999965
No 467
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0047 Score=62.16 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC--CCCCCHHHHH-----
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GTEVKPSQIA----- 86 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~--~~~~~~~~~~----- 86 (403)
+..-+++.|+.-+||||+...|.+.+.. || +...+.+...+...|-..+.. -.+....+.-
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~-------id-----~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi 73 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGE-------ID-----KRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTI 73 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCC-------CC-----HHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEE
Confidence 3455788899999999999999865532 22 334444444443343331110 0000111110
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH----------HHHHHHHHHhhhcCCe
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG----------QEAAALVTTFNIEIGI 156 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g----------~~~~~~~~~~~~~~~i 156 (403)
.-+...+..+.|.+-||||||.-.+-..+ +..+..+|..+|||||..+ |.-....-.....++-
T Consensus 74 ~~~~~~fet~k~~~tIiDaPGHrdFvknm------ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 74 DVAHSKFETDKYNFTIIDAPGHRDFVKNM------ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred EEEEEEeecCCceEEEeeCCchHHHHHHh------hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCce
Confidence 00011222367889999999943222222 2233445888999999544 2211111111223444
Q ss_pred eEEEEccCCCCCch----h----HHHHHHHHhCCC---eEEee
Q 015657 157 TGAILTKLDGDSRG----G----AALSVKEVSGKP---IKLVG 188 (403)
Q Consensus 157 ~GvIlNk~D~~~~~----~----~~~~~~~~~g~p---i~fig 188 (403)
.-|.+||+|..... . .+..+.+..|.. +.|+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIP 190 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIP 190 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEe
Confidence 55888999976422 1 122355566664 44665
No 468
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0065 Score=63.06 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ 42 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~ 42 (403)
.+|.|++++|++|+||||+...|.+++.+.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ 96 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ 96 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHh
Confidence 467888899999999999999999888753
No 469
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.08 Score=56.93 Aligned_cols=97 Identities=24% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE-EEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV-llVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+..++|+|+.|+||||++..||..|--.+..- --++.++.+. .............+++..+. .....+.+++.+
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~--C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli 113 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV--CQACRDIDSGRFVDYTELDAASNRGVDEVQQLL 113 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc--cHHHHHHHcCCCCceeecCcccccCHHHHHHHH
Confidence 4467789999999999999999998886322100 0011111110 01111111222233333322 223455566666
Q ss_pred HHHH----hCCCcEEEEeCCCCccc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~~ 111 (403)
+.+. ...|.++|||-.-.+..
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCH
Confidence 5543 24589999998887753
No 470
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.08 E-value=0.00091 Score=60.78 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
..+|+|.|..||||||++..|+.+|...|++|.++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4789999999999999999999999999999976543
No 471
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.07 E-value=0.0056 Score=55.97 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhh--------hcCCeeEEEEccC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN--------IEIGITGAILTKL 164 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~--------~~~~i~GvIlNk~ 164 (403)
..+.+.|.||||.-... .+. ... .-..+.+++|.|........... ..+. ..+ +.-+|.||.
T Consensus 48 ~~~~l~l~Dt~G~~~~~-~~~---~~~--~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~-piilv~NK~ 120 (201)
T cd04107 48 TVVRLQLWDIAGQERFG-GMT---RVY--YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI-PCLLLANKC 120 (201)
T ss_pred CEEEEEEEECCCchhhh-hhH---HHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCC-cEEEEEECC
Confidence 35788999999974321 111 111 12458889999986544333221 1111 122 235888999
Q ss_pred CCC
Q 015657 165 DGD 167 (403)
Q Consensus 165 D~~ 167 (403)
|..
