RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015658
(403 letters)
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 311 bits (798), Expect = e-103
Identities = 152/255 (59%), Positives = 192/255 (75%), Gaps = 1/255 (0%)
Query: 128 GNQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGAR 187
G +SL +DPE+++++++EK RQ +G+ELIASENF RA +EALGS L NKYSEGYPG R
Sbjct: 4 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKR 63
Query: 188 YYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGL 247
YY G + +D+IE LC RAL+AFDLD WGVNVQPYS + AN AVYT LL P DRIMGL
Sbjct: 64 YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGL 123
Query: 248 DSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILIC 307
D P GGHL+HGY + + SA SIFFES PYK+NP+TG IDY +L A +RP+++I
Sbjct: 124 DLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182
Query: 308 GGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLR 367
G S+Y R DY R R++ D+ A L+ DMAHISGL+AAK + SPF + DIVT+TTHK+LR
Sbjct: 183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 242
Query: 368 GPRGGIIFFRRGKKP 382
G R G+IF+R+G K
Sbjct: 243 GARSGLIFYRKGVKA 257
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 303 bits (776), Expect = e-100
Identities = 156/253 (61%), Positives = 192/253 (75%), Gaps = 1/253 (0%)
Query: 129 NQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARY 188
Q L +D E++DI++KE RQ G+ELIASENF RAV+EALGS L NKYS GYPG RY
Sbjct: 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 68
Query: 189 YTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 248
Y G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 69 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 128
Query: 249 SPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICG 308
P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G
Sbjct: 129 LPDGGHLTHGFMT-DKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG 187
Query: 309 GSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRG 368
S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C +VT+TTHK+LRG
Sbjct: 188 TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 247
Query: 369 PRGGIIFFRRGKK 381
R G+IF+RRG +
Sbjct: 248 CRAGMIFYRRGVR 260
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 285 bits (731), Expect = 6e-94
Identities = 128/270 (47%), Positives = 170/270 (62%), Gaps = 18/270 (6%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
+ LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G +Y+D +E L ERA + F NVQP+S AN AVY +L GD ++G+
Sbjct: 62 GGCEYVDIVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGM-- 115
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
+LSHG H G V+ + + + Y V+P+T IDY+ + EKA +RPK+++
Sbjct: 116 ----NLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA 171
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP 369
S+YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+LRGP
Sbjct: 172 SAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP 231
Query: 370 RGGIIFFRRGKK--------PRKQGIPLNH 391
RGG+I + P QG PL H
Sbjct: 232 RGGMILCQEQFAKQIDKAIFPGIQGGPLMH 261
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 281 bits (719), Expect = 6e-92
Identities = 119/274 (43%), Positives = 168/274 (61%), Gaps = 22/274 (8%)
Query: 129 NQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARY 188
++ D E++ ME+EK RQ + IELIASEN+ VM+A GS LTNKY+EGYPG RY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 189 YTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 248
Y G +Y+D +E L +RA + F NVQP+S + ANFAVYT LL PGD ++G+
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGM- 118
Query: 249 SPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICG 308
+L+HG H G V+ + + PY ++ TG+IDY LE++A +++PK++I G
Sbjct: 119 -----NLAHGGHLTHGSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGG 172
Query: 309 GSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRG 368
S+Y D+ + R+IAD GA L DMAH++GL+AA +P + +VT+TTHK+L G
Sbjct: 173 FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAG 232
Query: 369 PRGGIIFFRRGKK-----------PRKQGIPLNH 391
PRGG+I + G + P QG PL H
Sbjct: 233 PRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMH 266
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 112 bits (280), Expect = 8e-28
Identities = 32/253 (12%), Positives = 62/253 (24%), Gaps = 43/253 (16%)
