Query 015659
Match_columns 403
No_of_seqs 315 out of 3180
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.2E-53 2.5E-58 401.7 30.8 288 54-402 1-292 (397)
2 KOG0549 FKBP-type peptidyl-pro 100.0 1.3E-30 2.8E-35 219.5 15.7 176 94-305 1-180 (188)
3 KOG0545 Aryl-hydrocarbon recep 99.9 4.5E-28 9.8E-33 213.2 9.9 214 162-401 9-264 (329)
4 COG0545 FkpA FKBP-type peptidy 99.9 5.5E-27 1.2E-31 202.2 12.0 118 31-153 86-204 (205)
5 KOG0544 FKBP-type peptidyl-pro 99.9 1.4E-26 3E-31 172.3 11.6 105 47-153 2-107 (108)
6 KOG0544 FKBP-type peptidyl-pro 99.9 7.6E-26 1.6E-30 168.4 11.2 107 164-301 2-108 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.5E-23 3.3E-28 181.0 11.9 107 161-301 99-205 (205)
8 KOG0549 FKBP-type peptidyl-pro 99.9 7.7E-23 1.7E-27 172.6 12.8 110 44-155 66-177 (188)
9 PRK11570 peptidyl-prolyl cis-t 99.9 7E-23 1.5E-27 182.9 13.1 118 31-153 87-205 (206)
10 KOG0552 FKBP-type peptidyl-pro 99.9 5.4E-22 1.2E-26 175.7 12.0 108 42-153 116-225 (226)
11 TIGR03516 ppisom_GldI peptidyl 99.9 2.4E-21 5.2E-26 169.0 13.1 112 39-154 62-176 (177)
12 PRK10902 FKBP-type peptidyl-pr 99.8 8.7E-21 1.9E-25 175.5 13.5 120 31-155 131-250 (269)
13 KOG0543 FKBP-type peptidyl-pro 99.8 4.7E-20 1E-24 174.7 17.9 274 6-402 39-326 (397)
14 PRK11570 peptidyl-prolyl cis-t 99.8 1E-18 2.2E-23 156.1 13.2 107 161-301 100-206 (206)
15 PF00254 FKBP_C: FKBP-type pep 99.8 1.2E-18 2.6E-23 137.3 10.0 92 58-151 1-94 (94)
16 TIGR03516 ppisom_GldI peptidyl 99.7 1.5E-17 3.3E-22 145.1 13.2 83 214-301 94-176 (177)
17 PRK15095 FKBP-type peptidyl-pr 99.7 5.2E-18 1.1E-22 145.2 9.9 129 61-201 4-137 (156)
18 KOG0552 FKBP-type peptidyl-pro 99.7 1.2E-17 2.6E-22 148.1 11.7 82 214-301 143-226 (226)
19 COG1047 SlpA FKBP-type peptidy 99.7 9E-18 1.9E-22 142.8 9.9 129 61-201 2-134 (174)
20 PF00254 FKBP_C: FKBP-type pep 99.7 7.9E-17 1.7E-21 126.8 12.3 82 214-298 13-94 (94)
21 PRK10902 FKBP-type peptidyl-pr 99.7 1.3E-16 2.9E-21 147.7 13.7 108 161-303 144-251 (269)
22 PRK10737 FKBP-type peptidyl-pr 99.7 8.7E-17 1.9E-21 141.2 9.2 128 61-201 2-133 (196)
23 KOG4234 TPR repeat-containing 99.5 3.2E-14 7E-19 122.6 8.5 76 315-400 92-167 (271)
24 PRK15095 FKBP-type peptidyl-pr 99.5 1.9E-13 4E-18 117.1 8.5 64 214-278 13-76 (156)
25 KOG0547 Translocase of outer m 99.3 4.3E-12 9.4E-17 122.5 7.8 79 306-399 103-181 (606)
26 COG1047 SlpA FKBP-type peptidy 99.3 1.4E-11 3.1E-16 105.1 9.1 64 214-278 11-74 (174)
27 KOG0553 TPR repeat-containing 99.3 5.8E-12 1.3E-16 115.5 6.8 75 310-399 73-147 (304)
28 PRK10737 FKBP-type peptidyl-pr 99.2 3.6E-11 7.8E-16 105.9 9.0 63 214-278 11-73 (196)
29 KOG0551 Hsp90 co-chaperone CNS 99.2 2.7E-11 5.8E-16 112.1 7.1 74 317-401 80-153 (390)
30 TIGR00990 3a0801s09 mitochondr 99.0 5.6E-10 1.2E-14 117.3 8.8 102 283-401 93-194 (615)
31 KOG0548 Molecular co-chaperone 99.0 3.9E-10 8.4E-15 110.4 6.7 70 316-400 356-425 (539)
32 PF13414 TPR_11: TPR repeat; P 99.0 7.4E-10 1.6E-14 81.4 6.7 66 318-398 3-69 (69)
33 KOG4648 Uncharacterized conser 99.0 2.1E-10 4.6E-15 106.6 4.1 90 311-400 90-198 (536)
34 KOG4642 Chaperone-dependent E3 98.9 5.6E-10 1.2E-14 99.1 3.6 72 315-401 7-78 (284)
35 KOG0550 Molecular chaperone (D 98.7 2.4E-08 5.1E-13 95.3 5.6 75 314-399 245-319 (486)
36 COG0544 Tig FKBP-type peptidyl 98.7 6.5E-08 1.4E-12 96.2 8.2 93 62-163 158-250 (441)
37 TIGR00115 tig trigger factor. 98.6 2.4E-07 5.3E-12 92.5 9.4 89 61-158 146-234 (408)
38 PRK01490 tig trigger factor; P 98.5 2.9E-07 6.4E-12 92.6 9.5 88 61-157 157-244 (435)
39 PF13432 TPR_16: Tetratricopep 98.5 2.7E-07 5.9E-12 66.8 5.1 64 323-401 2-65 (65)
40 PF13424 TPR_12: Tetratricopep 98.3 2.6E-06 5.7E-11 64.0 7.8 73 317-397 4-76 (78)
41 PLN03088 SGT1, suppressor of 98.3 8.3E-07 1.8E-11 86.9 6.3 68 318-400 2-69 (356)
42 TIGR00115 tig trigger factor. 98.2 1.8E-05 3.9E-10 79.1 13.7 79 214-304 155-233 (408)
43 KOG0548 Molecular co-chaperone 98.2 9.4E-07 2E-11 87.1 4.3 67 318-399 2-68 (539)
44 KOG0376 Serine-threonine phosp 98.2 5E-07 1.1E-11 88.3 1.7 70 317-401 3-72 (476)
45 PF14559 TPR_19: Tetratricopep 98.1 2.9E-06 6.2E-11 61.8 4.0 59 328-401 1-59 (68)
46 PF00515 TPR_1: Tetratricopept 98.1 5.1E-06 1.1E-10 51.7 3.9 33 368-400 2-34 (34)
47 PRK01490 tig trigger factor; P 98.1 5.8E-05 1.2E-09 76.1 13.7 78 214-303 166-243 (435)
48 PF13371 TPR_9: Tetratricopept 98.1 1E-05 2.2E-10 59.8 6.0 61 326-401 3-63 (73)
49 PRK15359 type III secretion sy 98.0 8.6E-06 1.9E-10 69.1 5.5 35 367-401 92-126 (144)
50 KOG0546 HSP90 co-chaperone CPR 98.0 1.9E-06 4E-11 81.2 1.0 91 311-401 215-309 (372)
51 KOG1308 Hsp70-interacting prot 98.0 1.6E-06 3.5E-11 81.3 0.3 78 310-402 106-183 (377)
52 PRK15363 pathogenicity island 97.9 5.4E-05 1.2E-09 64.3 8.0 69 318-401 35-103 (157)
53 PRK15359 type III secretion sy 97.9 2.8E-05 6.1E-10 65.9 6.2 67 321-402 27-93 (144)
54 KOG0545 Aryl-hydrocarbon recep 97.8 7.1E-06 1.5E-10 73.6 1.7 81 43-126 7-91 (329)
55 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 5.2E-05 1.1E-09 74.6 6.7 69 316-396 73-141 (453)
56 COG0544 Tig FKBP-type peptidyl 97.7 0.0013 2.9E-08 65.7 16.0 72 222-304 173-244 (441)
57 KOG0550 Molecular chaperone (D 97.7 3.6E-05 7.8E-10 73.9 4.4 76 310-400 41-116 (486)
58 PF07719 TPR_2: Tetratricopept 97.7 7.9E-05 1.7E-09 46.1 4.2 33 368-400 2-34 (34)
59 TIGR02552 LcrH_SycD type III s 97.6 0.00013 2.9E-09 60.5 6.0 82 320-401 19-119 (135)
60 PLN03088 SGT1, suppressor of 97.6 0.00015 3.3E-09 71.0 7.1 69 319-402 37-105 (356)
61 PRK02603 photosystem I assembl 97.5 0.00047 1E-08 60.2 8.7 76 314-401 31-106 (172)
62 CHL00033 ycf3 photosystem I as 97.5 0.0005 1.1E-08 59.7 8.7 75 315-401 32-106 (168)
63 TIGR02552 LcrH_SycD type III s 97.5 0.00024 5.3E-09 58.9 5.9 27 321-347 54-80 (135)
64 PRK11189 lipoprotein NlpI; Pro 97.4 0.00041 8.8E-09 66.3 6.7 66 321-401 101-166 (296)
65 PRK10866 outer membrane biogen 97.3 0.00087 1.9E-08 62.0 8.5 71 320-402 34-104 (243)
66 KOG1310 WD40 repeat protein [G 97.3 0.00029 6.3E-09 69.7 5.1 74 312-400 368-444 (758)
67 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.00094 2E-08 53.6 7.2 34 368-401 77-110 (119)
68 cd00189 TPR Tetratricopeptide 97.3 0.00064 1.4E-08 50.8 5.8 65 321-400 3-67 (100)