T Consensus 121 Dl~ 123 (201)
T cd04107 121 DLK 123 (201)
T ss_pred Ccc
Confidence 974
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.025 Score=59.60 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+..++++|++|+||||+|..||..|--. +.. .++...- ..........-.+++..+. .....+.+++.+
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C--~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~ 108 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-----ANPCNDC--ENCREIDEGRFPDLFEVDAASRTKVEDTRELL 108 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----cccCCCC--HHHHHHhcCCCceEEEEcccccCCHHHHHHHH
Confidence 446778999999999999999999888532 211 1111110 0111111111223333222 223444455555
Q ss_pred HHHH----hCCCcEEEEeCCCCccc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~~ 111 (403)
+.+. ...|.++|||-+-.+..
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred HHHhhccccCCcEEEEEEChHhcCH
Confidence 5442 24688999999887753
No 473
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.06 E-value=0.00079 Score=62.20 Aligned_cols=41 Identities=34% Similarity=0.495 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+.++.+|+|+|++||||||++..|+..+.. ..+.++..|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 456789999999999999999999987764 46777888765
No 474
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.12 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.-+..++|+|++|+||||++..||..|-
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3467779999999999999999998775
No 475
>PRK07004 replicative DNA helicase; Provisional
Probab=97.06 E-value=0.012 Score=61.11 Aligned_cols=91 Identities=15% Similarity=0.221 Sum_probs=58.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~--~~~~~~~ 89 (403)
+...+++.|.||+|||+++.++|...+. .|++|+++.+..........+ ++...+++..... ..... ...+..+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~--la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRM--LGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 4477888999999999999999998874 699999999886654444333 2222333322111 11222 2334566
Q ss_pred HHHHHhCCCcEEEEeCCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGR 108 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~ 108 (403)
+..+ .+..+.|-|+|..
T Consensus 290 ~~~l--~~~~l~I~d~~~~ 306 (460)
T PRK07004 290 VQKM--SEAQLFIDETGGL 306 (460)
T ss_pred HHHH--hcCCEEEECCCCC
Confidence 6666 3466777777753
No 476
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.05 E-value=0.004 Score=56.90 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=55.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCC-----CH---HH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEV-----KP---SQ 84 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~-----~~---~~ 84 (403)
.-.|.+.+..|-||||.|..+|......|++|+++..=--. .+-..-+ ....++.++..+... .+ ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l---~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL---EFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH---hcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 34677888899999999999999999999999998754222 1212222 222245544433211 11 12
Q ss_pred HHHHHHH----HHHhCCCcEEEEeCC
Q 015657 85 IAKQGLE----EAKKKNVDVVIVDTA 106 (403)
Q Consensus 85 ~~~~~l~----~~~~~~~D~VIIDtp 106 (403)
.++++++ .+....||+||+|=-
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi 124 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDEL 124 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehh
Confidence 2333333 334578999999953
No 477
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.05 E-value=0.00089 Score=58.78 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH----hhhc--CCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT----FNIE--IGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~----~~~~--~~i~GvIlNk~D~~ 167 (403)
..+.+.++||||...... +... ....++.+++|+|+....+....... +... -...-+|.||.|..
T Consensus 46 ~~~~l~~~D~~g~~~~~~-----~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDR-----LRPL-SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEEEeCCCcccccc-----cchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 457899999999753211 1110 11235788999998665444333221 1111 12345888999954
No 478
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.078 Score=56.91 Aligned_cols=96 Identities=22% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE-EEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl-lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
.-+.-++++|+.|+||||++..||..|--.+.... -...++... .............+++..+. .....+.+++.+
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~--c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV--GEHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc--cHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 44677899999999999999999988753221110 000011110 11111122223334443321 223455566665
Q ss_pred HHHH----hCCCcEEEEeCCCCcc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~ 110 (403)
+.+. ..+|.+||||-+-.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCC
Confidence 5553 2467899999876664
No 479
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.04 E-value=0.0038 Score=62.38 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh---C---CCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE 79 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~---~---G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~ 79 (403)
...++-|+|.+|+|||++|..|+...+. . +.+|++||..- ++|.-+.+. .+..+++ ++... .