Query: 172 GSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVN--VQPYSCTSA 229
G+ + + G ++G++ ++K +G + + A
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYA-----LAESVKNI------FGYQYTIPTHQGRGA 101
Query: 230 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPG-------GKKVSAASIFFESFPYKVN 282
L+ ++ GLD S+ + G V I
Sbjct: 102 EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRY 161
Query: 283 PQTGYIDYEKLEEKAMDYRPK---------ILICGGSSYPREWDYGRFRQIADKCGAVLM 333
G D E LE + P G + IA K ++
Sbjct: 162 DFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV 221
Query: 334 CDMAHISGLIAAKELASP--------------FDYCDIVTSTTHKSLRGPRGGIIFFRRG 379
D A + + + Y D++ + K P GG++ +
Sbjct: 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
Query: 380 KKPRKQGIPLNHG 392
Sbjct: 282 SFFDVYTECRTLC 294
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 97.4 bits (241), Expect = 1e-22
Identities = 34/280 (12%), Positives = 74/280 (26%), Gaps = 41/280 (14%)
Query: 151 FKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQY-------IDQIENLCF 203
FK ++ S + G K+ G ++ + + +L
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 204 ---------ERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGH 254
+ A + ++ D ++AN V + L+ GD ++ +
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 255 LSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPK----------I 304
+ G + + + D +K+ E A P+
Sbjct: 120 YNSALAM-AGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLA 178
Query: 305 LICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELA----------SPFDY 354
+I G+ ++ + + D A + + P D
Sbjct: 179 VIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDP 238
Query: 355 CDIVTSTTHKSLRGPRGGIIFFRRGKKPRKQGIPLNHGDV 394
IV + HK G ++ + Q +H
Sbjct: 239 GIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHF 278
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 88.8 bits (219), Expect = 6e-20
Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 37/241 (15%)
Query: 172 GSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANF 231
+ ++++ G Y G++ ++ ++A + F+ D + + A
Sbjct: 54 NAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAEN 104
Query: 232 AVYTGLLLPGDRIMGLDSPSGGHLSHGYHTP-----GGKKVSAASIFFESFPYKVNPQTG 286
++ LL + +P H T G K + G
Sbjct: 105 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG 164
Query: 287 YIDYEKLEEKAMDYRPKILIC---------GGSSYPREWDYGRFRQIADKCGAVLMCDMA 337
D +KL+E + ++ G + +IA + G ++ D A
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224
Query: 338 HISGLIAAKELASP--------------FDYCDIVTSTTHKSLRGPRGGIIFFRRGKKPR 383
+ P + Y D +T + K GG++ R ++
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284
Query: 384 K 384
Sbjct: 285 T 285
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 88.3 bits (218), Expect = 1e-19
Identities = 29/227 (12%), Positives = 53/227 (23%), Gaps = 39/227 (17%)
Query: 179 YSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVN--VQPYSCTSANFAVYTG 236
++ G Y G++ E+ +K +G V + A +
Sbjct: 61 WAGMMIGDEAYAGSENFYH-----LEKTVKEL------FGFKHIVPTHQGRGAENLLSQL 109
Query: 237 LLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEK 296
+ PG + G + + G P G ID KL
Sbjct: 110 AIKPGQYVAG---NMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATL 166
Query: 297 AMDYRPKILIC---------GGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKE 347
+ + + G + ++A G + D +
Sbjct: 167 IKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIK 226
Query: 348 L--------------ASPFDYCDIVTSTTHKSLRGPRGGIIFFRRGK 380
F Y D T + K GG + +
Sbjct: 227 EQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEE 273
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 50.7 bits (120), Expect = 2e-07
Identities = 30/268 (11%), Positives = 64/268 (23%), Gaps = 25/268 (9%)
Query: 133 PLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGN 192
+ D +I ++ + L++ + G +
Sbjct: 42 GIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDP 101
Query: 193 Q-------YIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIM 245
Q + + N E K L+ P S + + +
Sbjct: 102 QPKASGASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNV 158
Query: 246 GLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPK-- 303
+ + SH V ++ Y+ E +E
Sbjct: 159 VI----YPYASHKSPIKAVSFVGMNMRLV---ETVLDGDRVYVPVEDIENAIKKEIELGN 211
Query: 304 ----ILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFD--YCDI 357