69 KOG4555 TPR repeat-containing 97.3 0.0012 2.6E-08 54.0 7.3 72 311-397 36-107 (175)
70 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.00036 7.8E-09 48.1 3.8 33 369-401 3-35 (53)
71 TIGR03302 OM_YfiO outer membra 97.2 0.0013 2.8E-08 60.2 8.5 74 317-402 32-105 (235)
72 KOG0553 TPR repeat-containing 97.2 0.00063 1.4E-08 63.2 6.1 64 323-401 120-183 (304)
73 PRK11189 lipoprotein NlpI; Pro 97.2 0.00073 1.6E-08 64.5 6.9 69 318-401 64-132 (296)
74 KOG4626 O-linked N-acetylgluco 97.2 0.00058 1.3E-08 68.9 5.8 40 363-402 384-423 (966)
75 COG3063 PilF Tfp pilus assembl 97.2 0.0016 3.4E-08 58.5 7.7 75 314-403 31-105 (250)
76 PF12895 Apc3: Anaphase-promot 97.1 0.0013 2.8E-08 50.0 5.8 57 321-393 28-84 (84)
77 COG3063 PilF Tfp pilus assembl 97.1 0.0012 2.6E-08 59.2 6.3 71 318-401 103-173 (250)
78 PF12895 Apc3: Anaphase-promot 97.1 0.001 2.2E-08 50.5 4.9 56 331-400 2-57 (84)
79 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.002 4.3E-08 51.7 6.7 70 319-400 3-72 (119)
80 KOG1840 Kinesin light chain [C 97.0 0.0024 5.1E-08 64.9 8.5 75 316-397 239-313 (508)
81 PF13512 TPR_18: Tetratricopep 97.0 0.0032 6.9E-08 52.7 7.6 73 319-403 11-83 (142)
82 PF13181 TPR_8: Tetratricopept 96.9 0.0013 2.9E-08 40.5 3.8 33 368-400 2-34 (34)
83 KOG4234 TPR repeat-containing 96.9 0.0022 4.7E-08 56.3 6.3 69 318-401 134-202 (271)
84 PRK10370 formate-dependent nit 96.9 0.0023 5E-08 57.3 6.6 84 318-401 73-178 (198)
85 KOG2003 TPR repeat-containing 96.8 0.00045 9.7E-09 67.2 1.5 67 323-399 242-308 (840)
86 PF13525 YfiO: Outer membrane 96.8 0.0046 9.9E-08 55.6 7.7 72 318-401 5-76 (203)
87 PRK15363 pathogenicity island 96.8 0.0014 3.1E-08 55.7 4.0 60 323-397 74-133 (157)
88 PRK09782 bacteriophage N4 rece 96.8 0.0026 5.6E-08 70.1 7.0 85 319-403 610-713 (987)
89 PRK02603 photosystem I assembl 96.8 0.0046 9.9E-08 53.9 7.3 67 319-400 73-153 (172)
90 KOG0624 dsRNA-activated protei 96.8 0.0025 5.3E-08 60.3 5.7 85 317-401 37-140 (504)
91 PF13176 TPR_7: Tetratricopept 96.8 0.0018 4E-08 40.7 3.4 30 369-398 1-30 (36)
92 KOG1125 TPR repeat-containing 96.8 0.00086 1.9E-08 67.2 2.7 78 323-400 435-531 (579)
93 PRK12370 invasion protein regu 96.7 0.0033 7.2E-08 65.4 7.2 64 323-401 343-406 (553)
94 TIGR02521 type_IV_pilW type IV 96.7 0.0051 1.1E-07 54.9 7.5 68 317-399 30-97 (234)
95 KOG4626 O-linked N-acetylgluco 96.7 0.0024 5.3E-08 64.6 5.6 70 317-401 115-184 (966)
96 PF15015 NYD-SP12_N: Spermatog 96.7 0.0097 2.1E-07 57.7 9.2 79 322-400 180-261 (569)
97 TIGR00990 3a0801s09 mitochondr 96.7 0.0036 7.8E-08 66.0 7.0 81 320-400 401-500 (615)
98 KOG4340 Uncharacterized conser 96.7 0.0018 4E-08 60.1 3.9 64 318-396 144-207 (459)
99 cd00189 TPR Tetratricopeptide 96.6 0.0043 9.3E-08 46.1 5.0 65 320-399 36-100 (100)
100 PRK10370 formate-dependent nit 96.5 0.0064 1.4E-07 54.4 6.6 69 325-401 73-144 (198)
101 smart00028 TPR Tetratricopepti 96.5 0.0041 8.8E-08 36.5 3.8 33 368-400 2-34 (34)
102 PF03704 BTAD: Bacterial trans 96.4 0.032 6.9E-07 47.0 9.9 84 318-401 6-96 (146)
103 PF14938 SNAP: Soluble NSF att 96.4 0.02 4.3E-07 54.2 9.2 72 316-396 112-184 (282)
104 COG5010 TadD Flp pilus assembl 96.3 0.0072 1.6E-07 55.2 5.6 68 320-402 102-169 (257)
105 KOG4648 Uncharacterized conser 96.3 0.0093 2E-07 56.5 6.4 68 321-397 94-161 (536)
106 PF13174 TPR_6: Tetratricopept 96.3 0.0054 1.2E-07 37.2 3.2 32 369-400 2-33 (33)
107 PRK15331 chaperone protein Sic 96.2 0.019 4.2E-07 49.1 7.4 70 317-401 36-105 (165)
108 PRK10803 tol-pal system protei 96.2 0.02 4.4E-07 53.5 8.1 69 321-401 183-251 (263)
109 KOG4814 Uncharacterized conser 96.2 0.014 3.1E-07 59.3 7.4 73 319-400 355-427 (872)
110 KOG1173 Anaphase-promoting com 96.2 0.0077 1.7E-07 60.4 5.5 67 319-400 456-522 (611)
111 PF13414 TPR_11: TPR repeat; P 96.2 0.0045 9.8E-08 44.8 3.0 35 367-401 3-37 (69)
112 TIGR02521 type_IV_pilW type IV 96.1 0.017 3.6E-07 51.5 7.1 65 323-400 104-168 (234)
113 PF13431 TPR_17: Tetratricopep 96.0 0.0033 7.2E-08 39.0 1.3 34 340-388 1-34 (34)
114 PF13428 TPR_14: Tetratricopep 96.0 0.011 2.3E-07 39.0 3.9 34 369-402 3-36 (44)
115 PF12968 DUF3856: Domain of Un 96.0 0.063 1.4E-06 43.3 8.7 74 320-396 11-84 (144)
116 CHL00033 ycf3 photosystem I as 95.9 0.027 5.9E-07 48.7 7.2 74 319-400 73-153 (168)
117 KOG0624 dsRNA-activated protei 95.8 0.0054 1.2E-07 58.1 2.4 88 314-401 265-375 (504)
118 PRK11447 cellulose synthase su 95.8 0.015 3.2E-07 65.9 6.3 65 322-401 355-419 (1157)
119 PRK09782 bacteriophage N4 rece 95.7 0.02 4.3E-07 63.3 6.7 24 324-347 582-605 (987)
120 KOG4151 Myosin assembly protei 95.6 0.01 2.3E-07 61.7 3.7 79 310-399 45-125 (748)
121 KOG1840 Kinesin light chain [C 95.6 0.05 1.1E-06 55.4 8.5 75 316-397 323-397 (508)
122 KOG2076 RNA polymerase III tra 95.5 0.039 8.4E-07 58.3 7.4 74 316-403 412-485 (895)
123 KOG1173 Anaphase-promoting com 95.5 0.023 5E-07 57.1 5.4 75 320-402 416-490 (611)
124 PRK11447 cellulose synthase su 95.4 0.029 6.3E-07 63.7 6.8 67 320-401 463-529 (1157)
125 PF13374 TPR_10: Tetratricopep 95.4 0.028 6.1E-07 35.9 4.0 31 367-397 2-32 (42)
126 PRK15179 Vi polysaccharide bio 95.4 0.031 6.7E-07 59.4 6.3 67 320-401 122-188 (694)
127 PF13424 TPR_12: Tetratricopep 95.3 0.03 6.4E-07 41.6 4.5 33 364-396 2-34 (78)
128 PRK15174 Vi polysaccharide exp 95.3 0.039 8.4E-07 58.7 6.9 27 321-347 287-313 (656)
129 KOG1130 Predicted G-alpha GTPa 95.3 0.019 4.2E-07 55.6 4.1 74 314-396 191-264 (639)
130 COG4105 ComL DNA uptake lipopr 95.2 0.072 1.6E-06 48.9 7.5 73 318-402 34-106 (254)
131 TIGR02917 PEP_TPR_lipo putativ 95.2 0.038 8.3E-07 59.8 6.7 69 318-401 22-90 (899)
132 TIGR03302 OM_YfiO outer membra 95.2 0.057 1.2E-06 49.3 6.8 69 321-401 73-149 (235)
133 KOG1128 Uncharacterized conser 95.1 0.033 7.1E-07 57.7 5.1 65 322-401 489-553 (777)
134 PF09976 TPR_21: Tetratricopep 95.0 0.095 2.1E-06 44.1 7.3 60 321-392 51-110 (145)
135 PF13429 TPR_15: Tetratricopep 95.0 0.075 1.6E-06 50.0 7.2 82 320-401 148-248 (280)
136 PRK10803 tol-pal system protei 94.9 0.1 2.2E-06 48.8 7.8 67 323-401 147-214 (263)
137 PRK11788 tetratricopeptide rep 94.9 0.078 1.7E-06 52.1 7.4 31 369-399 251-281 (389)
138 PRK15174 Vi polysaccharide exp 94.9 0.049 1.1E-06 57.9 6.2 62 324-400 252-317 (656)