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i---a~~~g~d~~~~l~~I~~~~-~ 200 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI---AERFGMDADAVLDNIIYAR-A 200 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH---HHHcCCChhhhcCeEEEec-C
Confidence 3488889999999999999999876542 1 36899999863 455543333 2223322 11111 1
Q ss_pred CCHHH---HHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657 80 VKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 80 ~~~~~---~~~~~l~~~~~~~~D~VIIDtpg~l 109 (403)
.+... .+......+...++++||||+-..+
T Consensus 201 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 201 YTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 12222 2222222333457899999986654
No 480
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.04 E-value=0.005 Score=65.75 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|++|+||||+...|. |.++..+. .+++.... . ..+... .
T Consensus 119 lrIvLVGKTGVGKSSLINSIL------Gekvf~vs--s~~~~TTr-----~----~ei~~~------------------i 163 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIF------GEVKFSTD--AFGMGTTS-----V----QEIEGL------------------V 163 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cccccccc--CCCCCceE-----E----EEEEEE------------------E
Confidence 458999999999999999887 65554332 22222210 0 000000 1
Q ss_pred CCCcEEEEeCCCCcccc------HHhHHHHHHHhhhcCCceEEEEEecc---cH-H--HHHHHH-HHhhhcC-CeeEEEE
Q 015657 96 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAM---TG-Q--EAAALV-TTFNIEI-GITGAIL 161 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d------~~l~~el~~i~~~~~~~~vllVvda~---~g-~--~~~~~~-~~~~~~~-~i~GvIl 161 (403)
.+..+.||||||..... .....++..+.....++.+++|.... .. + .+++.+ ..|.+.+ .-.-||+
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 35689999999987532 22333333333333467666665431 11 1 223322 2344433 4456899
Q ss_pred ccCCCCC
Q 015657 162 TKLDGDS 168 (403)
Q Consensus 162 Nk~D~~~ 168 (403)
|+.|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9998653
No 481
>PTZ00301 uridine kinase; Provisional
Probab=97.03 E-value=0.0012 Score=61.49 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR 55 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~r 55 (403)
+..+|.|+|.+||||||+|..|+..+.+. | ..|.++..|-|.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 34789999999999999999999888643 4 346688888653
No 482
>PRK06904 replicative DNA helicase; Validated
Probab=97.02 E-value=0.017 Score=60.33 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CCCCCCHHH--HHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AGTEVKPSQ--IAKQ 88 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~~~~~~~~--~~~~ 88 (403)
+...+++.|-||+|||+++.++|...+. .|++|+++.++.........+ ++...+++... .+......+ .+..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM--LASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 3467888899999999999999998875 599999999985544443332 22333333221 121223332 3344
Q ss_pred HHHHHHhCCCcEEEEeCCCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGR 108 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~ 108 (403)
++..+. ....+.|-|+|+.
T Consensus 298 a~~~l~-~~~~l~I~d~~~~ 316 (472)
T PRK06904 298 TVGMFK-QKPNLYIDDSSGL 316 (472)
T ss_pred HHHHHh-cCCCEEEECCCCC
Confidence 555552 2345777777763
No 483
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.01 E-value=0.022 Score=50.60 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=51.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE---eccCCChhhHHHHHHhhhccCCceEeCCCC-----CCHHH---HH
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV---AGDVYRPAAIDQLVILGEQVGVPVYTAGTE-----VKPSQ---IA 86 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllV---d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-----~~~~~---~~ 86 (403)
|.|....|.||||+|..+|...+.+|++|+++ ..+. ..+-..-+..+ .++.++..+.. ..+.+ .+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL---PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHHHH
Confidence 44445559999999999999999999999994 4431 11222223222 25555554331 11222 22
Q ss_pred HHHHH----HHHhCCCcEEEEeCCCC
Q 015657 87 KQGLE----EAKKKNVDVVIVDTAGR 108 (403)
Q Consensus 87 ~~~l~----~~~~~~~D~VIIDtpg~ 108 (403)
+++++ .+....||++|+|=-..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHh
Confidence 33333 33356899999996443
No 484
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.01 E-value=0.0023 Score=53.50 Aligned_cols=68 Identities=19% Similarity=0.077 Sum_probs=38.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..+++.++|+||........ .......+.+++|+|+.......... ..........-+|+||+|...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 36789999999965321111 11222457889999996553332221 111222233458999999764
Q ss_pred c
Q 015657 169 R 169 (403)
Q Consensus 169 ~ 169 (403)
.
