Query 015657
Match_columns 403
No_of_seqs 416 out of 3681
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 4.8E-77 1.6E-81 604.8 39.5 347 2-356 88-437 (443)
2 3kl4_A SRP54, signal recogniti 100.0 5.3E-75 1.8E-79 589.7 30.1 330 13-344 95-432 (433)
3 2ffh_A Protein (FFH); SRP54, s 100.0 1E-69 3.5E-74 550.2 34.0 333 2-347 87-419 (425)
4 2xxa_A Signal recognition part 100.0 4.4E-69 1.5E-73 548.3 37.5 342 2-346 87-432 (433)
5 2j37_W Signal recognition part 100.0 1.7E-67 5.7E-72 544.4 15.6 390 2-392 88-490 (504)
6 2v3c_C SRP54, signal recogniti 100.0 2.2E-64 7.4E-69 513.7 14.7 334 6-344 90-426 (432)
7 2jqe_A SRP54, signal recogniti 100.0 5.6E-39 1.9E-43 267.0 4.8 115 234-354 2-118 (119)
8 1hq1_A Signal recognition part 100.0 1.6E-38 5.5E-43 258.5 7.1 103 241-345 1-104 (105)
9 1mfq_C SRP54, signal recogniti 100.0 4.9E-38 1.7E-42 263.6 7.9 108 239-346 12-124 (129)
10 1qb2_A SRP54, human signal rec 100.0 1.2E-37 4E-42 255.4 9.2 104 241-344 1-109 (109)
11 1j8m_F SRP54, signal recogniti 100.0 1.3E-31 4.3E-36 260.2 23.1 209 2-211 85-296 (297)
12 1ls1_A Signal recognition part 100.0 7.6E-31 2.6E-35 254.5 24.7 205 6-212 91-295 (295)
13 1vma_A Cell division protein F 100.0 8.5E-31 2.9E-35 255.2 24.6 204 7-210 96-305 (306)
14 1zu4_A FTSY; GTPase, signal re 100.0 9.2E-31 3.1E-35 256.6 23.3 208 6-214 96-313 (320)
15 3e70_C DPA, signal recognition 100.0 1.5E-27 5.1E-32 234.5 23.2 202 11-212 125-326 (328)
16 2yhs_A FTSY, cell division pro 100.0 2E-27 6.7E-32 243.2 22.7 209 5-213 283-497 (503)
17 1dul_A Signal recognition part 99.9 4.3E-28 1.5E-32 181.7 7.4 66 277-344 4-69 (69)
18 1rj9_A FTSY, signal recognitio 99.9 1.1E-25 3.9E-30 218.9 21.6 197 14-210 101-303 (304)
19 2og2_A Putative signal recogni 99.9 2.1E-25 7.1E-30 221.4 23.1 205 6-210 148-359 (359)
20 2px0_A Flagellar biosynthesis 99.9 1.9E-25 6.4E-30 216.7 20.0 191 13-210 103-296 (296)
21 3b9q_A Chloroplast SRP recepto 99.9 2.5E-24 8.7E-29 209.2 22.7 205 6-210 91-302 (302)
22 4dzz_A Plasmid partitioning pr 99.7 2.6E-16 9E-21 142.4 18.6 151 16-184 2-161 (206)
23 1cp2_A CP2, nitrogenase iron p 99.7 4.7E-16 1.6E-20 147.2 19.5 170 16-192 2-210 (269)
24 3ea0_A ATPase, para family; al 99.7 1.2E-16 4E-21 148.9 13.5 161 14-184 3-201 (245)
25 2ph1_A Nucleotide-binding prot 99.7 2.4E-16 8.1E-21 149.4 15.7 165 14-184 17-222 (262)
26 3end_A Light-independent proto 99.7 3.9E-16 1.3E-20 151.0 17.3 168 13-192 39-246 (307)
27 1hyq_A MIND, cell division inh 99.7 3.9E-16 1.3E-20 147.3 16.1 166 15-191 2-197 (263)
28 2afh_E Nitrogenase iron protei 99.7 6.6E-16 2.3E-20 148.1 17.9 170 15-191 2-212 (289)
29 3fwy_A Light-independent proto 99.7 3.1E-16 1.1E-20 153.0 15.8 169 13-193 46-254 (314)
30 1g3q_A MIND ATPase, cell divis 99.7 2.7E-16 9.1E-21 145.8 13.0 167 15-192 2-199 (237)
31 3q9l_A Septum site-determining 99.7 5.7E-16 1.9E-20 145.4 14.8 168 15-192 2-213 (260)
32 2oze_A ORF delta'; para, walke 99.7 3.7E-16 1.3E-20 150.3 13.6 159 15-182 34-242 (298)
33 3bfv_A CAPA1, CAPB2, membrane 99.7 7.9E-16 2.7E-20 147.1 15.4 149 12-169 79-259 (271)
34 3la6_A Tyrosine-protein kinase 99.7 8.8E-16 3E-20 147.9 15.7 150 12-169 89-269 (286)
35 3k9g_A PF-32 protein; ssgcid, 99.7 5.3E-16 1.8E-20 146.9 13.5 172 10-195 22-235 (267)
36 1wcv_1 SOJ, segregation protei 99.6 3.6E-16 1.2E-20 147.5 10.9 163 13-184 4-201 (257)
37 3cio_A ETK, tyrosine-protein k 99.6 1.4E-15 4.7E-20 147.4 14.7 149 12-168 101-280 (299)
38 3kjh_A CO dehydrogenase/acetyl 99.6 2.8E-15 9.7E-20 139.3 14.9 155 18-184 3-211 (254)
39 1byi_A Dethiobiotin synthase; 99.6 6.7E-14 2.3E-18 128.6 19.6 175 16-194 2-207 (224)
40 3cwq_A Para family chromosome 99.6 4.4E-14 1.5E-18 129.5 16.7 143 17-184 2-152 (209)
41 3ug7_A Arsenical pump-driving 99.6 1.2E-13 4.1E-18 136.6 19.4 42 13-54 24-65 (349)
42 2xj4_A MIPZ; replication, cell 99.5 4.3E-14 1.5E-18 135.6 14.2 114 15-137 4-135 (286)
43 3pg5_A Uncharacterized protein 99.5 4.3E-14 1.5E-18 140.3 13.7 43 16-58 2-45 (361)
44 3ez2_A Plasmid partition prote 99.5 8E-14 2.7E-18 139.9 12.3 164 12-184 105-338 (398)
45 3zq6_A Putative arsenical pump 99.5 4.7E-13 1.6E-17 130.9 17.5 40 15-54 14-53 (324)
46 3fgn_A Dethiobiotin synthetase 99.5 4.1E-13 1.4E-17 126.8 15.7 176 10-195 21-226 (251)
47 3ez9_A Para; DNA binding, wing 99.5 8.7E-14 3E-18 139.9 10.7 164 12-184 108-341 (403)
48 2woo_A ATPase GET3; tail-ancho 99.5 1.7E-12 5.7E-17 127.3 19.5 43 12-54 16-58 (329)
49 3p32_A Probable GTPase RV1496/ 99.5 5E-13 1.7E-17 132.3 15.1 147 12-169 76-232 (355)
50 3iqw_A Tail-anchored protein t 99.5 4.8E-13 1.6E-17 131.5 14.2 44 12-55 13-56 (334)
51 3of5_A Dethiobiotin synthetase 99.4 8.5E-13 2.9E-17 122.9 13.8 172 14-191 3-206 (228)
52 2woj_A ATPase GET3; tail-ancho 99.4 6.6E-13 2.3E-17 131.5 13.7 42 13-54 16-59 (354)
53 2p67_A LAO/AO transport system 99.4 3.5E-12 1.2E-16 125.6 15.7 240 8-260 49-314 (341)
54 1ihu_A Arsenical pump-driving 99.4 2.1E-12 7.3E-17 135.9 12.2 49 9-58 2-50 (589)
55 3fkq_A NTRC-like two-domain pr 99.3 9.1E-12 3.1E-16 124.0 15.0 148 8-164 136-322 (373)
56 3io3_A DEHA2D07832P; chaperone 99.3 3E-12 1E-16 126.5 11.3 44 12-55 15-60 (348)
57 1yrb_A ATP(GTP)binding protein 99.3 1.1E-12 3.7E-17 123.2 7.3 153 12-168 11-185 (262)
58 3qxc_A Dethiobiotin synthetase 99.3 5E-11 1.7E-15 111.8 15.6 151 14-168 20-203 (242)
59 3igf_A ALL4481 protein; two-do 99.2 8.4E-11 2.9E-15 117.0 14.8 40 15-55 2-41 (374)
60 1ihu_A Arsenical pump-driving 99.2 6.3E-11 2.2E-15 124.7 10.4 44 13-56 325-368 (589)
61 2www_A Methylmalonic aciduria 99.0 2.4E-09 8.2E-14 105.6 14.3 144 14-168 73-226 (349)
62 2wsm_A Hydrogenase expression/ 98.9 4.4E-09 1.5E-13 95.7 11.2 136 13-167 28-167 (221)
63 4a0g_A Adenosylmethionine-8-am 98.9 9.6E-09 3.3E-13 112.1 15.3 96 97-195 201-299 (831)
64 2qm8_A GTPase/ATPase; G protei 98.9 1.3E-08 4.6E-13 99.8 14.0 149 8-167 48-206 (337)
65 2rdo_7 EF-G, elongation factor 98.9 3.7E-08 1.3E-12 105.8 16.4 223 13-258 8-259 (704)
66 2r8r_A Sensor protein; KDPD, P 98.8 9.8E-09 3.3E-13 94.9 8.0 87 16-110 7-97 (228)
67 2xex_A Elongation factor G; GT 98.8 2.3E-07 7.9E-12 99.4 19.5 216 12-258 7-251 (693)
68 4fn5_A EF-G 1, elongation fact 98.7 1.7E-07 5.9E-12 100.7 16.8 225 14-259 12-263 (709)
69 1dar_A EF-G, elongation factor 98.7 1.9E-07 6.7E-12 99.9 16.4 215 13-258 10-253 (691)
70 3vqt_A RF-3, peptide chain rel 98.7 1.1E-08 3.7E-13 106.8 5.6 150 13-185 29-185 (548)
71 3j25_A Tetracycline resistance 98.7 6.3E-08 2.2E-12 102.8 10.6 202 15-258 2-210 (638)
72 2obn_A Hypothetical protein; s 98.6 1.5E-06 5.2E-11 85.2 16.7 157 14-184 151-331 (349)
73 2h5e_A Peptide chain release f 98.4 2.9E-07 9.9E-12 95.6 7.7 151 14-185 12-167 (529)
74 2hf9_A Probable hydrogenase ni 98.4 7.5E-07 2.6E-11 81.1 9.4 137 13-167 36-177 (226)
75 3k53_A Ferrous iron transport 98.4 2E-06 6.7E-11 81.3 12.5 136 15-186 3-144 (271)
76 3iby_A Ferrous iron transport 98.4 2.5E-06 8.5E-11 80.3 12.9 136 17-188 3-147 (256)
77 1xjc_A MOBB protein homolog; s 98.4 5.6E-07 1.9E-11 79.6 7.9 41 14-54 3-43 (169)
78 2dy1_A Elongation factor G; tr 98.4 5.2E-06 1.8E-10 88.5 16.0 211 13-258 7-245 (665)
79 3iev_A GTP-binding protein ERA 98.4 2.1E-06 7.1E-11 82.9 11.7 118 13-167 8-135 (308)
80 3i8s_A Ferrous iron transport 98.3 7.6E-06 2.6E-10 77.6 13.0 137 15-187 3-148 (274)
81 3tr5_A RF-3, peptide chain rel 98.3 5E-07 1.7E-11 93.8 4.9 151 14-185 12-167 (528)
82 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 5E-06 1.7E-10 78.1 10.2 40 14-53 3-42 (260)
83 3a1s_A Iron(II) transport prot 98.2 6.2E-06 2.1E-10 77.6 10.9 137 15-187 5-146 (258)
84 2cvh_A DNA repair and recombin 98.2 1.4E-05 4.7E-10 72.0 12.6 37 14-53 19-55 (220)
85 2e87_A Hypothetical protein PH 98.2 2.3E-05 7.7E-10 77.1 15.0 137 14-188 166-316 (357)
86 2dr3_A UPF0273 protein PH0284; 98.2 3.2E-05 1.1E-09 70.8 14.8 41 14-54 22-62 (247)
87 1xp8_A RECA protein, recombina 98.1 1.3E-05 4.6E-10 79.3 12.0 91 14-110 73-165 (366)
88 1wf3_A GTP-binding protein; GT 98.1 1.5E-05 5.3E-10 76.6 11.9 120 16-170 8-133 (301)
89 1ega_A Protein (GTP-binding pr 98.1 1.5E-05 5E-10 76.7 11.6 121 13-168 6-130 (301)
90 3hr8_A Protein RECA; alpha and 98.1 6.9E-06 2.4E-10 81.0 9.3 92 14-110 60-152 (356)
91 1u94_A RECA protein, recombina 98.1 7.2E-06 2.5E-10 80.9 9.1 91 14-110 62-154 (356)
92 3bh0_A DNAB-like replicative h 98.1 5.2E-05 1.8E-09 73.3 15.0 118 14-137 67-189 (315)
93 3lxw_A GTPase IMAP family memb 98.1 2E-05 7E-10 73.4 11.3 138 13-184 19-179 (247)
94 2qu8_A Putative nucleolar GTP- 98.1 0.00048 1.6E-08 62.6 20.1 116 14-167 28-155 (228)
95 2wji_A Ferrous iron transport 98.1 1.8E-05 6.1E-10 68.3 9.7 89 96-184 48-141 (165)
96 2w0m_A SSO2452; RECA, SSPF, un 98.0 3E-05 1E-09 70.1 11.4 41 14-54 22-62 (235)
97 2wjg_A FEOB, ferrous iron tran 98.0 3.1E-05 1.1E-09 67.7 11.1 136 14-185 6-146 (188)
98 3b1v_A Ferrous iron uptake tra 98.0 1.8E-05 6.3E-10 75.0 10.2 136 15-187 3-143 (272)
99 2xtp_A GTPase IMAP family memb 98.0 1.5E-05 5E-10 74.4 9.0 23 14-36 21-43 (260)
100 2ged_A SR-beta, signal recogni 98.0 2.7E-05 9.2E-10 68.5 10.1 70 96-167 89-169 (193)
101 2ce2_X GTPase HRAS; signaling 98.0 6.8E-05 2.3E-09 63.3 12.1 85 96-186 49-143 (166)
102 2c78_A Elongation factor TU-A; 98.0 3.4E-05 1.2E-09 77.1 11.8 130 14-168 10-142 (405)
103 2zr9_A Protein RECA, recombina 98.0 3.5E-05 1.2E-09 75.8 11.5 91 14-110 60-152 (349)
104 3t34_A Dynamin-related protein 98.0 5.5E-05 1.9E-09 74.3 13.0 74 97-170 135-219 (360)
105 3lxx_A GTPase IMAP family memb 98.0 5.1E-05 1.7E-09 69.8 11.9 137 14-184 28-185 (239)
106 3bgw_A DNAB-like replicative h 98.0 9.1E-05 3.1E-09 75.1 14.8 118 14-137 196-318 (444)
107 1g16_A RAS-related protein SEC 98.0 4.9E-05 1.7E-09 64.8 10.7 83 97-185 51-142 (170)
108 3ec2_A DNA replication protein 97.9 3.8E-05 1.3E-09 67.4 9.6 39 14-52 37-76 (180)
109 1jwy_B Dynamin A GTPase domain 97.9 7.5E-05 2.6E-09 71.4 11.8 72 97-170 130-214 (315)
110 2dyk_A GTP-binding protein; GT 97.9 7.3E-05 2.5E-09 63.2 10.3 72 96-169 47-123 (161)
111 4dhe_A Probable GTP-binding pr 97.9 6.1E-05 2.1E-09 67.9 10.2 74 96-169 77-159 (223)
112 4a1f_A DNAB helicase, replicat 97.9 9.2E-05 3.2E-09 72.4 11.8 146 14-166 45-207 (338)
113 1cr0_A DNA primase/helicase; R 97.9 0.00027 9.2E-09 67.1 14.8 41 13-53 33-74 (296)
114 3j2k_7 ERF3, eukaryotic polype 97.8 2.4E-05 8.1E-10 79.3 7.8 66 96-167 93-168 (439)
115 2elf_A Protein translation elo 97.8 6.1E-05 2.1E-09 74.6 10.6 111 5-166 11-125 (370)
116 3cb4_D GTP-binding protein LEP 97.8 5.4E-05 1.8E-09 79.6 10.7 80 97-183 70-154 (599)
117 1d2e_A Elongation factor TU (E 97.8 6.9E-05 2.4E-09 74.8 11.0 126 16-168 4-133 (397)
118 1h65_A Chloroplast outer envel 97.8 0.00037 1.3E-08 65.4 15.3 120 14-168 38-168 (270)
119 2ywe_A GTP-binding protein LEP 97.8 0.0001 3.4E-09 77.5 12.4 143 14-182 5-155 (600)
120 1svi_A GTP-binding protein YSX 97.8 0.00031 1E-08 61.6 13.9 23 14-36 22-44 (195)
121 3tkl_A RAS-related protein RAB 97.8 8.6E-05 2.9E-09 65.2 10.2 84 97-186 64-157 (196)
122 3con_A GTPase NRAS; structural 97.8 4.8E-05 1.6E-09 66.7 8.5 84 96-185 67-160 (190)
123 3tw8_B RAS-related protein RAB 97.8 6.1E-05 2.1E-09 65.0 9.0 84 97-186 57-149 (181)
124 1v5w_A DMC1, meiotic recombina 97.8 0.00014 4.8E-09 71.1 12.5 94 14-110 121-232 (343)
125 2p5s_A RAS and EF-hand domain 97.8 0.00018 6.3E-09 63.7 12.2 24 13-36 26-49 (199)
126 3clv_A RAB5 protein, putative; 97.8 0.00028 9.7E-09 61.7 13.3 81 98-184 93-180 (208)
127 1z0f_A RAB14, member RAS oncog 97.8 8.2E-05 2.8E-09 64.0 9.5 83 96-184 62-154 (179)
128 3io5_A Recombination and repai 97.8 6.6E-05 2.3E-09 72.7 9.6 87 16-110 29-124 (333)
129 2q6t_A DNAB replication FORK h 97.8 0.00033 1.1E-08 70.8 15.4 41 14-54 199-240 (444)
130 2hxs_A RAB-26, RAS-related pro 97.8 0.00017 5.8E-09 62.1 11.4 83 97-185 55-150 (178)
131 3t1o_A Gliding protein MGLA; G 97.8 0.0001 3.5E-09 64.4 10.1 67 96-168 72-149 (198)
132 2z43_A DNA repair and recombin 97.8 6.7E-05 2.3E-09 72.7 9.5 92 14-109 106-215 (324)
133 2r6a_A DNAB helicase, replicat 97.8 0.00032 1.1E-08 71.1 14.9 41 14-54 202-243 (454)
134 1q57_A DNA primase/helicase; d 97.8 0.00031 1.1E-08 72.1 14.9 41 14-54 241-282 (503)
135 3cph_A RAS-related protein SEC 97.8 6.9E-05 2.4E-09 66.8 8.8 83 97-185 68-159 (213)
136 4dcu_A GTP-binding protein ENG 97.8 5.9E-05 2E-09 76.6 9.2 118 15-167 23-144 (456)
137 2b8t_A Thymidine kinase; deoxy 97.8 6.7E-05 2.3E-09 69.1 8.6 101 13-124 10-114 (223)
138 1n0w_A DNA repair protein RAD5 97.7 0.00016 5.5E-09 66.0 11.0 91 14-110 23-132 (243)
139 1np6_A Molybdopterin-guanine d 97.7 6E-05 2E-09 66.7 7.7 40 15-54 6-45 (174)
140 1z2a_A RAS-related protein RAB 97.7 5.3E-05 1.8E-09 64.5 7.2 82 97-185 53-144 (168)
141 1u8z_A RAS-related protein RAL 97.7 0.00032 1.1E-08 59.3 12.1 82 96-184 50-143 (168)
142 3izq_1 HBS1P, elongation facto 97.7 0.00014 4.9E-09 76.6 11.8 67 96-168 243-319 (611)
143 2efe_B Small GTP-binding prote 97.7 9.8E-05 3.4E-09 63.8 8.9 82 97-184 60-151 (181)
144 3pqc_A Probable GTP-binding pr 97.7 0.00031 1.1E-08 61.2 12.3 21 16-36 24-44 (195)
145 2yvu_A Probable adenylyl-sulfa 97.7 3.7E-05 1.3E-09 67.9 6.2 42 12-53 10-51 (186)
146 2g0t_A Conserved hypothetical 97.7 0.00022 7.4E-09 70.0 12.1 140 14-163 168-323 (350)
147 2a9k_A RAS-related protein RAL 97.7 0.00011 3.6E-09 63.8 8.9 81 97-184 65-157 (187)
148 2g6b_A RAS-related protein RAB 97.7 0.00011 3.9E-09 63.4 9.1 83 97-185 59-151 (180)
149 1f60_A Elongation factor EEF1A 97.7 9.1E-05 3.1E-09 75.4 9.7 66 96-167 83-158 (458)
150 1nrj_B SR-beta, signal recogni 97.7 0.00017 5.9E-09 64.7 10.5 23 14-36 11-33 (218)
151 3bos_A Putative DNA replicatio 97.7 0.00013 4.3E-09 66.1 9.6 39 14-52 51-89 (242)
152 2a5j_A RAS-related protein RAB 97.7 0.00016 5.3E-09 63.7 9.9 82 97-184 69-160 (191)
153 2bcg_Y Protein YP2, GTP-bindin 97.7 6E-05 2.1E-09 67.1 7.3 83 97-185 56-148 (206)
154 3p26_A Elongation factor 1 alp 97.7 0.00017 5.7E-09 73.9 11.4 67 96-168 109-185 (483)
155 3bc1_A RAS-related protein RAB 97.7 0.00015 5E-09 63.2 9.5 83 97-185 69-162 (195)
156 2aka_B Dynamin-1; fusion prote 97.7 0.00018 6.1E-09 68.0 10.8 21 16-36 27-47 (299)
157 1jny_A EF-1-alpha, elongation 97.7 3.6E-05 1.2E-09 77.8 6.2 26 13-38 4-29 (435)
158 3q85_A GTP-binding protein REM 97.7 0.00038 1.3E-08 59.3 11.7 84 96-184 49-143 (169)
159 2hup_A RAS-related protein RAB 97.7 0.00023 7.9E-09 63.4 10.7 82 97-184 77-169 (201)
160 2bov_A RAla, RAS-related prote 97.7 0.00024 8.2E-09 62.8 10.7 82 97-185 61-154 (206)
161 1x3s_A RAS-related protein RAB 97.7 4.5E-05 1.5E-09 66.9 5.8 83 96-184 62-154 (195)
162 1nlf_A Regulatory protein REPA 97.7 0.00056 1.9E-08 64.4 13.6 40 14-53 29-78 (279)
163 2lkc_A Translation initiation 97.7 5.6E-05 1.9E-09 65.2 6.1 67 96-168 53-121 (178)
164 1z0j_A RAB-22, RAS-related pro 97.7 0.00019 6.5E-09 61.1 9.4 83 96-184 53-145 (170)
165 1g5t_A COB(I)alamin adenosyltr 97.7 0.00037 1.3E-08 62.8 11.5 90 14-108 28-131 (196)
166 2zts_A Putative uncharacterize 97.7 0.00078 2.7E-08 61.5 14.1 41 14-54 29-70 (251)
167 4dsu_A GTPase KRAS, isoform 2B 97.7 0.00031 1.1E-08 60.9 10.9 83 97-185 51-143 (189)
168 1zun_B Sulfate adenylate trans 97.7 0.00055 1.9E-08 69.0 14.2 67 96-168 102-171 (434)
169 2hjg_A GTP-binding protein ENG 97.6 0.00011 3.7E-09 74.3 8.8 117 17-168 5-125 (436)
170 1zbd_A Rabphilin-3A; G protein 97.6 0.00023 7.8E-09 63.1 10.0 83 96-184 55-147 (203)
171 2axn_A 6-phosphofructo-2-kinas 97.6 0.00066 2.2E-08 70.2 14.7 41 13-53 33-73 (520)
172 2erx_A GTP-binding protein DI- 97.6 0.00016 5.5E-09 61.6 8.6 82 96-184 49-143 (172)
173 2gf9_A RAS-related protein RAB 97.6 0.00015 5.2E-09 63.5 8.6 83 96-184 69-161 (189)
174 2yc2_C IFT27, small RAB-relate 97.6 0.00031 1E-08 62.1 10.6 82 97-184 72-167 (208)
175 2hjg_A GTP-binding protein ENG 97.6 0.00026 8.7E-09 71.5 11.2 120 14-168 174-300 (436)
176 2fg5_A RAB-22B, RAS-related pr 97.6 0.00014 4.9E-09 64.0 8.3 83 96-184 70-162 (192)
177 4bas_A ADP-ribosylation factor 97.6 0.0002 6.7E-09 63.0 9.1 114 13-169 15-142 (199)
178 2nzj_A GTP-binding protein REM 97.6 0.00059 2E-08 58.3 11.9 83 97-184 51-145 (175)
179 3def_A T7I23.11 protein; chlor 97.6 0.00021 7.1E-09 66.9 9.7 23 14-36 35-57 (262)
180 1kao_A RAP2A; GTP-binding prot 97.6 0.00043 1.5E-08 58.4 10.9 84 97-186 50-144 (167)
181 1fnn_A CDC6P, cell division co 97.6 0.0028 9.5E-08 61.7 18.2 102 17-123 46-149 (389)
182 1mky_A Probable GTP-binding pr 97.6 0.00037 1.3E-08 70.3 12.2 114 17-167 3-123 (439)
183 1ek0_A Protein (GTP-binding pr 97.6 0.00025 8.6E-09 60.2 9.4 83 96-184 50-145 (170)
184 3lda_A DNA repair protein RAD5 97.6 0.00033 1.1E-08 70.1 11.4 94 14-110 177-286 (400)
185 2il1_A RAB12; G-protein, GDP, 97.6 0.00014 4.7E-09 64.3 7.7 65 97-167 74-144 (192)
186 2o52_A RAS-related protein RAB 97.6 0.00018 6.2E-09 64.0 8.6 82 97-184 73-164 (200)
187 1xx6_A Thymidine kinase; NESG, 97.6 0.00024 8.4E-09 63.7 9.4 95 13-122 6-104 (191)
188 1ky3_A GTP-binding protein YPT 97.6 0.00022 7.6E-09 61.4 8.9 23 14-36 7-29 (182)
189 2p5t_B PEZT; postsegregational 97.6 0.00021 7E-09 66.6 9.2 43 12-57 29-71 (253)
190 2fu5_C RAS-related protein RAB 97.6 0.00017 5.8E-09 62.6 8.1 82 97-184 56-147 (183)
191 2gf0_A GTP-binding protein DI- 97.6 0.00034 1.2E-08 61.4 10.1 82 96-184 54-147 (199)
192 3kkq_A RAS-related protein M-R 97.6 0.00062 2.1E-08 59.0 11.6 85 97-187 65-160 (183)
193 2i1q_A DNA repair and recombin 97.6 0.00018 6.2E-09 69.4 8.8 92 14-109 97-216 (322)
194 2y8e_A RAB-protein 6, GH09086P 97.6 0.00029 1E-08 60.4 9.2 83 97-185 62-154 (179)
195 1z08_A RAS-related protein RAB 97.5 0.00017 5.9E-09 61.5 7.5 83 96-184 53-145 (170)
196 2ehv_A Hypothetical protein PH 97.5 0.00023 7.7E-09 65.2 8.7 41 14-54 29-70 (251)
197 2x2e_A Dynamin-1; nitration, h 97.5 0.00025 8.4E-09 69.5 9.5 20 17-36 33-52 (353)
198 1r2q_A RAS-related protein RAB 97.5 0.00027 9.2E-09 60.0 8.6 83 96-184 53-145 (170)
199 3lv8_A DTMP kinase, thymidylat 97.5 0.00023 7.9E-09 66.1 8.6 47 8-54 20-66 (236)
200 2oil_A CATX-8, RAS-related pro 97.5 0.0002 6.8E-09 62.9 7.8 83 96-184 72-164 (193)
201 3sjy_A Translation initiation 97.5 0.00033 1.1E-08 69.9 10.3 66 98-169 75-144 (403)
202 3mca_A HBS1, elongation factor 97.5 3.3E-05 1.1E-09 81.2 3.1 26 14-39 176-201 (592)
203 3dz8_A RAS-related protein RAB 97.5 0.00037 1.3E-08 61.2 9.5 83 96-184 70-162 (191)
204 3gee_A MNME, tRNA modification 97.5 0.00031 1.1E-08 71.8 10.2 117 16-170 234-359 (476)
205 1nks_A Adenylate kinase; therm 97.5 9E-05 3.1E-09 65.0 5.4 37 16-52 2-38 (194)
206 1zj6_A ADP-ribosylation factor 97.5 0.0014 4.7E-08 57.2 13.1 111 13-168 14-131 (187)
207 1r8s_A ADP-ribosylation factor 97.5 0.00027 9.3E-09 59.9 8.3 67 96-168 42-115 (164)
208 2f7s_A C25KG, RAS-related prot 97.5 0.00059 2E-08 61.1 10.9 84 97-186 83-177 (217)
209 2fn4_A P23, RAS-related protei 97.5 0.00077 2.6E-08 57.8 11.3 82 97-184 56-148 (181)
210 2qby_A CDC6 homolog 1, cell di 97.5 0.004 1.4E-07 60.2 17.5 95 12-109 42-140 (386)
211 1zd9_A ADP-ribosylation factor 97.5 0.00019 6.7E-09 63.0 7.2 67 96-168 65-138 (188)
212 1upt_A ARL1, ADP-ribosylation 97.5 0.00016 5.6E-09 61.7 6.6 68 96-169 49-123 (171)
213 4a74_A DNA repair and recombin 97.5 0.00073 2.5E-08 60.9 11.2 40 14-53 24-69 (231)
214 2h17_A ADP-ribosylation factor 97.5 0.00046 1.6E-08 60.0 9.5 110 14-168 20-136 (181)
215 4dcu_A GTP-binding protein ENG 97.5 0.00077 2.6E-08 68.3 12.5 119 14-167 194-319 (456)
216 2i3b_A HCR-ntpase, human cance 97.5 2.1E-05 7.2E-10 70.6 0.7 27 17-43 3-29 (189)
217 3t61_A Gluconokinase; PSI-biol 97.5 0.00076 2.6E-08 60.1 11.1 38 14-56 17-54 (202)
218 1z06_A RAS-related protein RAB 97.5 0.0003 1E-08 61.6 8.2 84 97-185 68-162 (189)
219 1wms_A RAB-9, RAB9, RAS-relate 97.5 0.00041 1.4E-08 59.6 9.0 21 16-36 8-28 (177)
220 2b6h_A ADP-ribosylation factor 97.5 0.00037 1.3E-08 61.6 8.7 112 13-169 27-145 (192)
221 2qpt_A EH domain-containing pr 97.5 0.00032 1.1E-08 73.0 9.6 70 98-169 154-233 (550)
222 1c1y_A RAS-related protein RAP 97.5 0.0006 2E-08 57.7 9.8 66 96-167 49-121 (167)
223 2h57_A ADP-ribosylation factor 97.5 0.00027 9.3E-09 61.9 7.8 67 96-168 65-140 (190)
224 2bme_A RAB4A, RAS-related prot 97.5 0.00028 9.6E-09 61.3 7.8 82 97-184 58-149 (186)
225 1vg8_A RAS-related protein RAB 97.4 0.0002 6.8E-09 63.5 6.7 23 14-36 7-29 (207)
226 2ew1_A RAS-related protein RAB 97.4 0.00029 9.8E-09 63.1 7.8 82 97-184 74-165 (201)
227 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00045 1.5E-08 67.0 9.6 73 15-110 123-195 (331)
228 3q72_A GTP-binding protein RAD 97.4 0.00058 2E-08 58.0 9.4 83 96-184 47-140 (166)
229 3cpj_B GTP-binding protein YPT 97.4 0.00025 8.7E-09 64.1 7.3 82 97-184 61-152 (223)
230 2fv8_A H6, RHO-related GTP-bin 97.4 0.00033 1.1E-08 62.6 7.9 66 97-169 72-144 (207)
231 1moz_A ARL1, ADP-ribosylation 97.4 0.00019 6.4E-09 62.2 6.0 111 13-168 16-133 (183)
232 1fzq_A ADP-ribosylation factor 97.4 0.00079 2.7E-08 58.7 10.1 112 13-169 14-132 (181)
233 3oes_A GTPase rhebl1; small GT 97.4 0.00047 1.6E-08 61.1 8.7 83 96-184 70-163 (201)
234 1qf9_A UMP/CMP kinase, protein 97.4 0.0015 5E-08 57.1 11.9 35 13-52 4-38 (194)
235 3uie_A Adenylyl-sulfate kinase 97.4 0.00017 5.8E-09 64.5 5.6 43 12-54 22-64 (200)
236 1kht_A Adenylate kinase; phosp 97.4 0.00013 4.5E-09 63.9 4.8 38 15-52 3-40 (192)
237 3t5g_A GTP-binding protein RHE 97.4 0.00023 8E-09 61.6 6.3 82 97-184 53-145 (181)
238 1gvn_B Zeta; postsegregational 97.4 0.00037 1.3E-08 66.4 8.1 41 12-55 30-70 (287)
239 1f6b_A SAR1; gtpases, N-termin 97.4 0.00037 1.3E-08 61.9 7.6 67 96-168 67-140 (198)
240 2fh5_B SR-beta, signal recogni 97.4 0.00068 2.3E-08 60.5 9.4 67 97-168 53-129 (214)
241 3reg_A RHO-like small GTPase; 97.4 0.00037 1.3E-08 61.3 7.5 82 96-183 69-162 (194)
242 1rz3_A Hypothetical protein rb 97.4 0.00024 8.1E-09 63.7 6.3 44 12-55 19-62 (201)
243 1m2o_B GTP-binding protein SAR 97.4 0.00046 1.6E-08 60.8 8.1 67 96-168 65-138 (190)
244 3bwd_D RAC-like GTP-binding pr 97.4 0.00029 9.8E-09 60.9 6.5 65 96-167 54-125 (182)
245 1r5b_A Eukaryotic peptide chai 97.4 0.00019 6.6E-09 73.1 6.2 66 96-167 119-194 (467)
246 1n0u_A EF-2, elongation factor 97.3 0.00034 1.2E-08 76.4 8.5 64 96-167 96-163 (842)
247 2pez_A Bifunctional 3'-phospho 97.3 0.00023 7.9E-09 62.3 5.8 40 14-53 4-43 (179)
248 2j69_A Bacterial dynamin-like 97.3 0.00011 3.7E-09 78.7 4.3 33 14-52 68-100 (695)
249 2gj8_A MNME, tRNA modification 97.3 0.00078 2.7E-08 58.4 9.1 22 15-36 4-25 (172)
250 1wb1_A Translation elongation 97.3 0.00045 1.5E-08 70.7 8.7 66 96-168 71-139 (482)
251 3dpu_A RAB family protein; roc 97.3 0.0016 5.6E-08 67.2 12.9 86 96-188 96-188 (535)
252 2kjq_A DNAA-related protein; s 97.3 0.00049 1.7E-08 59.0 7.5 39 14-52 35-73 (149)
253 1lnz_A SPO0B-associated GTP-bi 97.3 0.00022 7.7E-09 69.8 6.0 82 98-181 206-301 (342)
254 2cxx_A Probable GTP-binding pr 97.3 0.0065 2.2E-07 52.5 14.9 19 18-36 4-22 (190)
255 1ukz_A Uridylate kinase; trans 97.3 0.0036 1.2E-07 55.5 13.4 38 10-52 10-47 (203)
256 3l0i_B RAS-related protein RAB 97.3 2.4E-05 8.1E-10 69.6 -1.2 65 97-167 81-151 (199)
257 1ksh_A ARF-like protein 2; sma 97.3 0.00068 2.3E-08 58.9 8.3 111 13-168 16-133 (186)
258 3avx_A Elongation factor TS, e 97.3 0.001 3.5E-08 74.3 11.5 127 14-168 295-426 (1289)
259 3t5d_A Septin-7; GTP-binding p 97.3 0.0015 5.3E-08 61.3 11.4 21 16-36 9-29 (274)
260 1uj2_A Uridine-cytidine kinase 97.3 0.00018 6.3E-09 66.8 4.8 44 12-55 19-67 (252)
261 1a7j_A Phosphoribulokinase; tr 97.3 0.0001 3.5E-09 70.4 3.0 42 14-55 4-45 (290)
262 2atv_A RERG, RAS-like estrogen 97.3 0.0034 1.2E-07 55.1 12.8 82 96-184 74-166 (196)
263 2j1l_A RHO-related GTP-binding 97.3 0.0006 2E-08 61.3 7.9 67 96-169 80-153 (214)
264 3zvl_A Bifunctional polynucleo 97.3 0.0017 5.7E-08 65.1 11.9 40 10-54 253-292 (416)
265 4a9a_A Ribosome-interacting GT 97.3 0.00041 1.4E-08 68.8 7.2 122 7-166 64-194 (376)
266 1tf7_A KAIC; homohexamer, hexa 97.2 0.0013 4.4E-08 68.0 11.0 87 14-104 280-378 (525)
267 1pzn_A RAD51, DNA repair and r 97.2 0.0021 7.1E-08 63.0 12.0 40 14-53 130-175 (349)
268 2x77_A ADP-ribosylation factor 97.2 0.00032 1.1E-08 61.3 5.6 112 13-169 20-138 (189)
269 1m7g_A Adenylylsulfate kinase; 97.2 0.00024 8.3E-09 64.0 4.9 43 12-54 22-65 (211)
270 2qtf_A Protein HFLX, GTP-bindi 97.2 0.0021 7.2E-08 63.4 12.0 118 15-168 179-306 (364)
271 2q3h_A RAS homolog gene family 97.2 0.001 3.5E-08 58.6 8.9 65 97-168 67-138 (201)
272 1nij_A Hypothetical protein YJ 97.2 0.0094 3.2E-07 57.4 16.3 171 14-190 3-188 (318)
273 3cbq_A GTP-binding protein REM 97.2 0.0018 6.1E-08 57.4 10.3 83 97-184 71-164 (195)
274 3qq5_A Small GTP-binding prote 97.2 0.00014 4.9E-09 73.2 3.4 85 99-185 84-173 (423)
275 3cmu_A Protein RECA, recombina 97.2 0.001 3.5E-08 78.0 10.8 87 14-107 1426-1515(2050)
276 2j9r_A Thymidine kinase; TK1, 97.2 0.00058 2E-08 62.4 7.0 39 13-51 26-64 (214)
277 1s1m_A CTP synthase; CTP synth 97.2 0.0036 1.2E-07 64.7 13.8 118 15-134 3-172 (545)
278 1kk1_A EIF2gamma; initiation o 97.2 0.00086 2.9E-08 67.0 9.0 64 98-168 83-151 (410)
279 1vco_A CTP synthetase; tetrame 97.2 0.0036 1.2E-07 64.8 13.7 119 15-134 12-183 (550)
280 4eaq_A DTMP kinase, thymidylat 97.2 0.011 3.9E-07 54.0 15.8 42 7-49 17-59 (229)
281 3cmw_A Protein RECA, recombina 97.2 0.00092 3.1E-08 77.5 9.9 152 14-182 1430-1595(1706)
282 3zvr_A Dynamin-1; hydrolase, D 97.2 0.00064 2.2E-08 73.1 8.0 74 97-171 149-234 (772)
283 1nn5_A Similar to deoxythymidy 97.2 0.00044 1.5E-08 61.8 5.8 38 13-50 7-44 (215)
284 3e1s_A Exodeoxyribonuclease V, 97.2 0.0016 5.4E-08 68.1 10.7 36 15-50 204-239 (574)
285 4eun_A Thermoresistant glucoki 97.2 0.0046 1.6E-07 55.0 12.4 38 13-55 27-64 (200)
286 3geh_A MNME, tRNA modification 97.1 0.00048 1.6E-08 70.2 6.4 70 96-168 270-344 (462)
287 2atx_A Small GTP binding prote 97.1 0.0016 5.4E-08 57.0 9.0 65 97-168 65-136 (194)
288 1g7s_A Translation initiation 97.1 0.0011 3.7E-08 69.6 9.2 62 98-167 70-135 (594)
289 1mky_A Probable GTP-binding pr 97.1 0.0023 7.8E-08 64.5 11.1 23 14-36 179-201 (439)
290 4djt_A GTP-binding nuclear pro 97.1 0.00066 2.3E-08 60.8 6.1 65 98-168 61-131 (218)
291 3gj0_A GTP-binding nuclear pro 97.1 0.00064 2.2E-08 61.2 5.9 82 96-184 62-151 (221)
292 3cmu_A Protein RECA, recombina 97.1 0.0017 5.7E-08 76.3 10.6 89 14-110 382-474 (2050)
293 3llu_A RAS-related GTP-binding 97.1 0.0014 4.9E-08 57.7 8.0 69 96-168 67-143 (196)
294 1l8q_A Chromosomal replication 97.1 0.00089 3E-08 64.3 7.1 39 14-52 36-74 (324)
295 3c8u_A Fructokinase; YP_612366 97.0 0.00069 2.4E-08 60.9 5.9 42 13-54 20-61 (208)
296 1zo1_I IF2, translation initia 97.0 0.00061 2.1E-08 70.0 6.2 109 14-167 3-116 (501)
297 2z0h_A DTMP kinase, thymidylat 97.0 0.00068 2.3E-08 59.7 5.7 34 17-50 2-35 (197)
298 1c9k_A COBU, adenosylcobinamid 97.0 0.00046 1.6E-08 61.4 4.5 32 17-52 1-32 (180)
299 3cmw_A Protein RECA, recombina 97.0 0.0014 4.8E-08 76.0 9.5 89 14-110 382-474 (1706)
300 1m7b_A RND3/RHOE small GTP-bin 97.0 0.0013 4.6E-08 57.2 7.5 67 96-168 53-125 (184)
301 1odf_A YGR205W, hypothetical 3 97.0 0.00044 1.5E-08 66.1 4.5 43 12-54 28-73 (290)
302 3tqc_A Pantothenate kinase; bi 97.0 0.00071 2.4E-08 65.6 6.0 44 12-55 89-134 (321)
303 2plr_A DTMP kinase, probable t 97.0 0.00069 2.3E-08 60.3 5.5 35 14-49 3-37 (213)
304 3vaa_A Shikimate kinase, SK; s 97.0 0.00039 1.3E-08 62.1 3.8 41 7-52 17-57 (199)
305 2w58_A DNAI, primosome compone 97.0 0.00066 2.3E-08 60.3 5.3 38 15-52 54-91 (202)
306 1s0u_A EIF-2-gamma, translatio 97.0 0.0014 4.9E-08 65.4 8.3 64 98-168 81-149 (408)
307 2pbr_A DTMP kinase, thymidylat 97.0 0.00078 2.7E-08 59.0 5.7 34 17-50 2-35 (195)
308 2gco_A H9, RHO-related GTP-bin 97.0 0.0015 5.2E-08 57.8 7.7 66 97-169 72-144 (201)
309 1qhx_A CPT, protein (chloramph 97.0 0.00049 1.7E-08 59.8 4.2 35 15-52 3-37 (178)
310 3o47_A ADP-ribosylation factor 97.0 0.00074 2.5E-08 65.5 5.9 67 96-168 207-280 (329)
311 2wwf_A Thymidilate kinase, put 97.0 0.00089 3E-08 59.7 5.9 37 14-50 9-45 (212)
312 3c5c_A RAS-like protein 12; GD 97.0 0.0034 1.2E-07 54.9 9.6 81 96-184 67-161 (187)
313 1jr3_A DNA polymerase III subu 97.0 0.036 1.2E-06 53.5 17.9 28 14-41 37-64 (373)
314 1x6v_B Bifunctional 3'-phospho 97.0 0.00061 2.1E-08 71.8 5.3 42 14-55 51-92 (630)
315 2j0v_A RAC-like GTP-binding pr 96.9 0.0012 3.9E-08 58.9 6.4 65 96-167 55-126 (212)
316 2v1u_A Cell division control p 96.9 0.0046 1.6E-07 59.9 11.3 96 12-110 41-143 (387)
317 2iwr_A Centaurin gamma 1; ANK 96.9 0.016 5.3E-07 49.6 13.4 23 14-36 6-28 (178)
318 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0092 3.1E-07 54.8 12.7 74 13-109 37-110 (262)
319 2qby_B CDC6 homolog 3, cell di 96.9 0.0021 7.1E-08 62.6 8.6 41 12-52 42-90 (384)
320 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00065 2.2E-08 58.7 4.4 66 96-168 51-123 (186)
321 4gzl_A RAS-related C3 botulinu 96.9 0.00063 2.2E-08 60.7 4.4 67 96-168 76-148 (204)
322 3asz_A Uridine kinase; cytidin 96.9 0.00093 3.2E-08 59.8 5.5 39 13-54 4-42 (211)
323 1ly1_A Polynucleotide kinase; 96.9 0.00081 2.8E-08 58.2 4.9 35 15-53 2-36 (181)
324 1gwn_A RHO-related GTP-binding 96.9 0.0013 4.5E-08 58.8 6.5 66 96-167 74-145 (205)
325 2qt1_A Nicotinamide riboside k 96.9 0.0011 3.8E-08 59.3 5.6 44 7-54 13-56 (207)
326 2rhm_A Putative kinase; P-loop 96.9 0.00097 3.3E-08 58.5 5.1 35 14-53 4-38 (193)
327 3ihw_A Centg3; RAS, centaurin, 96.9 0.0079 2.7E-07 52.5 11.1 76 97-184 66-156 (184)
328 3izy_P Translation initiation 96.9 0.0004 1.4E-08 72.0 2.9 64 97-167 51-117 (537)
329 1y63_A LMAJ004144AAA protein; 96.9 0.00078 2.7E-08 59.4 4.4 40 9-52 4-43 (184)
330 3q3j_B RHO-related GTP-binding 96.9 0.0014 4.8E-08 59.0 6.1 65 96-167 73-144 (214)
331 3syl_A Protein CBBX; photosynt 96.8 0.015 5E-07 54.9 13.6 39 13-51 65-107 (309)
332 2orw_A Thymidine kinase; TMTK, 96.8 0.0012 4.3E-08 58.5 5.4 37 15-51 3-39 (184)
333 3lvq_E ARF-GAP with SH3 domain 96.8 0.003 1E-07 64.5 8.9 81 96-183 364-451 (497)
334 3r7w_A Gtpase1, GTP-binding pr 96.8 0.003 1E-07 60.5 8.4 71 96-168 50-129 (307)
335 2chg_A Replication factor C sm 96.8 0.0034 1.1E-07 55.4 7.9 30 17-46 40-69 (226)
336 1m8p_A Sulfate adenylyltransfe 96.8 0.0011 3.8E-08 69.2 5.4 42 12-53 393-435 (573)
337 2v54_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 59.5 3.9 36 14-51 3-38 (204)
338 1gtv_A TMK, thymidylate kinase 96.8 0.00036 1.2E-08 62.4 1.5 35 17-51 2-36 (214)
339 3trf_A Shikimate kinase, SK; a 96.7 0.00081 2.8E-08 58.8 3.6 33 15-52 5-37 (185)
340 2orv_A Thymidine kinase; TP4A 96.7 0.0041 1.4E-07 57.4 8.5 83 13-110 17-103 (234)
341 3te6_A Regulatory protein SIR3 96.7 0.016 5.5E-07 56.0 12.9 104 12-122 42-156 (318)
342 4edh_A DTMP kinase, thymidylat 96.7 0.0019 6.4E-08 58.8 6.0 37 14-50 5-41 (213)
343 1wxq_A GTP-binding protein; st 96.7 0.0049 1.7E-07 61.4 9.5 19 18-36 3-21 (397)
344 2jeo_A Uridine-cytidine kinase 96.7 0.0016 5.3E-08 60.2 5.5 48 7-54 17-69 (245)
345 1knq_A Gluconate kinase; ALFA/ 96.7 0.0018 6.3E-08 56.0 5.6 38 13-55 6-43 (175)
346 2f1r_A Molybdopterin-guanine d 96.7 0.00098 3.4E-08 58.6 3.8 39 16-54 3-41 (171)
347 4b4t_J 26S protease regulatory 96.7 0.026 8.9E-07 56.2 14.4 69 13-105 180-249 (405)
348 2gks_A Bifunctional SAT/APS ki 96.7 0.0014 4.8E-08 68.1 5.4 41 13-53 370-410 (546)
349 1sq5_A Pantothenate kinase; P- 96.7 0.0019 6.5E-08 62.0 5.9 42 13-54 78-121 (308)
350 1jbk_A CLPB protein; beta barr 96.7 0.002 6.8E-08 55.5 5.5 39 13-51 41-86 (195)
351 4i1u_A Dephospho-COA kinase; s 96.6 0.0093 3.2E-07 54.2 9.9 34 14-53 8-41 (210)
352 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.8E-08 57.3 4.3 34 14-52 2-35 (196)
353 3pzx_A Formate--tetrahydrofola 96.6 0.0027 9.2E-08 64.3 6.7 45 13-60 55-103 (557)
354 3ld9_A DTMP kinase, thymidylat 96.6 0.003 1E-07 57.9 6.7 44 12-55 18-62 (223)
355 1xzp_A Probable tRNA modificat 96.6 0.0049 1.7E-07 63.0 8.9 113 16-168 244-364 (482)
356 3umf_A Adenylate kinase; rossm 96.6 0.0016 5.5E-08 59.5 4.6 27 13-39 27-53 (217)
357 3h4m_A Proteasome-activating n 96.6 0.0048 1.7E-07 57.7 8.0 73 13-108 49-121 (285)
358 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.4E-08 56.4 3.6 34 16-54 2-35 (173)
359 2bwj_A Adenylate kinase 5; pho 96.6 0.0012 4.3E-08 58.1 3.6 34 14-52 11-44 (199)
360 3th5_A RAS-related C3 botulinu 95.6 0.00036 1.2E-08 62.0 0.0 23 14-36 29-51 (204)
361 1udx_A The GTP-binding protein 96.6 0.0069 2.4E-07 60.7 9.4 29 8-36 150-178 (416)
362 1uf9_A TT1252 protein; P-loop, 96.5 0.0013 4.4E-08 58.2 3.5 35 13-53 6-40 (203)
363 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.3E-08 57.3 3.9 34 14-52 8-41 (196)
364 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.006 2.1E-07 58.8 8.4 75 13-109 43-117 (322)
365 4gp7_A Metallophosphoesterase; 96.5 0.0022 7.4E-08 55.9 4.8 27 9-35 3-29 (171)
366 3jvv_A Twitching mobility prot 96.5 0.023 7.8E-07 55.7 12.4 109 14-140 122-233 (356)
367 2cdn_A Adenylate kinase; phosp 96.5 0.002 6.9E-08 57.3 4.3 36 12-52 17-52 (201)
368 1zp6_A Hypothetical protein AT 96.5 0.0021 7.3E-08 56.3 4.4 36 14-52 8-43 (191)
369 4dkx_A RAS-related protein RAB 96.5 0.051 1.7E-06 49.2 13.8 83 96-184 60-152 (216)
370 2iyv_A Shikimate kinase, SK; t 96.5 0.0011 3.6E-08 58.1 2.4 32 16-52 3-34 (184)
371 1kag_A SKI, shikimate kinase I 96.5 0.0013 4.4E-08 56.7 2.9 33 15-52 4-36 (173)
372 2qgz_A Helicase loader, putati 96.5 0.003 1E-07 60.7 5.7 38 15-52 152-190 (308)
373 2z4s_A Chromosomal replication 96.5 0.006 2.1E-07 61.5 8.2 38 15-52 130-169 (440)
374 1bif_A 6-phosphofructo-2-kinas 96.4 0.044 1.5E-06 55.5 14.7 40 13-52 37-76 (469)
375 1zuh_A Shikimate kinase; alpha 96.4 0.0017 5.9E-08 55.9 3.5 34 14-52 6-39 (168)
376 3lw7_A Adenylate kinase relate 96.4 0.0019 6.6E-08 55.1 3.8 28 16-47 2-29 (179)
377 2zej_A Dardarin, leucine-rich 96.4 0.0049 1.7E-07 53.7 6.5 20 17-36 4-23 (184)
378 2p65_A Hypothetical protein PF 96.4 0.0025 8.4E-08 54.9 4.5 39 13-51 41-86 (187)
379 3b9p_A CG5977-PA, isoform A; A 96.4 0.0086 2.9E-07 56.3 8.6 73 14-109 53-125 (297)
380 1aky_A Adenylate kinase; ATP:A 96.4 0.0021 7.1E-08 58.1 4.0 35 13-52 2-36 (220)
381 1pui_A ENGB, probable GTP-bind 96.4 0.017 5.8E-07 51.0 9.9 27 10-36 21-47 (210)
382 2ze6_A Isopentenyl transferase 96.4 0.0026 9E-08 59.2 4.7 34 16-54 2-35 (253)
383 3tlx_A Adenylate kinase 2; str 96.4 0.0029 9.9E-08 58.5 4.9 28 12-39 26-53 (243)
384 3iij_A Coilin-interacting nucl 96.4 0.0022 7.5E-08 55.9 3.9 34 14-52 10-43 (180)
385 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6.1E-08 55.8 3.3 32 16-52 3-34 (173)
386 2vo1_A CTP synthase 1; pyrimid 96.4 0.23 7.8E-06 46.4 17.5 169 13-185 21-261 (295)
387 2vli_A Antibiotic resistance p 96.4 0.0011 3.8E-08 57.6 2.0 31 14-47 4-34 (183)
388 3t15_A Ribulose bisphosphate c 96.4 0.0027 9.2E-08 60.4 4.7 36 13-51 34-69 (293)
389 3upu_A ATP-dependent DNA helic 96.3 0.026 9E-07 56.9 12.3 34 17-50 47-81 (459)
390 3cm0_A Adenylate kinase; ATP-b 96.3 0.0024 8.1E-08 55.8 4.0 34 14-52 3-36 (186)
391 3aez_A Pantothenate kinase; tr 96.3 0.0049 1.7E-07 59.4 6.5 43 12-54 87-131 (312)
392 2ewv_A Twitching motility prot 96.3 0.019 6.5E-07 56.6 10.9 84 13-107 134-219 (372)
393 1njg_A DNA polymerase III subu 96.3 0.015 5.2E-07 51.6 9.4 30 14-43 44-73 (250)
394 1w5s_A Origin recognition comp 96.3 0.024 8.1E-07 55.5 11.6 41 13-53 48-96 (412)
395 2c5m_A CTP synthase; cytidine 96.3 0.035 1.2E-06 51.5 11.6 165 14-184 22-260 (294)
396 2qag_A Septin-2, protein NEDD5 96.3 0.0031 1.1E-07 61.9 5.1 21 16-36 38-58 (361)
397 1g8f_A Sulfate adenylyltransfe 96.3 0.0026 9E-08 65.4 4.6 41 13-53 393-435 (511)
398 3d3q_A TRNA delta(2)-isopenten 96.3 0.0032 1.1E-07 61.5 4.9 35 15-54 7-41 (340)
399 1lv7_A FTSH; alpha/beta domain 96.3 0.014 4.8E-07 53.7 9.1 36 14-52 44-79 (257)
400 1via_A Shikimate kinase; struc 96.3 0.0021 7.1E-08 55.8 3.1 32 16-52 5-36 (175)
401 4fcw_A Chaperone protein CLPB; 96.2 0.0052 1.8E-07 58.1 6.1 43 14-56 46-88 (311)
402 4b4t_L 26S protease subunit RP 96.2 0.012 4.2E-07 59.2 8.9 70 13-106 213-283 (437)
403 2pt5_A Shikimate kinase, SK; a 96.2 0.0025 8.6E-08 54.6 3.3 31 17-52 2-32 (168)
404 1jjv_A Dephospho-COA kinase; P 96.2 0.0029 9.8E-08 56.4 3.8 33 15-53 2-34 (206)
405 4tmk_A Protein (thymidylate ki 96.2 0.0089 3E-07 54.3 7.0 40 15-55 3-43 (213)
406 3hjn_A DTMP kinase, thymidylat 96.2 0.0055 1.9E-07 54.9 5.6 39 17-56 2-40 (197)
407 2grj_A Dephospho-COA kinase; T 96.2 0.0039 1.3E-07 55.8 4.5 36 14-54 11-46 (192)
408 3n70_A Transport activator; si 96.2 0.0055 1.9E-07 51.7 5.2 36 16-52 25-60 (145)
409 4b4t_H 26S protease regulatory 96.2 0.085 2.9E-06 53.4 14.7 70 13-106 241-311 (467)
410 3eie_A Vacuolar protein sortin 96.2 0.008 2.7E-07 57.7 7.0 74 13-109 49-122 (322)
411 1zak_A Adenylate kinase; ATP:A 96.2 0.0026 9E-08 57.5 3.3 34 14-52 4-37 (222)
412 3v9p_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 57.6 4.2 36 14-49 24-63 (227)
413 3d8b_A Fidgetin-like protein 1 96.1 0.011 3.8E-07 57.7 8.0 71 13-106 115-185 (357)
414 2f6r_A COA synthase, bifunctio 96.1 0.0042 1.4E-07 58.8 4.7 36 12-53 72-107 (281)
415 1tq4_A IIGP1, interferon-induc 96.1 0.17 5.7E-06 50.6 16.4 26 309-334 323-348 (413)
416 3a8t_A Adenylate isopentenyltr 96.1 0.0061 2.1E-07 59.4 5.7 36 14-54 39-74 (339)
417 2qor_A Guanylate kinase; phosp 96.1 0.0024 8.2E-08 57.1 2.7 26 14-39 11-36 (204)
418 1d2n_A N-ethylmaleimide-sensit 96.1 0.0085 2.9E-07 55.8 6.5 36 12-50 61-96 (272)
419 1a5t_A Delta prime, HOLB; zinc 96.1 0.043 1.5E-06 52.9 11.7 30 12-41 21-50 (334)
420 4b3f_X DNA-binding protein smu 96.1 0.014 4.7E-07 61.7 8.8 43 17-62 207-249 (646)
421 4b4t_K 26S protease regulatory 96.1 0.017 5.7E-07 58.1 8.9 69 13-105 204-273 (428)
422 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 55.8 3.4 32 16-53 2-33 (204)
423 1sxj_E Activator 1 40 kDa subu 96.1 0.022 7.7E-07 54.7 9.6 26 14-40 36-61 (354)
424 1vht_A Dephospho-COA kinase; s 96.0 0.0041 1.4E-07 55.9 4.0 33 14-52 3-35 (218)
425 3exa_A TRNA delta(2)-isopenten 96.0 0.0052 1.8E-07 59.3 4.7 35 14-53 2-36 (322)
426 1sxj_B Activator 1 37 kDa subu 96.0 0.02 6.9E-07 53.9 8.9 27 15-42 43-69 (323)
427 3foz_A TRNA delta(2)-isopenten 96.0 0.008 2.7E-07 57.9 6.0 36 13-53 8-43 (316)
428 1zd8_A GTP:AMP phosphotransfer 96.0 0.0031 1.1E-07 57.2 3.0 34 14-52 6-39 (227)
429 3tau_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 56.6 3.0 27 13-39 6-32 (208)
430 3crm_A TRNA delta(2)-isopenten 96.0 0.0049 1.7E-07 59.7 4.4 35 15-54 5-39 (323)
431 3be4_A Adenylate kinase; malar 96.0 0.0047 1.6E-07 55.7 4.0 33 15-52 5-37 (217)
432 3szr_A Interferon-induced GTP- 96.0 0.0046 1.6E-07 65.1 4.4 73 97-169 146-229 (608)
433 4b4t_M 26S protease regulatory 96.0 0.015 5E-07 58.6 7.9 69 13-105 213-282 (434)
434 1ltq_A Polynucleotide kinase; 95.9 0.0054 1.8E-07 58.0 4.3 35 15-53 2-36 (301)
435 1kgd_A CASK, peripheral plasma 95.9 0.0044 1.5E-07 54.3 3.4 26 14-39 4-29 (180)
436 2jaq_A Deoxyguanosine kinase; 95.9 0.0052 1.8E-07 54.1 3.9 24 17-40 2-25 (205)
437 3ec1_A YQEH GTPase; atnos1, at 95.9 0.0039 1.3E-07 61.5 3.3 137 16-185 163-308 (369)
438 2bbw_A Adenylate kinase 4, AK4 95.9 0.0053 1.8E-07 56.5 4.0 26 14-39 26-51 (246)
439 2r2a_A Uncharacterized protein 95.9 0.006 2.1E-07 54.9 4.2 39 14-52 4-48 (199)
440 3ake_A Cytidylate kinase; CMP 95.9 0.0047 1.6E-07 54.7 3.5 31 17-52 4-34 (208)
441 2qp9_X Vacuolar protein sortin 95.9 0.013 4.4E-07 57.3 6.9 73 14-109 83-155 (355)
442 1cke_A CK, MSSA, protein (cyti 95.8 0.0059 2E-07 54.9 4.1 33 15-52 5-37 (227)
443 2g3y_A GTP-binding protein GEM 95.8 0.078 2.7E-06 47.7 11.6 21 16-36 38-58 (211)
444 2j41_A Guanylate kinase; GMP, 95.8 0.0042 1.4E-07 55.0 2.8 26 14-39 5-30 (207)
445 1ak2_A Adenylate kinase isoenz 95.8 0.0066 2.3E-07 55.4 4.2 34 14-52 15-48 (233)
446 2wkq_A NPH1-1, RAS-related C3 95.7 0.0079 2.7E-07 57.1 4.7 64 97-167 202-272 (332)
447 3u61_B DNA polymerase accessor 95.7 0.042 1.4E-06 52.3 9.8 39 12-53 45-83 (324)
448 3tr0_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 54.0 3.5 26 14-39 6-31 (205)
449 3nh6_A ATP-binding cassette SU 95.7 0.017 5.8E-07 55.5 7.0 33 8-40 73-105 (306)
450 2ce7_A Cell division protein F 95.7 0.032 1.1E-06 56.8 9.4 72 14-108 48-119 (476)
451 3vfd_A Spastin; ATPase, microt 95.7 0.026 8.9E-07 55.6 8.5 73 14-109 147-219 (389)
452 3fb4_A Adenylate kinase; psych 95.7 0.0069 2.4E-07 54.2 3.9 31 17-52 2-32 (216)
453 3ney_A 55 kDa erythrocyte memb 95.7 0.0062 2.1E-07 54.8 3.5 29 11-39 15-43 (197)
454 3nva_A CTP synthase; rossman f 95.7 0.071 2.4E-06 54.6 11.6 166 15-184 3-234 (535)
455 3e2i_A Thymidine kinase; Zn-bi 95.6 0.039 1.3E-06 50.3 8.6 97 13-123 26-125 (219)
456 2eyu_A Twitching motility prot 95.6 0.014 4.9E-07 54.5 6.0 39 13-51 23-62 (261)
457 2qnr_A Septin-2, protein NEDD5 95.6 0.063 2.2E-06 51.1 10.6 22 16-37 19-40 (301)
458 3a00_A Guanylate kinase, GMP k 95.6 0.0048 1.6E-07 54.3 2.4 26 15-40 1-26 (186)
459 4b4t_I 26S protease regulatory 95.6 0.029 9.8E-07 56.3 8.3 69 13-105 214-283 (437)
460 1z6t_A APAF-1, apoptotic prote 95.6 0.023 7.8E-07 58.9 8.0 42 13-54 145-190 (591)
461 1e4v_A Adenylate kinase; trans 95.6 0.01 3.4E-07 53.3 4.5 31 17-52 2-32 (214)
462 4hlc_A DTMP kinase, thymidylat 95.5 0.013 4.6E-07 52.7 5.2 33 16-49 3-35 (205)
463 3eph_A TRNA isopentenyltransfe 95.5 0.013 4.5E-07 58.4 5.5 35 14-53 1-35 (409)
464 1sxj_C Activator 1 40 kDa subu 95.5 0.022 7.7E-07 54.8 7.0 26 18-43 49-74 (340)
465 1z6g_A Guanylate kinase; struc 95.5 0.0061 2.1E-07 55.3 2.7 33 7-39 15-47 (218)
466 3sr0_A Adenylate kinase; phosp 95.5 0.0093 3.2E-07 53.9 3.9 85 17-109 2-86 (206)
467 3bs4_A Uncharacterized protein 95.4 0.054 1.8E-06 50.7 9.2 55 14-72 20-74 (260)
468 1tf7_A KAIC; homohexamer, hexa 95.4 0.031 1.1E-06 57.5 8.3 40 14-53 38-78 (525)
469 1lvg_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 53.8 3.2 26 15-40 4-29 (198)
470 3dl0_A Adenylate kinase; phosp 95.4 0.0076 2.6E-07 54.0 3.2 31 17-52 2-32 (216)
471 3llm_A ATP-dependent RNA helic 95.4 0.23 7.7E-06 45.0 13.2 123 15-140 76-219 (235)
472 1ofh_A ATP-dependent HSL prote 95.4 0.015 5.1E-07 54.6 5.2 37 14-53 49-85 (310)
473 2ohf_A Protein OLA1, GTP-bindi 95.4 0.047 1.6E-06 54.3 8.9 23 14-36 21-43 (396)
474 3r20_A Cytidylate kinase; stru 95.4 0.01 3.5E-07 54.7 3.9 34 14-52 8-41 (233)
475 2qmh_A HPR kinase/phosphorylas 95.4 0.015 5.2E-07 52.4 4.9 33 14-52 33-65 (205)
476 2zan_A Vacuolar protein sortin 95.3 0.016 5.5E-07 58.4 5.6 38 13-52 165-202 (444)
477 3cf2_A TER ATPase, transitiona 95.3 0.068 2.3E-06 57.8 10.7 36 13-51 236-271 (806)
478 3cr8_A Sulfate adenylyltranfer 95.3 0.012 4E-07 61.2 4.6 39 14-52 368-407 (552)
479 3pxi_A Negative regulator of g 95.3 0.022 7.4E-07 61.3 6.8 37 16-52 522-558 (758)
480 2xb4_A Adenylate kinase; ATP-b 95.3 0.012 3.9E-07 53.5 3.9 23 17-39 2-24 (223)
481 2dby_A GTP-binding protein; GD 95.3 0.068 2.3E-06 52.6 9.6 22 17-38 3-24 (368)
482 3h2y_A GTPase family protein; 95.2 0.011 3.7E-07 58.3 3.7 137 16-184 161-306 (368)
483 3pxg_A Negative regulator of g 95.2 0.018 6.1E-07 58.5 5.4 27 15-41 201-227 (468)
484 3lnc_A Guanylate kinase, GMP k 95.2 0.0061 2.1E-07 55.4 1.7 32 8-39 20-52 (231)
485 2bdt_A BH3686; alpha-beta prot 95.2 0.012 4.2E-07 51.4 3.6 33 16-52 3-35 (189)
486 2c9o_A RUVB-like 1; hexameric 95.1 0.029 1E-06 56.6 6.7 36 14-50 62-97 (456)
487 2bjv_A PSP operon transcriptio 95.1 0.018 6.1E-07 53.3 4.7 43 15-57 29-71 (265)
488 2ocp_A DGK, deoxyguanosine kin 95.1 0.013 4.3E-07 53.7 3.5 27 14-40 1-27 (241)
489 4e22_A Cytidylate kinase; P-lo 95.0 0.014 4.7E-07 54.1 3.6 26 14-39 26-51 (252)
490 2h92_A Cytidylate kinase; ross 95.0 0.011 3.7E-07 53.0 2.7 33 15-52 3-35 (219)
491 3sfz_A APAF-1, apoptotic pepti 94.9 0.054 1.8E-06 60.5 8.8 42 12-53 144-189 (1249)
492 2a5y_B CED-4; apoptosis; HET: 94.9 0.091 3.1E-06 54.2 9.8 24 14-37 151-174 (549)
493 1iqp_A RFCS; clamp loader, ext 94.8 0.043 1.5E-06 51.7 6.7 26 17-42 48-73 (327)
494 4ag6_A VIRB4 ATPase, type IV s 94.8 0.028 9.7E-07 55.3 5.6 37 16-52 36-72 (392)
495 1htw_A HI0065; nucleotide-bind 94.8 0.019 6.4E-07 49.6 3.7 30 10-39 28-57 (158)
496 1qvr_A CLPB protein; coiled co 94.8 0.05 1.7E-06 59.3 7.8 77 10-104 186-270 (854)