139 PRK11788 tetratricopeptide rep 94.9 0.08 1.7E-06 52.0 7.4 82 320-401 109-214 (389)
140 PRK15179 Vi polysaccharide bio 94.7 0.063 1.4E-06 57.1 6.5 70 318-402 86-155 (694)
141 PRK12370 invasion protein regu 94.7 0.035 7.5E-07 57.8 4.4 58 330-402 316-373 (553)
142 PLN02789 farnesyltranstransfer 94.6 0.064 1.4E-06 51.7 5.6 58 328-400 47-105 (320)
143 KOG2002 TPR-containing nuclear 94.5 0.051 1.1E-06 57.9 5.2 68 320-401 166-233 (1018)
144 PF07719 TPR_2: Tetratricopept 94.5 0.085 1.8E-06 32.0 4.3 29 319-347 2-30 (34)
145 PF12862 Apc5: Anaphase-promot 94.5 0.21 4.6E-06 38.7 7.5 67 328-400 8-74 (94)
146 PF06552 TOM20_plant: Plant sp 94.5 0.071 1.5E-06 46.3 5.0 55 332-401 49-114 (186)
147 PRK10049 pgaA outer membrane p 94.4 0.085 1.8E-06 57.2 6.7 27 321-347 52-78 (765)
148 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.4 8.6E-06 35.7 8.1 68 317-396 5-72 (80)
149 PF12688 TPR_5: Tetratrico pep 94.3 0.25 5.4E-06 40.3 7.7 66 322-399 5-70 (120)
150 PF00515 TPR_1: Tetratricopept 94.3 0.1 2.3E-06 31.8 4.3 29 319-347 2-30 (34)
151 TIGR02917 PEP_TPR_lipo putativ 94.2 0.093 2E-06 56.8 6.7 84 317-400 124-226 (899)
152 PF13176 TPR_7: Tetratricopept 94.0 0.1 2.3E-06 32.5 3.9 27 321-347 2-28 (36)
153 PF10602 RPN7: 26S proteasome 94.0 0.34 7.4E-06 42.4 8.6 68 317-396 35-102 (177)
154 KOG0547 Translocase of outer m 94.0 0.12 2.5E-06 51.5 6.0 86 316-401 324-428 (606)
155 KOG1125 TPR repeat-containing 93.9 0.074 1.6E-06 53.7 4.5 53 339-399 444-496 (579)
156 KOG0551 Hsp90 co-chaperone CNS 93.8 0.087 1.9E-06 49.9 4.6 62 322-398 123-184 (390)
157 KOG2796 Uncharacterized conser 93.7 0.065 1.4E-06 49.3 3.5 66 321-401 255-320 (366)
158 COG4783 Putative Zn-dependent 93.7 0.12 2.6E-06 51.3 5.6 64 324-402 346-409 (484)
159 PRK10049 pgaA outer membrane p 93.6 0.12 2.7E-06 56.0 6.0 35 368-402 428-462 (765)
160 PF10952 DUF2753: Protein of u 93.5 0.7 1.5E-05 37.5 8.6 78 321-398 4-85 (140)
161 KOG1126 DNA-binding cell divis 93.4 0.053 1.2E-06 55.5 2.7 81 321-401 424-523 (638)
162 cd05804 StaR_like StaR_like; a 93.4 0.13 2.9E-06 49.9 5.5 25 323-347 119-143 (355)
163 PLN02789 farnesyltranstransfer 93.3 0.18 3.9E-06 48.6 6.1 39 363-401 138-176 (320)
164 PRK10153 DNA-binding transcrip 93.2 0.25 5.4E-06 50.9 7.2 62 324-401 426-487 (517)
165 cd02677 MIT_SNX15 MIT: domain 93.1 0.54 1.2E-05 34.9 7.1 60 315-374 3-63 (75)
166 KOG2003 TPR repeat-containing 93.1 0.12 2.5E-06 50.9 4.3 81 320-400 492-591 (840)
167 PF09295 ChAPs: ChAPs (Chs5p-A 93.1 0.27 5.8E-06 48.7 7.0 61 318-393 234-294 (395)
168 PF08631 SPO22: Meiosis protei 93.0 0.45 9.7E-06 44.9 8.2 87 308-396 25-112 (278)
169 COG1729 Uncharacterized protei 92.8 0.35 7.6E-06 44.8 6.8 65 325-401 185-249 (262)
170 KOG1126 DNA-binding cell divis 92.7 0.11 2.5E-06 53.2 3.9 39 363-401 519-557 (638)
171 cd02682 MIT_AAA_Arch MIT: doma 92.6 0.94 2E-05 33.5 7.6 64 316-379 4-68 (75)
172 cd02683 MIT_1 MIT: domain cont 92.6 0.57 1.2E-05 35.0 6.6 59 317-375 5-64 (77)
173 cd02684 MIT_2 MIT: domain cont 92.6 0.62 1.3E-05 34.6 6.7 60 315-374 3-63 (75)
174 PF14938 SNAP: Soluble NSF att 92.4 0.69 1.5E-05 43.7 8.7 72 315-396 32-103 (282)
175 PLN03098 LPA1 LOW PSII ACCUMUL 92.4 0.14 3E-06 50.9 3.9 39 363-401 71-109 (453)
176 KOG3364 Membrane protein invol 92.4 0.16 3.4E-06 42.0 3.5 33 369-401 73-105 (149)
177 PF11817 Foie-gras_1: Foie gra 92.2 0.66 1.4E-05 42.9 8.1 65 322-395 182-246 (247)
178 cd02681 MIT_calpain7_1 MIT: do 92.2 0.83 1.8E-05 34.0 6.9 60 316-375 4-65 (76)
179 PRK14574 hmsH outer membrane p 91.7 0.34 7.3E-06 52.7 6.2 86 317-402 33-137 (822)
180 PF04212 MIT: MIT (microtubule 91.7 0.71 1.5E-05 33.5 6.1 35 316-350 3-37 (69)
181 KOG2002 TPR-containing nuclear 91.6 0.57 1.2E-05 50.3 7.5 68 321-400 273-340 (1018)
182 PF06957 COPI_C: Coatomer (COP 91.6 0.91 2E-05 45.1 8.5 87 314-400 200-333 (422)
183 PF13432 TPR_16: Tetratricopep 90.9 0.2 4.4E-06 35.5 2.6 31 371-401 1-31 (65)
184 cd05804 StaR_like StaR_like; a 90.8 0.73 1.6E-05 44.6 7.1 67 321-398 151-217 (355)
185 PRK15331 chaperone protein Sic 90.6 0.91 2E-05 39.0 6.6 57 324-395 77-133 (165)
186 cd02678 MIT_VPS4 MIT: domain c 90.3 1.6 3.4E-05 32.3 7.0 60 315-374 3-63 (75)
187 KOG1155 Anaphase-promoting com 90.2 0.44 9.4E-06 47.3 4.8 61 325-400 337-397 (559)
188 cd02656 MIT MIT: domain contai 90.1 2 4.3E-05 31.7 7.4 60 315-374 3-63 (75)
189 PF13429 TPR_15: Tetratricopep 89.9 0.63 1.4E-05 43.7 5.6 66 323-401 115-180 (280)
190 PF13374 TPR_10: Tetratricopep 89.6 0.8 1.7E-05 28.8 4.4 33 318-350 2-34 (42)
191 PRK14574 hmsH outer membrane p 89.1 0.76 1.6E-05 50.0 6.1 65 321-400 105-169 (822)
192 KOG1129 TPR repeat-containing 89.1 0.52 1.1E-05 44.8 4.2 60 323-397 329-388 (478)
193 PF13181 TPR_8: Tetratricopept 88.9 0.98 2.1E-05 27.2 4.2 29 319-347 2-30 (34)
194 KOG2076 RNA polymerase III tra 88.8 1.3 2.9E-05 47.2 7.3 82 317-401 138-241 (895)
195 PF04733 Coatomer_E: Coatomer 88.7 0.29 6.4E-06 46.5 2.4 55 333-402 182-236 (290)
196 COG4785 NlpI Lipoprotein NlpI, 88.3 0.97 2.1E-05 40.6 5.2 69 318-401 65-133 (297)
197 KOG3785 Uncharacterized conser 88.2 1.6 3.5E-05 42.0 6.9 65 319-398 152-216 (557)
198 COG3947 Response regulator con 88.2 1.9 4.1E-05 40.5 7.2 51 351-401 263-313 (361)
199 PF03704 BTAD: Bacterial trans 87.9 2.6 5.5E-05 35.2 7.5 73 306-393 48-122 (146)
200 PF13428 TPR_14: Tetratricopep 87.7 0.8 1.7E-05 29.8 3.4 27 321-347 4-30 (44)
201 COG4235 Cytochrome c biogenesi 87.3 2.1 4.6E-05 40.2 7.1 81 321-401 159-261 (287)
202 KOG2376 Signal recognition par 87.1 3 6.5E-05 42.7 8.4 83 320-402 177-259 (652)
203 PF00244 14-3-3: 14-3-3 protei 86.9 1.7 3.6E-05 40.0 6.2 55 334-395 142-197 (236)
204 COG4976 Predicted methyltransf 86.8 1.1 2.5E-05 40.5 4.8 62 326-402 3-64 (287)
205 KOG2376 Signal recognition par 86.7 3.2 6.8E-05 42.6 8.3 70 321-394 113-202 (652)
206 PF12968 DUF3856: Domain of Un 86.7 4.3 9.3E-05 33.0 7.4 68 325-396 62-129 (144)
207 KOG3060 Uncharacterized conser 86.6 1.6 3.6E-05 40.1 5.7 66 320-400 156-224 (289)
208 smart00745 MIT Microtubule Int 86.4 6.4 0.00014 29.0 8.1 36 315-350 5-40 (77)
209 COG4700 Uncharacterized protei 85.9 3.5 7.7E-05 36.3 7.1 65 321-399 92-156 (251)
210 PRK14720 transcript cleavage f 85.6 1.6 3.5E-05 47.6 6.1 51 329-395 127-177 (906)