+ D +I + + + A+ E D
Sbjct: 212 RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDA 271
Query: 358 VTSTTHKSLRGPRGGIIFFRRGKKPRKQ 385
V S++ K+L P GG + + + K+
Sbjct: 272 VVSSSDKNLLTPIGGGLVYSTDAEFIKE 299
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 46.3 bits (109), Expect = 4e-06
Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 36/221 (16%)
Query: 163 VCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQ 222
+ A + + + G R+ G Q + L D +
Sbjct: 64 LIAAAKAGM-----DSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDA--------IL 110
Query: 223 PYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVN 282
SC AN ++ LL D I+ L+H G + A + + +
Sbjct: 111 YSSCFDANGGLFETLLGAEDAIIS------DALNHASIIDGVRLCKAKRYRYANNDMQ-- 162
Query: 283 PQTGYIDYEKLEEKAMD-YRPKILICGGSSYPRE---WDYGRFRQIADKCGAVLMCDMAH 338
+ E ++A + +LI + + + +ADK A++M D +H
Sbjct: 163 ------ELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSH 216
Query: 339 ISGLIAAKELASPFDYC-----DIVTSTTHKSLRGPRGGII 374
G + S DI+T T K+L G GG
Sbjct: 217 AVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYT 257
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 37.5 bits (85), Expect = 0.002
Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 21/231 (9%)
Query: 154 IELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENL----CFERALKA 209
I+ + + + +AL ++ +GY + T + +D+I+ L
Sbjct: 5 IDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPK 58
Query: 210 FDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSA 269
F L D V A FAV L ++ + + Y + + +
Sbjct: 59 F-LGCDV--ARVTN-GAREAKFAVMHSLAKKDAWVVMDE-------NCHYSSYVAAERAG 107
Query: 270 ASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCG 329
+I + ++ + E+ +L + ++IA C
Sbjct: 108 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 167
Query: 330 AVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPRGGIIFFRRGK 380
+ + + + I ++ D + + HKS+ + + +
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 218
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 34.4 bits (77), Expect = 0.023
Identities = 23/243 (9%), Positives = 60/243 (24%), Gaps = 25/243 (10%)
Query: 158 ASENF--VCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSD 215
+S+N V +AL S Y ++ Q++ + + F+ D +
Sbjct: 8 SSDNIAGASPEVAQAL----VKHSSGQAGP---YGTDELTAQVK----RKFCEIFERDVE 56
Query: 216 NWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFE 275
+ V + T+AN + + P I + + G + +
Sbjct: 57 VFLVP----TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAK--LMTVD 110
Query: 276 SFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREW----DYGRFRQIADKCGAV 331
K++ + +P + ++ + +
Sbjct: 111 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLG 170
Query: 332 LMCDMAHISGLIAA--KELASPFDYCDIVTSTTHKSLRGPRGGIIFFRRGKKPRKQGIPL 389
L D + + + + A + + + G +
Sbjct: 171 LHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYR 230
Query: 390 NHG 392
Sbjct: 231 RKR 233
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 54
Score = 27.8 bits (62), Expect = 0.35
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 54 SKPLQLLEERTEKLHSGNNDERVDKDDEQEEV 85
++P+ L +K+ GN + V + +E+
Sbjct: 4 TRPIIELSNTADKIAEGNLEAEVPHQNRADEI 35
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 27.6 bits (60), Expect = 2.8
Identities = 45/254 (17%), Positives = 77/254 (30%), Gaps = 47/254 (18%)
Query: 138 EIFDIMEKEKQRQFKGIELI-------ASENF-----VCRAVMEALGSHLTNKY--SEGY 183
I D++ ++ + KGI++I +F + A +A+ N Y SEG
Sbjct: 14 AIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAI-KEGHNYYGDSEGL 72
Query: 184 PGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDR 243
P R I + D + T A ++ LL PGD
Sbjct: 73 PELR--------KAIVEREKRKNGVDITPDDVRV-----TAAVTEALQLIFGALLDPGDE 119
Query: 244 IMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPK 303
I+ + PS + GGK V Y+ + + K + R K
Sbjct: 120 IL-VPGPSYPPYTGLVKFYGGKPV----------EYRTIEEEDWQPDIDDIRKKITDRTK 168
Query: 304 ILICGGSSYPREWDYG-----RFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCD-- 356
+ + P Y IA + ++ D + + ++ D
Sbjct: 169 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 228
Query: 357 -IVTSTTHKSLRGP 369
IV + K
Sbjct: 229 VIVMNGLSKVYFAT 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,344
Number of extensions: 75760
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 17
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)