497 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.077 2.6E-06 51.3 8.3 114 14-147 170-284 (330)
498 3ice_A Transcription terminati 94.7 0.15 5.2E-06 50.6 10.4 49 13-62 172-222 (422)
499 3hu3_A Transitional endoplasmi 94.7 0.044 1.5E-06 56.0 6.8 71 13-106 236-306 (489)
500 3cf0_A Transitional endoplasmi 94.7 0.023 7.8E-07 54.0 4.4 36 13-51 47-82 (301)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-77 Score=604.77 Aligned_cols=347 Identities=36% Similarity=0.639 Sum_probs=305.0
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 81 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~ 81 (403)
|.+...+... .+|++|+++|++||||||++++||.+|+++|++|+++++|++||++++|+..++...+++++......+
T Consensus 88 ~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d 166 (443)
T 3dm5_A 88 GTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD 166 (443)
T ss_dssp TSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC
T ss_pred cCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC
Confidence 4433334443 368999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
|..++.+++..+...+||+|||||||+++.+..++.++..+.....|+.+++|+|+++++++.+.++.|++.+++.|||+
T Consensus 167 p~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIl 246 (443)
T 3dm5_A 167 AIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246 (443)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEE
Confidence 99999999999987789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhH--HHHHHHHHhc
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEEMQKKIMS 239 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~--~~~~~~~~~~ 239 (403)
||+|++++++.++++.+.++.||.|+++|+++++|++|+|++++++++|+||+.+|+|++++.+++++ ++ +.+++.+
T Consensus 247 TKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~ 325 (443)
T 3dm5_A 247 TKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLR 325 (443)
T ss_dssp ECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHT
T ss_pred ECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 65 8999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHh
Q 015657 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQ 318 (403)
Q Consensus 240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~ 318 (403)
|+||++||++|++++.||||+++||+||||+++ ++....+.+++++++|++||+|||++||+||++| ++||++|||+
T Consensus 326 ~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~ 403 (443)
T 3dm5_A 326 GKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEII--NYSRIKRIAR 403 (443)
T ss_dssp TCCCHHHHHHHHHHHHTTCC-------------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGC--CHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCHHHHHHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhc--ChHHHHHHHc
Confidence 999999999999999999999999999999984 5443446679999999999999999999999999 5899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 015657 319 DSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356 (403)
Q Consensus 319 gsg~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (403)
|||++++|||+||+||++|++|||+|. +|+|+.|
T Consensus 404 gsg~~~~~v~~ll~~~~~~~~~~~~~~----~~~~~~~ 437 (443)
T 3dm5_A 404 GSGTSTKDVKELLDQYRQMKKLFKSMN----KRQLSRL 437 (443)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHTCC----SCCCC--
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCHHHH
Confidence 999999999999999999988888875 3455543
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=5.3e-75 Score=589.74 Aligned_cols=330 Identities=38% Similarity=0.636 Sum_probs=297.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+|++|+++|++||||||++.+||.+|+.+|++|+++++|++|+++++++..++...+++++......+|..++..++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHhCCCcEEEEeCCCCcc--ccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 93 AKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~--~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
+...+||+|||||||+++ .+..++.++..+...+.|+++++|+|+++++++.+.+..|++.+++.|||+||+|+++++
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~ 254 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKG 254 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCH
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccc
Confidence 877799999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC--CCCHHHHH
Q 015657 171 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA--NFDFNDFL 248 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~--~~~~edl~ 248 (403)
+.++++...++.||.|+|+|++++++++|+|++++++++|+||+.+|+|++++.+++++++++++++.+| +||++||+
T Consensus 255 G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~ 334 (433)
T 3kl4_A 255 GGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVY 334 (433)
T ss_dssp HHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHH
T ss_pred hHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHhcCChhHHHhcCCCCCC-CC---chhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCH
Q 015657 249 KQTRTVARMGSMSRVIGMIPGMGK-IT---PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTE 324 (403)
Q Consensus 249 ~ql~~~~k~g~~~~~~~~~pg~~~-~~---~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~ 324 (403)
+|++++.||||+++||+||||+++ ++ ....+.+++++++|++||+|||++||+||++| ++||++|||+|||+++
T Consensus 335 ~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~gsg~~~ 412 (433)
T 3kl4_A 335 AQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNII--DKSRMRRIAEGSGLEV 412 (433)
T ss_dssp HHHHHHHHCCSSSGGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGC--CHHHHHHHHHHHTCCH
T ss_pred HHHHHHHhccCHHHHHHhCCCCccccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhc--cHHHHHHHHccCCCCH
Confidence 999999999999999999999985 43 13445678899999999999999999999999 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015657 325 QQVSQLVAQLFQMRVRMKNL 344 (403)
Q Consensus 325 ~~v~~l~~~~~~~~~~~~~~ 344 (403)
+|||+||+||++|++|||+|
T Consensus 413 ~~v~~ll~~~~~~~~~~~~~ 432 (433)
T 3kl4_A 413 EEVRELLEWYNNMNRLLKMV 432 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999986
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=1e-69 Score=550.17 Aligned_cols=333 Identities=47% Similarity=0.766 Sum_probs=298.7
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 81 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~ 81 (403)
|....++++. ++.+++++|++|+||||++.+||.+++..|++|+++++|+++|++++++..++...++++++.+...+
T Consensus 87 ~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~ 164 (425)
T 2ffh_A 87 GGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 (425)
T ss_dssp TSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCC
T ss_pred CCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCC
Confidence 4433566776 78999999999999999999999999999999999999999999999988888889999999877778
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
|.+++.++++.++..+||+|||||||+++.+..++.++..+...+.|+++++|+|+.+++++.+.++.|++.+++.|||+
T Consensus 165 p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIl 244 (425)
T 2ffh_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVL 244 (425)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEE
Confidence 88888889988866899999999999999888899999999888899999999999888999999999998899999999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~ 241 (403)
||+|++.+++.++++.+.+|.||.|+|.|+.++++++|+|++++++++|++|+.+++|++++.+++++++++. . +
T Consensus 245 TKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~----~-~ 319 (425)
T 2ffh_A 245 TKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA----K-E 319 (425)
T ss_dssp ESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------C
T ss_pred eCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH----H-h
Confidence 9999999999999999999999999999999999999999999999999999999999999877666555543 2 8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcC
Q 015657 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321 (403)
Q Consensus 242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg 321 (403)
|+++||++|++++.|||+++.+++||||+++ +.+.+++++++|++||+|||++||+||++| ++||++|||+|||
T Consensus 320 f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~----~~~~~~~~~~~~~~i~~smt~~e~~~p~~~--~~sr~~ria~gsg 393 (425)
T 2ffh_A 320 LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEERKDPRIL--NGSRRKRIAKGSG 393 (425)
T ss_dssp CCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC----CTTSCHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhhCcCChhhhhccCCCchh----hccccHHHHHHHHHHHHcCCHHHhcCcccc--ChHHHHHHHccCC
Confidence 9999999999999999999999999999973 234678999999999999999999999999 5799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657 322 KTEQQVSQLVAQLFQMRVRMKNLMGV 347 (403)
Q Consensus 322 ~~~~~v~~l~~~~~~~~~~~~~~~~~ 347 (403)
++++|||+||+||++|++|||+|.+.
T Consensus 394 ~~~~~v~~ll~~~~~~~~~~~~~~~~ 419 (425)
T 2ffh_A 394 TSVQEVNRFIKAFEEMKALMKSLEKK 419 (425)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998753
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=4.4e-69 Score=548.35 Aligned_cols=342 Identities=49% Similarity=0.790 Sum_probs=306.6
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV 80 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~ 80 (403)
|.....+.+...+|++|+++|++||||||++++||.+|+++ |++|++||+|++++++++++..+....++++++.+...
T Consensus 87 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~ 166 (433)
T 2xxa_A 87 GEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQ 166 (433)
T ss_dssp CSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSS
T ss_pred ccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCC
Confidence 44444566766789999999999999999999999999998 99999999999999999999888888999999887777
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 160 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI 160 (403)
+|.+++.+++..+.+.+||+|||||||+++.+..++.++..+.....|+++++|+|+.+++++...++.|+..+++.|+|
T Consensus 167 dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvV 246 (433)
T 2xxa_A 167 KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVV 246 (433)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEE
Confidence 89998888999887679999999999999888888999988888888999999999988888999899998889999999
Q ss_pred EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657 161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~ 240 (403)
+||+|++++++.++++.+.++.||.|+|.++.++++++|+|++++++++|++|+.+++|.+++.+++++++++.+++.++
T Consensus 247 lnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~ 326 (433)
T 2xxa_A 247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKG 326 (433)
T ss_dssp EECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred EecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhh--HhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHH
Q 015657 241 -NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVA 317 (403)
Q Consensus 241 -~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~--~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria 317 (403)
+|+++||++|++++.+||+++.+++||||++++.+ +.+ .++++++++++||+|||++||+||++| ++||++|||
T Consensus 327 ~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~-~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~--~~sr~~ria 403 (433)
T 2xxa_A 327 DGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPD-NVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIA 403 (433)
T ss_dssp TSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhhh-hhhccccHHHHHHHHHHHHcCCHHHhcCcccc--CHHHHHHHH
Confidence 89999999999999999999999999999987642 233 567889999999999999999999999 579999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657 318 QDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346 (403)
Q Consensus 318 ~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 346 (403)
+|||++++|||+||+||++|++|||+|.+
T Consensus 404 ~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 432 (433)
T 2xxa_A 404 AGSGMQVQDVNRLLKQFDDMQRMMKKMKK 432 (433)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998763
No 5
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=1.7e-67 Score=544.36 Aligned_cols=390 Identities=29% Similarity=0.551 Sum_probs=333.0
Q ss_pred CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657 2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 81 (403)
Q Consensus 2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~ 81 (403)
|.....+.+...++++|+++|.+||||||++.+||++|+++|++|++|++|+++|++++++..+....+++++......+
T Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~d 167 (504)
T 2j37_W 88 DPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMD 167 (504)
T ss_dssp CCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSC
T ss_pred ccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCC
Confidence 33344555555778999999999999999999999999999999999999999999999998888888999998777778
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
|.+++.+++..+.+.+||+|||||||++..+..++.++..+...+.|+.+++|+|+..++++...+..|++.+++.++|+
T Consensus 168 p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVl 247 (504)
T 2j37_W 168 PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIV 247 (504)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEE
Confidence 99998888988877899999999999998877788888777777789999999999888777788888877777789999
Q ss_pred ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657 162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241 (403)
Q Consensus 162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~ 241 (403)
||+|..++++.++++.+.++.||.|+|.+++++++.+|+|..++++++|.||+.+|+|.+.+. .+++++++.+++.+++
T Consensus 248 NK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~~k~~~g~ 326 (504)
T 2j37_W 248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALIEKLKHGQ 326 (504)
T ss_dssp ECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTTTSCTTSG
T ss_pred eCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 999999988888899999999999999999999999999999999999999999999999887 4555677888999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHhcCCCCCC--CCchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHHHHH
Q 015657 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKRV 316 (403)
Q Consensus 242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~ri 316 (403)
||++||++|++++.+||++++|++||||+++ +.......+++.++|+++||+|||++||+| |++|..++||++||
T Consensus 327 ~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ri 406 (504)
T 2j37_W 327 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRV 406 (504)
T ss_dssp GGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHH
Confidence 9999999999999999999999999999987 543334567899999999999999999999 99995567999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHhcc--c-CCCCCC-chhhH-HHH-h-ccccCCCCchhhcccc-chhhhhccC
Q 015657 317 AQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV--M-EGGSLP-ALSNL-EDA-L-KSEQKAPPGTARRKRR-SESRRQFVD 388 (403)
Q Consensus 317 a~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~-~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (403)
|+|||++++|||+||+||++|++|||+|.+. + ++|.|+ .+... +.+ + +..+.++|.|.+.-.+ .++++.+++
T Consensus 407 a~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (504)
T 2j37_W 407 ARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQ 486 (504)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHTTSSSSHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCCCchHHHHHHH
Confidence 9999999999999999999999988887652 1 234444 22111 111 2 5668889999998776 788888888
Q ss_pred CCCC
Q 015657 389 PAST 392 (403)
Q Consensus 389 ~~~~ 392 (403)
+...
T Consensus 487 ~~~~ 490 (504)
T 2j37_W 487 FQQG 490 (504)
T ss_dssp HC--
T ss_pred Hhcc
Confidence 7753
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=2.2e-64 Score=513.67 Aligned_cols=334 Identities=39% Similarity=0.686 Sum_probs=283.4
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHH
Q 015657 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ 84 (403)
Q Consensus 6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~ 84 (403)
..+.+..++|++|+++|++||||||++.+||.+++++|++|+++++|+|+|++++++..++...++++++.. ...+|..
T Consensus 90 ~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~ 169 (432)
T 2v3c_C 90 KKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVD 169 (432)
T ss_dssp CCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSST
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHH
Confidence 345555567889999999999999999999999999999999999999999999998888888899999876 4445555
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-CeeEEEEcc
Q 015657 85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTK 163 (403)
Q Consensus 85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-~i~GvIlNk 163 (403)
++.+++..+ .+||+|||||||++..+..++.++..+.....|+.+++|+|+..++++...+..|+..+ ++.|+|+||
T Consensus 170 i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 170 IVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp THHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred HHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeC
Confidence 666677766 78999999999999888888888888888788999999999988888888888888778 889999999
Q ss_pred CCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCC
Q 015657 164 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD 243 (403)
Q Consensus 164 ~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~ 243 (403)
+|...+++.++++.+.++.|+.|+|.|+.++++.+|+|..++++++|+||+.+++|.+.+.+++++ +++.+++..++|+
T Consensus 248 ~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~ 326 (432)
T 2v3c_C 248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFT 326 (432)
T ss_dssp SSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCH
T ss_pred CCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCC
Confidence 999988888889999999999999999999999999999999999999999999999999988877 8899999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHhcCCCCCCCC-chhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCC
Q 015657 244 FNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGK 322 (403)
Q Consensus 244 ~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~-~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~ 322 (403)
++||++|++++.+|||++++++||||++.+. ....+.+++++++|++||+|||++||+||++| ++||++|||+|||+
T Consensus 327 ~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i--~~sr~~rI~~gsg~ 404 (432)
T 2v3c_C 327 LNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII--KASRIRRIARGSGT 404 (432)
T ss_dssp HHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC--CHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc--CHHHHHHHHhhcCC
Confidence 9999999999999999999999999987642 22333467889999999999999999999999 58999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 015657 323 TEQQVSQLVAQLFQMRVRMKNL 344 (403)
Q Consensus 323 ~~~~v~~l~~~~~~~~~~~~~~ 344 (403)
+++|||+||+||++|++||+++
T Consensus 405 ~~~~v~~ll~~~~~~~~~~~~~ 426 (432)
T 2v3c_C 405 TENDVREVLRYYETTKNAIDKL 426 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888765
No 7
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.6e-39 Score=266.97 Aligned_cols=115 Identities=25% Similarity=0.502 Sum_probs=100.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHhcCC-CCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCcc
Q 015657 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 311 (403)
Q Consensus 234 ~~~~~~~~~~~edl~~ql~~~~k~g~~~~~~~~~p-g~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~ 311 (403)
++++.+|+||++||++|++++.||||+++|++||| |+++ ++..+.+.+++++++|++||+|||++||+||+|| ++|
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii--~~S 79 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKII--DSS 79 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGC--CHH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhc--CHH
Confidence 35788999999999999999999999999999999 9987 5433445678999999999999999999999999 589
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015657 312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 354 (403)
Q Consensus 312 r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
|++|||+|||++++|||+||+||++|++|||+|. +|++|
T Consensus 80 R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~----~g~~~ 118 (119)
T 2jqe_A 80 RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK----KNKLP 118 (119)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC----SCCCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc----cCCCC
Confidence 9999999999999999999999999977777654 34555
No 8
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=1.6e-38 Score=258.55 Aligned_cols=103 Identities=41% Similarity=0.678 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCc-hhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 319 (403)
Q Consensus 241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g 319 (403)
+||++||++|++++.||||+++|++||||++++.. ...+.+++++++++|||+|||++||+||++| ++||++|||+|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii--~~SR~~RIA~G 78 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAG 78 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhc--CHHHHHHHHcc
Confidence 59999999999999999999999999999987643 2344678899999999999999999999999 57999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHh
Q 015657 320 SGKTEQQVSQLVAQLFQMRVRMKNLM 345 (403)
Q Consensus 320 sg~~~~~v~~l~~~~~~~~~~~~~~~ 345 (403)
||++++|||+||+||++|++|||+|.
T Consensus 79 SG~~v~eVn~LLkqf~~m~kmmk~m~ 104 (105)
T 1hq1_A 79 SGMQVQDVNRLLKQFDDMQRMMKKMK 104 (105)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 9
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=4.9e-38 Score=263.59 Aligned_cols=108 Identities=27% Similarity=0.553 Sum_probs=95.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC--CCchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHH
Q 015657 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRR 313 (403)
Q Consensus 239 ~~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~ 313 (403)
.|+|||+||++|++++.||||+++|++||||+++ ++....+.+++++++|++||+|||++||+| |+||..++||+
T Consensus 12 ~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk 91 (129)
T 1mfq_C 12 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRI 91 (129)
T ss_dssp CSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHH
T ss_pred cCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHHH
Confidence 6799999999999999999999999999999987 543345578999999999999999999999 99995557999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657 314 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346 (403)
Q Consensus 314 ~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 346 (403)
+|||+|||++++|||+||+||++|++|||+|.+
T Consensus 92 ~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 92 QRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998864
No 10
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=1.2e-37 Score=255.45 Aligned_cols=104 Identities=27% Similarity=0.558 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-C-CchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHHHH
Q 015657 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 315 (403)
Q Consensus 241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~-~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~r 315 (403)
+||++||++|++++.||||+++|++||||+++ + +....+.++++++++++||+|||++||+| |++|+.++||++|
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 59999999999999999999999999999987 4 43344578899999999999999999999 9999655899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657 316 VAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344 (403)
Q Consensus 316 ia~gsg~~~~~v~~l~~~~~~~~~~~~~~ 344 (403)
||+|||++++|||+||+||++|++|||+|
T Consensus 81 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 81 VARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998875
No 11
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.3e-31 Score=260.20 Aligned_cols=209 Identities=44% Similarity=0.714 Sum_probs=188.0
Q ss_pred CCcccc-ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657 2 GGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV 80 (403)
Q Consensus 2 g~~~~~-l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~ 80 (403)
|+.... +++... +++++++|++|+||||++.+||.+++..|++|+++++|+++|++.+++..+.+..++++++.....
T Consensus 85 ~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~ 163 (297)
T 1j8m_F 85 GGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEK 163 (297)
T ss_dssp TCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCC
T ss_pred ccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCC
Confidence 333334 666544 899999999999999999999999999999999999999999999998888888899999876667
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCcc--ccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657 81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 158 (403)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~--~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G 158 (403)
+|.+++.+++..+++.+||+|||||||+++ .+..++.++..+.....++.+++|+|+.+++++...++.|++.+++.|
T Consensus 164 ~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~g 243 (297)
T 1j8m_F 164 DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGT 243 (297)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCE
Confidence 888888889998876899999999999998 777788888888778889999999999888888888888888888999
Q ss_pred EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCC
Q 015657 159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211 (403)
Q Consensus 159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~ 211 (403)
+|+||+|...+++.+.++...++.||.|++.|++++++++|+|++++++++|+
T Consensus 244 vVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 244 IIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp EEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred EEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999986
No 12
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.98 E-value=7.6e-31 Score=254.54 Aligned_cols=205 Identities=54% Similarity=0.842 Sum_probs=180.7
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI 85 (403)
Q Consensus 6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~ 85 (403)
.++++. ++.+++++|++|+||||++.+||.+++..|.+|+++++|++++.+.+++..+.+..++++++.+...+|.++
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l 168 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESI 168 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHH
Confidence 356665 788999999999999999999999999999999999999999999888877777789999987767788888
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
.+.++..+...+||+|||||||....|...+.++..+...+.|+.+++|+|+.+++++...++.+++.+++.|+|+||+|
T Consensus 169 ~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 88888887556899999999999988888888888888888899999999998888888888888888999999999999
Q ss_pred CCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCc
Q 015657 166 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~ 212 (403)
...+++.+.++.+.++.||.|++.|++++|+++|+|++++++++|||
T Consensus 249 ~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 249 GDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp GCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999986
No 13
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.97 E-value=8.5e-31 Score=255.20 Aligned_cols=204 Identities=44% Similarity=0.715 Sum_probs=184.1
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA 86 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~ 86 (403)
.+++...++.+++++|++||||||++.+||.+++..|.+|+++++|++|+++.+++..+....++++++......|..++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~ 175 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA 175 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHH
Confidence 56666678899999999999999999999999999999999999999999999998888888899988776666787777
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 160 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI 160 (403)
.+++..+...+||+|||||||.+..+..++.++..+...+ .|+.+++|+|+.++++++..++.|.+..++.|+|
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 7777776668999999999999887888888888877665 3789999999999999998888898889999999
Q ss_pred EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
+||+|.+.+++.++++...++.||.|++.|++++|+++|+|++++++++|
T Consensus 256 lTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 256 LTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp EECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred EeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999986
No 14
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.97 E-value=9.2e-31 Score=256.62 Aligned_cols=208 Identities=35% Similarity=0.582 Sum_probs=182.3
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh---ccCCceE-eCCCCCC
Q 015657 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE---QVGVPVY-TAGTEVK 81 (403)
Q Consensus 6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~---~~gv~v~-~~~~~~~ 81 (403)
.++++...++.+|+++|++|+||||++.+||.+++..|++|+++|+|++++++.+++..+.+ ..+++++ .......
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~ 175 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNAD 175 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCC
Confidence 46778778899999999999999999999999999999999999999999998888776665 6788888 4444567
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCC
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIG 155 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~ 155 (403)
|...+.+.+......+||+|||||||+++.+..++.++..+..++. |+.+++|+++.++++++..++.|.+.++
T Consensus 176 p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~ 255 (320)
T 1zu4_A 176 PASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVAD 255 (320)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCC
Confidence 7777777777665689999999999999887778888877766553 7899999999888888888888988899
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccH
Q 015657 156 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214 (403)
Q Consensus 156 i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv 214 (403)
+.|+|+||+|.+..++.+.++...++.||.|++.|++++++++|+|++|+++++| ++.
T Consensus 256 i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 256 VSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp CCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999998 543
No 15
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.96 E-value=1.5e-27 Score=234.46 Aligned_cols=202 Identities=41% Similarity=0.673 Sum_probs=187.4
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
...++.+++++|++||||||++.+||.++...+.+|.++++|++++++.+++..+....+++++.......|...+.+.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999889999999988877788888888888
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
......++|+++|||+|+.+.+..++.++..+.+++.|++.++|+|+.+++++.+.++.|++..++.++|+||+|+++++
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~ 284 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARG 284 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCC
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccch
Confidence 77666789999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCc
Q 015657 171 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~ 212 (403)
+.+.++...++.||.|++.|+.++++++|+|++++++++|-.
T Consensus 285 G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~~ 326 (328)
T 3e70_C 285 GAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326 (328)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC--
T ss_pred hHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999853
No 16
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.95 E-value=2e-27 Score=243.16 Aligned_cols=209 Identities=43% Similarity=0.702 Sum_probs=184.8
Q ss_pred cccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHH
Q 015657 5 VSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ 84 (403)
Q Consensus 5 ~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~ 84 (403)
..++++.-.++.+++|+|++||||||++..|+.++...+.+|.+.++|+++.++.+|+..+....++.++.......+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 45677777789999999999999999999999999988999999999999988878877666666788887666667777
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657 85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 158 (403)
Q Consensus 85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G 158 (403)
.+.+.+......+||+|||||+|+++.+..++.++..+..++ .|+.++||+|++++++++..++.|+..+++.+
T Consensus 363 tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itg 442 (503)
T 2yhs_A 363 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG 442 (503)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCE
Confidence 788888777678999999999999988888888887776554 37899999999999999999999999999999
Q ss_pred EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCcc
Q 015657 159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 213 (403)
Q Consensus 159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~d 213 (403)
+|+||+|++.++|.+.++...++.||.|+|.|++++++.+|++++|+++++|+.+
T Consensus 443 vIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~ 497 (503)
T 2yhs_A 443 ITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497 (503)
T ss_dssp EEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC--
T ss_pred EEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999864
No 17
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.95 E-value=4.3e-28 Score=181.75 Aligned_cols=66 Identities=38% Similarity=0.509 Sum_probs=61.6
Q ss_pred hhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657 277 QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344 (403)
Q Consensus 277 ~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~ 344 (403)
+.+.++++++++++||+|||++||+||++| ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus 4 ~~~~~e~~lkr~~aII~SMT~~Er~nP~ii--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 4 NDFLEQKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHHHCCHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHhCcccc--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999999999999999 579999999999999999999999999999999975
No 18
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.94 E-value=1.1e-25 Score=218.91 Aligned_cols=197 Identities=40% Similarity=0.681 Sum_probs=172.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++.+++++|++||||||++.+||.++...+.+|.+.++|++++++.+++..+....+++++.......|...+.+.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999988999999999999998888887776667788887766677877777777665
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
...++|++++||+|+.+.....+.++......+ .|+.+++++|+.+++++...++.|....++.++|+||.|..
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 556799999999999887777777776554432 47889999999999999999999988888999999999999
Q ss_pred CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
.+++.+.++...++.||.|+|.|++++|+++|+|++++++++|
T Consensus 261 a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 261 AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred ccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999986
No 19
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=2.1e-25 Score=221.42 Aligned_cols=205 Identities=41% Similarity=0.689 Sum_probs=179.0
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHH
Q 015657 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQ 84 (403)
Q Consensus 6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~ 84 (403)
..++++..++.+++++|++||||||++..||.++...+.+|.+.++|++++++.+|+..+....+++++..... ..|..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46777777899999999999999999999999999888999999999999998888877776778888877666 67877
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657 85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 158 (403)
Q Consensus 85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G 158 (403)
.+.+.+......++|++++|++|..+.....+.+|......+ .|+++++|+|++++++....+..|....++.+
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~ 307 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG 307 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhcCCeE
Confidence 777777765556789999999999887777777766443332 47888999999999999998888988889999
Q ss_pred EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
+|+||+|++.++|.+.++...++.||.|++.|+.++|+++|+|++|+++++|
T Consensus 308 iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 308 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp EEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred EEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999875
No 20
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.93 E-value=1.9e-25 Score=216.66 Aligned_cols=191 Identities=28% Similarity=0.349 Sum_probs=160.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
.++.+++++|++||||||++.+||.+++. .|++|+++++|++++.+.+++..++...+++++.. ..+. .++.++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~-~l~~al~ 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKE-EFQQAKE 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHH-HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHH-HHHHHHH
Confidence 35789999999999999999999999995 89999999999999999999988888888877643 2333 3455666
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH-HHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i~GvIlNk~D~~~~~ 170 (403)
.+ .+||+|||||||....+...+.++..+.....++.+++|+|++.+.. +...+..|. .+++.|+|+||+|...++
T Consensus 179 ~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~ 255 (296)
T 2px0_A 179 LF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSL 255 (296)
T ss_dssp HG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCC
T ss_pred Hh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccch
Confidence 54 68999999999999877777777776655445788999999977644 444445555 578899999999999999
Q ss_pred hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcC
Q 015657 171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILG 210 (403)
Q Consensus 171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG 210 (403)
+.+.++...++.||.|++.|+++ +++.+|+|++++++++|
T Consensus 256 g~~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 256 GSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHHHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred hHHHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 99999999999999999999998 89999999999999886
No 21
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=2.5e-24 Score=209.24 Aligned_cols=205 Identities=41% Similarity=0.689 Sum_probs=175.2
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHH
Q 015657 6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQ 84 (403)
Q Consensus 6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~ 84 (403)
..++++..++.+++++|++||||||++..||.++...+.+|.+.+.|++++++.+|+..+....+++++..... ..|..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 45777777889999999999999999999999999888999999999999988888877766678888876665 67777
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657 85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 158 (403)
Q Consensus 85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G 158 (403)
.+.+.+......++|.+++|++|..+.....+.++......+ .|+++++|+|++++++....++.|....++.+
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~ 250 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG 250 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCE
Confidence 777777665446789999999999887777777766443332 47888999999889888888888888888999
Q ss_pred EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657 159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210 (403)
Q Consensus 159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG 210 (403)
+|+||+|+..+++.+.++...++.||.|++.|+.++++++|+|++++++++|
T Consensus 251 iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 251 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred EEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998875
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.72 E-value=2.6e-16 Score=142.45 Aligned_cols=151 Identities=21% Similarity=0.169 Sum_probs=103.7
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++..... .+ .....++++++.+. ..+.+.+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-~~--~~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-WS--KAGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-HH--TTSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-HH--hcCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 577777 56999999999999999999999999999998876542 11 23345577776643 55667777774
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhh------hcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFN------IEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~------~~~~i~GvIlNk~D~~ 167 (403)
..||+||||||+.... .... +.. .+|.+++|+.+. ....+......+. ..+++ ++|+|+++..
T Consensus 74 -~~yD~viiD~~~~~~~--~~~~----~l~--~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSV--ITSA----AVM--VSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSH--HHHH----HHH--HCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCH--HHHH----HHH--HCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 6799999999998742 1111 111 147888888872 2244444443332 23445 9999999965
Q ss_pred Cc-hhHHHHHHHHhCCCe
Q 015657 168 SR-GGAALSVKEVSGKPI 184 (403)
Q Consensus 168 ~~-~~~~~~~~~~~g~pi 184 (403)
.. ...+....+.++.|+
T Consensus 144 ~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp EEEEHHHHHHHHHHTCCB
T ss_pred chHHHHHHHHHHHcCCce
Confidence 33 344566666688877
No 23
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.71 E-value=4.7e-16 Score=147.18 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh-----------hhccCCc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-----------GEQVGVP 72 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~-----------~~~~gv~ 72 (403)
++|+|+|+||+||||+|.+||.+|+++|++|++||+|++.+....- +... ....++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 6788899999999999999999999999999999999987544211 1110 0123566
Q ss_pred eEeCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657 73 VYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ 141 (403)
Q Consensus 73 v~~~~~~~~-----~~~~~--~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~ 141 (403)
+++.+.... ..+.. ...+..+. ...||||||||||.+..+. +...+ ....+|.+++|+.+.. ..
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPI----REGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHH----HTTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhh----hHhhCCEEEEeecCchhhHH
Confidence 666543221 11111 11222221 3579999999999764321 11111 0113588888888732 23
Q ss_pred HHH---HHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 142 EAA---ALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 142 ~~~---~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
.+. ..+..+.. .+++.|+|+|+++..........+.+.++.|+ ++..+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v--~~~Ip~ 210 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL--IHFVPR 210 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE--EEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcc--cccCCC
Confidence 332 33333322 45578999999986555556667778889887 344443
No 24
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.70 E-value=1.2e-16 Score=148.85 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHH-------------HHHH-------------h
Q 015657 14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAID-------------QLVI-------------L 65 (403)
Q Consensus 14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~-------------~l~~-------------~ 65 (403)
++++|+|+ ++||+||||+|.+||.+|+++ |++|++||+|++.+.... .+.. .