211 cd02680 MIT_calpain7_2 MIT: do 85.6 5 0.00011 29.7 6.9 35 316-350 4-38 (75)
212 KOG1174 Anaphase-promoting com 85.5 2.5 5.5E-05 41.5 6.7 68 320-402 336-403 (564)
213 KOG3824 Huntingtin interacting 85.1 1.6 3.5E-05 41.2 5.0 75 311-401 110-184 (472)
214 PF13371 TPR_9: Tetratricopept 85.1 0.89 1.9E-05 32.8 2.8 29 373-401 1-29 (73)
215 COG1729 Uncharacterized protei 85.0 4.7 0.0001 37.5 8.0 70 321-402 144-213 (262)
216 KOG1174 Anaphase-promoting com 84.8 2.8 6E-05 41.3 6.6 61 325-401 445-505 (564)
217 PF13525 YfiO: Outer membrane 84.7 4.1 8.9E-05 36.3 7.5 69 321-401 45-124 (203)
218 PF13512 TPR_18: Tetratricopep 84.6 5.4 0.00012 33.5 7.5 67 323-401 52-133 (142)
219 PF09976 TPR_21: Tetratricopep 84.4 9.8 0.00021 31.7 9.3 74 314-399 7-80 (145)
220 KOG0376 Serine-threonine phosp 84.0 0.89 1.9E-05 45.3 3.0 64 323-401 43-106 (476)
221 cd02679 MIT_spastin MIT: domai 83.8 12 0.00026 28.1 8.3 63 318-380 8-76 (79)
222 KOG0686 COP9 signalosome, subu 83.5 3.4 7.3E-05 40.5 6.6 64 321-396 153-216 (466)
223 COG5010 TadD Flp pilus assembl 83.2 3.6 7.9E-05 37.9 6.4 61 321-396 137-197 (257)
224 KOG3785 Uncharacterized conser 83.2 1.7 3.6E-05 41.9 4.3 54 325-393 64-117 (557)
225 KOG0292 Vesicle coat complex C 83.0 7 0.00015 42.0 9.0 86 314-399 987-1116(1202)
226 PF12569 NARP1: NMDA receptor- 82.9 3.4 7.3E-05 42.6 6.8 58 329-401 15-72 (517)
227 PF10300 DUF3808: Protein of u 82.6 4.4 9.5E-05 41.3 7.5 64 323-397 272-335 (468)
228 PRK10866 outer membrane biogen 82.3 5.7 0.00012 36.7 7.6 68 321-400 72-157 (243)
229 PF12688 TPR_5: Tetratrico pep 82.2 9.3 0.0002 31.1 7.9 65 319-395 39-103 (120)
230 TIGR00540 hemY_coli hemY prote 82.0 3.1 6.8E-05 41.5 6.2 83 319-401 264-371 (409)
231 KOG1130 Predicted G-alpha GTPa 81.8 7.2 0.00016 38.5 8.1 67 321-396 278-344 (639)
232 KOG1156 N-terminal acetyltrans 81.6 1.5 3.2E-05 45.3 3.6 57 329-400 86-142 (700)
233 PF14559 TPR_19: Tetratricopep 81.6 0.59 1.3E-05 33.2 0.6 26 377-402 1-26 (68)
234 KOG1128 Uncharacterized conser 81.0 2 4.3E-05 45.1 4.2 64 322-400 523-586 (777)
235 smart00028 TPR Tetratricopepti 80.8 1.9 4E-05 24.3 2.6 27 321-347 4-30 (34)
236 COG2956 Predicted N-acetylgluc 80.7 6.5 0.00014 37.6 7.2 90 308-401 100-214 (389)
237 PF07721 TPR_4: Tetratricopept 80.3 2.4 5.1E-05 24.2 2.8 23 369-391 3-25 (26)
238 TIGR03504 FimV_Cterm FimV C-te 78.9 3.4 7.4E-05 27.2 3.5 26 370-395 2-27 (44)
239 PRK14720 transcript cleavage f 78.9 4.1 8.8E-05 44.6 6.0 63 324-402 88-151 (906)
240 smart00101 14_3_3 14-3-3 homol 78.6 7.6 0.00016 35.9 6.9 55 334-395 144-199 (244)
241 KOG1155 Anaphase-promoting com 77.6 5.2 0.00011 40.0 5.8 78 322-399 368-464 (559)
242 KOG1586 Protein required for f 77.5 13 0.00029 34.0 7.8 72 316-396 110-183 (288)
243 KOG0739 AAA+-type ATPase [Post 76.5 8.3 0.00018 36.6 6.5 37 313-349 5-41 (439)
244 KOG4162 Predicted calmodulin-b 76.3 4.1 9E-05 43.0 5.0 82 319-401 685-788 (799)
245 PRK10747 putative protoheme IX 76.2 12 0.00026 37.2 8.2 88 314-401 80-187 (398)
246 PF10516 SHNi-TPR: SHNi-TPR; 75.4 5.4 0.00012 25.3 3.5 29 369-397 3-31 (38)
247 PRK10941 hypothetical protein; 73.4 5.6 0.00012 37.3 4.7 39 363-401 177-215 (269)
248 PF13174 TPR_6: Tetratricopept 73.2 6.1 0.00013 23.1 3.4 27 321-347 3-29 (33)
249 KOG2114 Vacuolar assembly/sort 72.9 9.4 0.0002 40.9 6.6 33 318-350 368-400 (933)
250 COG0457 NrfG FOG: TPR repeat [ 72.1 17 0.00037 30.7 7.4 33 367-399 202-234 (291)
251 TIGR00540 hemY_coli hemY prote 70.9 15 0.00033 36.5 7.6 89 314-402 80-188 (409)
252 PRK10747 putative protoheme IX 70.3 13 0.00028 36.9 6.9 61 321-397 331-391 (398)
253 KOG1129 TPR repeat-containing 70.3 8.9 0.00019 36.8 5.2 77 324-400 229-323 (478)
254 PRK04841 transcriptional regul 69.6 21 0.00047 39.3 9.1 63 325-396 498-560 (903)
255 KOG2610 Uncharacterized conser 68.9 16 0.00035 35.2 6.6 82 319-400 104-208 (491)
256 KOG1941 Acetylcholine receptor 66.9 31 0.00068 33.6 8.1 81 317-397 5-113 (518)
257 PF10516 SHNi-TPR: SHNi-TPR; 66.2 9.5 0.00021 24.2 3.2 27 323-349 6-32 (38)
258 COG2956 Predicted N-acetylgluc 65.8 18 0.0004 34.6 6.3 65 323-401 219-283 (389)
259 PF12569 NARP1: NMDA receptor- 64.5 13 0.00029 38.3 5.7 62 325-401 201-262 (517)
260 PF08631 SPO22: Meiosis protei 63.8 21 0.00047 33.5 6.6 61 329-396 4-65 (278)
261 PF09295 ChAPs: ChAPs (Chs5p-A 61.8 18 0.00038 36.0 5.8 61 325-400 207-267 (395)
262 PF06552 TOM20_plant: Plant sp 61.7 18 0.00038 31.7 5.0 52 334-400 7-68 (186)
263 PRK04841 transcriptional regul 61.6 30 0.00066 38.1 8.3 67 323-396 536-602 (903)
264 PF08969 USP8_dimer: USP8 dime 61.2 24 0.00053 28.3 5.6 44 307-350 27-70 (115)
265 KOG4642 Chaperone-dependent E3 59.3 23 0.0005 32.5 5.5 60 322-396 48-107 (284)
266 KOG3081 Vesicle coat complex C 58.2 13 0.00028 34.7 3.8 34 368-401 208-241 (299)
267 PRK11906 transcriptional regul 57.4 29 0.00063 34.9 6.4 64 323-401 343-406 (458)
268 KOG1127 TPR repeat-containing 56.7 22 0.00047 39.1 5.6 66 321-401 5-71 (1238)
269 PF04184 ST7: ST7 protein; In 56.1 24 0.00052 35.8 5.6 92 308-399 181-291 (539)
270 KOG0276 Vesicle coat complex C 55.8 40 0.00087 35.1 7.1 75 318-392 666-746 (794)
271 PF07720 TPR_3: Tetratricopept 55.0 21 0.00046 22.2 3.3 30 371-400 5-36 (36)
272 COG4783 Putative Zn-dependent 54.7 30 0.00064 34.9 5.9 34 367-400 340-373 (484)
273 KOG1941 Acetylcholine receptor 54.3 31 0.00066 33.7 5.7 67 325-396 169-235 (518)
274 PF04781 DUF627: Protein of un 54.2 61 0.0013 26.0 6.6 24 324-347 2-25 (111)
275 PF15469 Sec5: Exocyst complex 53.7 55 0.0012 28.5 7.1 74 323-399 91-171 (182)
276 PF10255 Paf67: RNA polymerase 53.4 15 0.00032 36.6 3.6 55 341-395 138-192 (404)
277 COG2976 Uncharacterized protei 53.3 48 0.001 29.5 6.4 60 320-391 91-150 (207)
278 PRK10153 DNA-binding transcrip 52.5 1.2E+02 0.0025 31.5 10.2 78 322-399 343-452 (517)
279 PRK10941 hypothetical protein; 52.3 49 0.0011 31.1 6.7 65 323-402 186-250 (269)
280 KOG0985 Vesicle coat protein c 51.9 26 0.00057 38.7 5.3 15 234-248 321-335 (1666)
281 KOG3060 Uncharacterized conser 51.6 93 0.002 29.0 8.1 32 369-400 156-187 (289)
282 PF04733 Coatomer_E: Coatomer 49.9 25 0.00054 33.4 4.5 65 320-399 203-268 (290)