T Consensus 117 ~ 117 (157)
T cd00882 117 E 117 (157)
T ss_pred c
Confidence 3
No 485
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.01 E-value=0.0099 Score=55.51 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=36.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~ 167 (403)
..+++.|+||||... .. ........++.+++|.|.......... ...+.. .-.+.-+|.||+|..
T Consensus 48 ~~~~l~i~Dt~G~~~----~~---~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 48 EESTLVVIDHWEQEM----WT---EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEEEEEEeCCCcch----HH---HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 357899999999751 11 111111146889999999655433222 221211 112345888999964
No 486
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.01 E-value=0.025 Score=58.69 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.-++++|.+|+|||+++.+++.++.+ .+++|+++.++-+.......+. . ....+.+....+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~---~--------------~~~~~~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQ---K--------------THKEIEQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH---H--------------hhhHHHHHHHHh
Confidence 34789999999999999999998874 4789998887632222211111 0 001122233333
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~ 126 (403)
..+|++|||=.+.+........++..+.+..
T Consensus 205 --~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~ 235 (450)
T PRK14087 205 --CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF 235 (450)
T ss_pred --ccCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence 4789999999987765444444554544444
No 487
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.99 E-value=0.0041 Score=66.90 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
+..+.||||||.-.+ ...+ +......|.+++|+|+..+ ......+.... ...+..-||+||+|...
T Consensus 50 g~~i~~IDtPGhe~f----i~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 50 GRVLGFIDVPGHEKF----LSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred CcEEEEEECCCHHHH----HHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence 445789999996322 2221 1223345889999998543 22222222111 12333348999999753
No 488
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.98 E-value=0.0086 Score=52.02 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
-|+++|.+||||||++..+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999987665
No 489
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.98 E-value=0.0035 Score=67.02 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+|.+|++.|.+++||||+...|.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~ 27 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIR 27 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998884
No 490
>PTZ00369 Ras-like protein; Provisional
Probab=96.98 E-value=0.0077 Score=54.49 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCC-eeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIG-ITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~-i~GvIlNk~D~~~~ 169 (403)
.+.+-|+||||.-.... +.. .. .-..+.+++|.|.......... ...+. ..-+ +..+|.||+|....
T Consensus 52 ~~~l~i~Dt~G~~~~~~-l~~---~~--~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSA-MRD---QY--MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred EEEEEEEeCCCCccchh-hHH---HH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45677899999754321 111 11 1134788999998655432222 12221 1112 23578899996422
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+....+..+.|+
T Consensus 126 ~~i~~~~~~~~~~~~~~~~ 144 (189)
T PTZ00369 126 RQVSTGEGQELAKSFGIPF 144 (189)
T ss_pred cccCHHHHHHHHHHhCCEE
Confidence 122334445556665
No 491
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.97 E-value=0.0072 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+|+++|++||||||+|..||..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999988765
No 492
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.97 E-value=0.0012 Score=59.69 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
+|++.|..||||||++..|+.+|..+|++|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68999999999999999999999999999976643
No 493
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.11 Score=55.47 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l 90 (403)
..+..++++|+.|+||||++..||.++--.... +.++...- ....+ ......+++..+. .....+.+++.+
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~----~~~pC~~C~~C~~i---~~g~~~dv~eidaas~~~vd~ir~i~ 108 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP----DGEPCNECEICKAI---TNGSLMDVIEIDAASNNGVDEIRDIR 108 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCccHHHHHH---hcCCCCCeEEeeccccCCHHHHHHHH
Confidence 456888999999999999999999877532110 11111100 11111 1222233332222 122344455555
Q ss_pred HHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657 91 EEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 138 (403)
Q Consensus 91 ~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~ 138 (403)
+.+. ...|.++|||-+-.+.. .....|....... |..+++++-+.