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 46777777 559999999999999999998 999999999998433211 1110 0
Q ss_pred hhccCCceEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657 66 GEQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-- 138 (403)
Q Consensus 66 ~~~~gv~v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-- 138 (403)
....++.+++.+..... .+.+.+.++.++ ..||+||||||+.+.... ..+ ...+|.+++|+.+.
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~------~~~--l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG------VWV--LEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH------HHH--GGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH------HHH--HHHCCEEEEEecCcHH
Confidence 11245667766443211 234567777775 589999999999875321 111 12248888888873
Q ss_pred cHHHHHHHHHHh---hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 139 TGQEAAALVTTF---NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 139 ~g~~~~~~~~~~---~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
....+......+ .......|+|+|+++...... ...+.+.++.|+
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v 201 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPI 201 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCe
Confidence 223333333333 333566899999998664432 356777889888
No 25
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.70 E-value=2.4e-16 Score=149.36 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=102.2
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh---------------hccCCceEeCC
Q 015657 14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------EQVGVPVYTAG 77 (403)
Q Consensus 14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~---------------~~~gv~v~~~~ 77 (403)
.+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+.... ...++.+++.+
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~ 96 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQ 96 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGG
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEecc
Confidence 35566665 669999999999999999999999999999999876533221100 11233444332
Q ss_pred CCC------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHH
Q 015657 78 TEV------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA 143 (403)
Q Consensus 78 ~~~------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~ 143 (403)
... .....+++.++.+.+..||||||||||.+.... .. .......|.+++|+.+. ....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~--~~----~~~~~~aD~viiv~~~~~~s~~~~ 170 (262)
T 2ph1_A 97 FLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP--LT----VMQDAKPTGVVVVSTPQELTAVIV 170 (262)
T ss_dssp GGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH--HH----HHHHHCCSEEEEEECSSSCCHHHH
T ss_pred ccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH--HH----HHhhccCCeEEEEecCccchHHHH
Confidence 111 012334444444433689999999999875311 11 11111358888888873 33444
Q ss_pred HHHHHHhh-hcCCeeEEEEccCCCC------C----chhHHHHHHHHhCCCe
Q 015657 144 AALVTTFN-IEIGITGAILTKLDGD------S----RGGAALSVKEVSGKPI 184 (403)
Q Consensus 144 ~~~~~~~~-~~~~i~GvIlNk~D~~------~----~~~~~~~~~~~~g~pi 184 (403)
...+..+. ..+++.|+|+|+++.. . ....+..+.+.++.|+
T Consensus 171 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 222 (262)
T 2ph1_A 171 EKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGF 222 (262)
T ss_dssp HHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSE
T ss_pred HHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCe
Confidence 44443332 2567889999999741 1 1234567778888886
No 26
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.69 E-value=3.9e-16 Score=151.02 Aligned_cols=168 Identities=16% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH--------------hhh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGE 67 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~--------------~~~ 67 (403)
.++++|+|+|+||+||||+|++||.+|+++|++|++||+|++.+... +.+.. ...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 46788999999999999999999999999999999999999764321 11110 011
Q ss_pred ccCCceEeCCCCCC------H-HHHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc
Q 015657 68 QVGVPVYTAGTEVK------P-SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 139 (403)
Q Consensus 68 ~~gv~v~~~~~~~~------~-~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~ 139 (403)
..++.+++.+.... . .......+..+ ....||+||||||+.+...... . ....+|.+++|+.+..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~~-----~--~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-----A--PLQHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-----G--GGGTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHHH-----H--HHHHCCEEEEEecCcH
Confidence 24566775543211 1 11122333331 1368999999999987532110 0 1123588899988732
Q ss_pred --HHHHHHHHHHh-----hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 140 --GQEAAALVTTF-----NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 140 --g~~~~~~~~~~-----~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
...+...+..+ +..+.+.|+|+|+++.. ..+..+.+.++.|+ ++..+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v--~~~Ip~ 246 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPD 246 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCc--eeeCCc
Confidence 23443333333 23556789999999853 45666777889888 444433
No 27
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.69 E-value=3.9e-16 Score=147.28 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=105.8
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHHHh--------hhccCCc
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVIL--------GEQVGVP 72 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~~~--------~~~~gv~ 72 (403)
+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+... +.+... ....+++
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~ 81 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVK 81 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeE
Confidence 3566665 67999999999999999999999999999999654321 111100 0113456
Q ss_pred eEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHH
Q 015657 73 VYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAA 145 (403)
Q Consensus 73 v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~ 145 (403)
+++....... .+.+.+.++.+. ..||+||||||+.+... .. .+.. .+|.+++|+.+.. ...+..
T Consensus 82 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~----~~~~--~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 82 VVPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AV----IAIA--AAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp EEECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HH----HHHH--HSSEEEEEECSSHHHHHHHHH
T ss_pred EEcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HH----HHHH--HCCEEEEEeCCChhHHHHHHH
Confidence 6663222111 234456666664 68999999999987521 11 1111 2478899988732 233333
Q ss_pred HHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657 146 LVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191 (403)
Q Consensus 146 ~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge 191 (403)
....+.. ...+.|+|+|+++..........+.+.++.|+ ++..+
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip 197 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV--IGLIP 197 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE--EEEEE
T ss_pred HHHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe--EEECC
Confidence 3333322 45678999999997655455666777788887 44443
No 28
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.69 E-value=6.6e-16 Score=148.13 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=103.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh-------------hhcc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-------------GEQV 69 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~-------------~~~~ 69 (403)
+++|+|+|+||+||||+|.+||.+|+++|++|++||+|++.+..... +... ....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 81 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG 81 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCC
Confidence 47888899999999999999999999999999999999987544211 1110 0123
Q ss_pred CCceEeCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-
Q 015657 70 GVPVYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT- 139 (403)
Q Consensus 70 gv~v~~~~~~~~-----~~~~~--~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~- 139 (403)
++.+++.+.... ..+.. .+.++.+. ...||||||||||.+..+. +...+ ....+|.+++|+.+..
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMPI----RENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHHH----HTTCCCEEEEEECSSHH
T ss_pred CeEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhhh----hhhhCCEEEEEecCCHH
Confidence 455665543211 01111 12233332 3579999999999764322 11111 1123588888888732
Q ss_pred -HHHHH---HHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657 140 -GQEAA---ALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191 (403)
Q Consensus 140 -g~~~~---~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge 191 (403)
...+. ..+..+.. .+++.|+|+|+++..........+.+.++.|+ ++..+
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~--l~~Ip 212 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQM--IHFVP 212 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCE--EEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCccc--cccCC
Confidence 22222 33333322 45578999999975544455666777888887 34443
No 29
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.69 E-value=3.1e-16 Score=153.03 Aligned_cols=169 Identities=16% Similarity=0.174 Sum_probs=103.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHHh--------------hh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVIL--------------GE 67 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~~--------------~~ 67 (403)
.+.+||+|+||||+||||+|.|||.+|++.|+||++||+|++.+... +..... ..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 35799999999999999999999999999999999999998764431 111000 01
Q ss_pred ccCCceEeCCCCCC----HHHHHHHHHHHH----HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-
Q 015657 68 QVGVPVYTAGTEVK----PSQIAKQGLEEA----KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM- 138 (403)
Q Consensus 68 ~~gv~v~~~~~~~~----~~~~~~~~l~~~----~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~- 138 (403)
..++.+.+.+.... ........+..+ .++.||++++|||+.+....-. ..+..++.+++|+.+.
T Consensus 126 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-------~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-------APLQHADQAVVVTANDF 198 (314)
T ss_dssp GGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-------GGGGTCSEEEEEECSSH
T ss_pred CCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-------hHHhhCCeEEEEeCCcH
Confidence 12344555433211 011111122221 2468999999999876432110 0122358899998872
Q ss_pred -cHHHHHHH---HHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657 139 -TGQEAAAL---VTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193 (403)
Q Consensus 139 -~g~~~~~~---~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v 193 (403)
..+.+.++ ++.+.. ..++.|+|+|+.+.. ..+..+.+.++.++ ++..+..
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~---~~v~~~a~~~~~~~--lg~IP~d 254 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPDL 254 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch---hHHHHHHHHhCCeE--EEEecCc
Confidence 22333333 333433 345689999987653 34566778888888 5655443
No 30
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.67 E-value=2.7e-16 Score=145.84 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=104.4
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHHHhh---h------ccCC
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVILG---E------QVGV 71 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~~~~---~------~~gv 71 (403)
+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+... +.+.... + ..++
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l 81 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNV 81 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCE
Confidence 3567776 55999999999999999999999999999999754321 1111000 0 1344
Q ss_pred ceEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657 72 PVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA 144 (403)
Q Consensus 72 ~v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~ 144 (403)
.+++....... .+.+.+.++.++ ..||+||||||+.+..+. ..+. ..+|.+++|+.+.. ...+.
T Consensus 82 ~~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~------~~~~--~~ad~vi~v~~~~~~~~~~~~ 152 (237)
T 1g3q_A 82 YVLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDA------MSAM--LSGEEALLVTNPEISCLTDTM 152 (237)
T ss_dssp EEECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHH------HHHH--TTCSEEEEEECSCHHHHHHHH
T ss_pred EEEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHH------HHHH--HHCCeEEEEecCCcccHHHHH
Confidence 45552211111 223455566664 689999999999875211 1111 23478889988742 23344
Q ss_pred HHHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657 145 ALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 145 ~~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~ 192 (403)
.....+.. ...+.|+|+|+++..........+.+.++.|+ ++..+.
T Consensus 153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 199 (237)
T 1g3q_A 153 KVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL--LAVIPE 199 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE--EEEEEC
T ss_pred HHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc--eeeCCC
Confidence 44443332 45678999999987654444566777788887 444433
No 31
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.67 E-value=5.7e-16 Score=145.45 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=105.8
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH--------------------H-h---hhcc
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV--------------------I-L---GEQV 69 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~--------------------~-~---~~~~ 69 (403)
+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+. . . ....
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTE 81 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSST
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCC
Confidence 4677776 559999999999999999999999999999996543321110 0 0 0113
Q ss_pred CCceEeCCCC----CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHH
Q 015657 70 GVPVYTAGTE----VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA 143 (403)
Q Consensus 70 gv~v~~~~~~----~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~ 143 (403)
++.+++.+.. ......+.+.++.++...||+||||||+.+... .. .+ ...+|.+++|+++. ....+
T Consensus 82 ~l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~~----~~--l~~ad~vi~v~~~~~~s~~~~ 153 (260)
T 3q9l_A 82 NLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--AL----MA--LYFADEAIITTNPEVSSVRDS 153 (260)
T ss_dssp TEEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--HH----HH--HHTCSEEEEEECSSHHHHHHH
T ss_pred CEEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--HH----HH--HHhCCEEEEEecCChhHHHHH
Confidence 5566655432 123345677778875338999999999987521 11 11 12358889998883 22344
Q ss_pred HHHHHHhhhc---------CCeeEEEEccCCCCCc--h--hHHHHHHHHhCCCeEEeeccCC
Q 015657 144 AALVTTFNIE---------IGITGAILTKLDGDSR--G--GAALSVKEVSGKPIKLVGRGER 192 (403)
Q Consensus 144 ~~~~~~~~~~---------~~i~GvIlNk~D~~~~--~--~~~~~~~~~~g~pi~fig~ge~ 192 (403)
......+... ....++|+|+++.... . -....+.+.++.|+ ++..+.
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~ 213 (260)
T 3q9l_A 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE 213 (260)
T ss_dssp HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEE--EEEEEC
T ss_pred HHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCce--EEecCC
Confidence 4444433321 1467999999985421 1 11356777888887 454443
No 32
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.67 E-value=3.7e-16 Score=150.32 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=100.2
Q ss_pred CEEEEEE---cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh-----------------------c
Q 015657 15 PTVILLA---GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----------------------Q 68 (403)
Q Consensus 15 ~~iI~v~---G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~-----------------------~ 68 (403)
+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+....-....+. .
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 113 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLT 113 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESS
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccC
Confidence 3455555 4899999999999999999999999999999998653211000000 1
Q ss_pred cCCceEeCCCCCCH-------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657 69 VGVPVYTAGTEVKP-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 135 (403)
Q Consensus 69 ~gv~v~~~~~~~~~-------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv 135 (403)
.++++++.+..... ...+++.++.++ ..||+|||||||.+... ... .+. .+|.+++|+
T Consensus 114 ~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~--~~~---~l~---~aD~viiv~ 184 (298)
T 2oze_A 114 DNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVY--TNN---AIV---ASDYVMIPL 184 (298)
T ss_dssp SSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHH--HHH---HHH---HCSEEEEEE
T ss_pred CCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHH--HHH---HHH---HCCeEEEEe
Confidence 24456655432211 123455566653 68999999999987531 111 111 248889998
Q ss_pred ecc--cHHHHHH---HHH----HhhhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCC
Q 015657 136 DAM--TGQEAAA---LVT----TFNIEIGITGAILTKLDGDSR--GGAALSVKEVSGK 182 (403)
Q Consensus 136 da~--~g~~~~~---~~~----~~~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~ 182 (403)
.+. ....+.. .+. .++..+++.|+|+|+++.... ...+..+.+.++.
T Consensus 185 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 185 QAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 872 2222222 222 234467789999999997653 2445566777765
No 33
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.67 E-value=7.9e-16 Score=147.07 Aligned_cols=149 Identities=22% Similarity=0.332 Sum_probs=100.6
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~ 69 (403)
..++++|+|++. +|+||||+|.+||..|++.|+||++||+|+++|.....+.. + ....
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~ 158 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIE 158 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCC
Confidence 356788999866 99999999999999999999999999999988765332110 0 0114
Q ss_pred CCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccH-HhHHHHHHHhhhcCCceEEEEEec--ccH
Q 015657 70 GVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTEVLLVVDA--MTG 140 (403)
Q Consensus 70 gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~-~l~~el~~i~~~~~~~~vllVvda--~~g 140 (403)
++.+++.+. ...+.+. +.+.++.++ ..||+||||||+.+.... ..+. .. +|.+++|+.+ ...
T Consensus 159 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~------~~--aD~vilVv~~~~~~~ 229 (271)
T 3bfv_A 159 DLDVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFS------KF--TGNVVYVVNSENNNK 229 (271)
T ss_dssp TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHH------HH--HCEEEEEEETTSCCH
T ss_pred CEEEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHH------HH--CCEEEEEEeCCCCcH
Confidence 566776654 2345443 466777775 689999999999875422 1111 11 3789999988 333
Q ss_pred HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657 141 QEAAALVTTFN-IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 141 ~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~ 169 (403)
..+......+. ...++.|+|+|+++....
T Consensus 230 ~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~ 259 (271)
T 3bfv_A 230 DEVKKGKELIEATGAKLLGVVLNRMPKDKS 259 (271)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEEEECC---
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCcCCCC
Confidence 44444444443 356789999999986543
No 34
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.66 E-value=8.8e-16 Score=147.89 Aligned_cols=150 Identities=23% Similarity=0.312 Sum_probs=102.9
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~ 69 (403)
..++++|+|++. +|+||||+|++||..|++.|++|++||+|+++|.....+.. + ....
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 168 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIA 168 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence 345678888865 99999999999999999999999999999988765332210 0 0113
Q ss_pred CCceEeCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657 70 GVPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ 141 (403)
Q Consensus 70 gv~v~~~~~~-~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~ 141 (403)
++.+++.+.. ..+.+. +.+.++.++ ..||+||||||+.+..... ..+. ..+|.+++|+.+ ....
T Consensus 169 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da-----~~l~--~~aD~vllVv~~~~~~~~ 240 (286)
T 3la6_A 169 KFDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDA-----AIVG--RHVGTTLMVARYAVNTLK 240 (286)
T ss_dssp TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH-----HHHT--TTCSEEEEEEETTTSBHH
T ss_pred CEEEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHH-----HHHH--HHCCeEEEEEeCCCCcHH
Confidence 4566665543 345543 467777775 6899999999998764221 1111 124889999988 3334
Q ss_pred HHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657 142 EAAALVTTFN-IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~~ 169 (403)
.+......+. ...++.|+|+|+++....
T Consensus 241 ~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 241 EVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 4444444443 357789999999986544
No 35
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.66 E-value=5.3e-16 Score=146.93 Aligned_cols=172 Identities=17% Similarity=0.221 Sum_probs=101.2
Q ss_pred ccCCCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh----------------------
Q 015657 10 FAKSRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------------- 66 (403)
Q Consensus 10 ~~~~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~---------------------- 66 (403)
+...++++|+|+ ++||+||||+|.+||.+|+ +|++|++||+|++.+....-.....
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDID 100 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGG
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHH
Confidence 345667888887 5599999999999999999 9999999999998865422110000
Q ss_pred -----hccCCceEeCCCCC---------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEE
Q 015657 67 -----EQVGVPVYTAGTEV---------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132 (403)
Q Consensus 67 -----~~~gv~v~~~~~~~---------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vl 132 (403)
...++.+++.+... .....+++.++.+. ..||+||||||+.+.. ... .. ...+|.++
T Consensus 101 ~~i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~----~~--l~~aD~vi 171 (267)
T 3k9g_A 101 STIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLK----NA--LLCSDYVI 171 (267)
T ss_dssp GGCEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHH----HH--HTTCSEEE
T ss_pred HhhccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHH----HH--HHHCCeEE
Confidence 01344555543211 12345667777764 7899999999998742 111 11 12258888
Q ss_pred EEEecc-cH-HHHHHHHH---HhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 133 LVVDAM-TG-QEAAALVT---TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 133 lVvda~-~g-~~~~~~~~---~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
+|+.+. .. ..+..... .+....++ ++|+|+++.......+....+. +.|+ ++..+..+.
T Consensus 172 vv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~~~~~l~~-~~~~--~~~Ip~~~~ 235 (267)
T 3k9g_A 172 IPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKTLFEILKT-KDRF--LGTISERED 235 (267)
T ss_dssp EEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCHHHHHHTT-STTE--EEEEEC---
T ss_pred EEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHHHHHHHhc-Cccc--ceecCcHHH
Confidence 888873 22 33333333 23333344 5999999654444333333322 5555 565555444
No 36
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.65 E-value=3.6e-16 Score=147.54 Aligned_cols=163 Identities=25% Similarity=0.305 Sum_probs=97.8
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------hhh---------ccCCce
Q 015657 13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LGE---------QVGVPV 73 (403)
Q Consensus 13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~~~---------~~gv~v 73 (403)
.++++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.. ..+.. +.. ..++.+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~v 82 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHL 82 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEE
Confidence 456778787 5699999999999999999999999999999986432 11100 000 134556
Q ss_pred EeCCCCCCHHH--HHH--HHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HH---H
Q 015657 74 YTAGTEVKPSQ--IAK--QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE---A 143 (403)
Q Consensus 74 ~~~~~~~~~~~--~~~--~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~---~ 143 (403)
++.+......+ ... ..+..+. ...||+||||||+.+... ... .+ ..+|.+++|+.+... .. .
T Consensus 83 lp~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~---~l---~~aD~viiv~~~~~~s~~~~~~~ 154 (257)
T 1wcv_1 83 LPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLN---AL---AAAEGVVVPVQAEYYALEGVAGL 154 (257)
T ss_dssp ECCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHH---HH---HHCSEEEEEEESSTHHHHHHHHH
T ss_pred EeCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHH---HH---HHCCeEEEEecCchHHHHHHHHH
Confidence 65543221111 000 1222221 157999999999987521 111 11 124889999987322 22 2
Q ss_pred HHHHHHh----hhcCCeeEEEEccCCCCCch--hHHHHHHHHhCCCe
Q 015657 144 AALVTTF----NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPI 184 (403)
Q Consensus 144 ~~~~~~~----~~~~~i~GvIlNk~D~~~~~--~~~~~~~~~~g~pi 184 (403)
...+..+ +..+++.|+|+|+++..... .....+.+.++.|+
T Consensus 155 ~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 155 LATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 2233322 33566789999999865432 23445666677765
No 37
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.4e-15 Score=147.41 Aligned_cols=149 Identities=27% Similarity=0.350 Sum_probs=101.5
Q ss_pred CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657 12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV 69 (403)
Q Consensus 12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~ 69 (403)
..++++|+|++. +|+||||+|.+||..|++.|+||++||+|+++|.....+.. + ....
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~ 180 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 180 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCC
Confidence 456788888876 99999999999999999999999999999987665332210 0 0124
Q ss_pred CCceEeCCC-CCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657 70 GVPVYTAGT-EVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ 141 (403)
Q Consensus 70 gv~v~~~~~-~~~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~ 141 (403)
++.+++.+. ...+.+ .+.+.++.++ ..||+|||||||.+...... .+. ..++.+++|+.+ ....
T Consensus 181 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~--~~ad~vilV~~~~~~~~~ 252 (299)
T 3cio_A 181 GFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-----VVG--RSVGTSLLVARFGLNTAK 252 (299)
T ss_dssp TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-----HHG--GGCSEEEEEEETTTSCTT
T ss_pred CEEEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-----HHH--HHCCEEEEEEcCCCChHH
Confidence 566776654 234443 3466777775 68999999999987542211 111 124888999987 2334
Q ss_pred HHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 142 EAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
.+...+..+. ...++.|+|+|+++...
T Consensus 253 ~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 253 EVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 4444444443 35678999999998654
No 38
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.63 E-value=2.8e-15 Score=139.34 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=95.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH-------------------HHhh------------
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------------------VILG------------ 66 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l-------------------~~~~------------ 66 (403)
|+|+|+||+||||+|.+||.+|+++|+||++||+|++ +.....+ ....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 5559999999999999999999999999999999997 3321111 0000
Q ss_pred ----------hccCCce-EeCCC------CCC-HH-HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC
Q 015657 67 ----------EQVGVPV-YTAGT------EVK-PS-QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 127 (403)
Q Consensus 67 ----------~~~gv~v-~~~~~------~~~-~~-~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~ 127 (403)
...++.+ ++.+. ... +. ..+++.++.+....||+||||||+.+.... .. + ...
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--~~----~--l~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--RG----T--AKA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--HH----H--HTT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--HH----H--HHH
Confidence 0112223 33221 111 22 457888888733799999999999875421 11 1 123
Q ss_pred CceEEEEEecc-cHHHHHHHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhC-CCe
Q 015657 128 PTEVLLVVDAM-TGQEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSG-KPI 184 (403)
Q Consensus 128 ~~~vllVvda~-~g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g-~pi 184 (403)
+|.+++|+++. ........+..+.. .....++|+|+++.. .....+.+.++ .++
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~---~~~~~~~~~~~~~~~ 211 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI---KEEKLIKKHLPEDKI 211 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH---HHHHHHHHHSCGGGE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh---hHHHHHHHHhcCCcc
Confidence 48889998873 22222222222322 334578999999843 23455666776 444
No 39
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.59 E-value=6.7e-14 Score=128.57 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=101.0
Q ss_pred EEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh---------hhHHHHHHhhhc------cCCceEeCCCC
Q 015657 16 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---------AAIDQLVILGEQ------VGVPVYTAGTE 79 (403)
Q Consensus 16 ~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp---------~~~~~l~~~~~~------~gv~v~~~~~~ 79 (403)
++|+|++ +||+||||+|.+||.+|+++|+||+++|.....+ .....+...... .....+.....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTS 81 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCCCC
Confidence 4666765 5999999999999999999999999986321111 111112111110 01111111111
Q ss_pred ----------CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-H-HHHHHHH
Q 015657 80 ----------VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALV 147 (403)
Q Consensus 80 ----------~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g-~~~~~~~ 147 (403)
......+++.++.+. ++||+|||||||++............+..... +++++|+.+.. + .++...+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~-~~vi~v~~~~~~~~~~~~~~i 159 (224)
T 1byi_A 82 PHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQ-LPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHT-CCEEEEEECSTTHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhC-CCEEEEecCCCCcHHHHHHHH
Confidence 012344566777774 68999999999987531100001122222222 56888888732 2 3344444
Q ss_pred HHh-hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcC
Q 015657 148 TTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERME 194 (403)
Q Consensus 148 ~~~-~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~ 194 (403)
+.+ +..+++.|+|+|+++.... ......+.+.++.|+ ++..+...
T Consensus 160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v--l~~Ip~~~ 207 (224)
T 1byi_A 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL--LGEIPWLA 207 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE--EEEECCCT
T ss_pred HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE--EEECCCCc
Confidence 333 4567889999999986532 344556667788887 45555544
No 40
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.58 E-value=4.4e-14 Score=129.52 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=90.4
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v-~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
+|+| .++||+||||+|.+||.+|+++| +|++||+|++.+.. ..+.. .....++++.+ .++.+ .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~--~~l~~~vi~~~-----------~l~~l-~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR--GSLPFKVVDER-----------QAAKY-A 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH--SCCSSEEEEGG-----------GHHHH-G
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC--CCCCcceeCHH-----------HHHHh-h
Confidence 4555 57799999999999999999999 99999999997554 22222 11111233211 34555 3
Q ss_pred CCCcEEEEeCCCC-ccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhh--cCCeeEEEEccCCCCC-c
Q 015657 96 KNVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNI--EIGITGAILTKLDGDS-R 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~-l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~-~ 169 (403)
..||+||||||+. ..... . .+ ...+|.+++|+.+.. ...+......+.. ..+ .++|+|+++... .
T Consensus 66 ~~yD~viiD~p~~~~~~~~--~----~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~ 136 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDL--E----AL--ADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSK 136 (209)
T ss_dssp GGCSEEEEEEECCCSSSHH--H----HH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSC
T ss_pred hcCCEEEEeCCCCcCcHHH--H----HH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccch
Confidence 6899999999998 54211 1 11 113478888888732 2333333433333 344 689999999765 3
Q ss_pred -hhHHHHHHHHhCCCe
Q 015657 170 -GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 -~~~~~~~~~~~g~pi 184 (403)
...+....+.+|.|+
T Consensus 137 ~~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 137 DGDEARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHcCCch
Confidence 333444445577776
No 41
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.56 E-value=1.2e-13 Score=136.57 Aligned_cols=42 Identities=36% Similarity=0.526 Sum_probs=37.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
...++++++|+||+||||+|++||.+|+++|+||++||+|++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345666777999999999999999999999999999999994
No 42
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.55 E-value=4.3e-14 Score=135.59 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=73.2
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh-------h--ccCC-ceEeCCC--CCC
Q 015657 15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG-------E--QVGV-PVYTAGT--EVK 81 (403)
Q Consensus 15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~-------~--~~gv-~v~~~~~--~~~ 81 (403)
+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|+..+.....+.... . ..++ ++++... ...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 83 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE 83 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence 4677776 569999999999999999999999999999994444433322111 0 1123 3333210 000
Q ss_pred -----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 82 -----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 82 -----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
....+.+.++.++ ..||+||||||+.+.. ... .+ ...+|.+++|+.+
T Consensus 84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~--~~~----~~--l~~aD~viiv~~~ 135 (286)
T 2xj4_A 84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSA--ITR----MA--HGRADLVVTPMND 135 (286)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCH--HHH----HH--HHTCSEEEEEEES
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccH--HHH----HH--HHHCCEEEEEEcC
Confidence 1124566677764 6899999999998742 111 11 1234888888876
No 43
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.54 E-value=4.3e-14 Score=140.32 Aligned_cols=43 Identities=37% Similarity=0.458 Sum_probs=38.5
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
++|+|+ ++||+||||+|.+||..|++.|+||++||+|++.+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 567776 6699999999999999999999999999999997654
No 44
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.50 E-value=8e-14 Score=139.88 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=97.1
Q ss_pred CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hCCCcEEEEeccCCChhhH----------------HHHHH----
Q 015657 12 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAI----------------DQLVI---- 64 (403)
Q Consensus 12 ~~~~~iI~v~-G~gGsGKTTla~~LA~~L~------~~G~kVllVd~D~~rp~~~----------------~~l~~---- 64 (403)
..++++|+|+ ++||+||||+|++||.+|+ ++|++|++||+|++.+... +.+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccc
Confidence 3457888887 6699999999999999999 4699999999999763221 00100
Q ss_pred ---h------hhccCCceEeCCCCCC-----HH--------------HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhH
Q 015657 65 ---L------GEQVGVPVYTAGTEVK-----PS--------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 116 (403)
Q Consensus 65 ---~------~~~~gv~v~~~~~~~~-----~~--------------~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~ 116 (403)
. ....++.+++.+.... .. ..+++.++.+. .+|||||||||+.+.. ...
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~--~~~ 261 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDA--FLK 261 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSH--HHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccH--HHH
Confidence 0 0124566666654311 00 12245566664 7899999999998853 111
Q ss_pred HHHHHHhhhcCCceEEEEEecccH---------HH---HHHHHHHhhhcCCeeEEEE--ccCCCCC-chhHHHHHHHHhC
Q 015657 117 DELKDVKRVLNPTEVLLVVDAMTG---------QE---AAALVTTFNIEIGITGAIL--TKLDGDS-RGGAALSVKEVSG 181 (403)
Q Consensus 117 ~el~~i~~~~~~~~vllVvda~~g---------~~---~~~~~~~~~~~~~i~GvIl--Nk~D~~~-~~~~~~~~~~~~g 181 (403)
..+ ..+|.+++|+.+... .. ....++.+.....+.|+|. |+.+... .......+.+.+|
T Consensus 262 ~~l------~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 262 NAL------ASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFG 335 (398)
T ss_dssp HHH------HHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHHHHHG
T ss_pred HHH------HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHHHHhc
Confidence 111 124888888876221 11 1222233344566666654 4444322 2234455667788
Q ss_pred CCe
Q 015657 182 KPI 184 (403)
Q Consensus 182 ~pi 184 (403)
.++
T Consensus 336 ~~v 338 (398)
T 3ez2_A 336 GDM 338 (398)
T ss_dssp GGB
T ss_pred ccc
Confidence 766
No 45
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.50 E-value=4.7e-13 Score=130.89 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=37.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.++++++|+||+||||+|++||.+|+++|+||++||+|+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4777778999999999999999999999999999999994
No 46
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.49 E-value=4.1e-13 Score=126.78 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=107.4
Q ss_pred ccCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEe-----ccCCChhhHHHHHHhhhccCCc----eEeCCCC
Q 015657 10 FAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVILGEQVGVP----VYTAGTE 79 (403)
Q Consensus 10 ~~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd-----~D~~rp~~~~~l~~~~~~~gv~----v~~~~~~ 79 (403)
++....+.++|+|. +|+||||+++.|+++|+++|++|..+. +.+...+. ..+ ....+++ .+.....
T Consensus 21 ~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~-~~~---~~~~g~~~~~~~~~~~~p 96 (251)
T 3fgn_A 21 YFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDL-AEV---GRLAGVTQLAGLARYPQP 96 (251)
T ss_dssp -CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHH-HHH---HHHHCCCEEEEEEECSSS
T ss_pred hcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHH-HHH---HHHcCCCCCCCCeeECCC
Confidence 34556788999999 899999999999999999999999876 21111111 111 1112221 1211111
Q ss_pred CC-------------HHHHHHHHHHHHHhCCCcEEEEeCCCCcccc--HHhHHHHHHHhhhcCCceEEEEEecccH--HH
Q 015657 80 VK-------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 142 (403)
Q Consensus 80 ~~-------------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d--~~l~~el~~i~~~~~~~~vllVvda~~g--~~ 142 (403)
.. ..+.+.+.+..+ ..+||+||||++|++... ... ....++.+.+. .++++|+++..+ ..
T Consensus 97 ~sP~~aa~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~-~~~adla~~l~-~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 97 MAPAAAAEHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPG-VTLRDVAVDVA-AAALVVVTADLGTLNH 173 (251)
T ss_dssp SCHHHHHHHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTT-EEHHHHHHHTT-CEEEEEECSSTTHHHH
T ss_pred CChHHHHHHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCccc-chHHHHHHHcC-CCEEEEEcCCCccHHH
Confidence 11 223455556655 368999999999988541 210 11234555555 899999999533 23
Q ss_pred HHHHHHH-hhhcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657 143 AAALVTT-FNIEIGITGAILTKLDGDS--RGGAALSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 143 ~~~~~~~-~~~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi~fig~ge~v~~ 195 (403)
+...... ....+++.|+|+|++..+. .........+.. .|+ +|..|..+.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpv--LG~iP~~~~ 226 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMV--RAALPAGAA 226 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCE--EEEEETTGG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCE--EEEeeCCCC
Confidence 3333332 2567899999999996432 122234444555 887 888877654
No 47
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.48 E-value=8.7e-14 Score=139.91 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hCCCcEEEEeccCCChhh----------------HHHHHH----
Q 015657 12 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAA----------------IDQLVI---- 64 (403)
Q Consensus 12 ~~~~~iI~v~-G~gGsGKTTla~~LA~~L~------~~G~kVllVd~D~~rp~~----------------~~~l~~---- 64 (403)
..++++|+|+ ++||+||||+|++||.+|+ ++|++|++||+|++.... .+.+..
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----------CCHHHHHHHTCCH
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 3467888877 6799999999999999999 679999999999876321 000100
Q ss_pred ---h------hhccCCceEeCCCCCC-----HHH--------------HHHHHHHHHHhCCCcEEEEeCCCCccccHHhH
Q 015657 65 ---L------GEQVGVPVYTAGTEVK-----PSQ--------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 116 (403)
Q Consensus 65 ---~------~~~~gv~v~~~~~~~~-----~~~--------------~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~ 116 (403)
. ....|+.+++.+.... ... ..+..++.+ +.+|||||||||+.+.. ...
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~yD~VIID~pP~~~~--~~~ 264 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRV-ADDYDFIFIDTGPHLDP--FLL 264 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGS-GGGCSEEEEEECSSCSH--HHH
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHH-hhcCCEEEEECCCCccH--HHH
Confidence 0 0124566666654311 000 112333444 36899999999998852 111
Q ss_pred HHHHHHhhhcCCceEEEEEecccH---------H---HHHHHHHHhhhcCCeeEE--EEccCCCCCch-hHHHHHHHHhC
Q 015657 117 DELKDVKRVLNPTEVLLVVDAMTG---------Q---EAAALVTTFNIEIGITGA--ILTKLDGDSRG-GAALSVKEVSG 181 (403)
Q Consensus 117 ~el~~i~~~~~~~~vllVvda~~g---------~---~~~~~~~~~~~~~~i~Gv--IlNk~D~~~~~-~~~~~~~~~~g 181 (403)
..+ ..+|.+++|+.+... . .....++.+.....+.|+ ++|+++..... .....+.+.+|
T Consensus 265 ~al------~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 265 NGL------AASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYA 338 (403)
T ss_dssp HHH------HHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHH------HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCchhHHHHHHHHHHHhh
Confidence 111 124888888876321 1 112222333445666664 66777743222 33355666789
Q ss_pred CCe
Q 015657 182 KPI 184 (403)
Q Consensus 182 ~pi 184 (403)
.++
T Consensus 339 ~~v 341 (403)
T 3ez9_A 339 SNI 341 (403)
T ss_dssp TSE
T ss_pred Hhh
Confidence 887
No 48
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.48 E-value=1.7e-12 Score=127.28 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=38.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
....++++++|+||+||||+|++||..|+++|+||++||+|++
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3445777788999999999999999999999999999999987
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=5e-13 Score=132.30 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=88.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-------HHHHhhhccCCceEeCCCCCCH--
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------QLVILGEQVGVPVYTAGTEVKP-- 82 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-------~l~~~~~~~gv~v~~~~~~~~~-- 82 (403)
..++.+|+++|.+|+||||++.+|+..++..|++|+++++|+..+.... .........++.+.........
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3467889999999999999999999999999999999999988765211 1112222334444444332221
Q ss_pred -HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657 83 -SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 161 (403)
Q Consensus 83 -~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl 161 (403)
....++.+..+...++|++||||||....... + .-.+|.+++|+|+..+........... .. ...+|+
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~-------~--~~~aD~vl~V~d~~~~~~~~~l~~~~~-~~-p~ivVl 224 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEVA-------V--ANMVDTFVLLTLARTGDQLQGIKKGVL-EL-ADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHH-------H--HTTCSEEEEEEESSTTCTTTTCCTTSG-GG-CSEEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH-------H--HHhCCEEEEEECCCCCccHHHHHHhHh-hc-CCEEEE
Confidence 22334555666667899999999995432111 1 123588999999855432211111111 11 345899
Q ss_pred ccCCCCCc
Q 015657 162 TKLDGDSR 169 (403)
Q Consensus 162 Nk~D~~~~ 169 (403)
||+|....
T Consensus 225 NK~Dl~~~ 232 (355)
T 3p32_A 225 NKADGEHH 232 (355)
T ss_dssp ECCCGGGH
T ss_pred ECCCCcCh
Confidence 99997643
No 50
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.46 E-value=4.8e-13 Score=131.49 Aligned_cols=44 Identities=36% Similarity=0.428 Sum_probs=40.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
...+++++++|+||+||||+|++||.+|++.|++|++||+|++.
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 44578888899999999999999999999999999999999755
No 51
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.44 E-value=8.5e-13 Score=122.89 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=105.3
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---cCCC--hh--hHHHHHHhhh------ccCCceEeCCCC
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYR--PA--AIDQLVILGE------QVGVPVYTAGTE 79 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---D~~r--p~--~~~~l~~~~~------~~gv~v~~~~~~ 79 (403)
+.+.++|+|. +|+||||+++.|+++|+++|++|.+... -+.. .. ..+.+..... ..+...+.. .
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~--p 80 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQ--A 80 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESS--S
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECC--C
Confidence 4578999999 9999999999999999999999998751 1111 10 0122111110 112112211 1
Q ss_pred CCH------------HHHHHHHHHH-HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHH
Q 015657 80 VKP------------SQIAKQGLEE-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 144 (403)
Q Consensus 80 ~~~------------~~~~~~~l~~-~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~ 144 (403)
..| .+.+.+.+.. + ..+||+||||+||++...........++...+. .++++|+++..+ .++.
T Consensus 81 ~sp~~aa~~~~~~i~~~~i~~~~~~~l-~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~-~pviLV~~~~~~~i~~~~ 158 (228)
T 3of5_A 81 VAPHIIAAKTKVDISIENLKQFIEDKY-NQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQ-IPVLLVSAIKVGCINHTL 158 (228)
T ss_dssp SCHHHHHHHTTCCCCHHHHHHHHHGGG-GSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHT-CCEEEEEECSTTHHHHHH
T ss_pred CCHHHHHHHcCCCCCHHHHHHHHHHHH-HccCCEEEEECCCccccccccchhHHHHHHHcC-CCEEEEEcCCcchHHHHH
Confidence 111 2334555555 4 378999999999887531110011234444444 789999999533 3333
Q ss_pred HHHHH-hhhcCCeeEEEEccCCCC-Cc-hhHHHHHHHHhCCCeEEeeccC
Q 015657 145 ALVTT-FNIEIGITGAILTKLDGD-SR-GGAALSVKEVSGKPIKLVGRGE 191 (403)
Q Consensus 145 ~~~~~-~~~~~~i~GvIlNk~D~~-~~-~~~~~~~~~~~g~pi~fig~ge 191 (403)
..... ....+++.|+|+|+++.+ .+ ......+.+.+|.|+ +|..|
T Consensus 159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pv--LG~iP 206 (228)
T 3of5_A 159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKC--SAKIS 206 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCC--SEEEE
T ss_pred HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCE--EEECC
Confidence 33333 356788999999999876 33 344556667799999 88777
No 52
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.44 E-value=6.6e-13 Score=131.51 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=37.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~ 54 (403)
...++++++|+||+||||+|++||..|+ +.|+||++||+|+.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3456777789999999999999999999 89999999999984
No 53
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=3.5e-12 Score=125.57 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=119.1
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH----H---hhhccCCceEeCCCC-
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV----I---LGEQVGVPVYTAGTE- 79 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~----~---~~~~~gv~v~~~~~~- 79 (403)
+.+...+..+++++|++|+||||++.+|+..+...|.+|.+++.|++.+.....+. . +....+..+.+....
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~ 128 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSG 128 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC--
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccc
Confidence 34555677899999999999999999999999999999999999998764311110 0 000011111111111
Q ss_pred -C-CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCee
Q 015657 80 -V-KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT 157 (403)
Q Consensus 80 -~-~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~ 157 (403)
. .......+.+..+.+.+|+++||||||....... + ...+|.+++|+|+..+.... ..+...... ..
T Consensus 129 ~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~-------~--~~~aD~vl~Vvd~~~~~~~~-~l~~~~~~~-p~ 197 (341)
T 2p67_A 129 HLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE-------V--ARMVDCFISLQIAGGGDDLQ-GIKKGLMEV-AD 197 (341)
T ss_dssp ---CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-------H--HTTCSEEEEEECC------C-CCCHHHHHH-CS
T ss_pred ccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH-------H--HHhCCEEEEEEeCCccHHHH-HHHHhhhcc-cC
Confidence 0 1112223334444457899999999997643211 1 13458899999986543211 010000111 23
Q ss_pred EEEEccCCCCCchhHH---HHHHH---HhC-------CCeEEee--ccCCcCCCCCCCchhhhhhhcCCccHH-HHHHHH
Q 015657 158 GAILTKLDGDSRGGAA---LSVKE---VSG-------KPIKLVG--RGERMEDLEPFYPDRMAGRILGMGDVL-SFVEKA 221 (403)
Q Consensus 158 GvIlNk~D~~~~~~~~---~~~~~---~~g-------~pi~fig--~ge~v~~l~~f~~~~~~~r~lG~~dv~-~l~e~~ 221 (403)
.+|+||+|........ ..+.+ ..+ .|+.+++ .++.++++...-.+......-+ +.+. ...+.+
T Consensus 198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~-~~~~~~r~~~~ 276 (341)
T 2p67_A 198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS-GRLQQVRQQQS 276 (341)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHHHH
Confidence 5899999976432211 12222 122 3444444 4444444221111111000001 1111 111111
Q ss_pred HHHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 015657 222 QEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSM 260 (403)
Q Consensus 222 ~e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~~ 260 (403)
.+.+.+.-.+.+.+++.++ ++.++++..++.....|.+
T Consensus 277 ~~~~~e~i~e~l~~~~~~~-~~~~~~~~~l~~~v~~~~~ 314 (341)
T 2p67_A 277 VEWLRKQTEEEVLNHLFAN-EDFDRYYRQTLLAVKNNTL 314 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhC-cchhHHHHHHHHHHHhCCC
Confidence 1222222234455555553 8888888888887777764
No 54
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.36 E-value=2.1e-12 Score=135.94 Aligned_cols=49 Identities=35% Similarity=0.516 Sum_probs=43.2
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657 9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58 (403)
Q Consensus 9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~ 58 (403)
.|....+++++++|+||+||||+|++||.+++++|+||++||+|+. +..
T Consensus 2 ~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l 50 (589)
T 1ihu_A 2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNV 50 (589)
T ss_dssp GGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCH
T ss_pred CCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCH
Confidence 3555677899999999999999999999999999999999999984 444
No 55
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.35 E-value=9.1e-12 Score=124.01 Aligned_cols=148 Identities=19% Similarity=0.185 Sum_probs=88.9
Q ss_pred ccccCCCCEEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-----------hhHHHHHH-----------
Q 015657 8 LVFAKSRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----------AAIDQLVI----------- 64 (403)
Q Consensus 8 l~~~~~~~~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-----------~~~~~l~~----------- 64 (403)
+.....++++|+|++ +||+||||+|.+||.+|+++|++|++||+|.+.. ...+.+..
T Consensus 136 ~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~ 215 (373)
T 3fkq_A 136 ISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLK 215 (373)
T ss_dssp CCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHH
T ss_pred ccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhccccccccc
Confidence 334556788898885 6999999999999999999999999999993321 11111111
Q ss_pred hh-----hccCCceEeCCCCCC-----HHHHHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEE
Q 015657 65 LG-----EQVGVPVYTAGTEVK-----PSQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133 (403)
Q Consensus 65 ~~-----~~~gv~v~~~~~~~~-----~~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vll 133 (403)
+. ...|+.+++.+.... ....+...++.+. +..||+||||||++...+. ..+ ...+|.+++
T Consensus 216 l~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~------~~~--l~~aD~viv 287 (373)
T 3fkq_A 216 LESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEK------LKL--LSKAWRIIV 287 (373)
T ss_dssp HHHTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHH------HHH--HTTCSEEEE
T ss_pred HHHHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH------HHH--HHHCCEEEE
Confidence 00 124566665443211 1233444455543 3689999999998775311 111 123488888
Q ss_pred EEeccc-----HHHHHHHHHHhhhcCCeeEEEEccC
Q 015657 134 VVDAMT-----GQEAAALVTTFNIEIGITGAILTKL 164 (403)
Q Consensus 134 Vvda~~-----g~~~~~~~~~~~~~~~i~GvIlNk~ 164 (403)
|+.+.. ..++.+.++.+..... .++|.|+.
T Consensus 288 v~~~~~~s~~~l~~~~~~l~~l~~~~~-~~vv~N~~ 322 (373)
T 3fkq_A 288 VNDGSQLSNYKFMRAYESVVLLEQNDD-INIIRNMN 322 (373)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHTTSTT-CCCGGGEE
T ss_pred EecCCchHHHHHHHHHHHHHHhcccCC-cEEEehhH
Confidence 888732 2455555555544333 33444443
No 56
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.35 E-value=3e-12 Score=126.46 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=39.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~r 55 (403)
..+.++++++|+||+||||+|++||.+++ +.|++|++||+|++.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 44568999999999999999999999999 899999999999653
No 57
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=1.1e-12 Score=123.19 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=83.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------------HHHHHHhhhccCCceEeC-C
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILGEQVGVPVYTA-G 77 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------------~~~l~~~~~~~gv~v~~~-~ 77 (403)
..++.+++++|++||||||++.+|+.+++ .|++|++||+|++.... .+.........+..+++. .
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence 34568888899999999999999999999 99999999999875432 111100000000000000 0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHH----H-H
Q 015657 78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV----T-T 149 (403)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~----~-~ 149 (403)
........+.+.++.+. .+||++||||||....... ......+...+..+-+++|+|+... .+..... . .
T Consensus 90 ~~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLF-HEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhh-hhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 00011233445555554 4699999999998643110 0000111122222566788887432 2222111 1 1
Q ss_pred hhhcCCeeEEEEccCCCCC
Q 015657 150 FNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 150 ~~~~~~i~GvIlNk~D~~~ 168 (403)
.....++ .+|+||+|...
T Consensus 168 ~~~~~p~-~iv~NK~D~~~ 185 (262)
T 1yrb_A 168 LRLGATT-IPALNKVDLLS 185 (262)
T ss_dssp HHHTSCE-EEEECCGGGCC
T ss_pred cccCCCe-EEEEecccccc
Confidence 1223443 48999999654
No 58
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.29 E-value=5e-11 Score=111.84 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=92.5
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEe-----ccCC---ChhhHHHH-HHhhhcc-CCc-----eEeCC
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVY---RPAAIDQL-VILGEQV-GVP-----VYTAG 77 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd-----~D~~---rp~~~~~l-~~~~~~~-gv~-----v~~~~ 77 (403)
..+.++|+|. +|+|||++++.|+++|+++|++|.++. ++.. ..+. ..+ ....... +++ .+...
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~-~~~~~~~~~~~~g~~~~~~~p~~~~ 98 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDA-HLFLQDNRLLDRSLTLKDISFYRYH 98 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHH-HHHHHHHHTTCTTCCHHHHCCEECS
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchH-HHHHHHHHHHhCCCChHHeeeEEEC
Confidence 4588999999 999999999999999999999999886 2211 1111 111 0001111 222 11111
Q ss_pred CCC--------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--H
Q 015657 78 TEV--------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 141 (403)
Q Consensus 78 ~~~--------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~ 141 (403)
... ...+.+.+.+..+ ...||+||||++|++...-.-.....++.+.+. .++++|+++..+ .
T Consensus 99 ~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~-~pVILV~~~~lg~i~ 176 (242)
T 3qxc_A 99 KVSAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLDFALKLK-AKMLLISHDNLGLIN 176 (242)
T ss_dssp SSSCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHT-CEEEEEECCSTTHHH
T ss_pred CCCChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHHHHHHcC-CCEEEEEcCCCcHHH
Confidence 111 1233455666665 378999999999988642100011234445554 789999999544 2
Q ss_pred HHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657 142 EAAALVTTF-NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 142 ~~~~~~~~~-~~~~~i~GvIlNk~D~~~ 168 (403)
++...+..+ ...+. .|+|+|+++.+.
T Consensus 177 ~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 177 DCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 333333333 45778 999999998765
No 59
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.24 E-value=8.4e-11 Score=117.04 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=36.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
+++++++|+||+||||+|++||.+++++|++|++||+ ++.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~ 41 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP 41 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC
Confidence 4788899999999999999999999999999999999 653
No 60
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.16 E-value=6.3e-11 Score=124.70 Aligned_cols=44 Identities=34% Similarity=0.416 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
.+..+++++|++|+||||+|++||..|+++|++|+++|+|++.+
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~ 368 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 368 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC--
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCccc
Confidence 34567777899999999999999999999999999999998743
No 61
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.03 E-value=2.4e-09 Score=105.65 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-------HHHhhhccCCceEeCCC--CCC-HH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGT--EVK-PS 83 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-------l~~~~~~~gv~v~~~~~--~~~-~~ 83 (403)
...+|+++|.+||||||+...|+..+...+.+|.++..|++.+..... +..++......+..... ... ..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 367899999999999999999999999889999999999887542111 11111111111111110 000 00
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEcc
Q 015657 84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 163 (403)
Q Consensus 84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk 163 (403)
....+++..+...++|++||||||....+.. +. -..+.+++|+|+..+........... .. ..-+|+||
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~~~-------l~--~~~d~vl~V~d~~~~~~~~~i~~~il-~~-~~ivVlNK 221 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSEFA-------VA--DMVDMFVLLLPPAGGDELQGIKRGII-EM-ADLVAVTK 221 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CHHH-------HH--TTCSEEEEEECCC------------C-CS-CSEEEECC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhhhh-------HH--hhCCEEEEEEcCCcchhHHHhHHHHH-hc-CCEEEEee
Confidence 1112233333347899999999996432211 11 13478899999865532211111111 11 23588899
Q ss_pred CCCCC
Q 015657 164 LDGDS 168 (403)
Q Consensus 164 ~D~~~ 168 (403)
+|...