283 PF01535 PPR: PPR repeat; Int 49.4 27 0.00058 19.8 3.1 28 369-396 2-29 (31)
284 COG0457 NrfG FOG: TPR repeat [ 49.1 81 0.0018 26.3 7.5 23 376-398 139-161 (291)
285 COG4235 Cytochrome c biogenesi 46.0 15 0.00032 34.7 2.2 33 370-402 159-191 (287)
286 KOG4507 Uncharacterized conser 46.0 45 0.00098 34.6 5.7 66 321-401 645-710 (886)
287 PF07720 TPR_3: Tetratricopept 45.8 54 0.0012 20.4 4.1 28 320-347 3-32 (36)
288 PF14561 TPR_20: Tetratricopep 45.5 59 0.0013 24.8 5.2 35 367-401 22-56 (90)
289 PF11207 DUF2989: Protein of u 45.3 57 0.0012 29.1 5.7 50 327-387 149-198 (203)
290 PF12063 DUF3543: Domain of un 45.1 57 0.0012 30.0 5.9 55 325-380 174-237 (238)
291 KOG1585 Protein required for f 44.9 1.1E+02 0.0023 28.5 7.4 28 323-350 115-142 (308)
292 PF04010 DUF357: Protein of un 44.3 72 0.0016 23.6 5.2 41 310-350 27-67 (75)
293 PRK11906 transcriptional regul 43.9 31 0.00066 34.8 4.2 39 363-401 291-338 (458)
294 PF14853 Fis1_TPR_C: Fis1 C-te 43.9 83 0.0018 21.5 5.1 24 324-347 7-30 (53)
295 KOG4162 Predicted calmodulin-b 43.4 49 0.0011 35.4 5.7 25 323-347 759-783 (799)
296 PF04184 ST7: ST7 protein; In 42.5 72 0.0016 32.5 6.5 55 322-389 263-317 (539)
297 PF04781 DUF627: Protein of un 42.4 53 0.0012 26.3 4.6 57 326-397 52-108 (111)
298 PF13812 PPR_3: Pentatricopept 42.2 54 0.0012 19.0 3.8 27 369-395 3-29 (34)
299 PF08424 NRDE-2: NRDE-2, neces 41.2 1.1E+02 0.0024 29.4 7.5 69 329-397 113-184 (321)
300 KOG1127 TPR repeat-containing 40.6 27 0.00059 38.4 3.4 63 323-400 567-629 (1238)
301 PF09670 Cas_Cas02710: CRISPR- 38.6 1.6E+02 0.0035 29.1 8.4 67 317-396 130-198 (379)
302 PF10938 YfdX: YfdX protein; 38.5 64 0.0014 27.5 4.9 72 317-395 74-145 (155)
303 PF09986 DUF2225: Uncharacteri 37.7 1.4E+02 0.0031 26.8 7.3 68 321-397 128-195 (214)
304 KOG1156 N-terminal acetyltrans 37.0 40 0.00087 35.3 3.9 33 369-401 77-109 (700)
305 COG3947 Response regulator con 36.7 1.8E+02 0.0039 27.7 7.7 75 303-392 262-338 (361)
306 TIGR00756 PPR pentatricopeptid 34.4 82 0.0018 18.0 3.7 28 369-396 2-29 (35)
307 PF04910 Tcf25: Transcriptiona 33.0 1.6E+02 0.0035 28.9 7.3 81 319-400 41-136 (360)
308 PF04053 Coatomer_WDAD: Coatom 32.8 1.4E+02 0.0031 30.2 7.1 73 319-392 348-427 (443)
309 KOG1585 Protein required for f 32.6 2.8E+02 0.0061 25.8 8.1 30 323-352 35-65 (308)
310 PF01346 FKBP_N: Domain amino 32.5 29 0.00064 28.0 1.8 22 31-52 103-124 (124)
311 KOG1586 Protein required for f 32.5 1.7E+02 0.0036 27.1 6.6 26 325-350 80-105 (288)
312 KOG4563 Cell cycle-regulated h 32.3 1.5E+02 0.0033 29.0 6.6 40 313-352 36-75 (400)
313 COG4785 NlpI Lipoprotein NlpI, 32.1 36 0.00078 30.9 2.3 70 317-401 98-167 (297)
314 COG2912 Uncharacterized conser 31.4 85 0.0018 29.4 4.7 39 363-401 177-215 (269)
315 PF06069 PerC: PerC transcript 30.6 2.5E+02 0.0054 21.6 7.2 45 325-381 7-51 (90)
316 KOG1915 Cell cycle control pro 29.8 1.7E+02 0.0036 29.9 6.7 62 328-401 217-278 (677)
317 KOG2471 TPR repeat-containing 29.1 1.1E+02 0.0024 31.2 5.3 39 359-397 501-539 (696)
318 KOG1308 Hsp70-interacting prot 28.7 31 0.00067 33.4 1.4 66 318-398 148-213 (377)
319 PRK12450 foldase protein PrsA; 28.6 1.2E+02 0.0025 29.1 5.4 30 237-266 193-222 (309)
320 cd09243 BRO1_Brox_like Protein 28.3 2.7E+02 0.0058 27.3 7.9 67 329-395 205-276 (353)
321 PF11817 Foie-gras_1: Foie gra 27.8 2E+02 0.0043 26.4 6.7 51 336-395 156-206 (247)
322 KOG3617 WD40 and TPR repeat-co 27.6 4.3E+02 0.0094 29.1 9.4 73 321-393 1082-1171(1416)
323 cd02679 MIT_spastin MIT: domai 26.5 1.4E+02 0.003 22.3 4.3 24 371-394 12-35 (79)
324 TIGR02710 CRISPR-associated pr 26.4 2.7E+02 0.0058 27.6 7.4 63 320-392 132-196 (380)
325 KOG2396 HAT (Half-A-TPR) repea 26.0 1.8E+02 0.0038 29.9 6.1 51 338-403 91-141 (568)
326 KOG2796 Uncharacterized conser 25.7 1.8E+02 0.004 27.3 5.7 81 321-401 180-286 (366)
327 PF13838 Clathrin_H_link: Clat 25.7 54 0.0012 23.6 1.9 21 321-341 9-29 (66)
328 KOG0546 HSP90 co-chaperone CPR 25.4 21 0.00045 34.6 -0.4 39 363-401 305-343 (372)
329 PF02064 MAS20: MAS20 protein 25.1 1.4E+02 0.003 24.4 4.4 38 311-348 56-93 (121)
330 PF05688 DUF824: Salmonella re 24.9 1.4E+02 0.003 20.0 3.6 35 60-99 7-41 (47)
331 PF09122 DUF1930: Domain of un 24.3 1.1E+02 0.0024 21.7 3.1 24 247-270 34-57 (68)
332 KOG2300 Uncharacterized conser 24.1 2.4E+02 0.0053 28.9 6.6 43 329-383 378-420 (629)
333 PF07219 HemY_N: HemY protein 23.8 2.6E+02 0.0056 22.0 5.8 34 314-347 55-88 (108)
334 cd00280 TRFH Telomeric Repeat 23.7 1.6E+02 0.0036 26.0 4.8 33 369-402 113-145 (200)
335 PF10475 DUF2450: Protein of u 23.7 4.7E+02 0.01 24.6 8.6 36 315-350 124-159 (291)
336 COG0751 GlyS Glycyl-tRNA synth 23.5 2.4E+02 0.0052 30.1 6.8 71 315-385 616-688 (691)
337 KOG1310 WD40 repeat protein [G 23.3 99 0.0021 31.9 3.8 39 363-401 441-479 (758)
338 COG3118 Thioredoxin domain-con 23.2 1.4E+02 0.0031 28.3 4.7 118 245-388 60-189 (304)
339 PF04505 Dispanin: Interferon- 23.2 98 0.0021 23.2 3.0 26 322-347 41-66 (82)
340 KOG1915 Cell cycle control pro 23.2 1.1E+02 0.0024 31.2 4.1 55 329-398 84-138 (677)
341 cd09241 BRO1_ScRim20-like Prot 22.9 4.1E+02 0.0088 25.9 8.2 65 330-395 196-265 (355)
342 PLN03218 maturation of RBCL 1; 22.6 3.4E+02 0.0073 31.0 8.3 28 368-395 720-747 (1060)
343 cd02682 MIT_AAA_Arch MIT: doma 22.4 1.9E+02 0.0042 21.3 4.3 28 368-395 7-34 (75)
344 COG5159 RPN6 26S proteasome re 21.6 1.3E+02 0.0029 28.5 4.1 65 322-393 7-74 (421)
345 PF05053 Menin: Menin; InterP 21.3 2E+02 0.0043 29.9 5.6 30 323-352 323-352 (618)
346 KOG4340 Uncharacterized conser 20.9 1.5E+02 0.0033 28.3 4.4 31 368-398 45-75 (459)
347 PLN03218 maturation of RBCL 1; 20.8 2.6E+02 0.0055 31.9 6.9 28 368-395 615-642 (1060)
348 PHA02122 hypothetical protein 20.8 1.6E+02 0.0036 20.2 3.3 19 63-82 39-57 (65)
349 PF04212 MIT: MIT (microtubule 20.7 2E+02 0.0044 20.3 4.2 25 371-395 9-33 (69)
350 smart00386 HAT HAT (Half-A-TPR 20.5 1.1E+02 0.0023 17.2 2.3 18 332-349 1-18 (33)
351 KOG2300 Uncharacterized conser 20.3 6E+02 0.013 26.2 8.5 83 308-399 37-121 (629)
352 PF13041 PPR_2: PPR repeat fam 20.2 2.1E+02 0.0045 18.5 4.0 29 368-396 4-32 (50)
353 cd09242 BRO1_ScBro1_like Prote 20.1 4.4E+02 0.0095 25.6 7.7 63 333-395 201-272 (348)