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~Lt~--~a~naLLKtLEep-p~~~ifIlatt 157 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHMLST--GAFNALLKTLEEP-PAHVIFILATT 157 (559)
T ss_pred HHHhhCcccCCeEEEEEECcccCCH--HHHHHHHHHhcCC-CCCeEEEEEeC
Confidence 5443 24688999999876642 2222332222222 34555555443
No 494
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.96 E-value=0.0099 Score=51.97 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh-----hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-----IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~-----~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||...... + ... .....+.+++|.|.....+.. .....+. ...+ .-+|.||.|...
T Consensus 48 ~~~l~i~Dt~G~~~~~~-~----~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 120 (164)
T cd04175 48 QCMLEILDTAGTEQFTA-M----RDL-YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLED 120 (164)
T ss_pred EEEEEEEECCCcccchh-H----HHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchh
Confidence 46677999999753311 1 111 111247888998875443322 2222221 1223 448999999643
Q ss_pred ch----hHHHHHHHHhCCCe
Q 015657 169 RG----GAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~~----~~~~~~~~~~g~pi 184 (403)
.. .....+.+..+.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04175 121 ERVVGKEQGQNLARQWGCAF 140 (164)
T ss_pred ccEEcHHHHHHHHHHhCCEE
Confidence 21 22334455566665
No 495
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.96 E-value=0.0081 Score=54.11 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
...-|++.|+.|+||||+..+++ -+....+++|...-... . . .-.....+. ..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k--~----k--r~tTva~D~------------g~~ 62 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGK--G----K--RPTTVAMDF------------GSI 62 (187)
T ss_pred cceeEEEEcccccchhhHHHHhh------ccccceeeccccccccc--c----c--cceeEeecc------------cce
Confidence 34568999999999999998888 44555555552211110 0 0 000111100 000
Q ss_pred H-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcC-CeeEEEEccCCCCCc
Q 015657 94 K-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEI-GITGAILTKLDGDSR 169 (403)
Q Consensus 94 ~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~-~i~GvIlNk~D~~~~ 169 (403)
. .+++-+-++||||...++ .+- ..+.+ .....++++|++..+ ++..++.-+.... -...|.+||.|....
T Consensus 63 ~~~~~~~v~LfgtPGq~RF~--fm~--~~l~~--ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 63 ELDEDTGVHLFGTPGQERFK--FMW--EILSR--GAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred EEcCcceEEEecCCCcHHHH--HHH--HHHhC--CcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC
Confidence 0 245789999999976432 111 11111 246778899985543 3455555444333 335588999996543
Q ss_pred --hhHHHHHHHHh--CCCe
Q 015657 170 --GGAALSVKEVS--GKPI 184 (403)
Q Consensus 170 --~~~~~~~~~~~--g~pi 184 (403)
...+.++.... ..|+
T Consensus 137 ~ppe~i~e~l~~~~~~~~v 155 (187)
T COG2229 137 LPPEKIREALKLELLSVPV 155 (187)
T ss_pred CCHHHHHHHHHhccCCCce
Confidence 33444444433 4555
No 496
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.041 Score=57.26 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~~ 92 (403)
-+..++++|+.|+||||+|..||..+--..... ...|....+ ...+ ......+++..+. .....+.+++..+.
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~s--C~~i---~~g~~~dviEIdaas~~gVd~IReL~e~ 112 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTS--CLEI---TKGISSDVLEIDAASNRGIENIRELRDN 112 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcH--HHHH---HccCCccceeechhhcccHHHHHHHHHH
Confidence 356789999999999999999998875321110 111211111 1111 1112222332221 11223444444443
Q ss_pred HH----hCCCcEEEEeCCCCccc
Q 015657 93 AK----KKNVDVVIVDTAGRLQI 111 (403)
Q Consensus 93 ~~----~~~~D~VIIDtpg~l~~ 111 (403)
+. ...|.++|||=+-.+..