T Consensus 222 ~Dl~~ 226 (349)
T 2www_A 222 SDGDL 226 (349)
T ss_dssp CSGGG
T ss_pred ecCCC
Confidence 99754
No 62
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.93 E-value=4.4e-09 Score=95.70 Aligned_cols=136 Identities=16% Similarity=0.222 Sum_probs=81.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC---CCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~---~~~~~~~~~~~ 89 (403)
.+..+++++|.+||||||++.+|+..+... ++|.+++.|+..+.....+. ..+..+...+. .........+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDAHMIYHR 102 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCHHHHHTT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeecccHHHHHH
Confidence 356789999999999999999999988655 88999999987643222221 22444333222 11112223333
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH-HHHhhhcCCeeEEEEccCCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~-~~~~~~~~~i~GvIlNk~D~~ 167 (403)
+. ...++|++||||+|.+..... + ...++.+++|+|+..+...... ...+ . ....+|+||+|..
T Consensus 103 ~~--~~~~~d~iiidt~G~~~~~~~-------~--~~~~~~~i~vvd~~~~~~~~~~~~~~~--~-~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 103 LK--KFSDCDLLLIENVGNLICPVD-------F--DLGENYRVVMVSVTEGDDVVEKHPEIF--R-VADLIVINKVALA 167 (221)
T ss_dssp GG--GGTTCSEEEEEEEEBSSGGGG-------C--CCSCSEEEEEEEGGGCTTHHHHCHHHH--H-TCSEEEEECGGGH
T ss_pred HH--hcCCCCEEEEeCCCCCCCCch-------h--ccccCcEEEEEeCCCcchhhhhhhhhh--h-cCCEEEEecccCC
Confidence 33 346899999999995321110 0 1234778999998654321111 1111 1 2345899999963
No 63
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.92 E-value=9.6e-09 Score=112.15 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=58.8
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHH-hhhcCCeeEEEEccCCCCCchhHH
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTT-FNIEIGITGAILTKLDGDSRGGAA 173 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~-~~~~~~i~GvIlNk~D~~~~~~~~ 173 (403)
.+|++||+++|++......-....++.+.++ .+|+||+|+..+- .+.-.... ....+.+.|||+|+.+.... ..+
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~-~~l 278 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNE-VPL 278 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTH-HHH
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHH-HHH
Confidence 7999999999987642111112256666666 7899999995442 22222222 24578899999998874322 222
Q ss_pred HHHHHHhCCCeEEeeccCCcCC
Q 015657 174 LSVKEVSGKPIKLVGRGERMED 195 (403)
Q Consensus 174 ~~~~~~~g~pi~fig~ge~v~~ 195 (403)
....+ .+.|+..+|..+..+.
T Consensus 279 ~~~l~-~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 279 TSYLR-NKVPVLVLPPVPKDPS 299 (831)
T ss_dssp HHHTT-TSSCEEEECCCCCCTT
T ss_pred HHHHH-hCCCceeeCCCCCCCH
Confidence 22221 1678877998887654
No 64
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.90 E-value=1.3e-08 Score=99.83 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=84.1
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------HHHHHHhhhccCCceEeCCCCC
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGEQVGVPVYTAGTEV 80 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------~~~l~~~~~~~gv~v~~~~~~~ 80 (403)
+.+.-.+..+++++|++||||||+...|+..+...+.+|.++..|+..... ...+.......+..+.......
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence 445556778999999999999999999999998888899999999754321 0000011111111111111111
Q ss_pred C---HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCee
Q 015657 81 K---PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT 157 (403)
Q Consensus 81 ~---~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~ 157 (403)
. ......+.+..+...++|++||||||.......+ . -..+-+++|+|+..+.+.........+ . ..
T Consensus 128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-------~--~~~d~vl~v~d~~~~~~~~~i~~~i~~-~-~~ 196 (337)
T 2qm8_A 128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV-------A--DLTDFFLVLMLPGAGDELQGIKKGIFE-L-AD 196 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-------H--TTSSEEEEEECSCC------CCTTHHH-H-CS
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-------H--hhCCEEEEEEcCCCcccHHHHHHHHhc-c-cc
Confidence 1 1222333343444579999999999986432211 1 134778888887544321111000111 1 23
Q ss_pred EEEEccCCCC
Q 015657 158 GAILTKLDGD 167 (403)
Q Consensus 158 GvIlNk~D~~ 167 (403)
-+++||+|..
T Consensus 197 ivvlNK~Dl~ 206 (337)
T 2qm8_A 197 MIAVNKADDG 206 (337)
T ss_dssp EEEEECCSTT
T ss_pred EEEEEchhcc
Confidence 4778999953
No 65
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.85 E-value=3.7e-08 Score=105.76 Aligned_cols=223 Identities=17% Similarity=0.145 Sum_probs=111.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH---HhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL---KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L---~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
.+.+.|+|+|++|+||||++..|.... .+.| +| |... ...+.. ......++.+...........
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g-~v-----~~g~-~~~D~~-~~E~~rgiTi~~~~~~~~~~~----- 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG-EV-----HDGA-ATMDWM-EQEQERGITITSAATTAFWSG----- 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc-cc-----CCCc-eeecCh-hhHHhcCceeeeceEEEEECC-----
Confidence 356789999999999999999997542 1222 11 1110 000110 011112222211100000000
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDG 166 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~ 166 (403)
. ......+++.||||||...+....... .. .+|.+++|+|+..+. ......... ...++ .-+|+||+|.
T Consensus 75 ~-~~~~~~~~i~liDTPG~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~ 146 (704)
T 2rdo_7 75 M-AKQYEPHRINIIDTPGHVDFTIEVERS----MR--VLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDR 146 (704)
T ss_pred c-cccCCceeEEEEeCCCccchHHHHHHH----HH--HCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCc
Confidence 0 011245899999999986543322222 22 248999999996542 112222211 22333 3488999996
Q ss_pred CC--chhHHHHHHHHhCCCeE----EeeccCCcCCCCCCCchhhhhhhc-----C------------CccHHHHHHHHHH
Q 015657 167 DS--RGGAALSVKEVSGKPIK----LVGRGERMEDLEPFYPDRMAGRIL-----G------------MGDVLSFVEKAQE 223 (403)
Q Consensus 167 ~~--~~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~~~~~~~r~l-----G------------~~dv~~l~e~~~e 223 (403)
.. .......+.+.++.++. +++.+..+..+. +...+..+.+ | ...+.++++.+.|
T Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~--dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e 224 (704)
T 2rdo_7 147 MGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVV--DLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIE 224 (704)
T ss_pred ccccHHHHHHHHHHHhCCCceeEEcccccccccccee--ehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHH
Confidence 53 23445566666665432 222222221100 0000000000 0 0122344555666
Q ss_pred HhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 224 VMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
.+.+.+++.+.+++...+++.+++...++.....|
T Consensus 225 ~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~ 259 (704)
T 2rdo_7 225 SAAEASEELMEKYLGGEELTEAEIKGALRQRVLNN 259 (704)
T ss_pred HHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 66666666666777777899999999998888765
No 66
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.78 E-value=9.8e-09 Score=94.94 Aligned_cols=87 Identities=22% Similarity=0.166 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC----CCCHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT----EVKPSQIAKQGLE 91 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~----~~~~~~~~~~~l~ 91 (403)
-.|++.|+||+||||++.++|..++++|++|++++.|++.......+..........++.... ......+ +
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~----L- 81 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDAL----L- 81 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHH----H-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHH----H-
Confidence 457888999999999999999999999999999999998766544432211111111111110 1111111 1
Q ss_pred HHHhCCCcEEEEeCCCCcc
Q 015657 92 EAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~ 110 (403)
...+|++|||++|..+
T Consensus 82 ---~~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 82 ---KAAPSLVLVDELAHTN 97 (228)
T ss_dssp ---HHCCSEEEESCTTCBC
T ss_pred ---hcCCCEEEEeCCCCCC
Confidence 1369999999999754
No 67
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.78 E-value=2.3e-07 Score=99.40 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=113.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 91 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~ 91 (403)
..+.+.|+++|.+|+||||++..|........... -++ .. ....+.. ......++.+.....
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g-~v~--~~-~~~~D~~-~~e~~~giTi~~~~~------------- 68 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG-ETH--EG-ASQMDWM-EQEQDRGITITSAAT------------- 68 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSEE-------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccc--CC-ceecccc-hhhhhcCceEeeeeE-------------
Confidence 34568899999999999999999875432211100 011 00 0000100 000111111110000
Q ss_pred HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.++.+.||||||...+.......+. .+|.+++|+|+..+ ........... ...+ .-+|+||+|...
T Consensus 69 ~~~~~~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~ 141 (693)
T 2xex_A 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLG 141 (693)
T ss_dssp EEEETTEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTT
T ss_pred EEEECCeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccc
Confidence 00124789999999998765444333222 24899999999543 12222222222 2233 448999999754
Q ss_pred c--hhHHHHHHHHhCCCeE----EeeccCCcCCCCCCC--------------------chhhhhhhcCCccHHHHHHHHH
Q 015657 169 R--GGAALSVKEVSGKPIK----LVGRGERMEDLEPFY--------------------PDRMAGRILGMGDVLSFVEKAQ 222 (403)
Q Consensus 169 ~--~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~--------------------~~~~~~r~lG~~dv~~l~e~~~ 222 (403)
. ...+..+.+.++.+.. .++.++.++.+.... |.++.+ .+..+++++.
T Consensus 142 ~~~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~e~~r~~l~ 215 (693)
T 2xex_A 142 ANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLD------RAEEARASLI 215 (693)
T ss_dssp CCHHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHH------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHH------HHHHHHHHHH
Confidence 3 2345566666775432 333333333211110 111111 1345566777
Q ss_pred HHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 223 EVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 223 e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
+.+.+++++.+.+++...+++.+++...++.....|
T Consensus 216 e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~ 251 (693)
T 2xex_A 216 EAVAETSDELMEKYLGDEEISVSELKEAIRQATTNV 251 (693)
T ss_dssp HHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 777777776677777777899999999998888766
No 68
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.73 E-value=1.7e-07 Score=100.67 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=114.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
+.|.|+|+|+.++||||++-.|.++-. +.| +|- +.+ ...|.. ......|+.+........- + -
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g-~v~--~~~----~~~D~~-~~E~eRGITI~s~~~s~~~----~--~ 77 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG-EVH--DGA----ATTDWM-VQEQERGITITSAAVTTFW----K--G 77 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEE----C--C
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc-eec--CCC----ccCCCh-HHHHHcCCeEEeeeEEEEe----c--c
Confidence 358999999999999999999987653 223 110 100 111111 1222334433221100000 0 0
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
...+.++|-+.||||||...+..++...|. + +|.+++|||+..| |+-.-.-.....++++ -+++||+|..
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr----~--~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr~ 150 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLR----V--LDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDRQ 150 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHH----H--CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSST
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHH----H--hCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEcccccc
Confidence 000013688999999999877555554443 3 2899999999655 2221111223445554 4899999965
Q ss_pred C--chhHHHHHHHHhCCCeE----EeeccCCcCCC---CCCCchhhhhhhcCC--------c----cHHHHHHHHHHHhh
Q 015657 168 S--RGGAALSVKEVSGKPIK----LVGRGERMEDL---EPFYPDRMAGRILGM--------G----DVLSFVEKAQEVMQ 226 (403)
Q Consensus 168 ~--~~~~~~~~~~~~g~pi~----fig~ge~v~~l---~~f~~~~~~~r~lG~--------~----dv~~l~e~~~e~~~ 226 (403)
. ......++...++..+. .++.++....+ ..+....|.+-..|. . ....+.+.+.+.+.
T Consensus 151 ~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 230 (709)
T 4fn5_A 151 GANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAA 230 (709)
T ss_dssp TCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHH
Confidence 3 33556677777776443 33433332110 000000000000000 0 11233444445555
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657 227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 259 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~ 259 (403)
+.+...+.+++..++++.+++...++.....+.
T Consensus 231 ~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (709)
T 4fn5_A 231 EANEELMNKYLEEGELSEAEIKEGLRLRTLACE 263 (709)
T ss_dssp TSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred hccHHHHHHHHhcCCccHHHHHHHHHHhhhhce
Confidence 556666777788889999999998887765553
No 69
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.71 E-value=1.9e-07 Score=99.94 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=111.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+.+.|+++|..|+||||++..|........... -++ .. ....+.. ......++.+..... .
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g-~v~--~~-~~~~d~~-~~E~~~giTi~~~~~-------------~ 71 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG-EVH--EG-AATMDFM-EQERERGITITAAVT-------------T 71 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CCEE-------------E
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc-eec--CC-ceeccCc-hhhhhcccccccceE-------------E
Confidence 3467899999999999999999975432110000 111 00 0011111 001111111110000 0
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~ 169 (403)
+.+.++.+.||||||...+.......+ . .+|.+++|+|+..+ .......... ...++ .-+|+||+|....
T Consensus 72 ~~~~~~~i~liDTPG~~df~~~~~~~l----~--~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 144 (691)
T 1dar_A 72 CFWKDHRINIIDTPGHVDFTIEVERSM----R--VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGA 144 (691)
T ss_dssp EEETTEEEEEECCCSSTTCHHHHHHHH----H--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC
T ss_pred EEECCeEEEEEECcCccchHHHHHHHH----H--HCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccC
Confidence 012478999999999865433222222 2 24899999999543 1222222222 22333 3488999997533
Q ss_pred --hhHHHHHHHHhCCCeE----EeeccCCcCCCCC--------CC------------chhhhhhhcCCccHHHHHHHHHH
Q 015657 170 --GGAALSVKEVSGKPIK----LVGRGERMEDLEP--------FY------------PDRMAGRILGMGDVLSFVEKAQE 223 (403)
Q Consensus 170 --~~~~~~~~~~~g~pi~----fig~ge~v~~l~~--------f~------------~~~~~~r~lG~~dv~~l~e~~~e 223 (403)
......+.+.++.+.. +++.+..+..+.. |. |..+.+ .+..+++++.+
T Consensus 145 ~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~r~~l~e 218 (691)
T 1dar_A 145 DLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLD------QAREYHEKLVE 218 (691)
T ss_dssp CHHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHH------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHH------HHHHHHHHHHH
Confidence 2344556666665432 3333333222110 00 111111 13456677777
Q ss_pred HhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 224 VMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
.+.+.+++.+.+++...+++.+++...++.....|
T Consensus 219 ~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~ 253 (691)
T 1dar_A 219 VAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253 (691)
T ss_dssp HHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 77777777777777777899999999998888765
No 70
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.69 E-value=1.1e-08 Score=106.85 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=82.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
.+.|.|+|+|+.++||||++-.|.++-. +.| .| =+.+..+....|.. ......|+.+.....
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G-~V--~~~~~~~~~~~D~~-~~EreRGITI~s~~~----------- 93 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAG-SV--KARKAARHATSDWM-AMERERGISVTTSVM----------- 93 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHH-HH--HHC---------------------CTTTEE-----------
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccc-ee--ecCccccccccCCh-HHHHHCCCcEeeceE-----------
Confidence 3579999999999999999999986532 111 00 00000000011111 122333444322211
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 167 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~~ 167 (403)
.+.+++|.+.||||||...+..++...|.. .|.+++|+|+..| +.....++......++ .-+++||+|..
T Consensus 94 --~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~------~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 94 --QFPYRDRVVNLLDTPGHQDFSEDTYRVLTA------VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp --EEEETTEEEEEECCCCGGGCSHHHHHHHHS------CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred --EEEECCEEEEEEeCCCcHHHHHHHHHHHHh------cCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 112578999999999998776666555433 3899999999655 2222333333222222 34799999965
Q ss_pred --CchhHHHHHHHHhCCCeE
Q 015657 168 --SRGGAALSVKEVSGKPIK 185 (403)
Q Consensus 168 --~~~~~~~~~~~~~g~pi~ 185 (403)
.....+.++.+.++..+.
T Consensus 166 ~ad~~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQIECA 185 (548)
T ss_dssp CCCHHHHHHHHHHHHTSEEE
T ss_pred hcchhHhhhhhhhhcCCceE
Confidence 334566778888887543
No 71
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.66 E-value=6.3e-08 Score=102.82 Aligned_cols=202 Identities=17% Similarity=0.167 Sum_probs=109.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCC--cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.|-|+|+|+.++||||++-.|.++-..-.. +| -+.+ ...|.. ......|+.+.......
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v--~~g~----~~~D~~-~~EreRGITI~s~~~~~------------ 62 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSV--DKGT----TRTDNT-LLERQRGITIQTGITSF------------ 62 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC--CCSC----CSTTCS-TTHHHHSSCSSCCCCCC------------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccc--ccCC----cccCCc-HHHHhCCCcEEeeeEEE------------
Confidence 466899999999999999999876653111 11 0111 011111 11223355444332221
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC--
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD-- 167 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~-- 167 (403)
.+++|.+.||||||...+..++...| ++ .|.+++|||+..| |+-...-......+++ -+++||+|..
T Consensus 63 -~~~~~~iNlIDTPGH~DF~~Ev~raL----~~--~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a 134 (638)
T 3j25_A 63 -QWENTKVNIIDTPGHMDFLAEVYRSL----SV--LDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGI 134 (638)
T ss_dssp -BCSSCBCCCEECCCSSSTHHHHHHHH----TT--CSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSC
T ss_pred -EECCEEEEEEECCCcHHHHHHHHHHH----HH--hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccC
Confidence 25789999999999887655544443 22 3899999999655 2211111122334444 4889999965
Q ss_pred CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657 168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF 247 (403)
Q Consensus 168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl 247 (403)
.......++.+.++.++.+....+...+... ....+ ....+.+. +.+++.+..++....++..++
T Consensus 135 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~e~~~----e~~d~l~e~~~~~~~~~~~~~ 199 (638)
T 3j25_A 135 DLSTVYQDIKEKLSAEIVIKQKVELYPNVCV----------TNFTE-SEQWDTVI----EGNDDLLEKYMSGKSLEALEL 199 (638)
T ss_dssp CSHHHHHHHHHTTCCCCCCCCCCCSCGGGCC----------CCCCC-HHHHHHHH----HHHCHHHHHHHHHCCCCSHHH
T ss_pred CHHHHHHHHHHHhCCCccccceeEeeccccc----------cccch-hhhhhhhh----cccHHHHhhhccCCccchHHH
Confidence 3445567777778776533222211111000 00111 12222222 233344555566667888887
Q ss_pred HHHHHHHHhcC
Q 015657 248 LKQTRTVARMG 258 (403)
Q Consensus 248 ~~ql~~~~k~g 258 (403)
...+......+
T Consensus 200 ~~~~~~~~~~~ 210 (638)
T 3j25_A 200 EQEESIRFQNC 210 (638)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHhhhhccc
Confidence 77766655444
No 72
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.57 E-value=1.5e-06 Score=85.18 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=103.7
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce--EeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v--~~~~~~~~~~~~~~~~l 90 (403)
+.+.++++|. ..+||||++..|...+.++|+++..+..- ..-.+ . ...+++. ...+. ....+...+
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg-----qtg~~-~--~~~gi~~Dav~~df---~aG~ve~~~ 219 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG-----QTGVM-L--EGDGVALDAVRVDF---AAGAVEQMV 219 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS-----HHHHH-H--HSCSCCGGGSBHHH---HHHHHHHHH
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc-----chhhh-h--hcCCcchhHHHHHH---HhhhHHHHH
Confidence 3678899999 99999999999999999999999876532 11111 1 1222221 11100 011223333
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cH-----------HHHHHHHHHh----h--
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TG-----------QEAAALVTTF----N-- 151 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g-----------~~~~~~~~~~----~-- 151 (403)
..+ .++||++||++.|++..... .....+.....|+.+++|.++. .. .+....+..+ +
T Consensus 220 ~~~-~~~~d~vlVEGqGgl~~P~~--~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~ 296 (349)
T 2obn_A 220 MRY-GKNYDILHIEGQGSLLHPGS--TATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAF 296 (349)
T ss_dssp HHH-TTTCSEEEECCCCCTTSTTC--CTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTS
T ss_pred HHh-ccCCCEEEEeCCCcccCcCh--HhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccC
Confidence 344 35899999999999875431 1224777788889999999972 22 4444444443 2
Q ss_pred hcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657 152 IEIGITGAILTKLDGDS--RGGAALSVKEVSGKPI 184 (403)
Q Consensus 152 ~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi 184 (403)
...++.|+++|..+.+. ....+..+.+.+|+|+
T Consensus 297 ~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv 331 (349)
T 2obn_A 297 GTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPC 331 (349)
T ss_dssp CCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence 56889999999987552 3356677888999999
No 73
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.42 E-value=2.9e-07 Score=95.61 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=73.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+.+.|+++|.+|+||||++.+|............+.+.+.++....+... .....|+.+..... .+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~-~E~~rGiTi~~~~~-------------~~ 77 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWME-MEKQRGISITTSVM-------------QF 77 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccch-hcccCCcceeeeEE-------------EE
Confidence 46789999999999999999887532221222223333333332222211 11122222110000 01
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCCch
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDSRG 170 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~~ 170 (403)
...++.+.||||||...+....... ...++.+++|+|+..+ ........... ..++ .-+++||+|.....
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~ 150 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYRT------LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD 150 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHG------GGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC
T ss_pred EECCeEEEEEECCCChhHHHHHHHH------HHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc
Confidence 1257899999999986543322221 2245899999999543 22222222222 2333 45899999975432
Q ss_pred --hHHHHHHHHhCCCeE
Q 015657 171 --GAALSVKEVSGKPIK 185 (403)
Q Consensus 171 --~~~~~~~~~~g~pi~ 185 (403)
.....+.+.++.++.
T Consensus 151 ~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 151 PMELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 345667777777543
No 74
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.42 E-value=7.5e-07 Score=81.05 Aligned_cols=137 Identities=19% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC--C--CCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--T--EVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~--~--~~~~~~~~~~ 88 (403)
.++..|+++|.+||||||++.+|+..+... +++.+++.|+..+...+.+ ...+..++..+ . ...... ..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~----~~~~~~~~~~~~~~~~~l~~~~-~~~ 109 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERM----EKHGAKVVPLNTGKECHLDAHL-VGH 109 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHH----HTTTCEEEEEECTTCSSCCHHH-HHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHH----HhcCCcEEEecCCceEeccHHH-HHH
Confidence 356778899999999999999999887655 7899999998754222222 12233333221 1 122222 233
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH-HHHHHhhhcCCeeEEEEccCCCC
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~-~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+..+...++|++++||+|.+..... + . ......+.|+|+..+.... .....+. ....+|+||+|..
T Consensus 110 ~~~~l~~~~~d~~~id~~g~i~~~~s-------~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 110 ALEDLNLDEIDLLFIENVGNLICPAD-------F-D-LGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLA 177 (226)
T ss_dssp HHTTSCGGGCSEEEEECCSCSSGGGG-------C-C-CSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGH
T ss_pred HHHHHhcCCCCEEEEeCCCCccCcch-------h-h-hccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccC
Confidence 34433334679999999996532111 0 1 1235567777753221110 0011111 2345899999964
No 75
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.41 E-value=2e-06 Score=81.27 Aligned_cols=136 Identities=21% Similarity=0.160 Sum_probs=77.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. |.+. .+... |. ..+...... +.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~~---~~-----------~t~~~~~~~---------------~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT------GLRQ-HVGNW---PG-----------VTVEKKEGI---------------ME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH------TTCE-EEEEC---TT-----------SSCEEEEEE---------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CC-----------eEEEeeEEE---------------EE
Confidence 4568999999999999998886 4433 12111 00 111111100 01
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-CeeEEEEccCCCCC---
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDS--- 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-~i~GvIlNk~D~~~--- 168 (403)
..++.+.|+||||..........+. ......-.++.+++|+|+..............+.. ...-+|+||+|...
T Consensus 47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 2456799999999775432222211 11222235789999999977654444443333222 33458999999321
Q ss_pred chhHHHHHHHHhCCCeEE
Q 015657 169 RGGAALSVKEVSGKPIKL 186 (403)
Q Consensus 169 ~~~~~~~~~~~~g~pi~f 186 (403)
.......+.+.+|+|+.+
T Consensus 127 ~~~~~~~l~~~lg~~~~~ 144 (271)
T 3k53_A 127 AKIDIKKMRKELGVPVIP 144 (271)
T ss_dssp CCCCHHHHHHHHSSCEEE
T ss_pred cHHHHHHHHHHcCCcEEE
Confidence 111255677788988843
No 76
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.40 E-value=2.5e-06 Score=80.26 Aligned_cols=136 Identities=18% Similarity=0.085 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+||||||+...|. |.+.. +..- |.. .+...... +...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~~---pg~-----------Tv~~~~~~---------------~~~~ 46 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT------NANQR-VGNW---PGV-----------TVEKKTGE---------------FLLG 46 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEE-EEEC---TTS-----------SSEEEEEE---------------EEET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCCC-ccCC---CCc-----------eEEEEEEE---------------EEEC
Confidence 47899999999999998886 44432 1111 110 11111000 0014
Q ss_pred CCcEEEEeCCCCccccHH----hHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKA----MMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~----l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~- 169 (403)
+.++.|+||||....... ...+ + ......-.++.+++|+|+............+.+.-...-+|+||+|....
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 568999999998654321 1111 1 11222245799999999977655555444444333345589999995322
Q ss_pred --hhHHHHHHHHhCCCeEEee
Q 015657 170 --GGAALSVKEVSGKPIKLVG 188 (403)
Q Consensus 170 --~~~~~~~~~~~g~pi~fig 188 (403)
......+.+.+|+|+.++.
T Consensus 127 ~~~~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 127 GISIDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp TCEECHHHHHHHHCSCEEECB
T ss_pred CcHHHHHHHHHHcCCCEEEEE
Confidence 1234556777899985543
No 77
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.40 E-value=5.6e-07 Score=79.59 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.+.+++++|.+||||||++.+|+..|..+|++|.++..|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 46789999999999999999999999999999999998875
No 78
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=5.2e-06 Score=88.49 Aligned_cols=211 Identities=18% Similarity=0.175 Sum_probs=112.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh---CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~---~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~ 89 (403)
.+.+.++++|..|+||||++..|+..... .| .| .+..... .. .... . ..++.+......
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~-d~-~~~e-~--~~giti~~~~~~---------- 68 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTT-DY-TPEA-K--LHRTTVRTGVAP---------- 68 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSS-CC-SHHH-H--HTTSCCSCEEEE----------
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccc-cC-CHHH-H--hcCCeEEecceE----------
Confidence 35678999999999999999999865432 22 22 1111000 00 0110 0 112211110000
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCC
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDG 166 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~ 166 (403)
+.+..+.+.|+||||...+..... .... ..+.+++|+|+..+ ........... ..+.+ -+|+||+|.
T Consensus 69 ---~~~~~~~~nliDTpG~~~f~~~~~----~~l~--~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~-ilv~NKiD~ 138 (665)
T 2dy1_A 69 ---LLFRGHRVFLLDAPGYGDFVGEIR----GALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDK 138 (665)
T ss_dssp ---EEETTEEEEEEECCCSGGGHHHHH----HHHH--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred ---EeeCCEEEEEEeCCCccchHHHHH----HHHh--hcCcEEEEEcCCcccchhHHHHHHHHHHccCCE-EEEecCCch
Confidence 012467899999999764432222 2222 24889999998543 22222222222 23333 388999997
Q ss_pred CCc-hhHHHHHHHHhCCCeE----EeeccCCcCCCCC--------C---------CchhhhhhhcCCccHHHHHHHHHHH
Q 015657 167 DSR-GGAALSVKEVSGKPIK----LVGRGERMEDLEP--------F---------YPDRMAGRILGMGDVLSFVEKAQEV 224 (403)
Q Consensus 167 ~~~-~~~~~~~~~~~g~pi~----fig~ge~v~~l~~--------f---------~~~~~~~r~lG~~dv~~l~e~~~e~ 224 (403)
... ...+..+.+.++ .+. +++.+..+..+.. | .|.++.+ .+...++++.+.
T Consensus 139 ~~~~~~~~~~l~~~l~-~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~r~~l~e~ 211 (665)
T 2dy1_A 139 GGDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE------RVQRFRQEVLEA 211 (665)
T ss_dssp CCCHHHHHHHHHHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhC-CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHH------HHHHHHHHHHHH
Confidence 522 234455666666 221 2333222221100 0 0112211 134556667777
Q ss_pred hhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657 225 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 258 (403)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g 258 (403)
+.+.+++.+.+.+...+++.+++...++.....|
T Consensus 212 ~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~ 245 (665)
T 2dy1_A 212 IVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRG 245 (665)
T ss_dssp HHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 7666666677777777899999999998887766
No 79
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.36 E-value=2.1e-06 Score=82.91 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++-.|+++|.+||||||+...|. |.++.++...++... ... ..++.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~tT~--------~~~--~~~~~----------------- 54 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGTTR--------MRV--LGVKN----------------- 54 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCCCC--------SCE--EEEEE-----------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCcee--------eEE--EEEEe-----------------
Confidence 455788999999999999998886 555543332211100 000 01111
Q ss_pred HHhC-CCcEEEEeCCCCcccc------HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHH-HHHhhhcCCeeEEEEc
Q 015657 93 AKKK-NVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL-VTTFNIEIGITGAILT 162 (403)
Q Consensus 93 ~~~~-~~D~VIIDtpg~l~~d------~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~-~~~~~~~~~i~GvIlN 162 (403)
.. +++++|+||||..... ..+........ -.+|.+++|+|+... ...... ...+...-...-+|+|
T Consensus 55 --~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~N 130 (308)
T 3iev_A 55 --IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN 130 (308)
T ss_dssp --ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred --cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEE
Confidence 13 7899999999986533 22222222221 245899999999533 222333 3333332223458999
Q ss_pred cCCCC
Q 015657 163 KLDGD 167 (403)
Q Consensus 163 k~D~~ 167 (403)
|+|..
T Consensus 131 K~Dl~ 135 (308)
T 3iev_A 131 KIDKI 135 (308)
T ss_dssp CGGGS
T ss_pred CccCC
Confidence 99975
No 80
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.27 E-value=7.6e-06 Score=77.58 Aligned_cols=137 Identities=18% Similarity=0.092 Sum_probs=77.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. |.+. .+... |.. .+...... +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~~-~v~~~---~g~-----------t~~~~~~~---------------~~ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSRQ-RVGNW---AGV-----------TVERKEGQ---------------FS 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTCE-EEEEC---TTS-----------SSEEEEEE---------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CCe-----------eEEEEEEE---------------EE
Confidence 3568899999999999998886 4443 22211 110 01111000 00
Q ss_pred hCCCcEEEEeCCCCccccH-----HhHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDK-----AMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~-----~l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..++.+.|+||||...... .+...+ ..+...-.++.+++|+|+............+.+.-...-+|+||+|...
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1457899999999765431 111111 1122223578999999997655444444333332233458999999532
Q ss_pred ch---hHHHHHHHHhCCCeEEe
Q 015657 169 RG---GAALSVKEVSGKPIKLV 187 (403)
Q Consensus 169 ~~---~~~~~~~~~~g~pi~fi 187 (403)
.. .....+.+.+|+|+.++
T Consensus 127 ~~~~~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 127 KQNIRIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HTTEEECHHHHHHHHTSCEEEC
T ss_pred hhhHHHHHHHHHHhcCCCEEEE
Confidence 21 23455677788888544
No 81
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.26 E-value=5e-07 Score=93.78 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=77.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+.+.|+|+|.+|+||||++..|+.+-.... +..-++. +..+....+.. ......|+.+..... .
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~-~~g~v~~~~~~~~~~~d~~-~~e~~~GiTi~~~~~-------------~ 76 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQ-LAGTIKSRKAARHATSDWM-ELEKQRGISVTTSVM-------------Q 76 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHH-HHHHHHTC----CCHHHHH-HHHHHHCCSSSSSEE-------------E
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcc-cceeeeccccccceecccc-hhhhcCCeeEEEeEE-------------E
Confidence 467899999999999999999864321100 0000000 00011111111 111122332211100 0
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~- 169 (403)
+...++.+.||||||...+....... ...++.+++|+|+..+ .............-...-+|+||+|....
T Consensus 77 ~~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 77 FPYKDYLINLLDTPGHADFTEDTYRT------LTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp EEETTEEEEEECCCCSTTCCHHHHHG------GGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred EEeCCEEEEEEECCCchhHHHHHHHH------HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 01357899999999986554332222 1235899999999643 22222222222221234589999997532
Q ss_pred -hhHHHHHHHHhCCCeE
Q 015657 170 -GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 -~~~~~~~~~~~g~pi~ 185 (403)
...+..+.+.++.++.
T Consensus 151 ~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 151 SIELLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhhCCCce
Confidence 2445667777877543
No 82
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.21 E-value=5e-06 Score=78.13 Aligned_cols=40 Identities=38% Similarity=0.612 Sum_probs=35.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
++.+|+++|.+||||||++..|+..|...|+.+++++.|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 4678999999999999999999999988899988788873
No 83
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.21 E-value=6.2e-06 Score=77.57 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=76.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. |.+.. +..- |+. .+...... +.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~~~---pg~-----------tv~~~~~~---------------~~ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT------GTKQY-VANW---PGV-----------TVEKKEGV---------------FT 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TTCEE-EEEC---TTS-----------CCEEEEEE---------------EE
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccCC---CCc-----------eEEEEEEE---------------EE
Confidence 3458899999999999998886 44432 1110 110 01111000 00
Q ss_pred hCCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch--
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG-- 170 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~-- 170 (403)
..++.+.|+||||..........+ + ..+...-.++.+++|+|+...+........+.+.-...-+|+||+|.....
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccch
Confidence 146789999999986542211111 1 122222357899999999765554444433333223345899999953211
Q ss_pred -hHHHHHHHHhCCCeEEe
Q 015657 171 -GAALSVKEVSGKPIKLV 187 (403)
Q Consensus 171 -~~~~~~~~~~g~pi~fi 187 (403)
.....+.+.+|+|+.++
T Consensus 129 ~~~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 129 KIDRYELQKHLGIPVVFT 146 (258)
T ss_dssp CBCHHHHHHHHCSCEEEC
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 12456677788888443
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.20 E-value=1.4e-05 Score=72.05 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+..+++++|++|+||||++..|+. ..|.+|++++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 357899999999999999999998 5688999999886
No 85
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.20 E-value=2.3e-05 Score=77.10 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=72.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..++++|.+||||||+...|+ |..+. +...++. ...+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~~~------------t~~~~~~~~----------------- 209 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYPFT------------TRGINVGQF----------------- 209 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCTTC------------SSCEEEEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCCCe------------eeceeEEEE-----------------
Confidence 45678999999999999998886 33332 1111110 000111100
Q ss_pred HhCCCcEEEEeCCCCccccH----Hh-HHHHHHHhhhcCCceEEEEEeccc-----HHHHHHHHHHhhhc--CCeeEEEE
Q 015657 94 KKKNVDVVIVDTAGRLQIDK----AM-MDELKDVKRVLNPTEVLLVVDAMT-----GQEAAALVTTFNIE--IGITGAIL 161 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~----~l-~~el~~i~~~~~~~~vllVvda~~-----g~~~~~~~~~~~~~--~~i~GvIl 161 (403)
...++++.++||||...... .. ...+.. ....++.+++|+|+.. ..........+... -...-+|+
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILA--LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG--GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EecCceEEEEeCCCccccchhhhhHHHHHHHHH--HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01356899999999864311 01 111111 1224688999999743 23333333333221 12344889
Q ss_pred ccCCCCCchhH--HHHHHHHhCCCeEEee
Q 015657 162 TKLDGDSRGGA--ALSVKEVSGKPIKLVG 188 (403)
Q Consensus 162 Nk~D~~~~~~~--~~~~~~~~g~pi~fig 188 (403)
||+|....... +.......+.|+.+++
T Consensus 288 NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 288 NKIDVADEENIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred ECcccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 99998754432 2333334566664444
No 86
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.18 E-value=3.2e-05 Score=70.78 Aligned_cols=41 Identities=32% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+..+++++|++|+||||++.+++..+...|.+|++++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 35789999999999999999999999988999999998854
No 87
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.14 E-value=1.3e-05 Score=79.27 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=58.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+..++.|+|.+|+||||+|.+++..+++.|.+|++++++....... ....+.. .++.+... ... +.+...+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~~g~d~~~l~i~~~---~~~-e~~l~~l~~ 146 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARALGVNTDELLVSQP---DNG-EQALEIMEL 146 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHHTTCCGGGCEEECC---SSH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHHcCCCHHHceeecC---CcH-HHHHHHHHH
Confidence 3578899999999999999999999999999999999985322111 1111110 11122211 122 333333333
Q ss_pred H-HhCCCcEEEEeCCCCcc
Q 015657 93 A-KKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 93 ~-~~~~~D~VIIDtpg~l~ 110 (403)
+ +...+++||||+...+.
T Consensus 147 l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHTTTCCSEEEEECTTTCC
T ss_pred HHhcCCCCEEEEeChHHhc
Confidence 3 23579999999988764
No 88
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.13 E-value=1.5e-05 Score=76.63 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=65.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+||||||+...|. |.++.++...++ .. ...+..+. ..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~~~---tT--------r~~i~~i~------------------~~ 52 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISPRPQ---TT--------RKRLRGIL------------------TE 52 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSC---CC--------CSCEEEEE------------------EE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCceeeecCCCC---ce--------eEEEEEEE------------------Ee
Confidence 458999999999999998887 555533322111 10 00011010 02
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEecccH--HHHHHHHHHhhhc--CCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIE--IGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~--~~i~GvIlNk~D~~~~ 169 (403)
.++.++|+||||.......+...+.. ....-.++.+++|+|+... .........+... -.+.-+|+||+|....
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 46789999999976432211111111 1122346889999998532 2212222223221 2234589999997644
Q ss_pred h
Q 015657 170 G 170 (403)
Q Consensus 170 ~ 170 (403)
.
T Consensus 133 ~ 133 (301)
T 1wf3_A 133 P 133 (301)
T ss_dssp H
T ss_pred h
Confidence 3
No 89
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.12 E-value=1.5e-05 Score=76.70 Aligned_cols=121 Identities=19% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+...++++|.+|+||||+...|. |.++.++...++ . +.....+ ++.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~~~---t-----Tr~~~~g--i~~----------------- 52 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQ---T-----TRHRIVG--IHT----------------- 52 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHH------TCSEEECCCCSS---C-----CSSCEEE--EEE-----------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH------CCCccccCCCCC---c-----ceeeEEE--EEE-----------------
Confidence 345679999999999999998888 667755432221 1 0000011 111
Q ss_pred HHhCCCcEEEEeCCCCc-cccHHhHHHHHH-Hhhhc-CCceEEEEEecccH-HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 93 AKKKNVDVVIVDTAGRL-QIDKAMMDELKD-VKRVL-NPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l-~~d~~l~~el~~-i~~~~-~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
..++.++++||||.. .....+-..+.. ....+ ..+.+++|+|+..- ......+..+...-.+.-+|+||+|...
T Consensus 53 --~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 53 --EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp --ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred --ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 246789999999975 211111111111 11111 34667888998321 1111222233322233458889999865
No 90
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.11 E-value=6.9e-06 Score=80.99 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-CCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+..++.|.|++|+||||++..++..++..|.+|++|++....... ....++-.. ++.+.. .....+.+..+-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~---~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQ---PDHGEQALEIVDEL 134 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEEC---CSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhh---ccCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999987432111 111121111 111221 12233333322222
Q ss_pred HHhCCCcEEEEeCCCCcc
Q 015657 93 AKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~ 110 (403)
++...+|++|||+...+.
T Consensus 135 ~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHTSCCSEEEEECTTTCC
T ss_pred hhhcCCCeEEehHhhhhc
Confidence 334679999999977664
No 91
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.10 E-value=7.2e-06 Score=80.93 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=58.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh-ccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-QVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~-~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+.+++.++|++|+||||+|.+++..+++.|.+|++++++...... ....++. ..++.++.. ...+.+.+.+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~--~a~~~g~~~~~l~i~~~----~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQP----DTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCEEECC----SSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH--HHHHcCCChhheeeeCC----CCHHHHHHHHHH
Confidence 457899999999999999999999999999999999986322111 1111111 111222211 122333333333
Q ss_pred H-HhCCCcEEEEeCCCCcc
Q 015657 93 A-KKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 93 ~-~~~~~D~VIIDtpg~l~ 110 (403)
+ +..++|+||||+...+.
T Consensus 136 l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHTCCSEEEEECGGGCC
T ss_pred HHhccCCCEEEEcCHHHhc
Confidence 3 24689999999988765
No 92
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.10 E-value=5.2e-05 Score=73.30 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CC---CCCCHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AG---TEVKPSQIAKQ 88 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~---~~~~~~~~~~~ 88 (403)
+..+++++|.+|+||||++.++|..++.+|.+|+++++..........+. +...+++... .+ ........+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~--~~~~~i~~~~l~~~~~~l~~~~~~~l~~ 144 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWGKLSM 144 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHH--HHHTTCCHHHHHSCHHHHCSSCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcCCCCCCHHHHHHHHH
Confidence 45789999999999999999999999998999999998844333222221 1122333110 00 00111233444
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
+...+. ...+.|.|+++ ... ..+...+..+.....+.+.++|+|.
T Consensus 145 a~~~l~--~~~i~i~d~~~-~~~-~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 145 AIGEIS--NSNINIFDKAG-QSV-NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHH--TSCEEEECCSC-CBH-HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHh--CCCEEEECCCC-CCH-HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 455552 45677777765 222 2333334444433344555888887
No 93
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.08 E-value=2e-05 Score=73.37 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++..|+++|.+||||||+...|. |.++......+ .+..........
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~~-----------~~~T~~~~~~~~---------------- 65 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSIL------GQRRFFSRLGA-----------TSVTRACTTGSR---------------- 65 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHH------TSCCC--------------------CCSCEEEEE----------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHh------CCCCccccCCC-----------CCccccEEEEEE----------------
Confidence 345668999999999999998876 44443221110 000000000000
Q ss_pred HHhCCCcEEEEeCCCCccccHH----hHHHHHHH--hhhcCCceEEEEEecccH-H---HHHHHHHH-hhhc--CCeeEE
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKA----MMDELKDV--KRVLNPTEVLLVVDAMTG-Q---EAAALVTT-FNIE--IGITGA 159 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~----l~~el~~i--~~~~~~~~vllVvda~~g-~---~~~~~~~~-~~~~--~~i~Gv 159 (403)
...+..++|+||||....... ...++... .....++.+++|+|+... . .+...+.. |... -...-+
T Consensus 66 -~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 66 -RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp -EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred -EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 024678999999998643211 12222211 112456889999998421 1 22222222 3221 123457
Q ss_pred EEccCCCCCch----------hHHHHHHHHhCCCe
Q 015657 160 ILTKLDGDSRG----------GAALSVKEVSGKPI 184 (403)
Q Consensus 160 IlNk~D~~~~~----------~~~~~~~~~~g~pi 184 (403)
+.||.|..... ..+..+.+.+|.++
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 88999964321 22455566666655
No 94
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.06 E-value=0.00048 Score=62.56 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=60.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
....|+++|.+||||||+...|. +.+.. +. + + +.. . . .+.+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~-~-~-~~~-----t--~--~~~~~~~----------------- 71 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQ-S-Y-SFT-----T--K--NLYVGHF----------------- 71 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EE-C-C---------------CEEEEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cC-C-C-CCc-----c--e--eeeeeee-----------------
Confidence 34668999999999999998776 33432 11 1 1 000 0 0 0111000
Q ss_pred HhCCCcEEEEeCCCCcccc--HH---hHHHHHHHhhhcCCceEEEEEecccH-----HHHHHHHHHhhhc--CCeeEEEE
Q 015657 94 KKKNVDVVIVDTAGRLQID--KA---MMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIE--IGITGAIL 161 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d--~~---l~~el~~i~~~~~~~~vllVvda~~g-----~~~~~~~~~~~~~--~~i~GvIl 161 (403)
...++.+.|+||||..... .. ....+..+ .-.++.+++|+|+... ......+..+... -...-+|+
T Consensus 72 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~ 149 (228)
T 2qu8_A 72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF 149 (228)
T ss_dssp EETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred ecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence 0135789999999985321 10 01222222 2234788999998532 2222333333331 22345899
Q ss_pred ccCCCC
Q 015657 162 TKLDGD 167 (403)
Q Consensus 162 Nk~D~~ 167 (403)
||+|..
T Consensus 150 nK~Dl~ 155 (228)
T 2qu8_A 150 NKIDKC 155 (228)
T ss_dssp ECGGGC
T ss_pred eCcccC
Confidence 999964
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.05 E-value=1.8e-05 Score=68.30 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc---h
Q 015657 96 KNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR---G 170 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~---~ 170 (403)
.++.+.|+||||....... ....+ ........++.+++|+|+............+...-...-+|.||+|.... .
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh
Confidence 3567999999997653211 00111 11112225688999999976544333333333222234588999995311 1
Q ss_pred hHHHHHHHHhCCCe
Q 015657 171 GAALSVKEVSGKPI 184 (403)
Q Consensus 171 ~~~~~~~~~~g~pi 184 (403)
.....+.+..+.|+
T Consensus 128 ~~~~~~~~~~~~~~ 141 (165)
T 2wji_A 128 IDVDKLEKILGVKV 141 (165)
T ss_dssp CCHHHHHHHHTSCE
T ss_pred hHHHHHHHHhCCCE
Confidence 12345556667665
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=3e-05 Score=70.15 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+..+++++|++|+||||++..|+..+...+.+|++++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 34789999999999999999999888877889999998764
No 97
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=3.1e-05 Score=67.73 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=72.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++..|+++|.+||||||+...|+ +.+.. +. + .|. ..+...... +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~-~--~~~-----------~t~~~~~~~---------------~ 49 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT------GENVY-IG-N--WPG-----------VTVEKKEGE---------------F 49 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH------TTCEE-EE-E--CTT-----------SCCEEEEEE---------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCcc-cc-C--CCC-----------eeccceEEE---------------E
Confidence 34678999999999999998876 33321 11 0 010 001111000 0
Q ss_pred HhCCCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc--
Q 015657 94 KKKNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR-- 169 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~-- 169 (403)
...++.+.|+||||....... ....+ ..+.....++.+++|+|+...+........+...-...-+|.||+|....
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT
T ss_pred EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccccc
Confidence 013578999999997654210 00011 11112123588899999976544444333333222234488999995321
Q ss_pred -hhHHHHHHHHhCCCeE
Q 015657 170 -GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 -~~~~~~~~~~~g~pi~ 185 (403)
...+..+.+..+.++.
T Consensus 130 ~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 130 IEIDVDKLEKILGVKVV 146 (188)
T ss_dssp CCCCHHHHHHHHTSCEE
T ss_pred chHHHHHHHHHhCCCeE
Confidence 1234556666777663
No 98
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.04 E-value=1.8e-05 Score=75.03 Aligned_cols=136 Identities=24% Similarity=0.173 Sum_probs=74.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. |.+.. +. + .| |+.+...... +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~-~--~p-------------g~tv~~~~~~-------------~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VG-N--WP-------------GVTVERKSGL-------------VK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-CC-S--SS-------------CCCCSCEEEE-------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-cc-C--CC-------------CCcEEEEEEE-------------Ee
Confidence 3568999999999999998886 43210 00 0 01 1111000000 01
Q ss_pred hCCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc---
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR--- 169 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~--- 169 (403)
. ++++.|+||||..........+ + ......-.++.+++|+|++..+........+.+.-.+.-+++||+|....
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc
Confidence 2 5689999999976542111111 1 11122124788999999977655444433333322234588999995321
Q ss_pred hhHHHHHHHHhCCCeEEe
Q 015657 170 GGAALSVKEVSGKPIKLV 187 (403)
Q Consensus 170 ~~~~~~~~~~~g~pi~fi 187 (403)
......+.+.+|+|+..+
T Consensus 126 ~~~~~~l~~~lg~~vi~~ 143 (272)
T 3b1v_A 126 KINVDKLSYHLGVPVVAT 143 (272)
T ss_dssp CCCHHHHHHHHTSCEEEC
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 123455666788887444
No 99
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.01 E-value=1.5e-05 Score=74.39 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+...|+++|.+||||||+...|.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999998886
No 100
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.7e-05 Score=68.51 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHH---hhh-------cCCeeEEEEccC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTT---FNI-------EIGITGAILTKL 164 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~---~~~-------~~~i~GvIlNk~ 164 (403)
..+.+.|+||||...........+.... -.++.+++|+|+. ........... +.. .-...-+|+||+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 166 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHG--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhc--ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEch
Confidence 4678999999997654322222222111 1247889999997 44333322221 110 112344888999
Q ss_pred CCC
Q 015657 165 DGD 167 (403)
Q Consensus 165 D~~ 167 (403)
|..
T Consensus 167 Dl~ 169 (193)
T 2ged_A 167 ELF 169 (193)
T ss_dssp TST
T ss_pred Hhc
Confidence 964
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.99 E-value=6.8e-05 Score=63.35 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---Hhhhc-CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIE-IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~-~~i~GvIlNk~D~~~ 168 (403)
..+++.|+||||....... .. .... ..+.+++|+|......... ... .+... -...-+|+||+|...