354 PF09986 DUF2225: Uncharacteri 20.1 4.6E+02 0.0099 23.6 7.3 63 327-397 86-155 (214)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-53 Score=401.73 Aligned_cols=288 Identities=46% Similarity=0.738 Sum_probs=263.9
Q ss_pred EccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCC
Q 015659 54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE 133 (403)
Q Consensus 54 ~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~ 133 (403)
++|+|+++|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.+.++.+|+.++..|+.| +.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g----------------~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKG----------------EA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccccccc----------------cc
Confidence 4789999999999999999999999999999998 799999999999999999999999973 44
Q ss_pred CCC-CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCc-CCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEe
Q 015659 134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL 211 (403)
Q Consensus 134 ~~~-~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g-~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~ 211 (403)
+.+ .+|+++++.|+|+|+ |++++|+|+++|.+ ..+|..+..|.+||...+.
T Consensus 64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~----------------- 116 (397)
T KOG0543|consen 64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE----------------- 116 (397)
T ss_pred CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC-----------------
Confidence 444 799999999999998 88999999999999 7899998888877655554
Q ss_pred eceEEEEeeccceEEeecCCCCCCCeEEEcCC-CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCe
Q 015659 212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK 290 (403)
Q Consensus 212 ~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~-~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~ 290 (403)
++ +|+++ ...+.|.+|+ ..+|.||+.||++|++||++.|+|+|+|+||+.+.+ ++.|||+++
T Consensus 117 ----------~~-~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~ 179 (397)
T KOG0543|consen 117 ----------DG-VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNAT 179 (397)
T ss_pred ----------Cc-ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCce
Confidence 44 56555 3458888888 589999999999999999999999999999965542 689999999
Q ss_pred EEEEEEEeeec-cCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHh
Q 015659 291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (403)
Q Consensus 291 l~f~iel~~i~-~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~ 369 (403)
|.|+|+|++|. +....|.|..+|++..|.+.|+.||.+||.|+|..|...|++|+++|++....++++.+.+..+++.|
T Consensus 180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~ 259 (397)
T KOG0543|consen 180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC 259 (397)
T ss_pred EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 370 WLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 370 ~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
|+|+|+||+|+++|..|+.+|++||+++|.|.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 999999999999999999999999999999963
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=219.53 Aligned_cols=176 Identities=28% Similarity=0.408 Sum_probs=135.1
Q ss_pred EEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccceee---eccCCCcceeeEEe
Q 015659 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITV---VDLSKDGGIVKKIL 170 (403)
Q Consensus 94 ~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~~~---~dv~~d~~v~k~il 170 (403)
|.+|.+.++++++.++.+|+.|+++++ .+||+++||..+.. .-..+++.+.++..... .....+..+...++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~ 75 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL 75 (188)
T ss_pred CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence 357888999999999999999999999 99999999955432 22234666665554322 12223333333333
Q ss_pred ecCC-cCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchH
Q 015659 171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249 (403)
Q Consensus 171 ~~G~-g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~g 249 (403)
.+-. -..+...+|.++ +||+|.+.||++|||| |++++|++|+||.++||+|
T Consensus 76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG 127 (188)
T KOG0549|consen 76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG 127 (188)
T ss_pred ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence 3211 111222333333 6788888999999999 9999999999999999999
Q ss_pred HHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcC
Q 015659 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305 (403)
Q Consensus 250 l~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~ 305 (403)
||++|.+||+||+..++|||++|||+.|. ++.||+++.|+|+|||+++.+.+.
T Consensus 128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~---~~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 128 WDQGLLGMCVGEKRKLIIPPHLGYGERGA---PPKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred HhHHhhhhCcccceEEecCccccCccCCC---CCCCCCCeeEEEEEEEEEeecCCC
Confidence 99999999999999999999999999998 566999999999999999998644
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-28 Score=213.22 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=178.5
Q ss_pred CcceeeEEeecCCcC-CCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659 162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (403)
Q Consensus 162 d~~v~k~il~~G~g~-~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~ 240 (403)
-.++.|+++..|+|. ..-.+|.+|++||....++. .++++|+| ...|.|+.+.
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmeii 62 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEII 62 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEEe
Confidence 357889999999985 23447899999998876653 45678888 6789999999
Q ss_pred cCCCCcchHHHHHHcccCCCcEEEEEEcCCC--------------CCCCc--------------------ccccCCCCCC
Q 015659 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEY--------------GFGNV--------------------EAKRDLATIP 286 (403)
Q Consensus 241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~--------------~yg~~--------------------~~~~~~~~ip 286 (403)
+|...-.|.|+.+|.+|+++|.+.|+|.... +-|.. |.........