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCH
Confidence 32 34688999999887753
No 497
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.96 E-value=0.0037 Score=57.05 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HH---Hhhh-cCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VT---TFNI-EIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~---~~~~-~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+|+||...... +... .....+.+++|+|.....+.... .. .+.. .-...-+|+||+|...
T Consensus 47 ~~l~i~D~~G~~~~~~-----~~~~-~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 47 LTLDILDTSGSYSFPA-----MRKL-SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEECCCchhhhH-----HHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 6788999999653211 1111 12245889999998654333222 11 1211 1223458899999743
No 498
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.96 E-value=0.0097 Score=54.01 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|.++|.-||||||++ .+|++.|.. ++|+|
T Consensus 2 iIglTG~igsGKStv~----~~l~~~G~~--vidaD 31 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVS----KILAELGFP--VIDAD 31 (180)
T ss_dssp EEEEEESTTSSHHHHH----HHHHHTT-E--EEEHH
T ss_pred EEEEECCCcCCHHHHH----HHHHHCCCC--EECcc
Confidence 6899999999999999 556666655 56888
No 499
>PRK06321 replicative DNA helicase; Provisional
Probab=96.96 E-value=0.015 Score=60.75 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=65.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCH--HHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKP--SQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~--~~~~~~~ 89 (403)
+...++|.|.||+|||+++.++|..++. .|++|+++.++.-.......+ .+...+++.-... ..... ...+..+
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI--ICSRSEVESKKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 3478888999999999999999999874 589999999886554443333 2223334322111 11222 2234455
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
+..+. +..+.|-|+|+. .++ .+...+..+..... .-++|||.
T Consensus 303 ~~~l~--~~~~~idd~~~~-ti~-~i~~~~r~~~~~~~--~~lvvIDy 344 (472)
T PRK06321 303 VNEMQ--EHTLLIDDQPGL-KIT-DLRARARRMKESYD--IQFLIIDY 344 (472)
T ss_pred HHHHH--cCCEEEeCCCCC-CHH-HHHHHHHHHHHhcC--CCEEEEcc
Confidence 55553 445666666653 322 22233333322211 12777776
No 500
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0024 Score=65.12 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=83.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
..|-..++.+=--||||++-.|.....- ++.--.+....|.+ .+....|+.+-....... +..-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~-------~~~Rem~~Q~LDsM-diERERGITIKaq~v~l~--------Yk~~ 71 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGG-------LSEREMRAQVLDSM-DIERERGITIKAQAVRLN--------YKAK 71 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcC-------cChHHHHHHhhhhh-hhHhhcCceEEeeEEEEE--------EEeC
Confidence 3466677778888999999887754431 11101111112222 233344554321110000 0000
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~~~~i~GvIlNk~D~~~~- 169 (403)
..+.|-+-+|||||...+.-+...+|+ .|..++|||||+.|- +..+....+...+.+. -|+||+|..+.
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLA------ACEGalLvVDAsQGveAQTlAN~YlAle~~LeIi-PViNKIDLP~Ad 144 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLA------ACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPAAD 144 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHh------hCCCcEEEEECccchHHHHHHHHHHHHHcCcEEE-EeeecccCCCCC
Confidence 015688999999999877655555543 247889999998774 4445555566666654 68999996532
Q ss_pred -hhHHHHHHHHhCCCe
Q 015657 170 -GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 -~~~~~~~~~~~g~pi 184 (403)
......+.+..|++-
T Consensus 145 pervk~eIe~~iGid~ 160 (603)
T COG0481 145 PERVKQEIEDIIGIDA 160 (603)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 234445555555543
Done!