T Consensus 49 ~~~~~~~~D~~G~~~~~~~-~~---~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAM-RD---QYMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEEECCCCSSCCHH-HH---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEEECCCchhhhHH-HH---Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 3578899999997543221 11 1111 2478899999865432222 122 22211 123458999999643
Q ss_pred c---hhHHHHHHHHhCCCeEE
Q 015657 169 R---GGAALSVKEVSGKPIKL 186 (403)
Q Consensus 169 ~---~~~~~~~~~~~g~pi~f 186 (403)
. ...+..+.+..+.|+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 2ce2_X 123 RTVESRQAQDLARSYGIPYIE 143 (166)
T ss_dssp CCSCHHHHHHHHHHHTCCEEE
T ss_pred cccCHHHHHHHHHHcCCeEEE
Confidence 2 33445566677877643
No 102
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.99 E-value=3.4e-05 Score=77.13 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+...|+++|..|+||||++..|...+.+.|+.... + .....+... .....|+.+..... .+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~---~--~~~~~d~~~-~e~~~GiTi~~~~~-------------~~ 70 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEV---K--DYGDIDKAP-EERARGITINTAHV-------------EY 70 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCC---C--CHHHHSCSH-HHHHHTCCCSCEEE-------------EE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccc---c--chhhccCCH-HHHHcCCCEEeeee-------------Ee
Confidence 44668999999999999999999887777642100 0 000011000 00111221100000 00
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
...++.+.|+||||...+...+ .. ....+|.+++|+|+..+ ......+.... ..++..-+++||+|...
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~~~----~~--~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIKNM----IT--GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHHHH----HH--HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred ccCCeEEEEEECCChHHHHHHH----HH--HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 1246889999999975432221 11 12346899999999543 22222222221 12332347899999753
No 103
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=3.5e-05 Score=75.75 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+..++.+.|++|+||||++.+++..+.+.|.+|++++++...... ....++-. .++.+.. .....+.+ +.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~lG~~~~~l~i~~---~~~~e~~l-~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKLGVDTDSLLVSQ---PDTGEQAL-EIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCEEEC---CSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHcCCCHHHeEEec---CCCHHHHH-HHHHH
Confidence 457899999999999999999999999999999999988432111 11111110 1122221 11222222 23332
Q ss_pred H-HhCCCcEEEEeCCCCcc
Q 015657 93 A-KKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 93 ~-~~~~~D~VIIDtpg~l~ 110 (403)
+ ...++++||||.+..+.
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 2 23569999999988764
No 104
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.99 E-value=5.5e-05 Score=74.29 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCccc-----cHHhHHHHHHHh--hhcCCceEEEEEecc----cHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 97 NVDVVIVDTAGRLQI-----DKAMMDELKDVK--RVLNPTEVLLVVDAM----TGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~-----d~~l~~el~~i~--~~~~~~~vllVvda~----~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
..++.|+||||.... .......+..+. ..-.++.+++|+++. ..++....+..+.......-+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 468999999997653 111111111111 123578888888863 224445566666554444568999999
Q ss_pred CCCch
Q 015657 166 GDSRG 170 (403)
Q Consensus 166 ~~~~~ 170 (403)
.....
T Consensus 215 l~~~~ 219 (360)
T 3t34_A 215 LMDKG 219 (360)
T ss_dssp GCCTT
T ss_pred cCCCc
Confidence 65433
No 105
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.98 E-value=5.1e-05 Score=69.83 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=68.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
....|+++|.+||||||+...|. |.++. .. ..+.. ... ........
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~------g~~~~--~~--~~~~~-----~~t--~~~~~~~~----------------- 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL------GRKVF--HS--GTAAK-----SIT--KKCEKRSS----------------- 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------TSCCS--CC--------------C--CSCEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHc------CCCcC--cc--CCCCC-----cee--eeEEEEEE-----------------
Confidence 34668999999999999998877 43331 00 00000 000 00100000
Q ss_pred HhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhh--cCCceEEEEEeccc--HH--HHHHHH-HHhhhc-CCeeEEEEc
Q 015657 94 KKKNVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT--GQ--EAAALV-TTFNIE-IGITGAILT 162 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~--~~~~~vllVvda~~--g~--~~~~~~-~~~~~~-~~i~GvIlN 162 (403)
...+..+.|+||||..... .....++...... ..++.+++|+|+.. .. .....+ ..+... ....-+|+|
T Consensus 74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 0245689999999976431 2222233332222 24588999999732 11 122211 223222 224558999
Q ss_pred cCCCCCch----------hHHHHHHHHhCCCe
Q 015657 163 KLDGDSRG----------GAALSVKEVSGKPI 184 (403)
Q Consensus 163 k~D~~~~~----------~~~~~~~~~~g~pi 184 (403)
|+|..... ..+..+.+.++.++
T Consensus 154 K~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~ 185 (239)
T 3lxx_A 154 RKDDLGDTNLHDYLREAPEDIQDLMDIFGDRY 185 (239)
T ss_dssp CGGGC------------CHHHHHHHHHHSSSE
T ss_pred CCccCCcccHHHHHHhchHHHHHHHHHcCCEE
Confidence 99953221 23455556666554
No 106
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.98 E-value=9.1e-05 Score=75.13 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CC---CCCCHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AG---TEVKPSQIAKQ 88 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~---~~~~~~~~~~~ 88 (403)
+..+++++|.+|+||||++.++|...+.+|.+|+++++..........+. +...+++... .+ ........+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~--~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH--HHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 45789999999999999999999999988999999999865444333321 2222333111 00 11112233444
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 137 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda 137 (403)
+...+. ...+.|.|+|+ +.. ..+...+..+.....++..++|||.
T Consensus 274 a~~~l~--~~~l~i~d~~~-~s~-~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAG-QSV-NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHH--TSCEEEECCSS-CBH-HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHh--cCCEEEECCCC-CCH-HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 555553 45677777765 322 2233333444333344555888887
No 107
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.96 E-value=4.9e-05 Score=64.84 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||......... .. .-.++.+++|+|+....... .....+.. .-...-+|+||+|...+
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITT----AY--YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCH----HH--HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred EEEEEEEeCCCChhhhhhHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc
Confidence 46899999999643221111 11 12347889999986553322 11222211 12234589999997432
Q ss_pred --hhHHHHHHHHhCCCeE
Q 015657 170 --GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 --~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 125 VTADQGEALAKELGIPFI 142 (170)
T ss_dssp SCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHcCCeEE
Confidence 2334555666777763
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=3.8e-05 Score=67.42 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D 52 (403)
+...++++|++|+||||++..++..+. ..|..|..+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357889999999999999999999997 779888877754
No 109
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.89 E-value=7.5e-05 Score=71.41 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCcccc---------HHhHHHHHHHhhhcCCceEEEEEec-ccH---HHHHHHHHHhhhcCCeeEEEEcc
Q 015657 97 NVDVVIVDTAGRLQID---------KAMMDELKDVKRVLNPTEVLLVVDA-MTG---QEAAALVTTFNIEIGITGAILTK 163 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d---------~~l~~el~~i~~~~~~~~vllVvda-~~g---~~~~~~~~~~~~~~~i~GvIlNk 163 (403)
.++++|+||||..... ..+..... ...-.++.+++|+|+ ..+ .+....+..+...-...-+|+||
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVM--AYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK 207 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHH--HHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHH--HHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcC
Confidence 4789999999976311 11111111 112245788999987 222 22233444444333345589999
Q ss_pred CCCCCch
Q 015657 164 LDGDSRG 170 (403)
Q Consensus 164 ~D~~~~~ 170 (403)
+|.....
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9975433
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.88 E-value=7.3e-05 Score=63.24 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
.+..+.|+||||..... ......... ....++.+++|+|+... .........+...-...-+|+||+|....
T Consensus 47 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 47 DRGRFLLVDTGGLWSGDKWEKKIQEKVDR--ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp TTEEEEEEECGGGCSSSSCCHHHHHHHHH--HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred CCceEEEEECCCCCCccchHHHHHHHHHH--HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 35679999999976521 111111111 12245788999998542 11112222222222234589999997543
No 111
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.87 E-value=6.1e-05 Score=67.89 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=39.7
Q ss_pred CCCcEEEEeCCCCccc------cHHhHHHHHHHhhh-cCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQI------DKAMMDELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~------d~~l~~el~~i~~~-~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.++.+.|+||||.... .......+...... -.++.+++|+|+... .........+...-...-+|+||+|.
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 4689999999995432 01111111222222 224668999998532 23333333333322234589999997
Q ss_pred CCc
Q 015657 167 DSR 169 (403)
Q Consensus 167 ~~~ 169 (403)
...
T Consensus 157 ~~~ 159 (223)
T 4dhe_A 157 LTR 159 (223)
T ss_dssp SCH
T ss_pred CCh
Confidence 643
No 112
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.86 E-value=9.2e-05 Score=72.42 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHH--HHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQ--IAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~--~~~~~l 90 (403)
+..+++++|.+|+||||++.++|..++..|.+|++++++.........+ ++...+++.... .......+ .+..+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl--ls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA--LSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH--HHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999985443332222 112222221110 01222322 234445
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---ccH-----------HHHHHHHHHhhhcCCe
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MTG-----------QEAAALVTTFNIEIGI 156 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~g-----------~~~~~~~~~~~~~~~i 156 (403)
..+. +..+.|.|+|+. .. ..+...+..+.... +..-++|||. ... .++.+.++.+....++
T Consensus 123 ~~l~--~~~l~I~d~~~~-si-~~i~~~ir~l~~~~-gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~v 197 (338)
T 4a1f_A 123 DHLS--QKKLFFYDKSYV-RI-EQIRLQLRKLKSQH-KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEI 197 (338)
T ss_dssp HHHH--HSCEEEECCTTC-CH-HHHHHHHHHHHHHC-TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHh--cCCeEEeCCCCC-cH-HHHHHHHHHHHHhc-CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCC
Confidence 5553 356777787653 22 12223333333221 1456888886 111 2233444566677788
Q ss_pred eEEEEccCCC
Q 015657 157 TGAILTKLDG 166 (403)
Q Consensus 157 ~GvIlNk~D~ 166 (403)
..++++.+..
T Consensus 198 pVi~lsQl~R 207 (338)
T 4a1f_A 198 PIIALVQLNR 207 (338)
T ss_dssp CEEEEEECCG
T ss_pred eEEEEEecCc
Confidence 8888888764
No 113
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.85 E-value=0.00027 Score=67.14 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~ 53 (403)
.+..+++++|++|+||||++..|+..++.. |.+|++++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 345789999999999999999999999865 88999998875
No 114
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.85 E-value=2.4e-05 Score=79.30 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHH-HhhhcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVT-TFNIEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~-~~~~~~~i~GvIlNk~D 165 (403)
.++.+.|+||||...+...+.. ....+|.+++|+|+..+. .....+. .....++..-+++||+|
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~------~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIG------GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 166 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHh------hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCC
Confidence 5678999999996533222221 122458999999996541 2222222 22223332358899999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 167 l~ 168 (439)
T 3j2k_7 167 DP 168 (439)
T ss_pred Cc
Confidence 74
No 115
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.85 E-value=6.1e-05 Score=74.58 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred cccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHH
Q 015657 5 VSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ 84 (403)
Q Consensus 5 ~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~ 84 (403)
.+.++++....+.|+++|..++||||++..|. ++| .-++ +.....
T Consensus 11 ~~~~~~~~~~m~~i~iiG~~d~GKSTL~~~L~----~~g---iTi~--------------------~~~~~~-------- 55 (370)
T 2elf_A 11 SSGLVPRGSHMANVAIIGTEKSGRTSLAANLG----KKG---TSSD--------------------ITMYNN-------- 55 (370)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHTTS----EEE---EESS--------------------SEEEEE--------
T ss_pred ccccccccccCCEEEEECCCCCCHHHHHHHHH----hCC---EEEE--------------------eeEEEE--------
Confidence 34567766655689999999999999998876 111 1011 111111
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEE
Q 015657 85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAIL 161 (403)
Q Consensus 85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIl 161 (403)
...++.+.|+||||...+-..+... ...+|.+++|+| ..+ ......+... ...++..-+++
T Consensus 56 ---------~~~~~~i~iiDtPGh~~f~~~~~~~------~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvv 119 (370)
T 2elf_A 56 ---------DKEGRNMVFVDAHSYPKTLKSLITA------LNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIAL 119 (370)
T ss_dssp ---------CSSSSEEEEEECTTTTTCHHHHHHH------HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------ecCCeEEEEEECCChHHHHHHHHHH------HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 1246789999999976543322222 234589999999 433 1122222111 22344435788
Q ss_pred c-cCCC
Q 015657 162 T-KLDG 166 (403)
Q Consensus 162 N-k~D~ 166 (403)
| |+|.
T Consensus 120 NNK~Dl 125 (370)
T 2elf_A 120 TRSDST 125 (370)
T ss_dssp CCGGGS
T ss_pred EeccCC
Confidence 8 9998
No 116
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.85 E-value=5.4e-05 Score=79.59 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCCc--hh
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSR--GG 171 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~~--~~ 171 (403)
.|.+.||||||...+....... .. .+|.+++|+|+..+ ++...........++ .-+|+||+|.... ..
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~----l~--~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRS----LA--ACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADPER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHH----HH--HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCchHHHHHHHHH----HH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccHHH
Confidence 5789999999986543332222 22 24889999999544 333332222333333 4588999997542 22
Q ss_pred HHHHHHHHhCCC
Q 015657 172 AALSVKEVSGKP 183 (403)
Q Consensus 172 ~~~~~~~~~g~p 183 (403)
....+.+.++.+
T Consensus 143 v~~ei~~~lg~~ 154 (599)
T 3cb4_D 143 VAEEIEDIVGID 154 (599)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHhCCC
Confidence 334555555653
No 117
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.85 E-value=6.9e-05 Score=74.77 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
..|+++|..++||||++..|.....+.|... +... ..+.. ......|+.+-.... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~-~~e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNA-PEERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSC-CEEEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcC-HHHHhcCcEEEeeeE-------------Eec
Confidence 4588999999999999999998777666321 0100 11111 011122322111000 001
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
..++.+.|+||||...+ ...+ ......+|.+++|+|+..+ ......+.... ..++..-+++||+|...
T Consensus 63 ~~~~~~~iiDtpG~~~f----~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHADY----VKNM--ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHHHH----HHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChHHH----HHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 24689999999996432 2211 1223356899999999653 12222222111 22332347899999753
No 118
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.84 E-value=0.00037 Score=65.41 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+...|+++|.+|+||||+...|. |.++..++ + +.+.. .....+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~-~-~~~~t----------~~~~~~~~----------------- 82 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSII------GERVVSIS-P-FQSEG----------PRPVMVSR----------------- 82 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH------TSCCSCCC-S-SSCCC----------SSCEEEEE-----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHh------CCCccccc-C-CCCcc----------eeeEEEEE-----------------
Confidence 35668899999999999998876 33321111 1 10000 00000100
Q ss_pred HhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHh----hhcC-CeeEEEEc
Q 015657 94 KKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTF----NIEI-GITGAILT 162 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~----~~~~-~i~GvIlN 162 (403)
...++.+.|+||||..... ......+........++.+++|+|... .......+..+ .... ...-+|+|
T Consensus 83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 1246789999999975432 233333322222224578889966521 11112222222 2221 23458999
Q ss_pred cCCCCC
Q 015657 163 KLDGDS 168 (403)
Q Consensus 163 k~D~~~ 168 (403)
|+|...
T Consensus 163 K~Dl~~ 168 (270)
T 1h65_A 163 HAQFSP 168 (270)
T ss_dssp CCSCCC
T ss_pred CcccCC
Confidence 999653
No 119
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.84 E-value=0.0001 Score=77.53 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l 90 (403)
+.+.|+++|..|+||||++..|...-. ..+....+.| .+ ......|+.+........ +
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D----------~~-~~ErerGITI~~~~~~~~--------~ 65 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLD----------TL-DVERERGITVKMQAVRMF--------Y 65 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC----------------------------------CCCCSEEEE--------E
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccc----------cc-hhhhcccceeeeeEEEEE--------E
Confidence 357789999999999999999875421 1111111111 11 011112222110000000 0
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.......|.+.||||||...+....... . ..++.+++|+|+..+ ++...........++ .-+++||+|..
T Consensus 66 ~~~dg~~~~inliDTPGh~dF~~ev~r~----l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRA----L--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp ECTTSCEEEEEEECCCCSGGGHHHHHHH----H--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred EcCCCCeEEEEEEECCCcHhHHHHHHHH----H--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 0000134788999999986543322222 1 235899999999654 333222222233333 45889999975
Q ss_pred Cch--hHHHHHHHHhCC
Q 015657 168 SRG--GAALSVKEVSGK 182 (403)
Q Consensus 168 ~~~--~~~~~~~~~~g~ 182 (403)
... .....+.+.++.
T Consensus 139 ~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 139 SADVDRVKKQIEEVLGL 155 (600)
T ss_dssp TCCHHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHhhCC
Confidence 322 223344444444
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.83 E-value=0.00031 Score=61.61 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+...|+++|.+||||||+...|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44568899999999999998876
No 121
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.83 E-value=8.6e-05 Score=65.17 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---HhhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||......... .. .-.++.+++|+|+........ ... .+...-...-+|+||+|....
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITS----SY--YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEECCCcHhhhhhHH----HH--HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 46899999999643322111 11 123588999999865433222 111 221112234588999996432
Q ss_pred ---hhHHHHHHHHhCCCeEE
Q 015657 170 ---GGAALSVKEVSGKPIKL 186 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~f 186 (403)
...+..+....+.|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 138 VVDYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp CSCHHHHHHHHHHTTCCEEE
T ss_pred ccCHHHHHHHHHHcCCcEEE
Confidence 23445566677777643
No 122
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.83 E-value=4.8e-05 Score=66.68 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HH---HHhhh-cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LV---TTFNI-EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~---~~~~~-~~~i~GvIlNk~D~~~ 168 (403)
..+++.|+||||...... +. ... ....+.+++|+|......... .. ..+.. .-...-+|+||+|...
T Consensus 67 ~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSA-MR---DQY--MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEEECCChHHHHH-HH---HHh--hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 357899999999643211 10 111 123578899999865432222 11 22221 1123458999999653
Q ss_pred ---chhHHHHHHHHhCCCeE
Q 015657 169 ---RGGAALSVKEVSGKPIK 185 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi~ 185 (403)
....+..+.+..+.|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEE
T ss_pred ccCCHHHHHHHHHHcCCeEE
Confidence 23445556666777763
No 123
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.82 E-value=6.1e-05 Score=64.96 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhcC--CeeEEEEccCCCCCc--
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIEI--GITGAILTKLDGDSR-- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~~--~i~GvIlNk~D~~~~-- 169 (403)
.+.+.|+||||......... ......+.+++|+|+......... ...+.... ...-+|+||+|....
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC
T ss_pred EEEEEEEcCCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc
Confidence 37899999999543211100 011235889999999665433332 22222221 234588999996432
Q ss_pred --hhHHHHHHHHhCCCeEE
Q 015657 170 --GGAALSVKEVSGKPIKL 186 (403)
Q Consensus 170 --~~~~~~~~~~~g~pi~f 186 (403)
...+.......+.|+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 131 VETEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCeEEE
Confidence 23445566667777643
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.82 E-value=0.00014 Score=71.12 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccCC-ChhhHHHHHHhhhccCC---------ceEeCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDVY-RPAAIDQLVILGEQVGV---------PVYTAG 77 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv---------~v~~~~ 77 (403)
+..++.|+|.+|+||||++..++..... .|.+|++++++.. .+..+.+ .....++ .+....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~---~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD---IADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---HHHHcCCCHHHHHhceeEeecC
Confidence 4588999999999999999999987554 5789999998853 3332222 2222222 222221
Q ss_pred CCCCHHHHHHHHHHHHHh--CCCcEEEEeCCCCcc
Q 015657 78 TEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQ 110 (403)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~--~~~D~VIIDtpg~l~ 110 (403)
......+.+..+...+.. .++++||||+...+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 111222333333333444 678999999988664
No 125
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.82 E-value=0.00018 Score=63.73 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=19.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
.+..-|+++|.+||||||+...|.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHH
Confidence 445678999999999999997775
No 126
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.81 E-value=0.00028 Score=61.67 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=44.9
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhcC-CeeEEEEccCCCCCc---h
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEI-GITGAILTKLDGDSR---G 170 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~~-~i~GvIlNk~D~~~~---~ 170 (403)
+.+.|+||||...... .. ... .-..+.+++|+|+........ ....+.... ...-+|+||+|.... .
T Consensus 93 ~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS-IV---PLY--YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp EEEEEEECTTGGGCTT-TH---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred eEEEEEECCCcHHHHH-HH---HHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence 7899999999643221 11 111 124588999999966533322 222222211 345589999993222 2
Q ss_pred hHHHHHHHHhCCCe
Q 015657 171 GAALSVKEVSGKPI 184 (403)
Q Consensus 171 ~~~~~~~~~~g~pi 184 (403)
..+.......+.|+
T Consensus 167 ~~~~~~~~~~~~~~ 180 (208)
T 3clv_A 167 LEVQKYAQDNNLLF 180 (208)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcE
Confidence 33444555566655
No 127
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.81 E-value=8.2e-05 Score=64.01 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||........ ... .-..+.+++|+|+......... +......-...-+|+||+|....
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVT----RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHH----HHH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred eEEEEEEEECCCChHhhhhH----HHH--hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 35789999999964332211 111 1235889999999655332221 11121122234589999997432
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (179)
T 1z0f_A 136 RDVTYEEAKQFAEENGLLF 154 (179)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 233445555566655
No 128
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.80 E-value=6.6e-05 Score=72.70 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCC-ChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVY-RPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~ 89 (403)
-++.+.|++|+||||++..++..+++. |.+|++||+.-. .+.. .+..|++ ++... ..+..++....
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-------a~~lGvd~d~llv~~-~~~~E~~~l~i 100 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-------LRSMGVDPERVIHTP-VQSLEQLRIDM 100 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-------HHHTTCCGGGEEEEE-CSBHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-------HHHhCCCHHHeEEEc-CCCHHHHHHHH
Confidence 368899999999999999999998876 889999998632 2221 2222322 11111 12223331233
Q ss_pred HHHH---HhCCCcEEEEeCCCCcc
Q 015657 90 LEEA---KKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 90 l~~~---~~~~~D~VIIDtpg~l~ 110 (403)
++.+ +...+++||||+-..+.
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHhhccCceEEEEecccccc
Confidence 3333 45679999999987764
No 129
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.80 E-value=0.00033 Score=70.81 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~ 54 (403)
+..+++|+|.+|+||||++.++|...+. .|.+|+++++..-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3478999999999999999999999987 5899999998743
No 130
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.80 E-value=0.00017 Score=62.11 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||....... .. .. .-..+.+++|+|+........ ....+.. .....-+|.||+|..
T Consensus 55 ~~~~~~~Dt~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKM-LD---KY--IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTT-HH---HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccch-hh---HH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 478999999997543211 11 11 124588999999965543221 1122211 333356899999964
Q ss_pred Cc----hhHHHHHHHHhCCCeE
Q 015657 168 SR----GGAALSVKEVSGKPIK 185 (403)
Q Consensus 168 ~~----~~~~~~~~~~~g~pi~ 185 (403)
.. ...+..+....+.|+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 129 HMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEE
T ss_pred cccccCHHHHHHHHHHcCCcEE
Confidence 31 2344455566676653
No 131
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.80 E-value=0.0001 Score=64.45 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH------HHHHHHHHHhhh-----cCCeeEEEEccC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEAAALVTTFNI-----EIGITGAILTKL 164 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g------~~~~~~~~~~~~-----~~~i~GvIlNk~ 164 (403)
..+.+.|+||||......... . ..-..+.+++|+|+... .....+...+.. .-.+.-+|.||+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~----~--~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRK----L--ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHH----H--HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred CceEEEEEeCCChHHHHHHHH----H--HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence 457899999999654322111 1 12245889999999632 222222211111 112344889999
Q ss_pred CCCC
Q 015657 165 DGDS 168 (403)
Q Consensus 165 D~~~ 168 (403)
|...
T Consensus 146 Dl~~ 149 (198)
T 3t1o_A 146 DLPD 149 (198)
T ss_dssp TSTT
T ss_pred hccc
Confidence 9654
No 132
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=6.7e-05 Score=72.72 Aligned_cols=92 Identities=17% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE 79 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~ 79 (403)
+..++.++|.+|+||||++..++...+.. |.+|++++++. +++..+.+ .....+++ ++... .
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~---~~~~~g~~~~~~~~~l~~~~-~ 181 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN---MAKALGLDIDNVMNNIYYIR-A 181 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEE-C
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---HHHHhCCCHHHHhccEEEEe-C
Confidence 35789999999999999999999887654 78999999885 34443222 22223322 11111 1
Q ss_pred CCHH---HHHHHHHHHHHh-CCCcEEEEeCCCCc
Q 015657 80 VKPS---QIAKQGLEEAKK-KNVDVVIVDTAGRL 109 (403)
Q Consensus 80 ~~~~---~~~~~~l~~~~~-~~~D~VIIDtpg~l 109 (403)
.... +.+..+...+.. .++++||||+...+
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1222 223333334434 67899999998765
No 133
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.78 E-value=0.00032 Score=71.13 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~ 54 (403)
+..+++++|.+|+||||++.+++..++. .|.+|++++.+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578999999999999999999999986 6899999998754
No 134
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.78 E-value=0.00031 Score=72.08 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~ 54 (403)
+..+++|+|.+|+||||++.++|..++.+ |.+|++++++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 45789999999999999999999999987 999999998854
No 135
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.78 E-value=6.9e-05 Score=66.83 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---hcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||......... .. .-.++.+++|+|+....... .....+. ..-...-+|+||+|...+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITT----AY--YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC
T ss_pred EEEEEEEeCCCcHHHHHHHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 37899999999643321111 11 12358899999986543322 1112221 112234589999997432
Q ss_pred --hhHHHHHHHHhCCCeE
Q 015657 170 --GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 --~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 142 VTADQGEALAKELGIPFI 159 (213)
T ss_dssp SCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHcCCEEE
Confidence 2334455566777763
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.77 E-value=5.9e-05 Score=76.60 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=58.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
...|+++|.+||||||+...|. |.+..++... |+. ......... .
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~---~g~---------t~~~~~~~~-----------------~ 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGV---------TRDRIYSSA-----------------E 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC-----------------------CEEEEC-----------------T
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCCC---CCc---------ceeEEEEEE-----------------E
Confidence 3568999999999999998886 4444333211 111 000001111 1
Q ss_pred hCCCcEEEEeCCCCccccHHhHHHHHHHh--hhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 95 KKNVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~--~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
+.+..+.|+||||....+.....++.... ..-.++.+++|+|+..+ ......+..+...-...-+|+||+|..
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 25678999999996532221122221111 11235899999998542 222233333333223345889999964
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.76 E-value=6.7e-05 Score=69.15 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+..+++++|..|+||||++..++..+..+|.+|+++..-....+ .. ......|+...... ..... +.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~-~~---~i~srlG~~~~~~~-~~~~~----~i~~~ 80 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS-IR---NIQSRTGTSLPSVE-VESAP----EILNY 80 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG-CS---SCCCCCCCSSCCEE-ESSTH----HHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchH-HH---HHHHhcCCCccccc-cCCHH----HHHHH
Confidence 456899999999999999999999999999999999843211111 11 12233343211110 01112 22333
Q ss_pred HH----hCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657 93 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124 (403)
Q Consensus 93 ~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~ 124 (403)
+. ...+|+||||-.-.+. ......+..+..
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~ 114 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFD--DRICEVANILAE 114 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSC--THHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEecCccCc--HHHHHHHHHHHh
Confidence 32 2459999999987654 234444444433
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.75 E-value=0.00016 Score=65.95 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=54.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccCC-ChhhHHHHHHhhhccCC---------ceEeCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDVY-RPAAIDQLVILGEQVGV---------PVYTAG 77 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv---------~v~~~~ 77 (403)
+..+++++|++|+||||++..|+..... .+.+|++++++.. .+....+. ....++ .++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~- 98 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV---AERYGLSGSDVLDNVAYARA- 98 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH---HHHTTCCHHHHHHTEEEEEC-
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHH---HHHcCCCHHHHhhCeEEEec-
Confidence 3578999999999999999999986433 3678999988753 22221111 112222 12211
Q ss_pred CCCCHHH---HHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657 78 TEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 78 ~~~~~~~---~~~~~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
....+ .+......+...+++++|||.+....
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 99 --FNTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred --CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 12222 22233344444679999999988654
No 139
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.75 E-value=6e-05 Score=66.73 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=36.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
..+++++|.+||||||++..|+..+...|++|.++..|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5688999999999999999999999999999999988754
No 140
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.75 E-value=5.3e-05 Score=64.51 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCC--
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDS-- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~-- 168 (403)
.+.+.|+||||....... .. .. ....+.+++|+|+........ ....+ ....+ .-+|+||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAI-TK---AY--YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGGTTCC-CH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEcCCCcHhHHHH-HH---HH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence 578999999996432111 11 11 123588899999865432222 11222 12333 448999999642
Q ss_pred --chhHHHHHHHHhCCCeE
Q 015657 169 --RGGAALSVKEVSGKPIK 185 (403)
Q Consensus 169 --~~~~~~~~~~~~g~pi~ 185 (403)
....+..+....+.|+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 23344556666777663
No 141
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.74 E-value=0.00032 Score=59.34 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=43.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh--cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI--EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~--~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||...... +. ..... ..+.+++|+|.......... ... ... ..+ .-+|+||+|..
T Consensus 50 ~~~~~~l~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHH-HH---HHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 357899999999653211 11 11111 24889999998654332221 111 211 233 45899999964
Q ss_pred Cc----hhHHHHHHHHhCCCe
Q 015657 168 SR----GGAALSVKEVSGKPI 184 (403)
Q Consensus 168 ~~----~~~~~~~~~~~g~pi 184 (403)
.. ...+.......+.|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWNVNY 143 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTCEE
T ss_pred ccCccCHHHHHHHHHHcCCeE
Confidence 21 233444555566655
No 142
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00014 Score=76.62 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH----------HHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG----------QEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g----------~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
.++.++|+||||...+. .. .+.....++.+++|+|+..+ +............+...-+|+||+|
T Consensus 243 ~~~~~~iiDTPG~e~f~----~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD 316 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFV----PN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 316 (611)
T ss_dssp SSCEEEEEECCSSSCHH----HH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred CCceEEEEECCCCcccH----HH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 46789999999975421 11 12223346899999999754 2222111112223333457899999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 317 l~~ 319 (611)
T 3izq_1 317 NVD 319 (611)
T ss_dssp TTT
T ss_pred ccc
Confidence 754
No 143
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.74 E-value=9.8e-05 Score=63.83 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=45.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhc---CCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~---~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||........ ... .-..+.+++|+|+...... ......+... -...-+|+||+|....
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEEEEEEECCCSGGGGGGT----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCCChhhhhhh----HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 5789999999964322111 111 1235889999998655332 2222222221 2234588999997432
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (181)
T 2efe_B 134 KVTAEDAQTYAQENGLFF 151 (181)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHcCCEE
Confidence 233444555566665
No 144
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.74 E-value=0.00031 Score=61.24 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
..|+++|.+||||||+...|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999997775
No 145
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.74 E-value=3.7e-05 Score=67.90 Aligned_cols=42 Identities=38% Similarity=0.640 Sum_probs=37.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
..++.+|+++|.+||||||++..|+..+...|++|.+++.|.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 346789999999999999999999999999999999998773
No 146
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.73 E-value=0.00022 Score=69.96 Aligned_cols=140 Identities=20% Similarity=0.238 Sum_probs=85.8
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
+.+.++++|. ..+||||++..|...+.++|+++..+..- ..-. ..+...+++.-..... .-.......+..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg-----qtg~--li~~~~gv~~D~~~~~-~~ag~~e~~i~~ 239 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG-----QTGI--LIGADAGYVIDAVPAD-FVSGVVEKAVLK 239 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS-----HHHH--HTTCSEECCGGGSBGG-GHHHHHHHHHHH
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC-----ceee--eeccCCCCCCCceecc-hhhHHHHhhHHH
Confidence 4577889999 89999999999999999999999886633 1111 1112222221111000 011122222333
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--------------ccHHHHHHHHHHhhhcCCeeE
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--------------MTGQEAAALVTTFNIEIGITG 158 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--------------~~g~~~~~~~~~~~~~~~i~G 158 (403)
+..+++|++||+++|++........ ...+.....|+.++++-++ ...++.......+. ..++.|
T Consensus 240 ~~~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~-~~~V~g 317 (350)
T 2g0t_A 240 LEKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS-NAKVIG 317 (350)
T ss_dssp HHHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS-SCEEEE
T ss_pred hhhcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc-CCcEEE
Confidence 3247899999999998865332221 2445566678888887643 12345555555555 677899
Q ss_pred EE-Ecc
Q 015657 159 AI-LTK 163 (403)
Q Consensus 159 vI-lNk 163 (403)
++ +|-
T Consensus 318 i~~lN~ 323 (350)
T 2g0t_A 318 GVSLNG 323 (350)
T ss_dssp EECSSC
T ss_pred EEEcCc
Confidence 99 987
No 147
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.73 E-value=0.00011 Score=63.78 Aligned_cols=81 Identities=19% Similarity=0.087 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---Hhhh--cCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNI--EIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~--~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||...... +. ..... ..+.+++|+|......... ... .... ..+ .-+|+||+|...
T Consensus 65 ~~~~~l~Dt~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 137 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 137 (187)
T ss_dssp EEEEEEEECCCTTCCHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCcccHH-HH---HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 46899999999654321 11 11111 2488999999865433222 111 2222 233 448999999642
Q ss_pred ----chhHHHHHHHHhCCCe
Q 015657 169 ----RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ----~~~~~~~~~~~~g~pi 184 (403)
....+.......+.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 138 KRQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp GCCSCHHHHHHHHHHTTCEE
T ss_pred cCccCHHHHHHHHHHcCCeE
Confidence 1233444555566655
No 148
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.73 E-value=0.00011 Score=63.38 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||....... ... .....+.+++|+|+........ ....+ ...-...-+|+||+|....
T Consensus 59 ~~~~~~~Dt~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSV----THA--YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp EEEEEEEECCCC------------C--CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred EEEEEEEeCCCcHHHHHH----HHH--HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 468999999996432110 011 1123588999999966543222 12222 1122234589999996532
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 133 VVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp CSCHHHHHHHHHHHTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 2334555566677663
No 149
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.72 E-value=9.1e-05 Score=75.39 Aligned_cols=66 Identities=11% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHHh-hhcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~~-~~~~~i~GvIlNk~D 165 (403)
.++.+.|+||||.-.+. ..+ +.....+|.+++|+|+..+. .....+... ...++..-+++||+|
T Consensus 83 ~~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFI----KNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp SSEEEEEEECCCCTTHH----HHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred CCceEEEEECCCcHHHH----HHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 46789999999964322 211 12233568999999997552 222222211 122332457899999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 157 l~ 158 (458)
T 1f60_A 157 SV 158 (458)
T ss_dssp GG
T ss_pred cc
Confidence 75
No 150
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.72 E-value=0.00017 Score=64.70 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+...|+++|.+|+||||+...|.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34558899999999999997776
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.71 E-value=0.00013 Score=66.13 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+..++++|++|+||||++..++..+...|.++..++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 457789999999999999999999999889999998876
No 152
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.71 E-value=0.00016 Score=63.68 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCC--
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS-- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~-- 168 (403)
.+.+.|+||||......... .. .-..+.+++|+|+........ ....+.. .-...-+|+||+|...
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 142 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITR----SY--YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhhhHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence 47899999999643221111 11 123588999999865533322 2222211 1223458899999743
Q ss_pred --chhHHHHHHHHhCCCe
Q 015657 169 --RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 --~~~~~~~~~~~~g~pi 184 (403)
....+.......+.++
T Consensus 143 ~v~~~~~~~~~~~~~~~~ 160 (191)
T 2a5j_A 143 DVKREEGEAFAREHGLIF 160 (191)
T ss_dssp CSCHHHHHHHHHHHTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 1233445555667665
No 153
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.71 E-value=6e-05 Score=67.13 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||......... ...-..+.+++|+|+......... ...+. ..-...-+|+||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITS------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCChHHHHHHHH------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 46899999999643211100 111235889999999655433222 22221 122334589999997532
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 130 VVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp CSCHHHHHHHHHHTTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 2334445556676663
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.71 E-value=0.00017 Score=73.89 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHHh-hhcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~~-~~~~~i~GvIlNk~D 165 (403)
.++.+.|+||||.-.+...+.. ....+|.+++|+|+..+. .....+... .......-+++||+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~------~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~D 182 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIM------GISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 182 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHH------HHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCceEEEEECCCcHHHHHHHHH------hhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcC
Confidence 5689999999997543222221 223468999999996541 122222111 122333457899999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 183 l~~ 185 (483)
T 3p26_A 183 NVD 185 (483)
T ss_dssp GGT
T ss_pred ccc
Confidence 654
No 155
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.70 E-value=0.00015 Score=63.21 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh----cCCeeEEEEccCCCCC-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI----EIGITGAILTKLDGDS- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~----~~~i~GvIlNk~D~~~- 168 (403)
.+.+.|+||||....... ... ..-.++.+++|+|+........ ....+.. .-...-+|+||+|...
T Consensus 69 ~~~~~l~Dt~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSL----TTA--FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHHH----HHH--TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHHH----HHH--HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 578999999997432111 111 1224588999999865533322 2222221 1223458999999643
Q ss_pred ---chhHHHHHHHHhCCCeE
Q 015657 169 ---RGGAALSVKEVSGKPIK 185 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi~ 185 (403)
....+..+....+.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 143 RAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp CCSCHHHHHHHHHHHTCCEE
T ss_pred cccCHHHHHHHHHHcCCCEE
Confidence 12344556666777763
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.69 E-value=0.00018 Score=68.03 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
..|+++|.+||||||+...|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 348899999999999998886
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.69 E-value=3.6e-05 Score=77.77 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANY 38 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~ 38 (403)
++...|+++|..|+||||++..|...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 34567899999999999999988754
No 158
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.68 E-value=0.00038 Score=59.29 Aligned_cols=84 Identities=8% Similarity=-0.027 Sum_probs=43.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc----CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE----IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~----~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||.......+... . .-.++.+++|+|.......... ...+... -.+.-+|.||+|...
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDH---C--LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEEECCCCC--------CH---H--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred eEEEEEEEECCCccccchhhhhh---h--hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 35788999999975432111110 0 1124888999998654333222 2222111 123448899999642
Q ss_pred ----chhHHHHHHHHhCCCe
Q 015657 169 ----RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ----~~~~~~~~~~~~g~pi 184 (403)
....+.......+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKH 143 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEE
T ss_pred cccCCHHHHHHHHHHcCCcE
Confidence 2233445556666655
No 159
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.68 E-value=0.00023 Score=63.42 Aligned_cols=82 Identities=17% Similarity=0.061 Sum_probs=45.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||...... + .... .-.++.+++|+|......... ....+.. .-...-+|.||+|....
T Consensus 77 ~~~l~i~Dt~G~~~~~~-~---~~~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRT-I---TQSY--YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EEEEEEECCTTCGGGHH-H---HHHH--HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCcHhHHH-H---HHHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence 47899999999643211 1 1111 124588999999865543222 2222221 11234588999997531
Q ss_pred ---hhHHHHHHHHhCC-Ce
Q 015657 170 ---GGAALSVKEVSGK-PI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~-pi 184 (403)
...+..+....+. ++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 151 EVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp CSCHHHHHHHHHHTTCSEE
T ss_pred ccCHHHHHHHHHHcCCCEE
Confidence 2334455556665 44
No 160
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.68 E-value=0.00024 Score=62.77 Aligned_cols=82 Identities=18% Similarity=0.078 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh--cCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI--EIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~--~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||...... +. ..... ..+.+++|+|.......... ... +.. ..+ .-+|+||+|...
T Consensus 61 ~~~~~l~Dt~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 133 (206)
T ss_dssp EEEEEEEECCCTTCCHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEcCCChhhhHH-HH---HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence 46899999999654321 11 11111 24888999998654332221 112 211 223 458999999643
Q ss_pred c----hhHHHHHHHHhCCCeE
Q 015657 169 R----GGAALSVKEVSGKPIK 185 (403)
Q Consensus 169 ~----~~~~~~~~~~~g~pi~ 185 (403)
. ...+.......+.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 134 KRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp GCCSCHHHHHHHHHHHTCEEE
T ss_pred cccccHHHHHHHHHHhCCeEE
Confidence 2 2334455556676653
No 161
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=4.5e-05 Score=66.86 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhc----CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE----IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~----~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||......... .. .-.++.+++|+|+........ ....+... -...-+|+||+|...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTP----SY--YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred eEEEEEEEeCCCchhhhhhhH----HH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 357899999999653321111 11 123588999999965543322 22223221 123458999999743
Q ss_pred c---hhHHHHHHHHhCCCe
Q 015657 169 R---GGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~---~~~~~~~~~~~g~pi 184 (403)
. ...+.......+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLF 154 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 2 233444555556554
No 162
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.66 E-value=0.00056 Score=64.45 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----------CCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----------GKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----------G~kVllVd~D~ 53 (403)
+..+++|+|++|+||||++..++..++.. +.+|++++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 45789999999999999999999877652 35788888764
No 163
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.66 E-value=5.6e-05 Score=65.24 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
.+..+.|+||||......... .....++.+++|+|+... ......+..+...-...-+|+||+|...
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRA------RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCC------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCceEEEEECCCCHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 356789999999654321110 111235778999997442 3333333333322223458999999754
No 164
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.66 E-value=0.00019 Score=61.08 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=44.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh---hcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~---~~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||...... .. ... ....+.+++|+|+........ ....+. ....+.-+|.||+|....
T Consensus 53 ~~~~~~~~Dt~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRA-LA---PMY--YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEEEEECCSGGGGG-GT---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred eEEEEEEEcCCCchhhhc-cc---Hhh--CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 357899999999743211 11 111 123588899999865533222 222221 222234477899996432
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.|+
T Consensus 127 ~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 127 REVMERDAKDYADSIHAIF 145 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 233444555566555
No 165
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.66 E-value=0.00037 Score=62.81 Aligned_cols=90 Identities=20% Similarity=0.139 Sum_probs=55.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCC---CH-----H
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEV---KP-----S 83 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~---~~-----~ 83 (403)
+..+++++|.| .||||.|..+|.....+|++|+++....-. .+-..-+.. .++.+...+... .+ .
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHH
Confidence 45666666665 999999999999999999999999766431 222222222 234444433211 11 1
Q ss_pred HHHHHHHHHH----HhCCCcEEEEeCCCC
Q 015657 84 QIAKQGLEEA----KKKNVDVVIVDTAGR 108 (403)
Q Consensus 84 ~~~~~~l~~~----~~~~~D~VIIDtpg~ 108 (403)
..+..++..+ ....||+||+|-.+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 2333444433 346799999998743
No 166
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00078 Score=61.47 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~ 54 (403)
+..+++++|.+|+||||+|.++|...+ +.|.+|++++.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 357899999999999999999987654 55889999998744
No 167
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.65 E-value=0.00031 Score=60.94 Aligned_cols=83 Identities=18% Similarity=0.049 Sum_probs=44.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhc-CCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIE-IGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~-~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||......... .... .++.+++|+|......... ....+ ... -...-+|+||+|....
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~----~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRD----QYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEEEEEEECCCC---CTTHH----HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEEEEEEECCCcHHHHHHHH----HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 46688899999654322111 1111 2488899999865433222 22222 111 1234588999996532
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 125 TVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp SSCHHHHHHHHHHHTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 3445566677787763
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.65 E-value=0.00055 Score=68.98 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...+...+.. ....++.+++|+|+..+ ......+... ...++..-+++||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~------~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMAT------GASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHH------HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHH------HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 4678999999996543222221 22356899999999543 1222211111 122333457899999754
No 169
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.64 E-value=0.00011 Score=74.26 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=54.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.+||||||+...|+ |.+..++... |+. ......... .+.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~---------T~d~~~~~~-----------------~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGV---------TRDRIYSSA-----------------EWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE------EEECC-----------------------CEEEEC-----------------TTC
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCC---------ccceEEEEE-----------------EEC
Confidence 58899999999999998876 4343222110 111 000011111 124
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
+.++.|+||||....+..+...+... ...-.++.+++|+|+..+ ......+..+...-...-+|+||+|...
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 67899999999753222111111111 111235889999998543 1112222323322234558999999753
No 170
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.64 E-value=0.00023 Score=63.06 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||...... + .... .-..+.+++|+|+........ ....+.. .-...-+|+||+|....
T Consensus 55 ~~~~~~l~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRT-I---TTAY--YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEEEEEECCSGGGHH-H---HHTT--GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred eEEEEEEEECCCchhhcc-h---HHHh--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 357899999999743211 1 1111 123588999999965543222 2222221 12334589999996432
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+..+....+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFEF 147 (203)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred cccCHHHHHHHHHHCCCeE
Confidence 234455666677765
No 171
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.64 E-value=0.00066 Score=70.17 Aligned_cols=41 Identities=37% Similarity=0.507 Sum_probs=37.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
..+.+|+++|.+||||||++..|+.+|...+.++.+++.|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 45689999999999999999999999998899999999884
No 172
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=0.00016 Score=61.57 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=43.9
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HH---HHHhh---hcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFN---IEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~---~~~~~---~~~~i~GvIlNk~D~ 166 (403)
..+.+.|+||||......... ... ...+.+++|+|+....... .. +..+. ...+ .-+|+||+|.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~----~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl 121 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQR----LSI--SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE 121 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHH----HHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHH----Hhc--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence 356899999999754322111 111 1248899999986543221 11 22221 1233 4589999995
Q ss_pred CCc----hhHHHHHHHHhCCCe
Q 015657 167 DSR----GGAALSVKEVSGKPI 184 (403)
Q Consensus 167 ~~~----~~~~~~~~~~~g~pi 184 (403)
... ...........+.|+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~ 143 (172)
T 2erx_A 122 SPSREVQSSEAEALARTWKCAF 143 (172)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEE
T ss_pred ccccccCHHHHHHHHHHhCCeE
Confidence 421 123344455566655
No 173
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.63 E-value=0.00015 Score=63.53 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||.-...... . ...-..+.+++|+|+........ ....+.. .-...-+|+||+|....
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTIT----T--AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSG----G--GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred eEEEEEEEeCCCcHHHhhhH----H--HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 35789999999964332111 0 11123588899999865433222 2222221 12334589999996432
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+..+.+..+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2gf9_A 143 RVVPAEDGRRLADDLGFEF 161 (189)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHcCCeE
Confidence 234455666677665
No 174
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.62 E-value=0.00031 Score=62.09 Aligned_cols=82 Identities=16% Similarity=0.034 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||.... ..+ .....-..+.+++|+|+........ ....+.. .-...-+|+||+|..
T Consensus 72 ~~~~~l~Dt~G~~~~-----~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLY-----KEQ-ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHH-----HHH-HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHHH-----HHH-HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 578999999997421 111 0111124588999999966543222 2222221 122345899999965
Q ss_pred C-c----hhHHHHHHHHhCCCe
Q 015657 168 S-R----GGAALSVKEVSGKPI 184 (403)
Q Consensus 168 ~-~----~~~~~~~~~~~g~pi 184 (403)
. . ...+.......+.++
T Consensus 146 ~~~~~v~~~~~~~~~~~~~~~~ 167 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNTLDF 167 (208)
T ss_dssp ----CCCHHHHHHHHHHTTCEE
T ss_pred hhhccCCHHHHHHHHHHcCCEE
Confidence 4 1 234455566667655
No 175
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.62 E-value=0.00026 Score=71.46 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=62.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..|+++|.+||||||+...|. |.....+.. + +.. +. ..... .+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~--~-~gt-----T~-d~~~~-~~~------------------ 219 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN--V-AGT-----TR-DAVDT-SFT------------------ 219 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC------------------CCE-EEE------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC--C-CCc-----ee-eeeEE-EEE------------------
Confidence 45668899999999999998877 333222221 0 111 00 00000 111
Q ss_pred HhCCCcEEEEeCCCCccccH-----HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~-----~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
..+..+.|+||||...... +....+..+...-.++.+++|+|+..+ ......+......-...-+++||+|.
T Consensus 220 -~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 220 -YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298 (436)
T ss_dssp -ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred -ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 1355799999999632110 111112222222235889999999543 22223333333333445589999996
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 299 ~~ 300 (436)
T 2hjg_A 299 VD 300 (436)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 176
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.62 E-value=0.00014 Score=64.03 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCC-
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS- 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~- 168 (403)
..+.+.|+||||......... .. ....+.+++|+|+........ ....+.. .-...-+|+||+|...
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAP----MY--YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTH----HH--HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhH----Hh--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 457899999999643321111 11 123588899999865433222 2222221 1233458899999642
Q ss_pred ---chhHHHHHHHHhCCCe
Q 015657 169 ---RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi 184 (403)
....+..+....+.|+
T Consensus 144 ~~v~~~~~~~~~~~~~~~~ 162 (192)
T 2fg5_A 144 REVPLKDAKEYAESIGAIV 162 (192)
T ss_dssp CCSCHHHHHHHHHTTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 1233444555556555
No 177
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.62 E-value=0.0002 Score=62.98 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.....|+++|.+||||||+...|. +.+...++. .| ..+......
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~---~~-----------t~~~~~~~~---------------- 58 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHI---TA-----------TVGYNVETF---------------- 58 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHS------CCC----CC---CC-----------CSSEEEEEE----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh------cCCCccccc---cc-----------ccceeEEEE----------------
Confidence 344678999999999999997775 333211110 11 111111111
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhhc-----------CCeeE
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE-----------IGITG 158 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~~-----------~~i~G 158 (403)
....+.+.|+||||........ .. ..-.++.+++|+|+.... ........+... -...-
T Consensus 59 -~~~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii 131 (199)
T 4bas_A 59 -EKGRVAFTVFDMGGAKKFRGLW----ET--YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL 131 (199)
T ss_dssp -EETTEEEEEEEECCSGGGGGGG----GG--GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE
T ss_pred -EeCCEEEEEEECCCCHhHHHHH----HH--HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE
Confidence 1257889999999975321111 11 112458899999996543 222222222111 22344
Q ss_pred EEEccCCCCCc
Q 015657 159 AILTKLDGDSR 169 (403)
Q Consensus 159 vIlNk~D~~~~ 169 (403)
+|+||+|....