T Consensus 63 iGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~k 142 (329)
T KOG0545|consen 63 IGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQK 142 (329)
T ss_pred eccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhh
Confidence 9988889999999999999999999987532 11111 1000000112
Q ss_pred CCCeEEEEEEEeeecc----CcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHHH
Q 015659 287 SCAKLYYEVEMMDFIK----EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQ 359 (403)
Q Consensus 287 ~~~~l~f~iel~~i~~----~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~~ 359 (403)
..++|+|.|+|+.++. ..+.|.|+.+||+..+..++++||.+|+.|+|++|..+|+.|+-+|.. ...+.+++|
T Consensus 143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW 222 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW 222 (329)
T ss_pred CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH
Confidence 2468999999999986 567799999999999999999999999999999999999999999866 556778999
Q ss_pred HHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 360 ~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.++..+...+++|+|+|+|+.++|.+++.+|+++|..+|+|-
T Consensus 223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 999999999999999999999999999999999999999984
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-27 Score=202.23 Aligned_cols=118 Identities=42% Similarity=0.615 Sum_probs=111.0
Q ss_pred cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659 31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII 110 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~ 110 (403)
+...++....+.++++|++|++++.|+| ..|..+|.|.+||++++.||++||||+++++|+.|.|| ++|+||.++|.
T Consensus 86 f~~~~~k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 86 FLEKNAKEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred HHhhhcccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence 4455566677888999999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred CcccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659 111 TMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (403)
Q Consensus 111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~ 153 (403)
+|++|+++++ +|||++|||.+|.+ .||||++|+|+|+|+++
T Consensus 163 ~M~vG~k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 163 GMKVGGKRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred hCCCCceEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999 99999999999966 69999999999999986
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=172.27 Aligned_cols=105 Identities=41% Similarity=0.768 Sum_probs=102.2
Q ss_pred CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCC
Q 015659 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126 (403)
Q Consensus 47 g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~ 126 (403)
|+.++++..|+|...|+.||.|++||++.+.||+.|+||.+++.||.|.+|.+++|.||++++..|.+|+++++ +|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence 68899999999988899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659 127 ELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (403)
Q Consensus 127 ~~ayg~~~~~-~ip~~~~l~~~v~l~~~ 153 (403)
++|||..|.+ .||||++|+|+|||+++
T Consensus 80 d~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 9999999988 99999999999999976
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.6e-26 Score=168.37 Aligned_cols=107 Identities=30% Similarity=0.505 Sum_probs=99.3
Q ss_pred ceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC
Q 015659 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243 (403)
Q Consensus 164 ~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~ 243 (403)
++.+.++..|.+...|..++.|++ ||+|.+.||+.|||| .+++.|+.|.||.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk 53 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK 53 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence 466788999999889999999985 478888899999999 7999999999999
Q ss_pred CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (403)
Q Consensus 244 ~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~ 301 (403)
+.+|.||++++..|.+||++.++|+|+||||..|. +..||||++|+|+|||+++.
T Consensus 54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~---p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH---PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cceeechhhcchhccccccceeeeccccccCCCCC---CCccCCCcEEEEEEEEEecC
Confidence 99999999999999999999999999999999997 78999999999999999874
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=180.99 Aligned_cols=107 Identities=36% Similarity=0.516 Sum_probs=95.7
Q ss_pred CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (403)
Q Consensus 161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~ 240 (403)
-.+++..+++..|.|. .|..++.|++ ||+|+|.||++||+| +++++|+.|.
T Consensus 99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~ 149 (205)
T COG0545 99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP 149 (205)
T ss_pred CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence 3457788888888776 6667777774 588899999999999 9999999999
Q ss_pred cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (403)
Q Consensus 241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~ 301 (403)
|| ++|+||+.+|.+|++|++++++|||++|||..+. +..||||++|+|+|+|+++.
T Consensus 150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~---~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV---PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC---CCCCCCCCeEEEEEEEEecC
Confidence 98 9999999999999999999999999999999997 46699999999999999873
No 8
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.7e-23 Score=172.59 Aligned_cols=110 Identities=36% Similarity=0.608 Sum_probs=99.0
Q ss_pred cCCCeEEEEEEcc-CCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEE
Q 015659 44 GNSGIKKKLLKNG-VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF 122 (403)
Q Consensus 44 ~~~g~~~~vl~~G-~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~ 122 (403)
+...++..++..= ....+.+.||+|.+||++++.||++|+|||++++|++|.||.+++|+||+.+|.+|++||+|++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl-- 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL-- 143 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--
Confidence 3455666666552 1447789999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCC-CCCCCCeEEEEEEecccee
Q 015659 123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT 155 (403)
Q Consensus 123 ~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~ 155 (403)
.|||+++||++|.+ .||++++|.|+|+|+.+..
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence 99999999999977 7999999999999999854
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=7e-23 Score=182.88 Aligned_cols=118 Identities=33% Similarity=0.496 Sum_probs=110.4
Q ss_pred cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659 31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII 110 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~ 110 (403)
+...++..+++..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+| .+++||+++|.
T Consensus 87 fl~~~~k~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~ 163 (206)
T PRK11570 87 FLEENAKKEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALT 163 (206)
T ss_pred HHHHhhhcCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHc
Confidence 4445566778899999999999999999 89999999999999999999999999998899999997 79999999999
Q ss_pred CcccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659 111 TMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (403)
Q Consensus 111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~ 153 (403)
+|++|++++| .|||++|||..+.+ .|||+++++|+|+|+++
T Consensus 164 ~M~~G~k~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 164 LMPVGSKWEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCCCCEEEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999 99999999999987 89999999999999886
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.4e-22 Score=175.72 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=104.1
Q ss_pred eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEeccCCCCCCee-EEeCCCccchhHHHhhcCcccCcEEE
Q 015659 42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV 119 (403)
Q Consensus 42 ~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~ss~~~~~p~~-~~lG~~~~~~gl~~al~~m~~Ge~~~ 119 (403)
.++++||+|+.++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+++|+||+.+|.+|++|++|+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 46799999999999999 999999999999999999 99999999866 8999 99999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccc
Q 015659 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153 (403)
Q Consensus 120 v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~ 153 (403)
| +|||.+|||..+.+.||||++|+|+|+|+.+
T Consensus 194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence 9 9999999999999999999999999999876
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=2.4e-21 Score=168.95 Aligned_cols=112 Identities=30% Similarity=0.437 Sum_probs=103.5
Q ss_pred CceeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCc
Q 015659 39 EERGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE 116 (403)
Q Consensus 39 ~~~~~~~~g~~~~vl~~--G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge 116 (403)
..+..+++|++|++++. |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge 139 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGE 139 (177)
T ss_pred CCceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence 34577899999999976 666 78999999999999999999999999875 699999999999999999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659 117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI 154 (403)
Q Consensus 117 ~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~ 154 (403)
+++| ++||++|||.+|.+ .||++++|+|+|+|+++.
T Consensus 140 ~~~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 140 TATF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999 99999999999976 899999999999999874
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85 E-value=8.7e-21 Score=175.50 Aligned_cols=120 Identities=31% Similarity=0.547 Sum_probs=111.9
Q ss_pred cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659 31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII 110 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~ 110 (403)
+...+...+.+..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ .++|||+++|.
T Consensus 131 fl~~~~k~~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~ 207 (269)
T PRK10902 131 YREKFAKEKGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLK 207 (269)
T ss_pred HHHHhccCCCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHh
Confidence 5556667778889999999999999999 79999999999999999999999999998899999996 79999999999
Q ss_pred CcccCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEecccee
Q 015659 111 TMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT 155 (403)
Q Consensus 111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~~ 155 (403)
+|++|+++.| +||++++||..+.+.||++++++|+|+|+++..
T Consensus 208 ~Mk~Gek~~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 208 NIKKGGKIKL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred cCCCCcEEEE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 9999999999 999999999999889999999999999998853
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.7e-20 Score=174.65 Aligned_cols=274 Identities=22% Similarity=0.287 Sum_probs=183.7
Q ss_pred cccccccccCCCcccccccc--cccc--c-cCCCccCCCceeecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEcCC
Q 015659 6 VMTLEKGANLSDIDGEEEEP--GEVI--E-SAAPLKVGEERGLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDG 79 (403)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~g~~~~vl~~G~G-~~~~~~gd~V~v~y~~~~~~g 79 (403)
.|++.++.|+..|..-...+ .+.. | .++....--++.+.+++|.++|+++|.| ...|..|..|.+||.++..++
T Consensus 39 ~~~lg~g~vi~~~~~gv~tm~~g~~~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~ 118 (397)
T KOG0543|consen 39 KFDLGKGSVIKGWDLGVATMKKGEAGSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG 118 (397)
T ss_pred eeecCCCccccccccccccccccccCCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc
Confidence 47888999999887522211 2221 1 1122222223455699999999999999 678999999999999999777
Q ss_pred cEEeccCCCCCCeeEEeCC-CccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccceee
Q 015659 80 TKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV 156 (403)
Q Consensus 80 ~~~~ss~~~~~p~~~~lG~-~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~~~~ 156 (403)
+|+++. -.|.|.+|. ..++.||+.||..|++||.+.| +|+|+++||+.+.. .|||++++.|+|+|+++...