T Consensus 132 lv~NK~Dl~~~ 142 (199)
T 4bas_A 132 FFANKMDAAGA 142 (199)
T ss_dssp EEEECTTSTTC
T ss_pred EEEECcCCCCC
Confidence 88999997543
No 178
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.61 E-value=0.00059 Score=58.33 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh-----cCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI-----EIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~-----~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||....+.... .. ......+.+++|+|.......... ...+.. .. +.-+|.||+|...
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~---~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-piilv~NK~Dl~~ 125 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWS---QE-SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV-PIILVGNKADLAR 125 (175)
T ss_dssp EEEEEEECCC-------CHH---HH-HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----C-CEEEEEECTTCTT
T ss_pred EEEEEEEecCCCCccchhhh---HH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCC-CEEEEEEChhhcc
Confidence 46889999999753211111 11 111235788999998654332222 122221 22 2458999999653
Q ss_pred c----hhHHHHHHHHhCCCe
Q 015657 169 R----GGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~----~~~~~~~~~~~g~pi 184 (403)
. ...+.......+.|+
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~ 145 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKF 145 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEE
T ss_pred ccccCHHHHHHHHHHcCCeE
Confidence 2 122333444566655
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.61 E-value=0.00021 Score=66.93 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+...|+++|.+|+||||+...|.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999998887
No 180
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.61 E-value=0.00043 Score=58.43 Aligned_cols=84 Identities=23% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhh---h-cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---I-EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~---~-~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||...... +.. ... ...+.+++|+|....... ......+. . .-...-+|+||+|....
T Consensus 50 ~~~~~l~D~~G~~~~~~-~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 50 PSVLEILDTAGTEQFAS-MRD---LYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEEEEEEECCCTTCCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCchhhHH-HHH---HHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 46689999999654321 111 111 124788999998654332 22222221 1 12234589999995321
Q ss_pred ----hhHHHHHHHHhCCCeEE
Q 015657 170 ----GGAALSVKEVSGKPIKL 186 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi~f 186 (403)
...+.......+.|+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFME 144 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEE
T ss_pred ccCCHHHHHHHHHHhCCCEEE
Confidence 23344555566777633
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.61 E-value=0.0028 Score=61.70 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=59.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
.++|+|++|+||||++..++..+... +..++.++|....... .-+.......+...- ................+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT-AIIGEIARSLNIPFP--RRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH-HHHHHHHHHTTCCCC--SSCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH-HHHHHHHHHhCccCC--CCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999988776 6788888876544211 111122222232211 1122333333333333322
Q ss_pred -CCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657 96 -KNVDVVIVDTAGRLQIDKAMMDELKDVK 123 (403)
Q Consensus 96 -~~~D~VIIDtpg~l~~d~~l~~el~~i~ 123 (403)
....++|||=+..+ +......+..+.
T Consensus 123 ~~~~~vlilDE~~~l--~~~~~~~L~~~~ 149 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL--APDILSTFIRLG 149 (389)
T ss_dssp TTCCEEEEEETGGGS--CHHHHHHHHHHT
T ss_pred cCCeEEEEEECcccc--chHHHHHHHHHH
Confidence 34679999988776 444444444443
No 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=0.00037 Score=70.30 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
.|+++|.++|||||+...|. |.+..+++ | .|.. ......... .+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~-~--~~g~-------T~d~~~~~~-------------------~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVE-D--EEGV-------TRDPVQDTV-------------------EWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C------------------------CCSEEEE-------------------EET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceec-C--CCCC-------ccceeeEEE-------------------EEC
Confidence 48899999999999998887 44433322 1 0111 000000001 124
Q ss_pred CCcEEEEeCCCCcccc-----HHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d-----~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
+..+.|+||||..... ..+..... ...-.++.+++|+|+..+. ........+...-...-+|+||+|..
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~--~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTL--NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHH--HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHH--HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 5678999999975421 11211111 1223468999999985431 11122222222222345899999974
No 183
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.60 E-value=0.00025 Score=60.21 Aligned_cols=83 Identities=20% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||....... . ... .-..+.+++|+|+......... ...+.. .-.+.-+|+||+|....
T Consensus 50 ~~~~~~~~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASL-A---PXY--YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGG-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEEEEEEEECCCChhhhhh-h---hhh--hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 3568999999996533211 1 111 1235889999999655333222 222221 12234488899995421
Q ss_pred -------hhHHHHHHHHhCCCe
Q 015657 170 -------GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 -------~~~~~~~~~~~g~pi 184 (403)
...........+.++
T Consensus 124 ~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp SCCCCSCHHHHHHHHHHHTCEE
T ss_pred ccccCCCHHHHHHHHHHcCCEE
Confidence 123344455566655
No 184
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.60 E-value=0.00033 Score=70.10 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCC---------ceEeCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAG 77 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv---------~v~~~~ 77 (403)
+..++.|+|++|+||||++..|+..... .+.+|++++... +++....+ .....++ .+....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~---~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---IAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH---HHHHcCCChHhHhhcEEEeccC
Confidence 3478999999999999999988765543 357899998874 33332222 2223332 222111
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657 78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
......+.+..+...+...++++||||.+..+.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence 100112233444444445678999999877653
No 185
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.59 E-value=0.00014 Score=64.26 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||....... ..... -..+.+++|+|+......... +......-...-+|+||+|..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~----~~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSI----TSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHH----HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHH----HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 478999999996433211 11111 134889999998655433221 222222223345899999964
No 186
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.59 E-value=0.00018 Score=63.99 Aligned_cols=82 Identities=20% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh---hhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF---NIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~---~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||........ ... .-.++.+++|+|.......... ...+ ...-...-+|+||+|....
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVT----RSY--YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp EEEEEEECCTTHHHHSCCC----HHH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred eeEEEEEcCCCcHhHHHHH----HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 4789999999953211100 111 1235889999998655433222 1222 1112234588999996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 147 ~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 147 EVTFLEASRFAQENELMF 164 (200)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 123344445556555
No 187
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.59 E-value=0.00024 Score=63.73 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=57.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe--ccCCChhhHHHHHHhhhccCCce--EeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd--~D~~rp~~~~~l~~~~~~~gv~v--~~~~~~~~~~~~~~~ 88 (403)
.+.++.+++|+.|+||||.+..++..+..+|++|+++. .|. |.+. .......|+.. ...... .+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~~~~-------~~ 73 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAIKNS-------RE 73 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEESSS-------TH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEeeCCH-------HH
Confidence 34589999999999999999999999999999999986 332 1110 01122223321 111111 13
Q ss_pred HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i 122 (403)
.++.+. ..||+||||-+..+. ...+..+..+
T Consensus 74 i~~~~~-~~~dvViIDEaqfl~--~~~v~~l~~l 104 (191)
T 1xx6_A 74 ILKYFE-EDTEVIAIDEVQFFD--DEIVEIVNKI 104 (191)
T ss_dssp HHHHCC-TTCSEEEECSGGGSC--THHHHHHHHH
T ss_pred HHHHHh-ccCCEEEEECCCCCC--HHHHHHHHHH
Confidence 333332 369999999877753 2334444443
No 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.58 E-value=0.00022 Score=61.38 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+..-|+++|.+||||||+...|.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 44568899999999999997776
No 189
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.58 E-value=0.00021 Score=66.64 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=34.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~ 57 (403)
...|.+|+++|++||||||++..|+..+ +..+.+++.|.++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 4567899999999999999999988765 345678899977643
No 190
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.58 E-value=0.00017 Score=62.62 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||...... + .....-..+.+++|+|+......... ...+.. .-...-+|.||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRT-----I-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEEEEEEC---------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEEEEEEcCCCChhhhh-----h-HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 47899999999643211 0 00111245889999999665433222 222221 12234589999996532
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+..+....+.|+
T Consensus 130 ~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 130 QVSKERGEKLALDYGIKF 147 (183)
T ss_dssp CSCHHHHHHHHHHHTCEE
T ss_pred cCCHHHHHHHHHHcCCeE
Confidence 234455566667665
No 191
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=0.00034 Score=61.45 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH------HHHHHhh---hcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFN---IEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~------~~~~~~~---~~~~i~GvIlNk~D~ 166 (403)
..+.+.|+||||...... +.. ... ...+.+++|+|........ ..+.... ...+ .-+|+||+|.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~-~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl 126 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPA-MQR---LSI--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE 126 (199)
T ss_dssp EEEEEEEEECCGGGSCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred EEEEEEEEeCCChHHhHH-HHH---Hhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 356899999999654321 111 111 1248889999986543221 1122221 1233 4589999997
Q ss_pred CCc---hhHHHHHHHHhCCCe
Q 015657 167 DSR---GGAALSVKEVSGKPI 184 (403)
Q Consensus 167 ~~~---~~~~~~~~~~~g~pi 184 (403)
... ...+.......+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ 147 (199)
T 2gf0_A 127 TQREVDTREAQAVAQEWKCAF 147 (199)
T ss_dssp SSCSSCHHHHHHHHHHHTCEE
T ss_pred CccccCHHHHHHHHHHhCCeE
Confidence 532 233344455566555
No 192
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.57 E-value=0.00062 Score=58.97 Aligned_cols=85 Identities=11% Similarity=-0.040 Sum_probs=46.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---HhhhcC-CeeEEEEccCCCCC-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIEI-GITGAILTKLDGDS- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~~-~i~GvIlNk~D~~~- 168 (403)
.+.+.|+||||......... ... -..+.+++|+|......... ... ...... ...-+|.||+|...
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMRE----QYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHH----HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred EEEEEEEECCCchhhHHHHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 45567799999653321111 111 12488999999966533222 111 111111 22448999999642
Q ss_pred ---chhHHHHHHHHhCCCeEEe
Q 015657 169 ---RGGAALSVKEVSGKPIKLV 187 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi~fi 187 (403)
....+..+....+.|+..+
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEE
T ss_pred cCcCHHHHHHHHHHhCCeEEEe
Confidence 2344566677778877444
No 193
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.00018 Score=69.37 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=54.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH------------hCC----CcEEEEeccCC-ChhhHHHHHHhhhccCCc----
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK------------KQG----KSCMLVAGDVY-RPAAIDQLVILGEQVGVP---- 72 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~------------~~G----~kVllVd~D~~-rp~~~~~l~~~~~~~gv~---- 72 (403)
+..++.|+|.+|+||||++.+++...+ ..| .+|++++++-. .+..+.+. ....+++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~---~~~~g~~~~~~ 173 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM---AEHAGIDGQTV 173 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH---HHHHTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH---HHHcCCCHHHH
Confidence 458999999999999999999998643 235 79999998853 34332222 2222222
Q ss_pred ---eEeCCCCCCHH---HHHHHHHHHHHh-CCCcEEEEeCCCCc
Q 015657 73 ---VYTAGTEVKPS---QIAKQGLEEAKK-KNVDVVIVDTAGRL 109 (403)
Q Consensus 73 ---v~~~~~~~~~~---~~~~~~l~~~~~-~~~D~VIIDtpg~l 109 (403)
++... ..... +.+......+.. .++++||||+-..+
T Consensus 174 ~~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 174 LDNTFVAR-AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHTEEEEE-CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred hcCEEEEe-CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 11111 11222 223333333433 57889999987765
No 194
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.55 E-value=0.00029 Score=60.43 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh---hcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~---~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||......... .. ...++.+++|+|+........ ....+. ..-...-+|+||+|....
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIP----SY--IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSH----HH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHH----HH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 46899999999643322111 11 123588999999865433221 112211 112234589999996421
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
...+.......+.|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 136 QVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred cCCHHHHHHHHHHcCCeEE
Confidence 2333444555666653
No 195
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.54 E-value=0.00017 Score=61.46 Aligned_cols=83 Identities=22% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCC-
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDS- 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~- 168 (403)
..+.+.|+||||...... +.. ...-..+.+++|+|.......... ...+. ..-...-+|+||+|...
T Consensus 53 ~~~~l~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHA-----LGP-IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp CEEEEEEEECCCC------------C-CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred EEEEEEEEECCCcHhhhh-----hHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 346889999999643211 000 011245788999998655332222 11221 12223458999999643
Q ss_pred ---chhHHHHHHHHhCCCe
Q 015657 169 ---RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi 184 (403)
....+.......+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (170)
T 1z08_A 127 RHVSIQEAESYAESVGAKH 145 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 1233445555666655
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.54 E-value=0.00023 Score=65.21 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~ 54 (403)
+..+++++|++||||||++..|+.... ..+..+.+++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 457899999999999999999986555 56778888877643
No 197
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.54 E-value=0.00025 Score=69.50 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
.|+|+|.+||||||+...|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 48899999999999998886
No 198
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.53 E-value=0.00027 Score=60.03 Aligned_cols=83 Identities=17% Similarity=0.052 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||....... . ... ...++.+++|+|+........ ....+.. .-.+.-+|.||+|....
T Consensus 53 ~~~~~~~~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSL-A---PMY--YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEEEECCSGGGGGG-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEeCCCcHHhhhh-h---HHh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 3578999999996432211 1 111 123588999999965533222 2222221 11233466799996421
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (170)
T 1r2q_A 127 RAVDFQEAQSYADDNSLLF 145 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 233344445556554
No 199
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.53 E-value=0.00023 Score=66.07 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=34.2
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+.....++.+|++.|..||||||.+..|+.+|...|+++.++...|.
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 33344457899999999999999999999999999999334444443
No 200
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.52 E-value=0.0002 Score=62.91 Aligned_cols=83 Identities=20% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||...... +.. .. .-.++.+++|+|+....... .....+.. .-...-+|+||+|....
T Consensus 72 ~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRA-ITS---AY--YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEEESCCCTTCT-THH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEeCCCchhhhh-hhH---HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 357889999999754321 111 11 12358899999986554322 22222221 12234589999996431
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~ 164 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLF 164 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 233344455566655
No 201
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.52 E-value=0.00033 Score=69.89 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~ 169 (403)
+.+.|+||||.-.....+. . ....+|.+++|+|+..+ ......+.... ......-+++||+|....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~----~--~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATML----S--GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EEEEEEECCCCGGGHHHHH----H--HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred ceEEEEECCCcHHHHHHHH----H--HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence 6899999999643322222 1 22346899999999543 22222222221 123334589999997643
No 202
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.52 E-value=3.3e-05 Score=81.19 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+...|+++|.+++||||++..|....
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999987544
No 203
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.00037 Score=61.22 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCC-
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDS- 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~- 168 (403)
..+.+.|+||||..... ...... .-..+.+++|+|........ .....+.. .-...-+|.||+|...
T Consensus 70 ~~~~~~i~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYR----TITTAY--YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp TTEEEEEECHHHHHHCH----HHHHHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEEeCCChHHHH----HHHHHH--HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 46789999999953221 111111 12458899999986543322 22222211 2223458899999642
Q ss_pred ---chhHHHHHHHHhCCCe
Q 015657 169 ---RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi 184 (403)
....+..+....+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 2233455566677765
No 204
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.51 E-value=0.00031 Score=71.81 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+|+||||+...|. +....++... |... .......+. .
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~~---~gtT-------~d~~~~~i~-------------------~ 278 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLL------GQERAIVSHM---PGTT-------RDYIEECFI-------------------H 278 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC----------------------------------CEEEE-------------------E
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---CCce-------EEEEEEEEE-------------------E
Confidence 348999999999999998886 2222222110 0000 000000111 1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHH------HHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQ------EAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~------~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
.++.+.|+||||...... ..... ......-.++.+++|+|+.... ........+. . ...-+|+||+|.
T Consensus 279 ~g~~l~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-~piIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A-AKFLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-SEEEEEEECTTS
T ss_pred CCeEEEEEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-CCEEEEEECcCC
Confidence 467899999999754211 11110 1112233568899999985432 2223333332 2 234588999997
Q ss_pred CCch
Q 015657 167 DSRG 170 (403)
Q Consensus 167 ~~~~ 170 (403)
....
T Consensus 356 ~~~~ 359 (476)
T 3gee_A 356 AANA 359 (476)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 6443
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.51 E-value=9e-05 Score=65.04 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++|+|+|.+||||||++..|+..|...|+.+.+++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 5789999999999999999999999889999888644
No 206
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.51 E-value=0.0014 Score=57.19 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+...|+++|.+||||||+...|. +.+.. ...+ ..+......
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~------~~~~~--~~~~--------------t~~~~~~~~---------------- 55 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS------MNEVV--HTSP--------------TIGSNVEEI---------------- 55 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH------TTSCE--EEEC--------------CSCSSCEEE----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHh------cCCCC--cCcC--------------CCccceEEE----------------
Confidence 445668999999999999997776 21211 1111 011111100
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||......... .. .-.++.+++|+|+... .........+.. .-...-+|+||+|
T Consensus 56 -~~~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (187)
T 1zj6_A 56 -VINNTRFLMWDIGGQESLRSSWN----TY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128 (187)
T ss_dssp -EETTEEEEEEECCC----CGGGH----HH--HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHhHHHHHH----HH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCC
Confidence 01357899999999753322111 11 1245889999999544 333333333221 1233458999999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 129 l~~ 131 (187)
T 1zj6_A 129 VKE 131 (187)
T ss_dssp STT
T ss_pred CcC
Confidence 754
No 207
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.51 E-value=0.00027 Score=59.93 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... +. .. ....++.+++|+|+.... ........+.. .-...-+|.||+|...
T Consensus 42 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRP-LW---RH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SSCEEEEEECCCCGGGHH-HH---HH--HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEEcCCChhhHH-HH---HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 468899999999753211 11 11 123458899999986542 22222322221 1223458999999754
No 208
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.51 E-value=0.00059 Score=61.07 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh----cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI----EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~----~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||.... ....... .-..+.+++|+|+.......... ..+.. .-...-+|+||+|....
T Consensus 83 ~~~l~l~Dt~G~~~~----~~~~~~~--~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQERF----RSLTTAF--FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHHH----HHHHHHH--HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHhH----HhHHHHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 578999999995321 1111111 22458899999997654433322 22221 11234588999996431
Q ss_pred ----hhHHHHHHHHhCCCeEE
Q 015657 170 ----GGAALSVKEVSGKPIKL 186 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi~f 186 (403)
...+..+....+.++..
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 157 REVNERQARELADKYGIPYFE 177 (217)
T ss_dssp CCSCHHHHHHHHHHTTCCEEE
T ss_pred cccCHHHHHHHHHHCCCcEEE
Confidence 23445556667777633
No 209
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.51 E-value=0.00077 Score=57.84 Aligned_cols=82 Identities=20% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh----hhcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF----NIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~----~~~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||...... +.. .... ..+.+++|+|.......... ...+ ...-...-+|+||+|....
T Consensus 56 ~~~~~~~Dt~G~~~~~~-~~~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGA-MRE---QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp EEEEEEEECCCTTTTSC-CHH---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCchhhHH-HHH---HHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46789999999653321 111 1111 24888999998654332221 1122 1111234589999996432
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 130 ~~v~~~~~~~~~~~~~~~~ 148 (181)
T 2fn4_A 130 RQVPRSEASAFGASHHVAY 148 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 223344444555555
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=0.004 Score=60.18 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=56.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC---CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~---G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~ 88 (403)
...+..++++|++|+||||++..++..+... +..+..++|..... ....+.......+.+.-. ......+....
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~ 118 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-PYRVLADLLESLDVKVPF--TGLSIAELYRR 118 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-HHHHHHHHTTTTSCCCCS--SSCCHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-HHHHHHHHHHHhCCCCCC--CCCCHHHHHHH
Confidence 3456789999999999999999999988765 77888888653221 111122222333332111 11223344444
Q ss_pred HHHHHHhCC-CcEEEEeCCCCc
Q 015657 89 GLEEAKKKN-VDVVIVDTAGRL 109 (403)
Q Consensus 89 ~l~~~~~~~-~D~VIIDtpg~l 109 (403)
....+...+ ..++|||=+..+
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhh
Confidence 444443222 678999976554
No 211
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.48 E-value=0.00019 Score=62.95 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... + .... ...++.+++|+|+... +.+......+.. .-...-+|+||+|...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRS-M---WERY--CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TTEEEEEEEECCSHHHHT-T---HHHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHH-H---HHHH--HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 468899999999643211 1 1111 1245889999998543 222222222211 1123458999999754
No 212
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.48 E-value=0.00016 Score=61.66 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=38.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||........ .. ..-..+.+++|+|+... .........+.. .-...-+|+||+|...
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYW----RC--YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGG----GG--GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCChhhhHHH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 36789999999974321111 01 11245889999998543 333333322221 1233458999999754
Q ss_pred c
Q 015657 169 R 169 (403)
Q Consensus 169 ~ 169 (403)
.
T Consensus 123 ~ 123 (171)
T 1upt_A 123 A 123 (171)
T ss_dssp C
T ss_pred C
Confidence 3
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.48 E-value=0.00073 Score=60.93 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~ 53 (403)
+..+++++|++||||||++..|+..+.. .+..++.++.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4588999999999999999999876553 244677777664
No 214
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.48 E-value=0.00046 Score=60.04 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+...|+++|.+||||||+...|. +.+..... | ..+......
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~-----~-----------t~~~~~~~~----------------- 60 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTS-----P-----------TIGSNVEEI----------------- 60 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEE-----C-----------CSSSSCEEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHh------cCCCCccC-----C-----------cCceeeEEE-----------------
Confidence 34568899999999999997776 22221110 0 011111100
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~ 166 (403)
...++.+.|+||||........ .. ..-..+.+++|+|+... +.+......+.. .-...-+|+||+|.
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSW----NT--YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGG----GG--GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 0145889999999974321111 11 11245889999998543 333333332221 22234588999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 135 ~~ 136 (181)
T 2h17_A 135 KE 136 (181)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 215
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.48 E-value=0.00077 Score=68.33 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.+..|+++|.+|+||||+...|. |.....+... +.. ........+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~~---~gt-------t~~~~~~~~~------------------ 239 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSNV---AGT-------TRDAVDTSFT------------------ 239 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC----------------CTTSEEEE------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHh------CCCccccCCC---CCe-------EEEEEEEEEE------------------
Confidence 45668899999999999998776 3332222211 110 0000000111
Q ss_pred HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657 94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 166 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~ 166 (403)
..+..+.|+||||.... ..+....+..+...-.++.+++|+|+..+ ......+......-...-+|+||+|.
T Consensus 240 -~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 240 -YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 318 (456)
T ss_dssp -ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred -ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 13568999999995321 01111222222222235889999999543 22233333333223345589999996
Q ss_pred C
Q 015657 167 D 167 (403)
Q Consensus 167 ~ 167 (403)
.
T Consensus 319 ~ 319 (456)
T 4dcu_A 319 V 319 (456)
T ss_dssp S
T ss_pred C
Confidence 5
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=2.1e-05 Score=70.57 Aligned_cols=27 Identities=44% Similarity=0.652 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQG 43 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G 43 (403)
+++++|++|+||||+...|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 588999999999999999999998667
No 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.47 E-value=0.00076 Score=60.10 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
.+++|+|+|.+||||||++..|+..+ | ..++++|....
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 46789999999999999999998877 3 34678886543
No 218
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.47 E-value=0.0003 Score=61.65 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||.......+.. .. .-.++.+++|+|+......... ...+.. .-...-+|+||+|....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~---~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQ---HY--YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhhH---HH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 478999999996422101111 11 1245889999998654332221 111111 11234489999997432
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 015657 170 ----GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi~ 185 (403)
...+..+....+.++.
T Consensus 143 ~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 143 IQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp CCSCHHHHHHHHHHTTCCEE
T ss_pred ceeCHHHHHHHHHHcCCEEE
Confidence 2334455566677663
No 219
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.47 E-value=0.00041 Score=59.56 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
.-|+++|.+|+||||+...|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999997775
No 220
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.46 E-value=0.00037 Score=61.60 Aligned_cols=112 Identities=25% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+..-|+++|.+||||||+...|. +.+.. .. .| ..+......
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~---~~-----------t~~~~~~~~---------------- 68 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP-----------TIGFNVETV---------------- 68 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC------SSCCE--EE---EE-----------ETTEEEEEE----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHH------hCCcc--cc---CC-----------cCceeEEEE----------------
Confidence 345668999999999999997774 21211 10 11 011111100
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||......... .. .-.++.+++|+|+... ......+..+.. .-...-+|+||+|
T Consensus 69 -~~~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 69 -EYKNICFTVWDVGGQDKIRPLWR----HY--FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp -EETTEEEEEEECC-----CTTHH----HH--HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHhHHHHHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 01467899999999743221111 11 1245889999998654 222222222221 1233458999999
Q ss_pred CCCc
Q 015657 166 GDSR 169 (403)
Q Consensus 166 ~~~~ 169 (403)
....
T Consensus 142 l~~~ 145 (192)
T 2b6h_A 142 MPNA 145 (192)
T ss_dssp STTC
T ss_pred CCCC
Confidence 7543
No 221
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.46 E-value=0.00032 Score=72.98 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=39.0
Q ss_pred CcEEEEeCCCCccccHH-------hHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 98 VDVVIVDTAGRLQIDKA-------MMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~-------l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
..++||||||....... ......... ..++.+++|+|+.. .......+..+...-...-+|+||+|..
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 36899999998641110 111111111 23588999999943 3444444444433222355899999976
Q ss_pred Cc
Q 015657 168 SR 169 (403)
Q Consensus 168 ~~ 169 (403)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 222
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.46 E-value=0.0006 Score=57.73 Aligned_cols=66 Identities=21% Similarity=0.029 Sum_probs=36.3
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---h-cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---I-EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~-~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||....... .. ... ...+.+++|+|........ .....+. . .-...-+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~-~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAM-RD---LYM--KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTH-HH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHH-HH---HHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 3578999999996543221 11 111 1248889999986543222 2211121 1 112344899999964
No 223
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.00027 Score=61.94 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=38.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~ 166 (403)
.++.+.|+||||......... . ..-..+.+++|+|+........ ....+.. .-...-+|+||+|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWE----H--YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGG----G--GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHH----H--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 357899999999654321111 1 1123588999999966533322 2222221 11234489999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 139 ~~ 140 (190)
T 2h57_A 139 RD 140 (190)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 224
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.46 E-value=0.00028 Score=61.26 Aligned_cols=82 Identities=20% Similarity=0.072 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---H---HHhhhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---V---TTFNIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~---~~~~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||...... .... ..-.++.+++|+|+......... . ......-...-+|+||+|....
T Consensus 58 ~~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRS----VTRS--YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131 (186)
T ss_dssp EEEEEEEEECCSGGGHH----HHHT--TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHHHH----HHHH--HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 36899999999643211 1111 12245889999998655433221 1 1121222234589999996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 132 EVTFLEASRFAQENELMF 149 (186)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 123344445556554
No 225
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.44 E-value=0.0002 Score=63.48 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+...|+++|.+||||||+...|.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 34568899999999999997775
No 226
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=0.00029 Score=63.13 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||.-.. ..+. ......++.+++|+|+........ ....+ ...-...-+|.||+|....
T Consensus 74 ~~~l~l~Dt~G~~~~-----~~~~-~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 74 KVKLQIWDTAGQERF-----RSIT-QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp EEEEEEEEECCSGGG-----HHHH-GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHH-----HHHH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 468999999996432 1111 111224588999999865543321 11222 1122234588899996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 148 ~v~~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 148 EVSQQRAEEFSEAQDMYY 165 (201)
T ss_dssp SSCHHHHHHHHHHHTCCE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233344455566665
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.44 E-value=0.00045 Score=67.01 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
.++++++|++|+||||++..+|.. .|.+|++++++...+ +..+. ......+....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~--------------v~~~~----~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP--------------LSGYN----TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS--------------STTCB----CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh--------------hhhhh----cCHHHHHHHHHHHHh
Confidence 467889999999999999999876 578898888721111 01111 234444544555554
Q ss_pred hCCCcEEEEeCCCCcc
Q 015657 95 KKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~ 110 (403)
. +++||||.-..+.
T Consensus 182 ~--~~LLVIDsI~aL~ 195 (331)
T 2vhj_A 182 Q--HRVIVIDSLKNVI 195 (331)
T ss_dssp H--CSEEEEECCTTTC
T ss_pred h--CCEEEEecccccc
Confidence 3 3499999977664
No 228
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.43 E-value=0.00058 Score=57.96 Aligned_cols=83 Identities=6% Similarity=-0.138 Sum_probs=39.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc----CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE----IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~----~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||...... +.. .. ....+.+++|+|.......... ...+... -.+.-+|.||+|...
T Consensus 47 ~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRW-LPG---HC--MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEEECCCCccchh-hhh---hh--hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 457889999999653211 110 11 1234788999998655333222 2222111 123458899999643
Q ss_pred c----hhHHHHHHHHhCCCe
Q 015657 169 R----GGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~----~~~~~~~~~~~g~pi 184 (403)
. ...+.......+.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKF 140 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEE
T ss_pred ccccCHHHHHHHHHHhCCcE
Confidence 2 233344555566655
No 229
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00025 Score=64.14 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR- 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~- 169 (403)
.+.+.|+||||........ .. ..-..+.+++|+|.......... ...+.. .-...-+|+||+|....
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAIT----SA--YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EEEEEEECCTTTTTTTCCC----GG--GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred EEEEEEEECCCccchhhhH----HH--HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4789999999964321110 00 11235788999998655433222 222221 12234588899996431
Q ss_pred ---hhHHHHHHHHhCCCe
Q 015657 170 ---GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi 184 (403)
...+.......+.++
T Consensus 135 ~v~~~~~~~~~~~~~~~~ 152 (223)
T 3cpj_B 135 AVPTEESKTFAQENQLLF 152 (223)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 223344445556554
No 230
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=0.00033 Score=62.57 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH----HHHhh---hcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL----VTTFN---IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~----~~~~~---~~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||......... ......+.+++|+|.......... ...+. ...+ .-+|+||+|....
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGG------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 47899999999653321100 011235888999998655333222 11222 2333 3489999997543
No 231
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.41 E-value=0.00019 Score=62.25 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=59.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.++..|+++|.+||||||+...|. +.+.. . +.| ..+......
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~---~~~-----------t~~~~~~~~---------------- 57 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ------IGEVV--T---TKP-----------TIGFNVETL---------------- 57 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC------CSEEE--E---ECS-----------STTCCEEEE----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHh------cCCcC--c---cCC-----------cCccceEEE----------------
Confidence 456678999999999999997665 22321 1 111 111111110
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||......... . ....++.+++|+|+... +........+.. .-...-+|+||+|
T Consensus 58 -~~~~~~~~i~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (183)
T 1moz_A 58 -SYKNLKLNVWDLGGQTSIRPYWR----C--YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130 (183)
T ss_dssp -EETTEEEEEEEEC----CCTTGG----G--TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHhHHHHHH----H--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCC
Confidence 01357899999999754321110 0 11235788999998543 333333333321 2233558999999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 131 l~~ 133 (183)
T 1moz_A 131 QPG 133 (183)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 232
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.40 E-value=0.00079 Score=58.75 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+...|+++|.+||||||+...|. +.....+. | ..+......
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~-----~-----------t~g~~~~~~---------------- 55 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA------SEDISHIT-----P-----------TQGFNIKSV---------------- 55 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC------CSCCEEEE-----E-----------ETTEEEEEE----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHh------cCCCCccc-----C-----------cCCeEEEEE----------------
Confidence 345668999999999999997775 22221111 1 111111110
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||...... ..... ...++.+++|+|+.... ........+.. .-.+.-+|.||+|
T Consensus 56 -~~~~~~l~i~Dt~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (181)
T 1fzq_A 56 -QSQGFKLNVWDIGGQRKIRP----YWRSY--FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128 (181)
T ss_dssp -EETTEEEEEEECSSCGGGHH----HHHHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHHHHH----HHHHH--hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcC
Confidence 01367899999999653211 11111 12458899999986542 22222222211 1123458899999
Q ss_pred CCCc
Q 015657 166 GDSR 169 (403)
Q Consensus 166 ~~~~ 169 (403)
....
T Consensus 129 l~~~ 132 (181)
T 1fzq_A 129 LLTA 132 (181)
T ss_dssp STTC
T ss_pred cccC
Confidence 7543
No 233
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.40 E-value=0.00047 Score=61.11 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhc----CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE----IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~----~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||......... ......+.+++|+|......... ....+... -...-+|+||+|...
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPY------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCG------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred EEEEEEEEECCCccchHHHHH------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 467899999999653211100 11123588899999865533322 22222211 123458899999642
Q ss_pred ----chhHHHHHHHHhCCCe
Q 015657 169 ----RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ----~~~~~~~~~~~~g~pi 184 (403)
....+..+....+.|+
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~ 163 (201)
T 3oes_A 144 EREVQAVEGKKLAESWGATF 163 (201)
T ss_dssp GCCSCHHHHHHHHHHHTCEE
T ss_pred ccccCHHHHHHHHHHhCCeE
Confidence 2233455666677766
No 234
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.40 E-value=0.0015 Score=57.09 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+.+|+++|.+||||||++..|+..+ | ..+++.|
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 356899999999999999998888766 4 3456765
No 235
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.39 E-value=0.00017 Score=64.54 Aligned_cols=43 Identities=35% Similarity=0.651 Sum_probs=37.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
..++.+|+++|++||||||++..|+..+...|..+..+|.|..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3567999999999999999999999999877887778887743
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.39 E-value=0.00013 Score=63.93 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+.+|+++|++||||||++..|+..|...|.+..+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 46899999999999999999999998888666666654
No 237
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.38 E-value=0.00023 Score=61.60 Aligned_cols=82 Identities=12% Similarity=0.004 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh----hcCCeeEEEEccCCCCC-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN----IEIGITGAILTKLDGDS- 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~----~~~~i~GvIlNk~D~~~- 168 (403)
.+.+.|+||||...... +.. . .....+.+++|+|.......... ...+. ..-...-+|.||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSI-FPQ---T--YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEEEEECCCCCTTCC-CCG---G--GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred EEEEEEEeCCCchhhhH-HHH---H--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 47789999999654311 000 0 11135888999998654333222 11221 11123448899999642
Q ss_pred ---chhHHHHHHHHhCCCe
Q 015657 169 ---RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi 184 (403)
....+.......+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (181)
T 3t5g_A 127 RVISYEEGKALAESWNAAF 145 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred ceecHHHHHHHHHHhCCcE
Confidence 2234455666677665
No 238
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00037 Score=66.41 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=32.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
...|.+|+++|++||||||++..|+..+. .....|++|.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 45689999999999999999998886552 245688998654
No 239
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.37 E-value=0.00037 Score=61.93 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++++.|+||||...... +. ... ...++.+++|+|+.... .+......+.. .-.+.-+|.||+|...
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARR-VW---KNY--LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp TTEEEEEEEECC----CC-GG---GGG--GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCcHhhHH-HH---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 357899999999643211 10 011 12458899999986543 22222222211 1123458899999754
No 240
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.36 E-value=0.00068 Score=60.53 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH-HHHHH---HHh-h-----hcCCeeEEEEccCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALV---TTF-N-----IEIGITGAILTKLDG 166 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~-~~~~~---~~~-~-----~~~~i~GvIlNk~D~ 166 (403)
.+.+.|+||||.......+. ..+ ...++.+++|+|+..... ..... ... . ..-.+.-+|.||+|.
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLL---DRF--KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHH---HHH--GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred ccEEEEEECCCChhHHHHHH---HHH--HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 57899999999753221111 111 223578899999965322 22221 111 1 112234589999996
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 128 ~~ 129 (214)
T 2fh5_B 128 AM 129 (214)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 241
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.36 E-value=0.00037 Score=61.28 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH----Hhhhc--CCeeEEEEccCCCCC-
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIE--IGITGAILTKLDGDS- 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~----~~~~~--~~i~GvIlNk~D~~~- 168 (403)
..+.+.|+||||.-...... . .....++.+++|+|............ .+... -...-+|.||+|...
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLR----P--LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTG----G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEEEEEEECCCcHHHHHHh----H--hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 35678999999964321100 0 11124588999999976654433211 11111 123458899999542
Q ss_pred -----chhHHHHHHHHhCCC
Q 015657 169 -----RGGAALSVKEVSGKP 183 (403)
Q Consensus 169 -----~~~~~~~~~~~~g~p 183 (403)
....+.......+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTCS
T ss_pred CCCcccHHHHHHHHHhcCCC
Confidence 223445566667766
No 242
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.36 E-value=0.00024 Score=63.72 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=38.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
..++.+++++|++||||||++..|+..+...|.+|.+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 34678999999999999999999999998888899999888654
No 243
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.36 E-value=0.00046 Score=60.82 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHhh----hcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFN----IEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~~----~~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... +. .. ....++.+++|+|+..... .......+. ..-.+.-+|.||+|...
T Consensus 65 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARR-LW---KD--YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTEEEEEEECCCSGGGTT-SG---GG--GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHH-HH---HH--HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 357899999999753211 10 01 1124588999999965432 222222221 11223458999999754
No 244
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.35 E-value=0.00029 Score=60.87 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=33.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||......... ...-..+.+++|+|+.......... ..+. ...+ .-+|+||+|..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR 125 (182)
T ss_dssp ----CEEECCCC-CTTTTTGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCChhhhhhHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence 356778999999643211100 1112358899999986554332221 2222 2233 44889999954
No 245
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.35 E-value=0.00019 Score=73.13 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=35.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHH-hhhcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTT-FNIEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~-~~~~~~i~GvIlNk~D 165 (403)
+++.+.|+||||...+...+. .....+|.+++|+|+..+. .....+.. ....++..-|++||+|
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMI------NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CCeEEEEEECCCcHHHHHHHH------hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 467899999999754322211 1223468999999996542 12222221 1222332347899999
Q ss_pred CC
Q 015657 166 GD 167 (403)
Q Consensus 166 ~~ 167 (403)
..
T Consensus 193 l~ 194 (467)
T 1r5b_A 193 EP 194 (467)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 246
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.35 E-value=0.00034 Score=76.41 Aligned_cols=64 Identities=19% Similarity=0.368 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHH-hhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTT-FNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~-~~~~~~i~GvIlNk~D~~ 167 (403)
.++.+.||||||...+.......+ -.++.+++|+|+..+ ++. ..... ....++ .-+|+||+|..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l------~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDTIEGVCVQTE-TVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHH------HTCSEEEEEEETTTBSCHHHH-HHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHH------HhCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-eEEEEECCCcc
Confidence 368899999999876544332222 235899999999544 322 22222 223333 35899999964
No 247
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=0.00023 Score=62.26 Aligned_cols=40 Identities=45% Similarity=0.711 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
++.+|+++|..||||||++..|+..|...|+++..+|.|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 5678999999999999999999999987898888888763
No 248
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.34 E-value=0.00011 Score=78.71 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+..|+|+|.+|+||||+...|. |.+++.++.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLl------g~~~~~v~~~ 100 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALI------GENLLPSDVN 100 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH------TSSCSCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCCCCCCC
Confidence 45668999999999999998888 6666544443
No 249
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.33 E-value=0.00078 Score=58.42 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA 36 (403)
...|+++|.+||||||+...|+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999997776
No 250
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.33 E-value=0.00045 Score=70.71 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=39.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
+++.+.|+||||... ....+. .....+|.+++|+|+.. .++...........+++ -+++||+|...
T Consensus 71 ~~~~i~iiDtPGh~~----~~~~~~--~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHAD----LIRAVV--SAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAG 139 (482)
T ss_dssp TTEEEEECCCSSHHH----HHHHHH--HHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC
T ss_pred CCEEEEEEECCChHH----HHHHHH--HHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCccc
Confidence 457899999999632 222222 22234689999999965 23322222111223444 58999999764
No 251
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.32 E-value=0.0016 Score=67.22 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhhcCCeeEEEEccCCCCCch--
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNIEIGITGAILTKLDGDSRG-- 170 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~~~~i~GvIlNk~D~~~~~-- 170 (403)
..+.+.|+||||.-.... +.. .+ .-.++.+++|+|+.......... ..+....+ .-+|.||+|.....
T Consensus 96 ~~~~~~i~Dt~G~e~~~~-~~~---~~--l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v 168 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHA-SHQ---FF--MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNI 168 (535)
T ss_dssp TTCEEEEECCCSCCTTTT-TCH---HH--HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCC
T ss_pred ceEEEEEEECCcHHHHHH-HHH---HH--ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC-EEEEEECCCccccccc
Confidence 368899999999533211 111 11 11358889999996554433333 33333334 34899999965322
Q ss_pred --hHHHHHHHHhCCCeEEee
Q 015657 171 --GAALSVKEVSGKPIKLVG 188 (403)
Q Consensus 171 --~~~~~~~~~~g~pi~fig 188 (403)
..+.......+.|+..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 169 EQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp CHHHHHHHCGGGTTCEEECC
T ss_pred CHHHHHHHHHhcCCceEEEe
Confidence 223334445677775543
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.32 E-value=0.00049 Score=59.00 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+..+++++|++|+||||++..++..+...|+++..+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 456789999999999999999999998888888888765
No 253
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.32 E-value=0.00022 Score=69.79 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=43.1
Q ss_pred CcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEeccc-----H-HHHHHHH---HHhhhc--CCeeEEEEcc
Q 015657 98 VDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT-----G-QEAAALV---TTFNIE--IGITGAILTK 163 (403)
Q Consensus 98 ~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~-----g-~~~~~~~---~~~~~~--~~i~GvIlNk 163 (403)
..++|+||||.... ...+.... +..+-.++.+++|+|+.. . ++..... ..+... -...-+|+||
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~f--l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK 283 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQF--LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK 283 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHH--HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred ceEEEecCCCCcccccccchhHHHH--HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence 68999999996421 11121111 111123588899999853 2 2222222 222211 1234589999
Q ss_pred CCCCCchhHHHHHHHHhC
Q 015657 164 LDGDSRGGAALSVKEVSG 181 (403)
Q Consensus 164 ~D~~~~~~~~~~~~~~~g 181 (403)
+|.......+..+.+.++
T Consensus 284 ~Dl~~~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 284 MDMPEAAENLEAFKEKLT 301 (342)
T ss_dssp TTSTTHHHHHHHHHHHCC
T ss_pred ccCCCCHHHHHHHHHHhh
Confidence 997654444455555554
No 254
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.31 E-value=0.0065 Score=52.48 Aligned_cols=19 Identities=42% Similarity=0.676 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.+||||||+...|.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7889999999999998776
No 255
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.0036 Score=55.52 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=30.1
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+...++.+|+++|.+||||||++..|+..+ |. .++++|
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 445678999999999999999998888654 43 466766
No 256
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.30 E-value=2.4e-05 Score=69.62 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=33.7
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||......... ...-..+.+++|+|+......... ...+.. .-...-+|+||+|..
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSC------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 46899999999643211100 011235888999998654332222 222221 112344788999964
No 257
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.29 E-value=0.00068 Score=58.93 Aligned_cols=111 Identities=21% Similarity=0.314 Sum_probs=60.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+...|+++|.+||||||+...|. +.+. ..+.|. .+......
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~------~~~~-----~~~~~t-----------~~~~~~~~---------------- 57 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFN------GEDV-----DTISPT-----------LGFNIKTL---------------- 57 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHT------TCCC-----SSCCCC-----------SSEEEEEE----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh------cCCC-----Cccccc-----------CccceEEE----------------
Confidence 455678999999999999997776 2221 111111 11111100
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||...... . .. .....++.+++|+|+... +.+......+.. .-...-+|+||+|
T Consensus 58 -~~~~~~~~~~Dt~G~~~~~~-~---~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 58 -EHRGFKLNIWDVGGQKSLRS-Y---WR--NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp -EETTEEEEEEEECCSHHHHT-T---GG--GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHhHHH-H---HH--HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence 01367899999999742111 0 00 111245889999998544 232222222211 1233558999999
Q ss_pred CCC
Q 015657 166 GDS 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 131 l~~ 133 (186)
T 1ksh_A 131 LPG 133 (186)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 258
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.29 E-value=0.001 Score=74.29 Aligned_cols=127 Identities=21% Similarity=0.212 Sum_probs=64.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+...|+++|..++||||++..|.....+.|.... .+ + ...+.. ......|+.+..... .+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f-~~---~--a~lD~~-~~ErerGITIdva~v-------------~f 354 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA-RA---F--DQIDNA-PEEKARGITINTSHV-------------EY 354 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSCE-------------EE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhcccccccc-cc---c--cccccc-cccccCceeEEEEEE-------------EE
Confidence 3466889999999999999999876655442110 00 0 001111 001112222111000 00
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HH--HHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~--~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
...++.+.|+||||...+ ...+ +.....+|.+++|+|+..+ +. ....+.. ..++..-|++||+|...
T Consensus 355 ~~~~~kI~IIDTPGHedF----~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp ECSSCEEEEEECCCHHHH----HHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCC
T ss_pred cCCCEEEEEEECCChHHH----HHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeeccccc
Confidence 124688999999996432 2211 1223356899999999543 22 2222221 23332347899999764
No 259
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.29 E-value=0.0015 Score=61.30 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
..|+++|.+|+||||+...|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999998775
No 260
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.29 E-value=0.00018 Score=66.82 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=35.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-----CCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-----~G~kVllVd~D~~r 55 (403)
..++.+|+|+|.+||||||++..|+..|.- .+++|.++++|-+-
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 456789999999999999999999887753 26788899999543
No 261
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.28 E-value=0.0001 Score=70.44 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=34.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
++.+|+|+|..||||||++..|+..|...|.++.++++|-+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467899999999999999999999888778889999999754
No 262
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.0034 Score=55.10 Aligned_cols=82 Identities=15% Similarity=0.038 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH------HHHHHhhh-cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNI-EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~------~~~~~~~~-~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||... ..... ... ...+.+++|+|+....... ..+..+.. .-...-+|+||+|...
T Consensus 74 ~~~~~~l~Dt~G~~~--~~~~~---~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 74 EVVSMEILDTAGQED--TIQRE---GHM--RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEEECCCCCC--CHHHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred EEEEEEEEECCCCCc--ccchh---hhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 357899999999754 11111 111 1248899999986543322 12222221 1122448999999643
Q ss_pred c----hhHHHHHHHHhCCCe
Q 015657 169 R----GGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ~----~~~~~~~~~~~g~pi 184 (403)
. ...+.......+.++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~ 166 (196)
T 2atv_A 147 SRQVSTEEGEKLATELACAF 166 (196)
T ss_dssp GCCSCHHHHHHHHHHHTSEE
T ss_pred ccccCHHHHHHHHHHhCCeE
Confidence 1 233444555566655
No 263
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.27 E-value=0.0006 Score=61.30 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=33.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||...... +. ... .-.++.+++|+|........... ..+ ....+ .-+|.||+|...
T Consensus 80 ~~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 152 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDR-LR---PLF--YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred EEEEEEEEECCCchhhhH-HH---HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence 346789999999643211 10 011 12357889999987654433322 112 12333 348899999754
Q ss_pred c
Q 015657 169 R 169 (403)
Q Consensus 169 ~ 169 (403)
.
T Consensus 153 ~ 153 (214)
T 2j1l_A 153 D 153 (214)
T ss_dssp C
T ss_pred c
Confidence 3
No 264
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.27 E-value=0.0017 Score=65.12 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+....|.+|+++|++||||||++..|+..+ ...+|+.|..
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 344568999999999999999998887543 3457787754
No 265
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00041 Score=68.76 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=66.6
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA 86 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~ 86 (403)
.+...+.+-..|+++|.|.|||||+-..|. |.++.+ +| + |.+ +.....|+ +.
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v--~~-~-pft-----T~~~~~g~--~~----------- 115 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLT------GTESEA--AE-Y-EFT-----TLVTVPGV--IR----------- 115 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHH------SBCCCG--GG-T-CSS-----CCCEEEEE--EE-----------
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHh------CCCCcc--cC-C-CCc-----eeeeeeEE--EE-----------
Confidence 344455556678999999999999998887 444321 11 1 111 11111111 11
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH----HhhhcC--Cee
Q 015657 87 KQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIEI--GIT 157 (403)
Q Consensus 87 ~~~l~~~~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~----~~~~~~--~i~ 157 (403)
..+..+.++||||...-. ..+.... +..+-.+|-+++|+|+.........+. .+...+ ...
T Consensus 116 --------~~~~~i~l~D~pGl~~~a~~~~~~g~~~--l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~ 185 (376)
T 4a9a_A 116 --------YKGAKIQMLDLPGIIDGAKDGRGRGKQV--IAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPP 185 (376)
T ss_dssp --------ETTEEEEEEECGGGCCC-----CHHHHH--HHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCC
T ss_pred --------eCCcEEEEEeCCCccCCchhhhHHHHHH--HHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCCh
Confidence 246789999999986431 1121111 112223588999999965533333322 222111 233
Q ss_pred EEEEccCCC
Q 015657 158 GAILTKLDG 166 (403)
Q Consensus 158 GvIlNk~D~ 166 (403)
-+++||.|.
T Consensus 186 ~i~~nK~d~ 194 (376)
T 4a9a_A 186 DILIKKKEK 194 (376)
T ss_dssp CEEEEECSS
T ss_pred hhhhhHhhh
Confidence 488999985
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.24 E-value=0.0013 Score=67.95 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc----------eE-eCC-CCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP----------VY-TAG-TEVK 81 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~----------v~-~~~-~~~~ 81 (403)
+..+++++|++|+||||++..++..+...|.+|+++...-.. .++.......+.+ .+ ... ....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 457899999999999999999999888889888777754221 1221111112221 11 111 1234
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEe
Q 015657 82 PSQIAKQGLEEAKKKNVDVVIVD 104 (403)
Q Consensus 82 ~~~~~~~~l~~~~~~~~D~VIID 104 (403)
..+..+.++..+...+++++|+|
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc
Confidence 55666666777666788999999
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.24 E-value=0.0021 Score=62.97 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~ 53 (403)
+..++.|+|++|+||||++..|+..++.. |-+|++|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45899999999999999999999877432 35878888754
No 268
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.24 E-value=0.00032 Score=61.33 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+..-|+++|.+||||||+...|. +.... . +.|. .+......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~---~~~t-----------~~~~~~~~---------------- 61 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH------LGDVV--T---TVPT-----------VGVNLETL---------------- 61 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC------CSCCE--E---ECSS-----------TTCCEEEE----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHH------cCCCC--C---cCCC-----------CceEEEEE----------------
Confidence 455668999999999999997763 21111 1 1110 11111110
Q ss_pred HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657 93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD 165 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D 165 (403)
...++.+.|+||||......... . ..-.++.+++|+|+... .........+.. .-...-+|+||+|
T Consensus 62 -~~~~~~~~~~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 134 (189)
T 2x77_A 62 -QYKNISFEVWDLGGQTGVRPYWR----C--YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134 (189)
T ss_dssp -EETTEEEEEEEECCSSSSCCCCS----S--SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTT
T ss_pred -EECCEEEEEEECCCCHhHHHHHH----H--HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCC
Confidence 01367899999999653221100 0 11245889999998543 333333333221 1233558999999
Q ss_pred CCCc
Q 015657 166 GDSR 169 (403)
Q Consensus 166 ~~~~ 169 (403)
....
T Consensus 135 l~~~ 138 (189)
T 2x77_A 135 LPDA 138 (189)
T ss_dssp STTC
T ss_pred CcCC
Confidence 7543
No 269
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.24 E-value=0.00024 Score=64.04 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=37.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~ 54 (403)
..++.+|+++|.+||||||++..|+..|. ..|+++.+++.|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34678999999999999999999999998 77988989987743
No 270
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.23 E-value=0.0021 Score=63.36 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=59.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 94 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~ 94 (403)
.++++++|.+|+||||+...|+ |..+ .+. |. + ..+. +...... .
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~------~~~~-~~~-~~--~-----~~T~----d~~~~~i-----------------~ 222 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVD-TK--L-----FTTM----SPKRYAI-----------------P 222 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHH------CC--------------------C----CSCEEEE-----------------E
T ss_pred CcEEEEECCCCCCHHHHHHHHH------CCCc-ccc-CC--c-----cccc----CCEEEEE-----------------E
Confidence 4568999999999999998887 4332 111 10 0 0000 1100000 0
Q ss_pred hCCCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH----HH----HHHHHHhhhcCCeeEEEEccC
Q 015657 95 KKNVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ----EA----AALVTTFNIEIGITGAILTKL 164 (403)
Q Consensus 95 ~~~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~----~~----~~~~~~~~~~~~i~GvIlNk~ 164 (403)
..+..+.++||||.+.. ...+...... +.....++.+++|+|+.... .. ...+..+...-...-+|.||+
T Consensus 223 ~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~ 302 (364)
T 2qtf_A 223 INNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKI 302 (364)
T ss_dssp ETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECG
T ss_pred ECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECC
Confidence 13467899999997542 2222222211 22233468889999985432 11 122222221112345889999
Q ss_pred CCCC
Q 015657 165 DGDS 168 (403)
Q Consensus 165 D~~~ 168 (403)
|...
T Consensus 303 Dl~~ 306 (364)
T 2qtf_A 303 DKIN 306 (364)
T ss_dssp GGCC
T ss_pred CCCC
Confidence 9654
No 271
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.23 E-value=0.001 Score=58.61 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||...... +.. . .....+.+++|+|........... ..+. ...+ .-+|.||+|...
T Consensus 67 ~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDK-LRP---L--CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLRE 138 (201)
T ss_dssp EEEEEEEECCCSTTCSS-SGG---G--GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCHHHHH-HhH---h--hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhh
Confidence 46778999999754321 100 0 122458899999986654333322 1122 2333 348899999643
No 272
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.23 E-value=0.0094 Score=57.36 Aligned_cols=171 Identities=17% Similarity=0.187 Sum_probs=83.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-------eEeCCCCCCHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQIA 86 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~~~~~~ 86 (403)
+..+++++|..||||||+...|+... .|+++.++..|.-. -.++.. .. ...+.. ++.......-...+
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~-i~idg~-~l-~~~~~~~~el~~gCicc~~~~~~~~~l 77 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGE-VSVDDQ-LI-GDRATQIKTLTNGCICCSRSNELEDAL 77 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCS-CCEEEE-EE-CTTSCEEEEETTSCEEECTTSCHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcc-cCccHH-HH-hCCCCCEEEECCCceEEcccHHHHHHH
Confidence 35688999999999999998887653 68899998877321 111100 00 000001 11111111222223
Q ss_pred HHHHHHHHhC--CCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHH-hhhcCCeeEEE
Q 015657 87 KQGLEEAKKK--NVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAI 160 (403)
Q Consensus 87 ~~~l~~~~~~--~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~-~~~~~~i~GvI 160 (403)
...+...... .+|++++|+.+.... ..+...+ .........+.++-++|+............ ........-+|
T Consensus 78 ~~l~~~~q~~~~~~~~~v~E~~~l~~p-~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 78 LDLLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTCCH-HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HHHHhHHhcCCCCCCEEEEeCCCCCCH-HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 3332111223 359999999886421 1111111 112222223566777888543322221111 11122344577
Q ss_pred EccCCCCCchhHHHHHHHHh--CCCeEEeecc
Q 015657 161 LTKLDGDSRGGAALSVKEVS--GKPIKLVGRG 190 (403)
Q Consensus 161 lNk~D~~~~~~~~~~~~~~~--g~pi~fig~g 190 (403)
+||.|.......+....... +.+|.++..+
T Consensus 157 l~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~ 188 (318)
T 1nij_A 157 LTKTDVAGEAEKLHERLARINARAPVYTVTHG 188 (318)
T ss_dssp EECTTTCSCTHHHHHHHHHHCSSSCEEECCSS
T ss_pred EECcccCCHHHHHHHHHHHhCCCCeEEEeccc
Confidence 89999664323344433333 4566555554
No 273
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.22 E-value=0.0018 Score=57.38 Aligned_cols=83 Identities=10% Similarity=-0.057 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh----cCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI----EIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~----~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||+|.......+.. ... -.++.+++|.|......... ....+.. .-.+.-+|.||+|....
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~---~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRD---HCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EEEEEEEecCCCccchhhhHH---Hhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 567889999997543221111 111 13488899999865433222 2222211 11223488999996532
Q ss_pred ----hhHHHHHHHHhCCCe
Q 015657 170 ----GGAALSVKEVSGKPI 184 (403)
Q Consensus 170 ----~~~~~~~~~~~g~pi 184 (403)
...+..+....+.++
T Consensus 146 ~~v~~~~~~~~a~~~~~~~ 164 (195)
T 3cbq_A 146 REVSLEEGRHLAGTLSCKH 164 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred CCcCHHHHHHHHHHhCCEE
Confidence 123344444555544
No 274
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.22 E-value=0.00014 Score=73.24 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred cEEEEeCCCCccccHH---hHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh--HH
Q 015657 99 DVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--AA 173 (403)
Q Consensus 99 D~VIIDtpg~l~~d~~---l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~--~~ 173 (403)
.+.|+||||....... ........ ...++.+++|+|+............+...-...-+|+||+|...... ..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~--l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~ 161 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRV--FYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELK 161 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHH--HTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHH
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHH--HhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHH
Confidence 7999999997644211 11111111 22468899999994333333333333332223458999999654322 22
Q ss_pred HHHHHHhCCCeE
Q 015657 174 LSVKEVSGKPIK 185 (403)
Q Consensus 174 ~~~~~~~g~pi~ 185 (403)
..+.+..+.|+.
T Consensus 162 ~~l~~~~g~~v~ 173 (423)
T 3qq5_A 162 GLYESRYEAKVL 173 (423)
T ss_dssp HHSSCCTTCCCC
T ss_pred HHHHHHcCCCEE
Confidence 333334455553
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.21 E-value=0.001 Score=78.02 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=57.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhcc-CCceEeCCCCCCHHHHHHHHH-
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGL- 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~-gv~v~~~~~~~~~~~~~~~~l- 90 (403)
+++++.++|++|+||||+|.+++....++|.+|++++++-. .+.. ...++... .+.+.. .++.+.+.+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~----~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQ----PDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEEC----CSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeec----CChHHHHHHHHH
Confidence 57899999999999999999999999999999999998732 2222 22222111 122221 22333332333
Q ss_pred HHHHhCCCcEEEEeCCC
Q 015657 91 EEAKKKNVDVVIVDTAG 107 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg 107 (403)
..++...+|+||||.-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 33445789999999974
No 276
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.21 E-value=0.00058 Score=62.37 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=35.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
.+..+.+++|.-|+||||.+..++..+..+|++|+++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 445889999999999999999999999999999999863
No 277
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.21 E-value=0.0036 Score=64.70 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=74.5
Q ss_pred CEEEEEE-cC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhh-------------------HHHHHHhhhccC
Q 015657 15 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-------------------IDQLVILGEQVG 70 (403)
Q Consensus 15 ~~iI~v~-G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~-------------------~~~l~~~~~~~g 70 (403)
.+.|+++ |. +++||+++++.|++.|+++|++|..+..|||- |.. .++.. .....+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~-~~~~~~ 81 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGH-YERFIR 81 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHH-HHHHCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhcc-ceeeec
Confidence 4678898 77 99999999999999999999999999999652 111 01100 000111
Q ss_pred CceEe------------------CCCCC----C----HHHHHHHHHHHHHhCCCcEEEEeCCCCccc--cHHhHHHHHHH
Q 015657 71 VPVYT------------------AGTEV----K----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDV 122 (403)
Q Consensus 71 v~v~~------------------~~~~~----~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~--d~~l~~el~~i 122 (403)
+.+-+ .+.+. . -.+.+++.+..+. .+||+|||+.+|...+ +-.++..+.++
T Consensus 82 ~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di~~~~~~~~~~q~ 160 (545)
T 1s1m_A 82 TKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDIESLPFLEAIRQM 160 (545)
T ss_dssp SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSSTTHHHHHHHHHH
T ss_pred eeecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhhhChHHHHHHHHH
Confidence 10000 00111 1 1223466677764 6899999999988754 44566677777
Q ss_pred hhhcCCceEEEE
Q 015657 123 KRVLNPTEVLLV 134 (403)
Q Consensus 123 ~~~~~~~~vllV 134 (403)
...+....++++
T Consensus 161 ~~~~~~~~~~~~ 172 (545)
T 1s1m_A 161 AVEIGREHTLFM 172 (545)
T ss_dssp HHHHCTTSEEEE
T ss_pred hHhhCcCcEEEE
Confidence 777665555443
No 278
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.21 E-value=0.00086 Score=66.98 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=36.9
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc----HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~----g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+||||... ....+ +..+..+|.+++|+|+.. .+... .+..+. ......-+++||+|...
T Consensus 83 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHEA----LMTTM--LAGASLMDGAILVIAANEPCPRPQTRE-HLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHHH----HHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChHH----HHHHH--HhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcCCCcEEEEEECccCCC
Confidence 6799999999642 22221 122234689999999963 33322 222221 22333447799999754
No 279
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.20 E-value=0.0036 Score=64.80 Aligned_cols=119 Identities=13% Similarity=0.278 Sum_probs=74.9
Q ss_pred CEEEEEE-cC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhh-------------------HHHHHHhhhccC
Q 015657 15 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-------------------IDQLVILGEQVG 70 (403)
Q Consensus 15 ~~iI~v~-G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~-------------------~~~l~~~~~~~g 70 (403)
.+.|+|+ |. +++||+++++.|++.|+++|++|..+..|||- |.. .++-. ...-.+
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~-~~~~~~ 90 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGH-YERFLD 90 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHH-HHHHHT
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhcc-HHhcCC
Confidence 4788999 77 99999999999999999999999999999652 111 00000 000000
Q ss_pred C------------------------ceEeCCCCC--CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657 71 V------------------------PVYTAGTEV--KPSQIAKQGLEEAKK-KNVDVVIVDTAGRLQI--DKAMMDELKD 121 (403)
Q Consensus 71 v------------------------~v~~~~~~~--~~~~~~~~~l~~~~~-~~~D~VIIDtpg~l~~--d~~l~~el~~ 121 (403)
+ +.+...... .-.+.+++.+..+.. .+||+|||+.+|...+ .-.++..+.+
T Consensus 91 ~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~di~~~~~~~~~rq 170 (550)
T 1vco_A 91 MDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLEAIRQ 170 (550)
T ss_dssp SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHHHHHT
T ss_pred cccCCCCCeeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECCCChhHhhhHHHHHHHHH
Confidence 0 001000011 123345666766642 2899999999888764 4456777777
Q ss_pred HhhhcCCceEEEE
Q 015657 122 VKRVLNPTEVLLV 134 (403)
Q Consensus 122 i~~~~~~~~vllV 134 (403)
+...+....++++
T Consensus 171 ~~~~~~~~~~~~~ 183 (550)
T 1vco_A 171 FRFDEGEGNTLYL 183 (550)
T ss_dssp HHHHHCTTSEEEE
T ss_pred HhHhhCcCCEEEE
Confidence 7777765555444
No 280
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.011 Score=54.02 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=32.7
Q ss_pred ccccc-CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657 7 ELVFA-KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49 (403)
Q Consensus 7 ~l~~~-~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV 49 (403)
++.+. ..++.+|++.|++||||||++..|+..|.. |..|...
T Consensus 17 ~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 17 NLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp ---CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34443 336789999999999999999999999988 8888544
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.17 E-value=0.00092 Score=77.47 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=84.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCce---EeCCCCCCHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQG 89 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v---~~~~~~~~~~~~~~~~ 89 (403)
+.++|-+.|+.|+||||+|.++++...++|..+++||+.-. .|.+ ....|+++ +...+ ....+.+.-+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-------~~~~Gv~~~~l~~~~p-~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVDIDNLLCSQP-DTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-------HHHTTCCGGGCEEECC-SSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-------HHHcCCCHHHeEEeCC-CcHHHHHHHH
Confidence 34899999999999999999999999999999999998622 1222 23334432 22211 1223333333
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCC---
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG--- 166 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~--- 166 (403)
-..+++..+|+|+||....+....+.-.++-+ ..+=+.+..-..+.+.+..+....+...+++|.+..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~---------~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~ 1572 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAALTPKAEIEGEIGD---------SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 1572 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCTTTTC----------------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC----
T ss_pred HHHHHcCCCCEEEEccHHhCCccccccccccc---------cchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccc
Confidence 33445678999999997766432222211100 011111111122233333444455777788888752
Q ss_pred -------CCchhHHHHHHHHhCC
Q 015657 167 -------DSRGGAALSVKEVSGK 182 (403)
Q Consensus 167 -------~~~~~~~~~~~~~~g~ 182 (403)
.+.+|.++..-....+
T Consensus 1573 ~~~~~~~~~~~g~al~~~~~~r~ 1595 (1706)
T 3cmw_A 1573 VMFGNPETTTGGNALKFYASVRL 1595 (1706)
T ss_dssp ----CCCCBSSCSHHHHHEEEEE
T ss_pred eecCCCccccCcceeeeeeeeee
Confidence 3556666655443333
No 282
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.16 E-value=0.00064 Score=73.12 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCcccc-----H---HhHHHH-HHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccC
Q 015657 97 NVDVVIVDTAGRLQID-----K---AMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 164 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d-----~---~l~~el-~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~ 164 (403)
..+++||||||..... . ....++ ..... -.++-+++|+|+... ++....+..+...-...-+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 4579999999987621 1 112221 11211 234677889998532 344455555554444556899999
Q ss_pred CCCCchh
Q 015657 165 DGDSRGG 171 (403)
Q Consensus 165 D~~~~~~ 171 (403)
|......
T Consensus 228 Dlv~~~~ 234 (772)
T 3zvr_A 228 DLMDEGT 234 (772)
T ss_dssp TSSCTTC
T ss_pred ccCCcch
Confidence 9765443
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.16 E-value=0.00044 Score=61.81 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
.++.+|+++|.+||||||++..|+..|...|+.|..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 35678999999999999999999999998898885443
No 284
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.16 E-value=0.0016 Score=68.13 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
..+++++|.+|+||||++..++..+...|++|+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 467899999999999999999999999999998765
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.0046 Score=55.01 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.++.+|+++|++||||||++..|+..+ | ..+++.|...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~ 64 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFH 64 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccccc
Confidence 456789999999999999999998777 4 3467777654
No 286
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.14 E-value=0.00048 Score=70.16 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||...... ..... ......-.++.+++|+|+... ............ ...-+|+||+|...
T Consensus 270 ~g~~v~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~ 344 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSD-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE 344 (462)
T ss_dssp TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred CCEEEEEEECCccccchh-HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence 467899999999743211 11110 111122346889999998533 222223333322 24458999999653
No 287
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.0016 Score=57.05 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS 168 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~ 168 (403)
.+.+.|+||||....... .. ......+.+++|+|........... ..+. ...+ .-+|.||+|...
T Consensus 65 ~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRL-RP-----LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp EEEEEEECCCCSSSSTTT-GG-----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEECCCCcchhHH-HH-----HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 478899999997543211 00 1122358899999986554332221 2222 2333 448999999754
No 288
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.13 E-value=0.0011 Score=69.62 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=36.6
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGD 167 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~ 167 (403)
+.+.|+||||...+..... .....+|.+++|+|+..+ ++. ..+.... ..++ .-+++||+|..
T Consensus 70 ~~i~liDTPGhe~F~~~~~------r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~~~vP-iIVViNKiDl~ 135 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQ-EALNILRMYRTP-FVVAANKIDRI 135 (594)
T ss_dssp CEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHTTCC-EEEEEECGGGS
T ss_pred CCEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccHhHH-HHHHHHHHcCCe-EEEEecccccc
Confidence 4699999999754422111 112235889999999663 332 2222222 2333 45899999964
No 289
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.11 E-value=0.0023 Score=64.47 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
.+..++++|.+||||||+...|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHh
Confidence 34668999999999999998877
No 290
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.08 E-value=0.00066 Score=60.79 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+||||...... +.. . ....++.+++|+|+......... +......-...-+|+||+|...
T Consensus 61 ~~~~l~Dt~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAV-LKD---V--YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGGGTSC-CCH---H--HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCchhhch-HHH---H--HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 6799999999643221 111 0 11235889999999765433222 1112112123458999999754
No 291
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.07 E-value=0.00064 Score=61.20 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~ 169 (403)
..+.+.|+||||.-....... .. ....+.+++|+|.......... ...+. ...+ .-+|+||+|....
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRD----GY--YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHH----HH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 457899999999643211111 11 1135889999999665433222 12222 2333 3489999996432
Q ss_pred h--hHHHHHHHHhCCCe
Q 015657 170 G--GAALSVKEVSGKPI 184 (403)
Q Consensus 170 ~--~~~~~~~~~~g~pi 184 (403)
. ..........+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQY 151 (221)
T ss_dssp SSCGGGCCHHHHHTCEE
T ss_pred cccHHHHHHHHHcCCEE
Confidence 1 12223344455554
No 292
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.06 E-value=0.0017 Score=76.31 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=58.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l 90 (403)
+.+++.|.|++|+||||++.++|...++.|.+|+++++.-...... ....+++ ++... .....+ +...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~------a~~lGvd~~~L~I~~-~~~~e~-il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQ-PDTGEQ-ALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH------HHHTTCCTTTCEEEC-CSSHHH-HHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH------HHHcCCCHHHeEEeC-CCCHHH-HHHHH
Confidence 5689999999999999999999999999999999999885332221 2222322 11111 122233 33333
Q ss_pred HH-HHhCCCcEEEEeCCCCcc
Q 015657 91 EE-AKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~-~~~~~~D~VIIDtpg~l~ 110 (403)
+. .+...+++||||.-..+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHhcCCcEEEECCHHHhh
Confidence 32 234689999999866554
No 293
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.06 E-value=0.0014 Score=57.73 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHH---HHHh---hhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL---VTTF---NIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~---~~~~---~~~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||........... ... .-.++.+++|+|.... +..... +... .... ..-+|.||+|..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~-~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~-piilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDY-EMI--FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM-NFEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCH-HHH--HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhc-ccc--cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC-cEEEEEeccccC
Confidence 46889999999975432111000 011 1135889999999653 222222 2222 1122 344888999954
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 143 ~ 143 (196)
T 3llu_A 143 S 143 (196)
T ss_dssp C
T ss_pred c
Confidence 3
No 294
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.05 E-value=0.00089 Score=64.29 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+..++++|++|+||||++..++..+...+.++..++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 346689999999999999999999998888999988876
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.00069 Score=60.92 Aligned_cols=42 Identities=33% Similarity=0.455 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.++.+++|+|++||||||++..|+..+...|..+..|..|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 567899999999999999999999999866777888888754
No 296
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.04 E-value=0.00061 Score=70.01 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=59.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
++.+|++.|..++||||+...|...-...+. ..++.........
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-----------------------~~GIT~~i~~~~v------------- 46 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-----------------------AGGITQHIGAYHV------------- 46 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-----------------------BCCCCCCSSCCCC-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-----------------------CCCeeEeEEEEEE-------------
Confidence 4567899999999999999887642211111 0111100000000
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
..+++.+.|+||||.-.+..... .....+|.+++|+|+..+ + +....+. ...++ .-+++||+|..
T Consensus 47 ~~~~~~i~~iDTPGhe~f~~~~~------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~--~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFTSMRA------RGAQATDIVVLVVAADDGVMPQTIEAIQHAK--AAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp CTTSSCCCEECCCTTTCCTTSBC------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHH--HTTCC-EEEEEECSSSS
T ss_pred EECCEEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEeecccCccHHHHHHHHHHH--hcCce-EEEEEEecccc
Confidence 01456789999999754322111 112235788999998542 2 2222222 22344 45889999964
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00068 Score=59.70 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
+|+++|..||||||++..|+..|...|++|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999999998999986554
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.03 E-value=0.00046 Score=61.38 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+++|+|.+||||||+|..|+.. |.+|++++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 3789999999999999988744 7788888875
No 299
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.03 E-value=0.0014 Score=75.96 Aligned_cols=89 Identities=20% Similarity=0.352 Sum_probs=59.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l 90 (403)
+.+++.|+|.+|+||||++.+++...++.|.+|++++++-...... ....+++ ++.... ... +.+...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~------a~~lGvd~~~L~i~~~-~~~-e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQP-DTG-EQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH------HHHTTCCGGGCEEECC-SSH-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH------HHHcCCCHHHeEEcCC-CCH-HHHHHHH
Confidence 4688999999999999999999999999999999999985433221 2222332 111111 122 3233333
Q ss_pred HH-HHhCCCcEEEEeCCCCcc
Q 015657 91 EE-AKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 91 ~~-~~~~~~D~VIIDtpg~l~ 110 (403)
.. ++..++++||||....+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHhcCCCEEEECCHHHhh
Confidence 32 335689999999977664
No 300
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.03 E-value=0.0013 Score=57.16 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhh--cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNI--EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~--~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||...... +. . ......+.+++|+|........... ..+.. .-.+.-+|.||+|...
T Consensus 53 ~~~~~~i~Dt~G~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDN-VR---P--LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp CEEEEEEEEECCSGGGTT-TG---G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCChhhhh-hH---H--hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 357899999999643211 10 0 0112457889999997654433321 11211 1123458889999753
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00044 Score=66.11 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=35.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEE-eccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLV-AGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllV-d~D~~ 54 (403)
..++.+|+|+|.+||||||++..|+..|...| .++.++ ..|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45789999999999999999999999998654 444444 88865
No 302
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.01 E-value=0.00071 Score=65.64 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r 55 (403)
..+|.+|+|+|++||||||++..|+..+.. .+.+|.++..|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 456889999999999999999999988874 35689999999753
No 303
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00069 Score=60.28 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV 49 (403)
++.+|+++|.+||||||++..|+..|...| +|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 357899999999999999999999998777 66443
No 304
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00039 Score=62.09 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=28.2
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++++.-.++++|+++|++||||||++..|+..+ |.. +++.|
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 455555567889999999999999999999877 443 45666
No 305
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.01 E-value=0.00066 Score=60.35 Aligned_cols=38 Identities=37% Similarity=0.377 Sum_probs=34.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+..++++|++|+||||++..++..+...|.+|.++.+.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 36789999999999999999999999889999888764
No 306
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.01 E-value=0.0014 Score=65.35 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc----HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657 98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFN-IEIGITGAILTKLDGDS 168 (403)
Q Consensus 98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~----g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~ 168 (403)
+.+.|+||||... ....+ +..+..+|.+++|+|+.. .+.... +..+. ......-+++||+|...
T Consensus 81 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPGHET----LMATM--LSGASLMDGAILVIAANEPCPQPQTKEH-LMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSSHHH----HHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCCHHH----HHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHH-HHHHHHcCCCeEEEEEEccCCCC
Confidence 6799999999532 22211 222334689999999963 333322 22221 22333458999999653
No 307
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.00 E-value=0.00078 Score=59.05 Aligned_cols=34 Identities=41% Similarity=0.618 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
+|+++|.+||||||++..|+..|...|..|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999999988888876443
No 308
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.00 E-value=0.0015 Score=57.84 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH-------HHHhhhcCCeeEEEEccCCCCCc
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-------VTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~-------~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
.+.+.|+||||...... +. . ...-..+.+++|+|.......... +.......+ .-+|+||+|....
T Consensus 72 ~~~l~i~Dt~G~~~~~~-~~----~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 2gco_A 72 QVELALWDTAGQEDYDR-LR----P-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEEECCCCSGGGTT-TG----G-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC
T ss_pred EEEEEEEECCCchhHHH-HH----H-HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC
Confidence 46899999999643211 00 0 012245888999998654333222 112222333 3489999997543
No 309
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.99 E-value=0.00049 Score=59.78 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+.+|+++|++||||||++..|+..| +.....++.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 5689999999999999998888665 4455556666
No 310
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.00074 Score=65.52 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||....... . ... .-..+.+++|+|+... ..+......+.. .-.+.-+|+||+|...
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~-~---~~~--~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPL-W---RHY--FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp TTEEEEEEECC-----CCS-H---HHH--HTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CcEEEEEEECCCCHhHHHH-H---HHH--hccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 4678999999995432211 1 111 1134788999998432 222222222211 1223458899999754
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00089 Score=59.75 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
++.+|+++|.+||||||++..|+..|...+..+.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999999999999999988888885443
No 312
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.0034 Score=54.93 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=43.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-------hcCCeeEEEEccCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-------IEIGITGAILTKLD 165 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-------~~~~i~GvIlNk~D 165 (403)
..+.+.|+||||...... + ... ....+.+++|.|.......... ...+. ...+ .-+|.||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~----~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 138 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-C----ERY--LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLD 138 (187)
T ss_dssp EEEEEEEEECCC---CCC-T----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGG
T ss_pred EEEEEEEEECCCCCcchh-H----HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcc
Confidence 357889999999643321 1 111 1235888999998654333222 12221 1233 448999999
Q ss_pred CCC----chhHHHHHHHHhCCCe
Q 015657 166 GDS----RGGAALSVKEVSGKPI 184 (403)
Q Consensus 166 ~~~----~~~~~~~~~~~~g~pi 184 (403)
... ....+.......+.++
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~ 161 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFGCLF 161 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEE
T ss_pred hhhcCccCHHHHHHHHHHcCCcE
Confidence 642 1233455566667655
No 313
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.97 E-value=0.036 Score=53.47 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKK 41 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~ 41 (403)
.+..++++|++|+||||++..++..+..
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999999999988753
No 314
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.95 E-value=0.00061 Score=71.79 Aligned_cols=42 Identities=45% Similarity=0.709 Sum_probs=37.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
++.+|+++|.+||||||++..|+..|..+|+.+..+|.|..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 678999999999999999999999999899999888877443
No 315
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0012 Score=58.91 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||....... . . ......+.+++|+|........... ..+. ...+ .-+|.||+|..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~-~----~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRL-R----P-LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC-------C-GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHHH-H----H-hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence 3578999999997543211 0 0 0122458899999986654433322 1222 2333 34899999954
No 316
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.0046 Score=59.87 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI 85 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~ 85 (403)
...+..++++|++|+||||++..++..+... +..+..++|....... .-+..+....+...- .......+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~ 117 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY-RVASAIAEAVGVRVP--FTGLSVGEV 117 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-HHHHHHHHHHSCCCC--SSCCCHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-HHHHHHHHHhCCCCC--CCCCCHHHH
Confidence 3556789999999999999999999988764 5667777765443211 111111222222211 112223344
Q ss_pred HHHHHHHHHh-CCCcEEEEeCCCCcc
Q 015657 86 AKQGLEEAKK-KNVDVVIVDTAGRLQ 110 (403)
Q Consensus 86 ~~~~l~~~~~-~~~D~VIIDtpg~l~ 110 (403)
.......+.. ....++|||=...+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 4444444432 225589999877654
No 317
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.94 E-value=0.016 Score=49.63 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=19.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+.--|+++|.+||||||+...|.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34558899999999999997776
No 318
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.0092 Score=54.79 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
..++-++++|++|+||||++..+|..+ +.++..+++....... .......+...+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 93 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI--------------------GGLGAARVRSLFKE 93 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS--------------------TTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc--------------------cChhHHHHHHHHHH
Confidence 456778999999999999999998765 5566666665221100 00122334455555
Q ss_pred HHhCCCcEEEEeCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l 109 (403)
+......+++||-...+
T Consensus 94 a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 94 ARARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHHTCSEEEEEECC---
T ss_pred HHhcCCeEEEEeCcchh
Confidence 55456789999987655
No 319
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.93 E-value=0.0021 Score=62.65 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--------CCcEEEEecc
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--------GKSCMLVAGD 52 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--------G~kVllVd~D 52 (403)
...+..++++|++|+||||++..++..+... +..++.++|.
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 3456789999999999999999999988765 7788877765
No 320
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.92 E-value=0.00065 Score=58.71 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||...... +. . ...-.++.+++|+|........... ..+. ...+ .-+|+||+|...
T Consensus 51 ~~~~~~i~Dt~G~~~~~~-~~----~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDR-LR----P-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTT-TG----G-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHH-HH----H-HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence 356788999999743211 00 0 0112458889999986654333221 2222 2333 348899999643
No 321
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.92 E-value=0.00063 Score=60.66 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhhc--CCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNIE--IGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~~--~~i~GvIlNk~D~~~ 168 (403)
..+.+.|+||||.-...... . ...-.++.+++|+|+.......... ..+... -...-+|+||+|...
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLR----P--LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTG----G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred EEEEEEEEECCCchhhHHHH----H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 35677899999974321110 0 0122458899999997654443332 122211 123458899999643
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.92 E-value=0.00093 Score=59.79 Aligned_cols=39 Identities=38% Similarity=0.485 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.++.+++++|+.||||||++..|+..+.. ++.+++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 46789999999999999999999877643 5889998864
No 323
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00081 Score=58.19 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=27.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
|.+|+++|++||||||++..|+.. .....+++.|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 578999999999999999888862 23455677663
No 324
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.91 E-value=0.0013 Score=58.83 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhh--cCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNI--EIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~--~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||...... +. .. ..-.++.+++|+|........... ..+.. .-...-+|.||+|..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDN-VR---PL--SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTT-TG---GG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhH-HH---Hh--hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 357899999999643211 10 00 112458899999997654433321 12221 112345888999975
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.87 E-value=0.0011 Score=59.25 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=33.2
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.+.-.-.++.+|+++|.+||||||++..|+..+. .+.+++.|.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 4444556678999999999999999987773321 5788999854
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.87 E-value=0.00097 Score=58.47 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
++.+|+++|++||||||++..|+..| |.. +++.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D~ 38 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RLP--LLSKDA 38 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHHH
Confidence 57899999999999999999999877 443 466663
No 327
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.0079 Score=52.51 Aligned_cols=76 Identities=11% Similarity=-0.013 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh-----cCCeeEEEEccCCCC-
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI-----EIGITGAILTKLDGD- 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~-----~~~i~GvIlNk~D~~- 167 (403)
.+.+.|+||||..... . ....+.+++|+|......... ....+.. ... .-+|.||+|..
T Consensus 66 ~~~l~i~Dt~G~~~~~---------~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ---------F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISA 133 (184)
T ss_dssp EEEEEEEECSSSCCHH---------H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBT
T ss_pred EEEEEEEECCCChhhh---------e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 4678889999975421 1 112488999999966543333 2222221 222 34888999963
Q ss_pred --C---chhHHHHHHHHhC-CCe
Q 015657 168 --S---RGGAALSVKEVSG-KPI 184 (403)
Q Consensus 168 --~---~~~~~~~~~~~~g-~pi 184 (403)
. ....+..+....+ .++
T Consensus 134 ~~~~~v~~~~~~~~~~~~~~~~~ 156 (184)
T 3ihw_A 134 ANPRVIDDSRARKLSTDLKRCTY 156 (184)
T ss_dssp TBCCCSCHHHHHHHHHHTTTCEE
T ss_pred ccccccCHHHHHHHHHHcCCCeE
Confidence 1 1233444555554 444
No 328
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.86 E-value=0.0004 Score=72.03 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=35.8
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~ 167 (403)
+..+.|+||||.-.+..... .....+|.+++|+|+..+ ......+... ...++ .-+++||+|..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRA------RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBB------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHH------HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence 45789999999654321111 111235788999999543 2222222222 22333 44888999953
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.85 E-value=0.00078 Score=59.36 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+...++.+|+++|.+||||||++..|+..+ .| ..++|+|
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 4445566789999999999999998887652 14 4467776
No 330
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.85 E-value=0.0014 Score=58.97 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~ 167 (403)
..+.+.|+||||...... +. .. ....++.+++|+|........... ..+ .... ..-+|.||+|..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDN-VR---PL--CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTT-TG---GG--GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTS-EEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHH-HH---HH--HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEChhhc
Confidence 457899999999643211 00 00 112458899999996654433321 122 1222 344888999964
No 331
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.84 E-value=0.015 Score=54.92 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~ 51 (403)
.++..++++|++|+|||+++..+|..+...+. .+..+++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 34567899999999999999999999987654 5555553
No 332
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.81 E-value=0.0012 Score=58.49 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
..+++++|+.|+||||++..++..+..+|++|+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 4688999999999999999999999889999998753
No 333
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.81 E-value=0.003 Score=64.47 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=44.3
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNI----EIGITGAILTKLDGDS 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~~~----~~~i~GvIlNk~D~~~ 168 (403)
.++.+.|+||||........ ....-.++.+++|+|+..... .......+.. .-...-+|+||+|...
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLW------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGG------GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred CCEEEEEEECCCcHHHHHHH------HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 46889999999964432211 111224588999999865432 2222222211 1223458999999754
Q ss_pred chhHHHHHHHHhCCC
Q 015657 169 RGGAALSVKEVSGKP 183 (403)
Q Consensus 169 ~~~~~~~~~~~~g~p 183 (403)
... ...+.+..+.+
T Consensus 438 ~~~-~~~~~~~~~~~ 451 (497)
T 3lvq_E 438 AMK-PHEIQEKLGLT 451 (497)
T ss_dssp CCC-HHHHHHHTTCT
T ss_pred CCC-HHHHHHHhchh
Confidence 321 23344445443
No 334
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.80 E-value=0.003 Score=60.48 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHH---HHHHhh---hcCCeeEEEEccCCC
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAA---LVTTFN---IEIGITGAILTKLDG 166 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~---~~~~~~---~~~~i~GvIlNk~D~ 166 (403)
.++.+.|+||||...........+.. ...-.++.+++|+|+.... +... .+..+. .. .+.-+|+||+|.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~-~piilv~NK~Dl 127 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKD-HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD-AKIFVLLHKMDL 127 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHH-HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT-CEEEEEEECGGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHH-HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC-CeEEEEEecccc
Confidence 36789999999974321100000000 0112468899999985432 2211 122221 12 234588999997
Q ss_pred CC
Q 015657 167 DS 168 (403)
Q Consensus 167 ~~ 168 (403)
..
T Consensus 128 ~~ 129 (307)
T 3r7w_A 128 VQ 129 (307)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 335
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.0034 Score=55.41 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSC 46 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kV 46 (403)
.++++|++|+||||++..++..+...++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 69 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRD 69 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccccc
Confidence 389999999999999999999887655443
No 336
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.76 E-value=0.0011 Score=69.23 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=37.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDV 53 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G-~kVllVd~D~ 53 (403)
.+++.+|+++|.+||||||++..|+..|..+| +++.++|.|.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 34678999999999999999999999999888 8898999883
No 337
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.76 E-value=0.00084 Score=59.54 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
++.+|+++|.+||||||++..|+..| .|+++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 45789999999999999998888776 3677766553
No 338
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.76 E-value=0.00036 Score=62.42 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
+|+|+|.+||||||++..|+..|...|++|.++.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 68999999999999999999999988888877654
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00081 Score=58.83 Aligned_cols=33 Identities=42% Similarity=0.557 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+++|+++|++||||||++..||..| |.. ++|.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~~--~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KRI--LYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 5678999999999999999998776 433 56766
No 340
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.75 E-value=0.0041 Score=57.36 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe--ccCCChhhHHHHHHhhhccCCc--eEeCCCCCCHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVP--VYTAGTEVKPSQIAKQ 88 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd--~D~~rp~~~~~l~~~~~~~gv~--v~~~~~~~~~~~~~~~ 88 (403)
....+.+++|.-|+||||.+..++..+..+|++|+++. .|. |.+ ..+ ....|+. .+.... .. +
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg--~~i---~sr~G~~~~a~~i~~---~~----d 83 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS--SSF---CTHDRNTMEALPACL---LR----D 83 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEESS---GG----G
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch--HHH---HhhcCCeeEEEecCC---HH----H
Confidence 34688999999999999999999999999999999987 332 211 111 1112322 222111 11 1
Q ss_pred HHHHHHhCCCcEEEEeCCCCcc
Q 015657 89 GLEEAKKKNVDVVIVDTAGRLQ 110 (403)
Q Consensus 89 ~l~~~~~~~~D~VIIDtpg~l~ 110 (403)
.++.+ ..||+|+||=+-.+.
T Consensus 84 i~~~~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 84 VAQEA--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp GHHHH--TTCSEEEESSGGGCT
T ss_pred HHHHh--ccCCEEEEEchhhhh
Confidence 23333 579999999877653
No 341
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.016 Score=55.98 Aligned_cols=104 Identities=6% Similarity=0.022 Sum_probs=60.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-------CCcEEEEeccCCChh--hHHHHHHhhhccCCceEeCCCCCCH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-------GKSCMLVAGDVYRPA--AIDQLVILGEQVGVPVYTAGTEVKP 82 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-------G~kVllVd~D~~rp~--~~~~l~~~~~~~gv~v~~~~~~~~~ 82 (403)
..+|..+.++|++|+|||+++..++..|... ...++.|.|-..... .+..+. ....+.... ....
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~--~~L~g~~~~----~~~~ 115 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW--FAISKENLC----GDIS 115 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHH--HHHSCCC------CCCC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHH--HHhcCCCCC----chHH
Confidence 4567788999999999999999999999753 245666666544322 222221 111222111 1123
Q ss_pred HHHHHHHHHHH--HhCCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657 83 SQIAKQGLEEA--KKKNVDVVIVDTAGRLQIDKAMMDELKDV 122 (403)
Q Consensus 83 ~~~~~~~l~~~--~~~~~D~VIIDtpg~l~~d~~l~~el~~i 122 (403)
.+.+...+..+ .....-+|++|=.-.+. +..++..+-.+
T Consensus 116 ~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~ 156 (318)
T 3te6_A 116 LEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKW 156 (318)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhc
Confidence 44455555543 12345689999877766 44555555444
No 342
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.72 E-value=0.0019 Score=58.85 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
+..+|++.|..||||||.+..|+.+|..+|++|.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4688999999999999999999999999999996543
No 343
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.72 E-value=0.0049 Score=61.44 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015657 18 ILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA 36 (403)
|+++|.++|||||+...|.
T Consensus 3 I~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998776
No 344
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.71 E-value=0.0016 Score=60.17 Aligned_cols=48 Identities=27% Similarity=0.486 Sum_probs=33.4
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCcEEEEeccCC
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVY 54 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-----G~kVllVd~D~~ 54 (403)
+++|+-.++.+|+++|+.||||||++..|+..+..- ..++.+++.|.+
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 456666678999999999999999999998877321 245778887743
No 345
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.71 E-value=0.0018 Score=56.03 Aligned_cols=38 Identities=26% Similarity=0.528 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r 55 (403)
.++.+|+++|++||||||++..|+..+ | ..+++.|...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 346889999999999999999988766 4 3467888554
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.00098 Score=58.63 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.+++|+|.+||||||++..|+..+...|+++..|..|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 578999999999999999999999998988877776643
No 347
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.026 Score=56.22 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=46.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-+++.|+||+|||++|.++|..+ |.....|++...- ..+. .....+++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~---------------------sk~vGese~~vr~lF~ 235 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV---------------------QKYIGEGSRMVRELFV 235 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS---------------------CSSTTHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh---------------------ccccchHHHHHHHHHH
Confidence 467889999999999999999998765 4556555543100 0111 13345677777
Q ss_pred HHHhCCCcEEEEeC
Q 015657 92 EAKKKNVDVVIVDT 105 (403)
Q Consensus 92 ~~~~~~~D~VIIDt 105 (403)
.++....-+|+||=
T Consensus 236 ~Ar~~aP~IIFiDE 249 (405)
T 4b4t_J 236 MAREHAPSIIFMDE 249 (405)
T ss_dssp HHHHTCSEEEEEES
T ss_pred HHHHhCCceEeeec
Confidence 77766778888884
No 348
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.68 E-value=0.0014 Score=68.09 Aligned_cols=41 Identities=34% Similarity=0.582 Sum_probs=37.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+.+.+|+++|.+||||||++..|+..|..+|+++.++|.|.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 34688999999999999999999999999999999999883
No 349
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.67 E-value=0.0019 Score=61.96 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~ 54 (403)
.++.+++|+|++||||||++..|+..+. -.+-.|.++++|-+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999998876 34457888888854
No 350
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.66 E-value=0.002 Score=55.48 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~ 51 (403)
..+..++++|++|+||||++..++..+.. .+.++..+++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 34566899999999999999999999876 4666766664
No 351
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.64 E-value=0.0093 Score=54.18 Aligned_cols=34 Identities=41% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
-...|.++|.-||||||++..| ++.|.. ++|+|.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l----~~~g~~--vidaD~ 41 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLF----AARGAS--LVDTDL 41 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHH----HHTTCE--EEEHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHH----HHCCCc--EEECcH
Confidence 3567999999999999999554 455654 578884
No 352
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=57.33 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 46889999999999999999988766 43 356665
No 353
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=96.63 E-value=0.0027 Score=64.27 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=38.6
Q ss_pred CCCEEEEEEcC-C---CCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH
Q 015657 13 SRPTVILLAGL-Q---GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60 (403)
Q Consensus 13 ~~~~iI~v~G~-g---GsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~ 60 (403)
.+.++|+|++. + |.||||++.+||..|++.|+||+++ ..+|....
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~ 103 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGP 103 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHH
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccc
Confidence 45688999877 8 9999999999999999999999988 66666543
No 354
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.62 E-value=0.003 Score=57.95 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=37.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 55 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~r 55 (403)
..++.+|++.|..||||||++..|+.+|.. .|++|.++...|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 456789999999999999999999999999 99999774555544
No 355
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.62 E-value=0.0049 Score=63.00 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..|+++|.+|+||||+...|... +..++. | + |.. ........+. .
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~------~~a~vs-~-~-~gT-------T~d~~~~~i~-------------------~ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE------DRAIVT-D-I-PGT-------TRDVISEEIV-------------------I 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH------TBCCCC-C-S-SCC-------SSCSCCEEEE-------------------E
T ss_pred CEEEEECcCCCcHHHHHHHHHCC------CCCccC-C-C-CCe-------eeeeEEEEEe-------------------c
Confidence 45889999999999999888732 111111 1 0 110 0000011111 1
Q ss_pred CCCcEEEEeCCCCc-cccHH-----hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657 96 KNVDVVIVDTAGRL-QIDKA-----MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 167 (403)
Q Consensus 96 ~~~D~VIIDtpg~l-~~d~~-----l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~ 167 (403)
.++.++|+||||.. ..... ....+. ..-.++.+++|+|+... .+.......+ ... ..-+|+||+|..
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~---~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~-piivV~NK~DL~ 363 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQ---EIEKADIVLFVLDASSPLDEEDRKILERI-KNK-RYLVVINKVDVV 363 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH---HHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTS-SEEEEEEECSSC
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHH---HhhcccEEEEEecCCCCCCHHHHHHHHHh-cCC-CEEEEEECcccc
Confidence 45789999999975 32110 011111 12235889999998432 2222222222 222 345899999975
Q ss_pred C
Q 015657 168 S 168 (403)
Q Consensus 168 ~ 168 (403)
.
T Consensus 364 ~ 364 (482)
T 1xzp_A 364 E 364 (482)
T ss_dssp C
T ss_pred c
Confidence 3
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.59 E-value=0.0016 Score=59.52 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
.+++||++.|+|||||||.|..|+..|
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998776
No 357
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0048 Score=57.66 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=45.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
..++.++++|++|+||||++..+|..+ +.++..+.+...... ........+...+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~~~~ 105 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK--------------------FIGEGASLVKDIFKL 105 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC--------------------STTHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh--------------------ccchHHHHHHHHHHH
Confidence 356678999999999999998888664 556665554311100 001122344555566
Q ss_pred HHhCCCcEEEEeCCCC
Q 015657 93 AKKKNVDVVIVDTAGR 108 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~ 108 (403)
+......+++||=...
T Consensus 106 ~~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 106 AKEKAPSIIFIDEIDA 121 (285)
T ss_dssp HHHTCSEEEEEETTHH
T ss_pred HHHcCCeEEEEECHHH
Confidence 6556678999996543
No 358
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0013 Score=56.42 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
.+|+++|++||||||++..|+..+ |+. +++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~--~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KYP--IIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CCC--EEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCe--eecCccc
Confidence 478999999999999998888766 433 5777744
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.57 E-value=0.0012 Score=58.07 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+++|.+||||||++..|+..| | ..+++.|
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 35789999999999999999998876 3 3466765
No 360
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.58 E-value=0.00036 Score=61.97 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+..-|+++|.+||||||+...|.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 44557889999999999997665
No 361
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.56 E-value=0.0069 Score=60.72 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+++.-+....++++|.+||||||+...|+
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHC
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 33333344568999999999999998776
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.55 E-value=0.0013 Score=58.20 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=27.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
.++.+|+|+|.+||||||++..|+.. |. .++|+|.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 46789999999999999999777753 54 4668774
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.52 E-value=0.0016 Score=57.29 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+++|.+||||||++..|+..| |.. +++.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l---~~~--~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY---GYT--HLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence 56789999999999999999998776 433 56665
No 364
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.006 Score=58.80 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+++-++++|++|+|||+++..+|..+ .+..+..+++..... .. .......++..+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~----------~~----------~g~~~~~~~~lf~~ 100 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVS----------KW----------LGESEKLVKNLFQL 100 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCC----------SS----------CCSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHh----------hh----------hhHHHHHHHHHHHH
Confidence 356889999999999999999998776 245555555431100 00 00123445566666
Q ss_pred HHhCCCcEEEEeCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l 109 (403)
+......+|+||=...+
T Consensus 101 a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 101 ARENKPSIIFIDEIDSL 117 (322)
T ss_dssp HHHTSSEEEEEETTTGG
T ss_pred HHhcCCcEEEeecHHHh
Confidence 65567789999965544
No 365
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.52 E-value=0.0022 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.1
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015657 9 VFAKSRPTVILLAGLQGVGKTTVSAKL 35 (403)
Q Consensus 9 ~~~~~~~~iI~v~G~gGsGKTTla~~L 35 (403)
+|+-.++.+++++|++||||||++..+
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 344456789999999999999999763
No 366
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.48 E-value=0.023 Score=55.71 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccC-CceEeCCC-CCCHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVG-VPVYTAGT-EVKPSQIAKQGL 90 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~g-v~v~~~~~-~~~~~~~~~~~l 90 (403)
+..+++|+|++||||||+...|+..+... +.+++.+. |+..... ..... +.-...+. ... +.+++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~-------~~~~~~v~q~~~~~~~~~----~~~~L 189 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH-------ESKKCLVNQREVHRDTLG----FSEAL 189 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC-------CCSSSEEEEEEBTTTBSC----HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh-------hccccceeeeeeccccCC----HHHHH
Confidence 44589999999999999999999988764 66664443 4321110 00000 11111111 111 23355
Q ss_pred HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH
Q 015657 91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 140 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g 140 (403)
..+...+.|++|+|=|.. ......+..... .-..+++++.....
T Consensus 190 a~aL~~~PdvillDEp~d----~e~~~~~~~~~~--~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 190 RSALREDPDIILVGEMRD----LETIRLALTAAE--TGHLVFGTLHTTSA 233 (356)
T ss_dssp HHHTTSCCSEEEESCCCS----HHHHHHHHHHHH--TTCEEEEEESCSSH
T ss_pred HHHhhhCcCEEecCCCCC----HHHHHHHHHHHh--cCCEEEEEEccChH
Confidence 555568999999999873 333332222222 12456666665443
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.47 E-value=0.002 Score=57.25 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=28.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+..|.+|+++|.+||||||++..|+..+ |.. +++.|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3456789999999999999999998877 444 45654
No 368
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.47 E-value=0.0021 Score=56.31 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+++++|++||||||++..|+.. .+.....++.|
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 4688999999999999999888754 23344567766
No 369
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.46 E-value=0.051 Score=49.19 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCC-
Q 015657 96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDS- 168 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~- 168 (403)
..+.+-|.||+|.-.... +.. .. ....+.+++|.|.........+.. .....--+.-+|-||.|...
T Consensus 60 ~~v~l~iwDtaGqe~~~~-l~~---~~--~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRS-LIP---SY--IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp CEEEEEEECCSCTTTCGG-GHH---HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred eEEEEEEEECCCchhhhh-HHH---HH--hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 357788999999643311 111 11 123578888888865544433221 11111123447889999643
Q ss_pred ---chhHHHHHHHHhCCCe
Q 015657 169 ---RGGAALSVKEVSGKPI 184 (403)
Q Consensus 169 ---~~~~~~~~~~~~g~pi 184 (403)
....+.......+.+.
T Consensus 134 r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 134 RQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred CcccHHHHhhHHHHhCCee
Confidence 2244555666777654
No 370
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.46 E-value=0.0011 Score=58.06 Aligned_cols=32 Identities=41% Similarity=0.649 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+|+++|.+||||||++..|+..| |.. ++|.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCc
Confidence 358999999999999998888766 433 66777
No 371
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.46 E-value=0.0013 Score=56.75 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=26.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+.+|+++|++||||||++..|+..+ | ..++|+|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 3579999999999999998888655 3 3467776
No 372
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.46 E-value=0.003 Score=60.68 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D 52 (403)
...++++|++|+|||+++..++..+. .+|++|.++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 46789999999999999999999999 999999888764
No 373
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.006 Score=61.52 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D 52 (403)
+..++++|++|+||||++..++..+... +.++..+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 5678999999999999999999998765 7888888876
No 374
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.44 E-value=0.044 Score=55.51 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+.+|+++|.+||||||++..|+..+...+..+..+..|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 4567899999999999999999999998777777766655
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.43 E-value=0.0017 Score=55.87 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
-..+|+++|.+||||||++..||..| |.+ ++|+|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 35789999999999999998888766 444 46766
No 376
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0019 Score=55.06 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 47 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl 47 (403)
.+|+++|++||||||++..| .+.|+.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47899999999999999877 45577654
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.42 E-value=0.0049 Score=53.67 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA 36 (403)
-|+++|.+||||||+...|+
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999998776
No 378
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.42 E-value=0.0025 Score=54.90 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~ 51 (403)
..+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 34566799999999999999999999876 3566665554
No 379
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.41 E-value=0.0086 Score=56.35 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+++.++++|++|+||||++..++..+ +.....+++...... .........+..+..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--------------------YVGDGEKLVRALFAVA 109 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS--------------------SCSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc--------------------ccchHHHHHHHHHHHH
Confidence 46789999999999999999888765 445555554311000 0011334455555555
Q ss_pred HhCCCcEEEEeCCCCc
Q 015657 94 KKKNVDVVIVDTAGRL 109 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l 109 (403)
......+++||=...+
T Consensus 110 ~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSL 125 (297)
T ss_dssp HHTCSEEEEEETGGGT
T ss_pred HHcCCcEEEeccHHHh
Confidence 5567789999976544
No 380
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.40 E-value=0.0021 Score=58.05 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=27.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+++..|+++|.+||||||++..|+..| |. .+++.|
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 356789999999999999999998876 33 356654
No 381
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.38 E-value=0.017 Score=50.98 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.9
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA 36 (403)
+.-.+...++++|.+||||||+...|+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 334456789999999999999997776
No 382
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0026 Score=59.19 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
++|+|+|++||||||++..||..+ | ..+++.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 578999999999999999998766 3 336777753
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.38 E-value=0.0029 Score=58.46 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
..+|.+|+++|++||||||++..|+..+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999998766
No 384
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.37 E-value=0.0022 Score=55.86 Aligned_cols=34 Identities=38% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+++|++||||||++..|+..+ |. .+++.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 45678999999999999999998776 33 345655
No 385
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0018 Score=55.79 Aligned_cols=32 Identities=41% Similarity=0.571 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++|+++|.+||||||++..|+..| |. .+++.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 468999999999999999888776 43 366776
No 386
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=96.37 E-value=0.23 Score=46.45 Aligned_cols=169 Identities=12% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCCEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHHHhhhc-------------------
Q 015657 13 SRPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGEQ------------------- 68 (403)
Q Consensus 13 ~~~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~~~~~~------------------- 68 (403)
...+.|+++|- +|-||=.+|+.|++.|+.+|++|.++..|||- |+...+.. +++-
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTMsP~q-HGEVfVtdDG~EtDLDLGhYERF 99 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYE-HGEVFVLDDGGEVDLDLGNYERF 99 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--------------------------------
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCCChhh-hceEEeecccccccccccchHhh
Confidence 35688999876 99999999999999999999999999999973 33322210 1110
Q ss_pred cCCce-----EeC-----------------CCCCC--H--HHHHHHHHHHHH-------hCCCcEEEEeCCCCccc--cH
Q 015657 69 VGVPV-----YTA-----------------GTEVK--P--SQIAKQGLEEAK-------KKNVDVVIVDTAGRLQI--DK 113 (403)
Q Consensus 69 ~gv~v-----~~~-----------------~~~~~--~--~~~~~~~l~~~~-------~~~~D~VIIDtpg~l~~--d~ 113 (403)
.++.. ++. +.... | .+.+++.+..+. ..++|++|++-.|.... ..
T Consensus 100 l~~~l~~~~niTtGkiY~~Vi~kERrGdYLG~TVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Dv~IvEiGGTVGDIEs~ 179 (295)
T 2vo1_A 100 LDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESM 179 (295)
T ss_dssp --------CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGH
T ss_pred ccCCcCccccccHHHHHHHHHHHHHcCCCCCCeEEecCChhhHHHHHHHHhhcccccccCCCCCEEEEEcCceecccccc
Confidence 00000 000 00000 0 111233333321 24689999998887764 34
Q ss_pred HhHHHHHHHhhhcCCceEEEEEe-------c------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHh
Q 015657 114 AMMDELKDVKRVLNPTEVLLVVD-------A------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180 (403)
Q Consensus 114 ~l~~el~~i~~~~~~~~vllVvd-------a------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~ 180 (403)
..++.+.++...+....++++-- + ...|..+..++.+. +.+. +|+-+.+..-....-..+...+
T Consensus 180 PFlEAiRQ~~~~~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~G--IqPD-iivcRse~pl~~~~k~KIAlFC 256 (295)
T 2vo1_A 180 PFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLG--LSPD-LVVCRCSNPLDTSVKEKISMFC 256 (295)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHT--CCCS-EEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccceeEEEeeccccccccccccccchHhHHHHHHhcC--CCCC-eeeecCCCCCCHHHHHHHHHcc
Confidence 56777777777666555544321 1 11255665555443 2223 6677777655555556666677
Q ss_pred CCCeE
Q 015657 181 GKPIK 185 (403)
Q Consensus 181 g~pi~ 185 (403)
++|..
T Consensus 257 nV~~~ 261 (295)
T 2vo1_A 257 HVEPE 261 (295)
T ss_dssp TSCGG
T ss_pred CCCHH
Confidence 77653
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.37 E-value=0.0011 Score=57.62 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 47 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl 47 (403)
++.+|+++|.+||||||++..|+..| |..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 56789999999999999998887654 55543
No 388
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.36 E-value=0.0027 Score=60.42 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
..|+.++++|++|+|||+++..+|..+ |.++..+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 467889999999999999999999888 677777765
No 389
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.35 E-value=0.026 Score=56.93 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEe
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVA 50 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd 50 (403)
.++|.|.+|+||||++..++.+|...|. +|+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 7899999999999999999999999887 676665
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.35 E-value=0.0024 Score=55.76 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+++|.+||||||++..|+..+ |. .+++.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 35689999999999999999998766 43 356665
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.34 E-value=0.0049 Score=59.38 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=36.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVY 54 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~ 54 (403)
..++.+++|+|++||||||++..|+..+... | .+|.+|..|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4567899999999999999999999988753 5 57888888864
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.33 E-value=0.019 Score=56.56 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=49.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGL 90 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~~~~~l 90 (403)
.+..+++++|++||||||+...|+..+... ..+|.+++-+ ... .+. ..+.+++.. ....+ ..+..++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~-------~~~--~~~~~v~Q~~~g~~~-~~~~~~l 202 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEY-------VFK--HKKSIVNQREVGEDT-KSFADAL 202 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCS-------CCC--CSSSEEEEEEBTTTB-SCSHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhh-------hhc--cCceEEEeeecCCCH-HHHHHHH
Confidence 456789999999999999999999998764 4567665533 210 011 111111110 00000 0113344
Q ss_pred HHHHhCCCcEEEEeCCC
Q 015657 91 EEAKKKNVDVVIVDTAG 107 (403)
Q Consensus 91 ~~~~~~~~D~VIIDtpg 107 (403)
..+...+.|++|+|=|.
T Consensus 203 ~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMR 219 (372)
T ss_dssp HHHTTSCCSEEEESCCC
T ss_pred HHHhhhCcCEEEECCCC
Confidence 44444689999999987
No 393
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.33 E-value=0.015 Score=51.60 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG 43 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G 43 (403)
.+..++++|++|+||||++..++..+....
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 356889999999999999999998887543
No 394
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.33 E-value=0.024 Score=55.50 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=33.4
Q ss_pred CCCEEEEE--EcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657 13 SRPTVILL--AGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v--~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~ 53 (403)
..+..++| +|++|+||||++..++..+... +..++.++|..
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 35678888 9999999999999999888753 56777888753
No 395
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=96.32 E-value=0.035 Score=51.51 Aligned_cols=165 Identities=10% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHH-------------------------
Q 015657 14 RPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLV------------------------- 63 (403)
Q Consensus 14 ~~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~------------------------- 63 (403)
..+.|+++|- +|.||-.+|+.|+..|+.+|++|..+..|||- |+...+..
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl~ 101 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLD 101 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC--------------------------------
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCCCCccccceEEEecCCccccccccchhhhcC
Confidence 4688999866 99999999999999999999999999999873 33211110
Q ss_pred ----------------------HhhhccCCceEeCCCCCCHHHHHHHHHHHHHh-------CCCcEEEEeCCCCccc--c
Q 015657 64 ----------------------ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-------KNVDVVIVDTAGRLQI--D 112 (403)
Q Consensus 64 ----------------------~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~-------~~~D~VIIDtpg~l~~--d 112 (403)
+.++..|-.+... ..-.+.+++.+..+.. .++|++|++-.|.... .
T Consensus 102 ~~lt~~nNiTtGkIY~~VI~KERrGdYLGkTVQVI---PHiTdeIk~~I~~~a~~pvd~~~~~~Dv~IiEiGGTVGDIES 178 (294)
T 2c5m_A 102 IRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVV---PHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIES 178 (294)
T ss_dssp ---CCTTEEEHHHHHHHHHHHHHTSCSCSSCCCTT---THHHHHHHHHHHHHTTCC------CCSEEEEEECSCTTCSTT
T ss_pred CCCcccccccHHHHHHHHHHHHhcCCcCCceeEEc---CCchHHHHHHHHHHhcCCccccCCCCCEEEEEeCCcchhhcc
Confidence 0000001000000 0112234555555432 5799999998777654 3
Q ss_pred HHhHHHHHHHhhhcCCceEEEEE----ec--c-------cHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHH
Q 015657 113 KAMMDELKDVKRVLNPTEVLLVV----DA--M-------TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179 (403)
Q Consensus 113 ~~l~~el~~i~~~~~~~~vllVv----da--~-------~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~ 179 (403)
...++.+.++...+....++++- .. . ..|..+..++.+. +.+. +|+-+.+..-.......+...
T Consensus 179 ~PFlEAiRQ~~~~~g~~n~~~iHvtlVP~i~~~gE~KTKPTQhSVk~Lr~~G--i~PD-iivcRse~~l~~~~k~KIalf 255 (294)
T 2c5m_A 179 MPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLG--LSPD-LVVCRCSNPLDTSVKEKISMF 255 (294)
T ss_dssp HHHHHHHHTTTTTSCTTTEEEEEEEECCCCTTTCSCCCHHHHHHHHHHHHTT--CCCS-EEEEECSSCCCTTHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCCcHHHHHHHHHcC--CCCC-EEEEecCCCCCHHHHHHHHHh
Confidence 45677777777776655554442 11 1 1255555555432 2222 667777766555555666666
Q ss_pred hCCCe
Q 015657 180 SGKPI 184 (403)
Q Consensus 180 ~g~pi 184 (403)
+++|.
T Consensus 256 c~V~~ 260 (294)
T 2c5m_A 256 CHVEP 260 (294)
T ss_dssp TTCCC
T ss_pred cCCCH
Confidence 66665
No 396
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.32 E-value=0.0031 Score=61.93 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
-.|+++|.+|+||||+...|.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHh
Confidence 347899999999999997764
No 397
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.31 E-value=0.0026 Score=65.41 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-C-CCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~-G~kVllVd~D~ 53 (403)
+++.+|+++|.+||||||++..||..|.. . |+.+.++|.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35688999999999999999999999986 5 47788999996
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.30 E-value=0.0032 Score=61.48 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+.+|+|+|++||||||++..||..+. +.+|++|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36899999999999999999987663 678999965
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.014 Score=53.73 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.++-++++|++|+||||++..++..+ +..+..+++.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~ 79 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS 79 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence 35568999999999999999998766 4455555543
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.0021 Score=55.81 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++|+++|++||||||++..||..| | ..++|.|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 368999999999999999998776 3 3467776
No 401
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.25 E-value=0.0052 Score=58.06 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=36.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
+...++++|++|+||||++..|+..+...+..+..++|.....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 3468999999999999999999999987777888888876543
No 402
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.012 Score=59.23 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=47.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-|+++|+||+|||++|.++|..+ |.....+++.-.- +.+. .....++..+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~---------------------sk~~Gese~~ir~~F~ 268 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV---------------------DKYIGESARIIREMFA 268 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC---------------------CSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc---------------------cccchHHHHHHHHHHH
Confidence 467889999999999999999998766 5566666543111 0111 12345666677
Q ss_pred HHHhCCCcEEEEeCC
Q 015657 92 EAKKKNVDVVIVDTA 106 (403)
Q Consensus 92 ~~~~~~~D~VIIDtp 106 (403)
.++....-+|+||-.
T Consensus 269 ~A~~~~P~IifiDEi 283 (437)
T 4b4t_L 269 YAKEHEPCIIFMDEV 283 (437)
T ss_dssp HHHHSCSEEEEEECC
T ss_pred HHHhcCCceeeeecc
Confidence 776667788888853
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.21 E-value=0.0025 Score=54.61 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|+++|.+||||||++..|+..| |.. ++++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence 58999999999999998888766 443 56766
No 404
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0029 Score=56.37 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+.+|+++|+.||||||++..|+. .|.. ++|+|.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 36899999999999999977764 3544 567773
No 405
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.19 E-value=0.0089 Score=54.32 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYR 55 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D~~r 55 (403)
..+|++.|..||||||.+..|+.+|...|+ .|. +.-.|..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~~ 43 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPGG 43 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCCC
Confidence 468999999999999999999999999998 664 4344443
No 406
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.18 E-value=0.0055 Score=54.88 Aligned_cols=39 Identities=36% Similarity=0.546 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 56 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp 56 (403)
.|++-|.-||||||.+..|+.+|.++|++|.+.. .|...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t 40 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGT 40 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCC
Confidence 4778899999999999999999999999996553 34443
No 407
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.18 E-value=0.0039 Score=55.76 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
-..+|.++|..||||||++..|+..+ | +.++|+|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 45889999999999999997777654 5 456788843
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.18 E-value=0.0055 Score=51.68 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.-++++|++|+|||++|..++......+..+. ++|.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 44789999999999999988877666677776 7765
No 409
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.085 Score=53.41 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=47.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-|++.|++|+|||++|.++|..+ |.....+++.... ..+. .....++..+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~---------------------sk~vGesek~ir~lF~ 296 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELV---------------------QKYVGEGARMVRELFE 296 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC---------------------CCSSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhh---------------------cccCCHHHHHHHHHHH
Confidence 468889999999999999999998766 4555555543100 0111 13345677777
Q ss_pred HHHhCCCcEEEEeCC
Q 015657 92 EAKKKNVDVVIVDTA 106 (403)
Q Consensus 92 ~~~~~~~D~VIIDtp 106 (403)
.++....-+|+||--
T Consensus 297 ~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 297 MARTKKACIIFFDEI 311 (467)
T ss_dssp HHHHTCSEEEEEECC
T ss_pred HHHhcCCceEeeccc
Confidence 776667788998853
No 410
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.17 E-value=0.008 Score=57.72 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=48.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
.+++-++++|++|+|||+++..+|..+ +..+..+++. .+. .... ......++..+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~--------~l~--~~~~----------g~~~~~~~~~f~~ 105 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DLV--SKWM----------GESEKLVKQLFAM 105 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHH--------HHH--TTTG----------GGHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchH--------HHh--hccc----------chHHHHHHHHHHH
Confidence 346779999999999999999998765 5566666542 110 0000 1123445566666
Q ss_pred HHhCCCcEEEEeCCCCc
Q 015657 93 AKKKNVDVVIVDTAGRL 109 (403)
Q Consensus 93 ~~~~~~D~VIIDtpg~l 109 (403)
+......+++||=...+
T Consensus 106 a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 106 ARENKPSIIFIDQVDAL 122 (322)
T ss_dssp HHHTSSEEEEEECGGGG
T ss_pred HHhcCCeEEEechhhhh
Confidence 66567789999975544
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.16 E-value=0.0026 Score=57.46 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+|.|++||||||++..|+..|. . ..++.|
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~--~~i~~d 37 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---L--AHISAG 37 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence 467799999999999999999988763 2 355654
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.16 E-value=0.0036 Score=57.62 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----CCcEEEE
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLV 49 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G~kVllV 49 (403)
+..+|+|.|+.||||||.+..|+.+|... |++|.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 45789999999999999999999999988 9998644
No 413
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.14 E-value=0.011 Score=57.68 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=45.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
..++.++++|++|+||||++..+|..+ +..+..+++...... ........++..+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--------------------~~g~~~~~~~~~~~~ 171 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--------------------WVGEGEKMVRALFAV 171 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS--------------------STTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc--------------------ccchHHHHHHHHHHH
Confidence 456789999999999999999888654 666766665311000 000122334445555
Q ss_pred HHhCCCcEEEEeCC
Q 015657 93 AKKKNVDVVIVDTA 106 (403)
Q Consensus 93 ~~~~~~D~VIIDtp 106 (403)
+......+++||=.
T Consensus 172 a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 172 ARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHTCSEEEEEETH
T ss_pred HHhcCCeEEEEeCc
Confidence 55556789999954
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.13 E-value=0.0042 Score=58.77 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=28.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
+.+|.+|+|+|.+||||||++..|+. .|. .+|++|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg~--~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN----LGA--YIIDSDH 107 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH----HTC--EEEEHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----CCC--cEEehhH
Confidence 35678999999999999999988873 365 4578774
No 415
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.10 E-value=0.17 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred CccHHHHHHhhcCCCHHHHHHHHHHH
Q 015657 309 SPVRRKRVAQDSGKTEQQVSQLVAQL 334 (403)
Q Consensus 309 ~~~r~~ria~gsg~~~~~v~~l~~~~ 334 (403)
...-.++||+-.|++++|+..+++..
T Consensus 323 d~~sl~~~a~~~~~~~~~~~~~~~s~ 348 (413)
T 1tq4_A 323 DETSLQRLARDWEIEVDQVEAMIKSP 348 (413)
T ss_dssp SHHHHHHHHSSSSSCHHHHHHTCSHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhCh
Confidence 34457899999999999999998887
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.09 E-value=0.0061 Score=59.39 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
++++|+|+|++||||||++..||..| ..-+|++|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 45789999999999999998888543 4668999954
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.09 E-value=0.0024 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
++++|+++|++||||||++..|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998766
No 418
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.07 E-value=0.0085 Score=55.81 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
...+..++++|++|+||||+|..++..+ +..+..++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3456789999999999999999998764 55655554
No 419
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.07 E-value=0.043 Score=52.89 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK 41 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~ 41 (403)
+..+..++++|++|+||||++..+|..+..
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 344677999999999999999999988864
No 420
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.06 E-value=0.014 Score=61.69 Aligned_cols=43 Identities=30% Similarity=0.401 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l 62 (403)
+.+|.|+||+|||++.+.+...+.++|.+|+++.. ...+++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i 249 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNL 249 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHH
Confidence 67888999999999999999999999999987763 23444544
No 421
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.017 Score=58.13 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=46.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-+++.|+||+|||++|.++|..+ |..+..+++.-.. ..+. .....+++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~---------------------~~~~Ge~e~~ir~lF~ 259 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV---------------------HKYLGEGPRMVRDVFR 259 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC---------------------CSSCSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh---------------------ccccchhHHHHHHHHH
Confidence 467889999999999999999999776 5566655543110 0111 12345666777
Q ss_pred HHHhCCCcEEEEeC
Q 015657 92 EAKKKNVDVVIVDT 105 (403)
Q Consensus 92 ~~~~~~~D~VIIDt 105 (403)
.++....-+++||-
T Consensus 260 ~A~~~aP~IifiDE 273 (428)
T 4b4t_K 260 LARENAPSIIFIDE 273 (428)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHHHcCCCeeechh
Confidence 77666677888885
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.05 E-value=0.0033 Score=55.84 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
.+|+++|.+||||||++..|+. + | +.++++|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 4689999999999999988876 3 4 45667663
No 423
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.022 Score=54.73 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.+. ++++|++|+||||++..|+..+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 345 89999999999999999998664
No 424
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.04 E-value=0.0041 Score=55.95 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+|+|..||||||++..|+. .|. .++|+|
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D 35 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD 35 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence 467899999999999999988764 354 467776
No 425
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.01 E-value=0.0052 Score=59.32 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
++++|+|+|++||||||++..||..+ ...+|++|.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 35789999999999999998888654 456889984
No 426
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.02 Score=53.94 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQ 42 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~ 42 (403)
+. ++++|++|+||||++..++..+...
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 44 8999999999999999999888643
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.00 E-value=0.008 Score=57.89 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
..|++|+|+|++||||||++..||..+ ...+|.+|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 357899999999999999999998664 356888884
No 428
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.99 E-value=0.0031 Score=57.22 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
++.+|+++|++||||||++..|+..+ |. .+++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 46789999999999999998888655 43 355654
No 429
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.99 E-value=0.0032 Score=56.62 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
.++.+|+++|++||||||++..|+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999998887654
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.98 E-value=0.0049 Score=59.70 Aligned_cols=35 Identities=37% Similarity=0.599 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~ 54 (403)
+++|+|+|++||||||++..||..+ ...+|++|..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 5789999999999999999988654 3668888843
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.96 E-value=0.0047 Score=55.72 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+..|++.|.+||||||++..|+..| |.. +++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 4568999999999999999999877 443 45554
No 432
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.95 E-value=0.0046 Score=65.06 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCCccc-----cHHhHHHHHHHhhh-c-CCce-EEEEEecc---cHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657 97 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRV-L-NPTE-VLLVVDAM---TGQEAAALVTTFNIEIGITGAILTKLD 165 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~-~-~~~~-vllVvda~---~g~~~~~~~~~~~~~~~i~GvIlNk~D 165 (403)
..+++|+|.||.... |......+..+... + .+.. +++++++. ..+.+...+..+......+-+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 368999999975432 33333333443333 2 2333 45555542 235667777777666556668999998
Q ss_pred CCCc
Q 015657 166 GDSR 169 (403)
Q Consensus 166 ~~~~ 169 (403)
.-..
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 5543
No 433
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.015 Score=58.64 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=46.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-|++.|+||+|||++|.++|..+ |.....+++.... ..+. .....++..+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~---------------------~~~vGese~~ir~lF~ 268 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV---------------------QMYIGEGAKLVRDAFA 268 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC---------------------SSCSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh---------------------hcccchHHHHHHHHHH
Confidence 467889999999999999999888766 5566656543110 0111 12345566666
Q ss_pred HHHhCCCcEEEEeC
Q 015657 92 EAKKKNVDVVIVDT 105 (403)
Q Consensus 92 ~~~~~~~D~VIIDt 105 (403)
.++....-+|+||-
T Consensus 269 ~A~~~aP~IifiDE 282 (434)
T 4b4t_M 269 LAKEKAPTIIFIDE 282 (434)
T ss_dssp HHHHHCSEEEEEEC
T ss_pred HHHhcCCeEEeecc
Confidence 66655677888885
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.90 E-value=0.0054 Score=57.95 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
|.+|+++|++||||||++..|+..+ . ...+++.|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~--~~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--P--GFYNINRDD 36 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--T--TEEEECHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--C--CcEEecccH
Confidence 5789999999999999998888632 2 355677773
No 435
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0044 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+.++++++|++||||||++..|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999988765
No 436
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0052 Score=54.06 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
+|++.|.+||||||++..|+..|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998774
No 437
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.88 E-value=0.0039 Score=61.46 Aligned_cols=137 Identities=12% Similarity=0.041 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
+.++++|.+|+||||+...|..........+. +..- |.. ......+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~---~gt---------T~~~~~~~~------------------- 210 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYF---PGT---------TLDMIEIPL------------------- 210 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEEC---TTS---------SCEEEEEEC-------------------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCC---CCe---------EEeeEEEEe-------------------
Confidence 45889999999999999999876543322221 1110 110 000111111
Q ss_pred CCCcEEEEeCCCCcccc---HH-hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQID---KA-MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d---~~-l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
+.++.||||||....+ .. ...++..+...-..+.+++++++... ......+......-...-+++||.|....
T Consensus 211 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 211 -ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp -STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred -CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence 2358999999987432 11 11222222211345778888888211 00000011111111234589999996532
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 015657 170 ---GGAALSVKEVSGKPIK 185 (403)
Q Consensus 170 ---~~~~~~~~~~~g~pi~ 185 (403)
..+...+.+..|.++.
T Consensus 290 ~~~~~~~~~~~~~~g~~l~ 308 (369)
T 3ec1_A 290 TKLEKADSLYANQLGELLS 308 (369)
T ss_dssp EEGGGHHHHHHHHBTTTBC
T ss_pred ccHHHHHHHHHHhcCCccC
Confidence 3344556667887763
No 438
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.88 E-value=0.0053 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+|.+|+++|++||||||++..|+..|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998776
No 439
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.86 E-value=0.006 Score=54.89 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-----hCC-CcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK-----KQG-KSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-----~~G-~kVllVd~D 52 (403)
-+.+++++|.+|+|||+.|..++..+. +.| ++|.+..+|
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 356889999999999999988766654 568 777666655
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.86 E-value=0.0047 Score=54.66 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|+|+|.+||||||++..|+..| | +.++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 89999999999999999888766 3 4466777
No 441
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.85 E-value=0.013 Score=57.27 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=46.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+++-++++|++|+|||++|..+|..+ +..+..+++. .+ .... . + .....++..+..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~--------~l--~~~~-----~--g---~~~~~~~~~f~~a 139 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DL--VSKW-----M--G---ESEKLVKQLFAMA 139 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH--------HH--HSCC-------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH--------HH--hhhh-----c--c---hHHHHHHHHHHHH
Confidence 45668999999999999999999877 4556555532 11 0100 0 0 1123445555666
Q ss_pred HhCCCcEEEEeCCCCc
Q 015657 94 KKKNVDVVIVDTAGRL 109 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l 109 (403)
......+++||=...+
T Consensus 140 ~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 140 RENKPSIIFIDQVDAL 155 (355)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HHcCCeEEEEechHhh
Confidence 5557789999965544
No 442
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.0059 Score=54.94 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=25.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+.+|+++|++||||||++..|+..+ | +..++.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 3579999999999999998888655 3 3345655
No 443
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.078 Score=47.66 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA 36 (403)
.-|+++|.+||||||+...+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999997665
No 444
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.79 E-value=0.0042 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
++.+++++|++||||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999998888665
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.77 E-value=0.0066 Score=55.38 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+..|++.|.+||||||++..|+..| | +.+++.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 45679999999999999999999887 3 3356654
No 446
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.74 E-value=0.0079 Score=57.14 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCC
Q 015657 97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGD 167 (403)
Q Consensus 97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~ 167 (403)
.+.+.|+||||.-..... . . ...-..+.+++|+|........... ..+ ....+ .-+|.||+|..
T Consensus 202 ~~~~~l~Dt~G~~~~~~~-~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRL-R---P--LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTT-G---G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHH-H---H--HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcc
Confidence 456779999996432110 0 0 1122458899999997654433322 122 22233 44889999954
No 447
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.71 E-value=0.042 Score=52.26 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=30.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
...|.++++.|++|+||||++..++..+ +.++..+++..
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~ 83 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD 83 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence 3456788888999999999999988766 56666666543
No 448
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.71 E-value=0.0059 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+..+++++|++||||||++..|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999888664
No 449
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.71 E-value=0.017 Score=55.47 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
++|.-.+..+++++|+.||||||+...|+..+.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 344445567899999999999999988875554
No 450
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.70 E-value=0.032 Score=56.84 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=46.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
.|+-++++|++|+||||++..+|..+ +..+..+++..+... +. .......+..+..+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----------------~~----g~~~~~~r~lf~~A 104 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----------------FV----GVGAARVRDLFAQA 104 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----------------CT----THHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----------------Hh----cccHHHHHHHHHHH
Confidence 45568899999999999999988755 555555554311100 00 01233455666776
Q ss_pred HhCCCcEEEEeCCCC
Q 015657 94 KKKNVDVVIVDTAGR 108 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~ 108 (403)
......+++||=+..
T Consensus 105 ~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 105 KAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHTCSEEEEEETGGG
T ss_pred HhcCCCEEEEechhh
Confidence 656788999997643
No 451
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.69 E-value=0.026 Score=55.58 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+++.++++|++|+|||+++..+|.. .+..+..++|........ + .....+...+..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~~-----------------g---~~~~~~~~~~~~a 203 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKYV-----------------G---EGEKLVRALFAVA 203 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhcccc-----------------c---hHHHHHHHHHHHH
Confidence 4577999999999999999888755 366777776642221110 0 0123344555555
Q ss_pred HhCCCcEEEEeCCCCc
Q 015657 94 KKKNVDVVIVDTAGRL 109 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l 109 (403)
......+++||=...+
T Consensus 204 ~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHSSSEEEEEETGGGG
T ss_pred HhcCCeEEEEECchhh
Confidence 5556689999966443
No 452
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.68 E-value=0.0069 Score=54.19 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.|+|+|++||||||++..|+..+ |.. +++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~--~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIP--HISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCc--EeeHH
Confidence 47889999999999998888766 443 45553
No 453
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.67 E-value=0.0062 Score=54.81 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.9
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 11 AKSRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
...++++++++|++||||||++..|+..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34466889999999999999999888654
No 454
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.071 Score=54.59 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=93.6
Q ss_pred CEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHHHhhh-------------------ccC
Q 015657 15 PTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGE-------------------QVG 70 (403)
Q Consensus 15 ~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~~~~~-------------------~~g 70 (403)
.+.|+++|- +|.||-.+|+.|+..|+.+|++|.++..|||- |+...+.. +++ -.+
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~-hgevfv~~dg~e~dldlg~yerf~~ 81 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYM-HGEVFVTEDGAETDLDLGHYERFMD 81 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHH-HCCCEECTTCCEECTHHHHHHHHHC
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccc-cceEEEecCCccccccccchhhhcC
Confidence 578899976 99999999999999999999999999999973 33321110 111 000
Q ss_pred Cce-----Ee-----------------CCCCCC--H--HHHHHHHHHHH-HhCCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657 71 VPV-----YT-----------------AGTEVK--P--SQIAKQGLEEA-KKKNVDVVIVDTAGRLQI--DKAMMDELKD 121 (403)
Q Consensus 71 v~v-----~~-----------------~~~~~~--~--~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~--d~~l~~el~~ 121 (403)
+.. ++ .+.... | .+.+++.+..+ +..++|++||+-.|...+ ....++.+.+
T Consensus 82 ~~l~~~~n~ttg~iy~~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~~~~~dv~i~eiggtvgdies~pf~ea~rq 161 (535)
T 3nva_A 82 VNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINNAEITLVEIGGTVGDIESLPFLEAVRQ 161 (535)
T ss_dssp CCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCTTSGGGHHHHHHHHH
T ss_pred CCcccccCcchhHHHHHHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhccCCCCEEEEEeCCccchhcccHHHHHHHH
Confidence 000 00 000000 1 11233334333 236899999998887754 3457777788
Q ss_pred HhhhcCCceEEEEE----ec--cc-------HHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657 122 VKRVLNPTEVLLVV----DA--MT-------GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184 (403)
Q Consensus 122 i~~~~~~~~vllVv----da--~~-------g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi 184 (403)
+...+....++++- .. .. .|..+..++.. .+.+. +|+-|.+..-....-..+.-.+.++-
T Consensus 162 ~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~--GIqPd-ilvcRs~~~l~~~~r~KiaLfc~V~~ 234 (535)
T 3nva_A 162 LKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRI--GIQPD-FIVGRATLPLDDETRRKIALFTNVKV 234 (535)
T ss_dssp HHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHH--TCCCS-EEEEEESSCCCHHHHHHHHHHTTCCG
T ss_pred HHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhC--CCCCC-EEEEecCCCCCHHHHHhhhhhcCCCh
Confidence 87777666665541 11 11 25555554433 23344 44445554433333344444455543
No 455
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.63 E-value=0.039 Score=50.25 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCC--ceEeCCCCCCHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGV--PVYTAGTEVKPSQIAKQG 89 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv--~v~~~~~~~~~~~~~~~~ 89 (403)
....+.+++|.-|+||||.+..++..+..+|++|+++..-. .|.. .. ......|+ +...... +.++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~-~~---~I~Sr~G~~~~a~~v~~---~~di---- 94 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYH-KE---KVVSHNGNAIEAINISK---ASEI---- 94 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEEEEESS---GGGG----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcch-hh---hHHHhcCCceeeEEeCC---HHHH----
Confidence 45689999999999999999888999998999999885421 1111 01 12222332 2322211 1111
Q ss_pred HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657 90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123 (403)
Q Consensus 90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~ 123 (403)
++.+ ..++|+|+||=+-.+. ...+..+..+.
T Consensus 95 ~~~i-~~~~dvV~IDEaQFf~--~~~v~~l~~la 125 (219)
T 3e2i_A 95 MTHD-LTNVDVIGIDEVQFFD--DEIVSIVEKLS 125 (219)
T ss_dssp GGSC-CTTCSEEEECCGGGSC--THHHHHHHHHH
T ss_pred HHHH-hcCCCEEEEechhcCC--HHHHHHHHHHH
Confidence 1111 2579999999888764 34455555554
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.62 E-value=0.014 Score=54.54 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~ 51 (403)
.+..+++++|+.||||||+...|+..+... .-+|.+..-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 355789999999999999999999988754 456655443
No 457
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.61 E-value=0.063 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 015657 16 TVILLAGLQGVGKTTVSAKLAN 37 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~ 37 (403)
--|+++|.+|+||||+...|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999988763
No 458
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.60 E-value=0.0048 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
+++++++|++||||||++..|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999987765
No 459
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.029 Score=56.34 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE 91 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~ 91 (403)
.+|+-|++.|+||+|||++|.++|..+ |.....+++.-.- ..+. .....++..+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~---------------------sk~vGesek~ir~lF~ 269 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI---------------------QKYLGDGPRLCRQIFK 269 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC---------------------CSSSSHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh---------------------hccCchHHHHHHHHHH
Confidence 467889999999999999999988766 4555555533100 0111 13345677777
Q ss_pred HHHhCCCcEEEEeC
Q 015657 92 EAKKKNVDVVIVDT 105 (403)
Q Consensus 92 ~~~~~~~D~VIIDt 105 (403)
.++....-+|+||-
T Consensus 270 ~Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 270 VAGENAPSIVFIDE 283 (437)
T ss_dssp HHHHTCSEEEEEEE
T ss_pred HHHhcCCcEEEEeh
Confidence 77666677888883
No 460
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.59 E-value=0.023 Score=58.87 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCC--CcEEEEeccCC
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQG--KSCMLVAGDVY 54 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G--~kVllVd~D~~ 54 (403)
...++++|+|++|+||||++..++.... ... ..|..++.+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 4578999999999999999998876432 112 24666666544
No 461
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.57 E-value=0.01 Score=53.28 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.|+++|.+||||||++..|+..+ |..+ ++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 37899999999999999998876 5544 4543
No 462
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.53 E-value=0.013 Score=52.73 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV 49 (403)
+.|+|-|.-||||||.+..|+.+|. +|++|.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 5788999999999999999999996 58888654
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.52 E-value=0.013 Score=58.35 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
++.+|+|+|++||||||++..||..+. ..+|.+|.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 357899999999999999999998774 34788884
No 464
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.022 Score=54.82 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657 18 ILLAGLQGVGKTTVSAKLANYLKKQG 43 (403)
Q Consensus 18 I~v~G~gGsGKTTla~~LA~~L~~~G 43 (403)
++++|++|+||||++..+|..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 88999999999999999999886543
No 465
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.46 E-value=0.0061 Score=55.26 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=23.6
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+++|.-.+..+++|+|++||||||+...|+..+
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445555567889999999999999999998766
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.46 E-value=0.0093 Score=53.88 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=46.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 96 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~ 96 (403)
+|++.|+|||||||.|..|+..+ |... +-.+|..|...... ..++... .-+......-|.+++...+.... .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~~~-istGdllR~~i~~~-t~lg~~~--~~~~~~G~lvpd~iv~~lv~~~l-~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GFVH-ISTGDILREAVQKG-TPLGKKA--KEYMERGELVPDDLIIALIEEVF-P 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCEE-EEHHHHHHHHHHHT-CHHHHHH--HHHHHHTCCCCHHHHHHHHHHHC-C
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCeE-EcHHHHHHHHHHhc-ChhhhhH--HHHHhcCCcCCHHHHHHHHHHhh-c
Confidence 57888999999999999998766 4432 44556555322100 0000000 00001112335566655555543 4
Q ss_pred CCcEEEEeCCCCc
Q 015657 97 NVDVVIVDTAGRL 109 (403)
Q Consensus 97 ~~D~VIIDtpg~l 109 (403)
..+-+|+|+=|+-
T Consensus 74 ~~~~~ilDGfPRt 86 (206)
T 3sr0_A 74 KHGNVIFDGFPRT 86 (206)
T ss_dssp SSSCEEEESCCCS
T ss_pred cCCceEecCCchh
Confidence 4566889986654
No 467
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.054 Score=50.74 Aligned_cols=55 Identities=5% Similarity=-0.018 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 72 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~ 72 (403)
+.++++++|.+|+||||++..++....++|.+++++..+-.. .++.......|++
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~----~~l~~~~~~~G~d 74 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL----QLIIRILSRFGVD 74 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH----HHHHHHHHHTTCC
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH----HHHHHHHHHcCCC
Confidence 458888999999999999999999989999999999987332 2333344444544
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.44 E-value=0.031 Score=57.49 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH-HHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA-~~L~~~G~kVllVd~D~ 53 (403)
+..+++++|++||||||++..++ ..+...+..+++++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 55789999999999999999953 33434345566777654
No 469
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.44 E-value=0.0075 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
.++++++|++||||||+...|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999987664
No 470
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.42 E-value=0.0076 Score=53.97 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.|+|+|++||||||++..|+..+ |.. +++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~--~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIP--HISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCC--EEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCc--EEeHH
Confidence 47889999999999998887554 443 45553
No 471
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.23 Score=45.02 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=60.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH-HHhCCC--cEEEEeccCCChhhHHHHHHhhhccC----CceE-eCC-------C-
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANY-LKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVG----VPVY-TAG-------T- 78 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~-L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~g----v~v~-~~~-------~- 78 (403)
.+.++++|+.||||||+...+... +...+. .+.++-..+.+..+...........+ ..+- ... .
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH 155 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence 367899999999999876655443 333333 33344444555444332222222111 1110 000 0
Q ss_pred ----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhH-HHHHHHhhhcCCceEEEEEecccH
Q 015657 79 ----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEVLLVVDAMTG 140 (403)
Q Consensus 79 ----~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~-~el~~i~~~~~~~~vllVvda~~g 140 (403)
...|..+. +.+.. .-.+++++|||-+-....+.... ..+..+.... ++.-+++..|+..
T Consensus 156 ~~Ivv~Tpg~l~-~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~ 219 (235)
T 3llm_A 156 ASIMFCTVGVLL-RKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATID 219 (235)
T ss_dssp SEEEEEEHHHHH-HHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSC
T ss_pred CeEEEECHHHHH-HHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCC
Confidence 01233222 22322 13688999999987643443333 3444444433 3445677777544
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.015 Score=54.62 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 53 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~ 53 (403)
.+..++++|++|+|||+++..++..+ +.++..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 45678899999999999999999887 56777777653
No 473
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.36 E-value=0.047 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLA 36 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA 36 (403)
.+..++++|.+||||||+...|.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34558999999999999998887
No 474
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.36 E-value=0.01 Score=54.75 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
+|.+|+++|++||||||++..|+..| | ..+++.|
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g 41 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG 41 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence 46789999999999999999998776 3 3356665
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.35 E-value=0.015 Score=52.39 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..+.|+|+|++|+||||++..|+ ++|. -+|..|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 35779999999999999996655 5566 467777
No 476
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.34 E-value=0.016 Score=58.40 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+++-++++|++|+|||+++..+|..+ .+..+..+++.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 356789999999999999999998776 24555555543
No 477
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.32 E-value=0.068 Score=57.84 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
.+|+-|++.|++|+|||+++.++|..+ |..+..|++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh
Confidence 568899999999999999998877543 666666664
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.32 E-value=0.012 Score=61.22 Aligned_cols=39 Identities=33% Similarity=0.610 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEecc
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGD 52 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D 52 (403)
+..+++++|++||||||++..|+..+... |..+.++|.|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 56889999999999999999999999765 4578788887
No 479
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.30 E-value=0.022 Score=61.31 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
..++++|++|+|||++|..|+..+...+.++..++|.
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 4689999999999999999999998778888888875
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.28 E-value=0.012 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L 39 (403)
.|++.|++||||||++..|+..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998877
No 481
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.25 E-value=0.068 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 015657 17 VILLAGLQGVGKTTVSAKLANY 38 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~ 38 (403)
.++++|.+||||||+...|...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999888754
No 482
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.20 E-value=0.011 Score=58.29 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=67.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 95 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~ 95 (403)
..++++|.+|+||||+...|.........+...+.. .|.. +. ....+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~---~~gt-----T~----~~~~~~~------------------- 209 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH---FPGT-----TL----DLIDIPL------------------- 209 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC---CC-------------CEEEEES-------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCC---CCCe-----ec----ceEEEEe-------------------
Confidence 458899999999999998887654211001111110 1111 00 0111111
Q ss_pred CCCcEEEEeCCCCcccc---H-HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657 96 KNVDVVIVDTAGRLQID---K-AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 169 (403)
Q Consensus 96 ~~~D~VIIDtpg~l~~d---~-~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~ 169 (403)
...+.||||||....+ . -...++..+...-..+.+++++++... ......+..+...-...-+++||.|....
T Consensus 210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 2348999999986532 1 112233333323345677888887210 00000011111111234589999996543
Q ss_pred h---hHHHHHHHHhCCCe
Q 015657 170 G---GAALSVKEVSGKPI 184 (403)
Q Consensus 170 ~---~~~~~~~~~~g~pi 184 (403)
. .+...+.+..|.++
T Consensus 289 ~~~~~~~~~~~~~~g~~l 306 (368)
T 3h2y_A 289 TKLEKADELYKNHAGDLL 306 (368)
T ss_dssp EEHHHHHHHHHHHBTTTB
T ss_pred ccHHHHHHHHHHHhCCcc
Confidence 2 33344556677766
No 483
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.20 E-value=0.018 Score=58.49 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKK 41 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~ 41 (403)
..-++++|++|+||||++..||..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999998875
No 484
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.18 E-value=0.0061 Score=55.41 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=19.1
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHH-HHH
Q 015657 8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA-NYL 39 (403)
Q Consensus 8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA-~~L 39 (403)
+++.-.+..+++++|+.||||||++..|+ ..+
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44444556889999999999999998888 665
No 485
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.15 E-value=0.012 Score=51.42 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.+++++|++||||||++..|+.. .+.. ..++.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~---~~g~-~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ---LDNS-AYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH---SSSE-EEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc---cCCe-EEEccc
Confidence 57899999999999999988752 2223 356655
No 486
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.12 E-value=0.029 Score=56.58 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 50 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd 50 (403)
+++-++++|++|+|||++|..+|..+... ..+..++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEe
Confidence 45778999999999999999999887432 3444444
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.10 E-value=0.018 Score=53.30 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=34.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~ 57 (403)
+..++++|.+|+|||+++..++..+...+.++..++|....+.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 3557899999999999999998877766778888888765443
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.013 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLK 40 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~ 40 (403)
+|.+|++.|..||||||++..|+.+|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 468899999999999999999998774
No 489
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.99 E-value=0.014 Score=54.15 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+..+|+|+|+.||||||++..|+..|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44689999999999999998887554
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.97 E-value=0.011 Score=53.01 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
|.+|+++|.+||||||++..|+..+ | ..++|+|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence 5679999999999999998887554 4 3467776
No 491
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.92 E-value=0.054 Score=60.52 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh----CCCcEEEEeccC
Q 015657 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDV 53 (403)
Q Consensus 12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~----~G~kVllVd~D~ 53 (403)
...+++|.|+|+||+||||+|..++..... ....|..++...
T Consensus 144 ~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 356799999999999999999988876432 223566666554
No 492
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.88 E-value=0.091 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLAN 37 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~ 37 (403)
..++|.|+|.||+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999999988775
No 493
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.043 Score=51.73 Aligned_cols=26 Identities=46% Similarity=0.552 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657 17 VILLAGLQGVGKTTVSAKLANYLKKQ 42 (403)
Q Consensus 17 iI~v~G~gGsGKTTla~~LA~~L~~~ 42 (403)
.++++|++|+||||++..++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 38999999999999999999887643
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.83 E-value=0.028 Score=55.32 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657 16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52 (403)
Q Consensus 16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D 52 (403)
.-++|+|++|+||||++..|+..+...|.+|.++|.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468899999999999999999888889999888754
No 495
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.78 E-value=0.019 Score=49.58 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.9
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYL 39 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L 39 (403)
+.-.+..++++.|+.|+||||+...|+..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 333566899999999999999999999887
No 496
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.77 E-value=0.05 Score=59.34 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCH
Q 015657 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKP 82 (403)
Q Consensus 10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~ 82 (403)
+....+..++++|++|+||||++..||..+.. .+.++..+++ +..+.........
T Consensus 186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~------------------~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM------------------GSLLAGAKYRGEF 247 (854)
T ss_dssp HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------------------CH
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh------------------HHhhccCccchHH
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEe
Q 015657 83 SQIAKQGLEEAKKK-NVDVVIVD 104 (403)
Q Consensus 83 ~~~~~~~l~~~~~~-~~D~VIID 104 (403)
...++..+..+... ..-+++||
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe
No 497
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.75 E-value=0.077 Score=51.27 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 93 (403)
Q Consensus 14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~ 93 (403)
+..+++++|++||||||+...|+..+......|.+-+.+...... + ...+.++. +... ..+.++..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~--~~~i~~~~-ggg~----~~r~~la~a 236 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------H--KNYTQLFF-GGNI----TSADCLKSC 236 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------C--SSEEEEEC-BTTB----CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------c--hhEEEEEe-CCCh----hHHHHHHHH
Confidence 345789999999999999999887765544455443332111100 0 01111221 1111 223344444
Q ss_pred HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCc-eEEEEEecccHHHHHHHH
Q 015657 94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-EVLLVVDAMTGQEAAALV 147 (403)
Q Consensus 94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~-~vllVvda~~g~~~~~~~ 147 (403)
...+.|++|+|=|... .....+..+. .-. .++++..+.........+
T Consensus 237 L~~~p~ilildE~~~~----e~~~~l~~~~---~g~~tvi~t~H~~~~~~~~dri 284 (330)
T 2pt7_A 237 LRMRPDRIILGELRSS----EAYDFYNVLC---SGHKGTLTTLHAGSSEEAFIRL 284 (330)
T ss_dssp TTSCCSEEEECCCCST----HHHHHHHHHH---TTCCCEEEEEECSSHHHHHHHH
T ss_pred hhhCCCEEEEcCCChH----HHHHHHHHHh---cCCCEEEEEEcccHHHHHhhhh
Confidence 4578999999987752 2222222221 112 356666665444443333
No 498
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.74 E-value=0.15 Score=50.58 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=35.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCChhhHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQL 62 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~rp~~~~~l 62 (403)
.+...++++|++|+||||++..|+....+. +..|.++.++ .|+..+..+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG-ER~~Ev~~~ 222 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID-ERPEEVTEM 222 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES-SCHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec-CChHHHHHH
Confidence 345668999999999999999999988764 3445556555 555555444
No 499
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.72 E-value=0.044 Score=55.98 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=45.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 92 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~ 92 (403)
..++-++++|++|+|||+++..++..+ +..+..++|. .+. .. ........++..+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~--------~l~--~~----------~~g~~~~~~~~~f~~ 292 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP--------EIM--SK----------LAGESESNLRKAFEE 292 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH--------HHH--TS----------CTTHHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch--------Hhh--hh----------hcchhHHHHHHHHHH
Confidence 456778999999999999998887654 6667666653 110 00 001122344566666
Q ss_pred HHhCCCcEEEEeCC
Q 015657 93 AKKKNVDVVIVDTA 106 (403)
Q Consensus 93 ~~~~~~D~VIIDtp 106 (403)
+......+++||=.
T Consensus 293 A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 293 AEKNAPAIIFIDEL 306 (489)
T ss_dssp HHHTCSEEEEEESH
T ss_pred HHhcCCcEEEecch
Confidence 65556678999853
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.72 E-value=0.023 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 51 (403)
Q Consensus 13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~ 51 (403)
.+++.++++|++|+||||++..+|..+ +.....+++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence 456789999999999999999988765 445555543
Done!