T Consensus 119 -~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v--~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~ 192 (397)
T KOG0543|consen 119 -VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV--TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELK 192 (397)
T ss_pred -ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE--EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecC
Confidence 777653 457888887 5799999999999999999999 99999999955543 99999999999999998522
Q ss_pred eccCCCcceeeEEeecCCcCCCCCCCCceEEEEE-eeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCC
Q 015659 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQ-VMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ 235 (403)
Q Consensus 157 ~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~-~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~ 235 (403)
.+.+ |.. .....+... .....|+..
T Consensus 193 ~~~s---------------~~~---~~~e~l~~A~~~ke~Gn~~------------------------------------ 218 (397)
T KOG0543|consen 193 EDES---------------WKM---FAEERLEAADRKKERGNVL------------------------------------ 218 (397)
T ss_pred cccc---------------ccc---chHHHHHHHHHHHHhhhHH------------------------------------
Confidence 2211 100 000000000 001111111
Q ss_pred CeEEEcCCC-CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHH
Q 015659 236 PLEFITDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGK 314 (403)
Q Consensus 236 p~~~~lG~~-~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~ 314 (403)
|.-|.- ....-.+.|+.-| .|.. ..++ .+++
T Consensus 219 ---fK~gk~~~A~~~Yerav~~l--------------~~~~------------------------------~~~~-ee~~ 250 (397)
T KOG0543|consen 219 ---FKEGKFKLAKKRYERAVSFL--------------EYRR------------------------------SFDE-EEQK 250 (397)
T ss_pred ---HhhchHHHHHHHHHHHHHHh--------------hccc------------------------------cCCH-HHHH
Confidence 222211 1234445555443 1100 0010 2222
Q ss_pred HHHHHHH---HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659 315 IEAAGRK---KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (403)
Q Consensus 315 ~~~~~~~---k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~ 391 (403)
...+.++ .+.+--+.|.+.|..|+..-.++|.+ ++-+++.++.++.|++-+++|+.|+.+..
T Consensus 251 ~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ 315 (397)
T KOG0543|consen 251 KAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---------------DPNNVKALYRRGQALLALGEYDLARDDFQ 315 (397)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---------------CCCchhHHHHHHHHHHhhccHHHHHHHHH
Confidence 3223322 34455567899999999999999997 55568899999999999999999999999
Q ss_pred HHHhcccccCC
Q 015659 392 KVIVEREAARG 402 (403)
Q Consensus 392 ~aL~~dp~~~~ 402 (403)
+||+++|.|..
T Consensus 316 ka~k~~P~Nka 326 (397)
T KOG0543|consen 316 KALKLEPSNKA 326 (397)
T ss_pred HHHHhCCCcHH
Confidence 99999999963
No 14
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=1e-18 Score=156.10 Aligned_cols=107 Identities=33% Similarity=0.524 Sum_probs=95.4
Q ss_pred CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (403)
Q Consensus 161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~ 240 (403)
...++..+++++|.|. .|..++.|.+| |+|++.||++||+| |.+++|+.|.
T Consensus 100 t~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~ 150 (206)
T PRK11570 100 TESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFP 150 (206)
T ss_pred CCCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEE
Confidence 3457889999999996 68888888865 66677789999999 8889999999
Q ss_pred cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (403)
Q Consensus 241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~ 301 (403)
+| .++|||+.+|.+|++|+++.|+||+++|||+.+. ++.|||+++|+|+|+|++|.
T Consensus 151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~---~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA---GASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCCCCeEEEEEEEEEEC
Confidence 97 7999999999999999999999999999999987 57899999999999999973
No 15
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=1.2e-18 Score=137.29 Aligned_cols=92 Identities=47% Similarity=0.805 Sum_probs=86.7
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC-
Q 015659 58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD- 136 (403)
Q Consensus 58 G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~- 136 (403)
|..+|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++| .|||+++||..+..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence 345799999999999999999999999988889999999999999999999999999999999 99999999999974
Q ss_pred -CCCCCCeEEEEEEec
Q 015659 137 -SLPPNSVVQFEVELV 151 (403)
Q Consensus 137 -~ip~~~~l~~~v~l~ 151 (403)
.||++++++|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 699999999999985
No 16
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.75 E-value=1.5e-17 Score=145.06 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=74.4
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY 293 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f 293 (403)
+||++++.||++|+++ +. ..|+.|.+|.+++++||+.+|.+|++||+++|++|+++|||..+. ...|||+++|+|
T Consensus 94 v~Y~~~~~dG~v~~ss-~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~---~~~Ippns~L~f 168 (177)
T TIGR03516 94 FEYDIRALDGDVIYSE-EE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD---QNKIGPNLPIIS 168 (177)
T ss_pred EEEEEEeCCCCEEEeC-CC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCcCCcEEE
Confidence 3466677788889888 44 459999999999999999999999999999999999999999886 578999999999
Q ss_pred EEEEeeec
Q 015659 294 EVEMMDFI 301 (403)
Q Consensus 294 ~iel~~i~ 301 (403)
+|+|++|.
T Consensus 169 ~IeL~~i~ 176 (177)
T TIGR03516 169 TVTLLNIK 176 (177)
T ss_pred EEEEEEec
Confidence 99999986
No 17
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.75 E-value=5.2e-18 Score=145.19 Aligned_cols=129 Identities=25% Similarity=0.366 Sum_probs=95.7
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S 137 (403)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~ 137 (403)
.++.|+.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++| .|||+.|||.++.. .
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~~v~~ 81 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPDLIQY 81 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence 578999999999999999999999998779999999999999999999999999999999 99999999999855 2
Q ss_pred CCCCCeEEEEEEeccceeeeccC-CCcce-eeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659 138 LPPNSVVQFEVELVSWITVVDLS-KDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (403)
Q Consensus 138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v-~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~ 201 (403)
+|....-.. -+ ..+.....+. .++.. ..+|+.- .++.|++++||+|+|.++.|+
T Consensus 82 vp~~~f~~~-~~-~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~ 137 (156)
T PRK15095 82 FSRRDFMDA-GE-PEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFD 137 (156)
T ss_pred ecHHHCCcc-cC-CCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 221110000 00 1111111111 22322 2233332 567999999999999998874
No 18
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=148.14 Aligned_cols=82 Identities=32% Similarity=0.537 Sum_probs=75.2
Q ss_pred eEEEEeec-cceEEeecCCCCCCCeE-EEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeE
Q 015659 214 VSYIARLE-DGTVFEKKGYDGEQPLE-FITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKL 291 (403)
Q Consensus 214 v~y~g~~~-~g~~fd~s~~~~~~p~~-~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l 291 (403)
++|+|++. +|++||++ ..+.|+. |.+|.+.||+||+.++.+|++|.+.+|+|||.+|||..+. +.|||+++|
T Consensus 143 v~Y~Gkl~~~GkvFd~~--~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~----~~IppnstL 216 (226)
T KOG0552|consen 143 VRYIGKLKGNGKVFDSN--FGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV----PEIPPNSTL 216 (226)
T ss_pred EEEEEEecCCCeEeecc--cCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCc----CcCCCCCcE
Confidence 45777775 89999998 5678999 9999999999999999999999999999999999999997 699999999
Q ss_pred EEEEEEeeec
Q 015659 292 YYEVEMMDFI 301 (403)
Q Consensus 292 ~f~iel~~i~ 301 (403)
+|+|+|+.+.
T Consensus 217 ~fdVEL~~v~ 226 (226)
T KOG0552|consen 217 VFDVELLSVK 226 (226)
T ss_pred EEEEEEEecC
Confidence 9999999873
No 19
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9e-18 Score=142.84 Aligned_cols=129 Identities=29% Similarity=0.424 Sum_probs=96.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S 137 (403)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~ 137 (403)
.+..||.|.+||++++.||++|++|...+.|+.|.+|.++++++|++||.+|.+|++.+| .|||+.|||.+.+. .
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~ 79 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR 79 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence 478999999999999999999999987568999999999999999999999999999999 99999999999865 2
Q ss_pred CCCCCeEEEEEEeccceeeeccC-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659 138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (403)
Q Consensus 138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~ 201 (403)
+|.+..-... + +.+....... +++.+.-+|+.- .++.|+++|||+|++.++.|+
T Consensus 80 vp~~~F~~~~-~-~~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 80 VPRDEFQGVG-E-LEVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ecHHHhCcCC-C-CCCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEE
Confidence 3322111110 0 1111111111 222222223222 567999999999999999885
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.72 E-value=7.9e-17 Score=126.84 Aligned_cols=82 Identities=33% Similarity=0.584 Sum_probs=72.7
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY 293 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f 293 (403)
+||.+++.+|++|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|++|++++||+.+... ..||++++|+|
T Consensus 13 i~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f 89 (94)
T PF00254_consen 13 IHYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVF 89 (94)
T ss_dssp EEEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEE
T ss_pred EEEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEE
Confidence 3455666678889988 77889999999999999999999999999999999999999999988632 45999999999
Q ss_pred EEEEe
Q 015659 294 EVEMM 298 (403)
Q Consensus 294 ~iel~ 298 (403)
+|+|+
T Consensus 90 ~Iell 94 (94)
T PF00254_consen 90 EIELL 94 (94)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99986
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=1.3e-16 Score=147.68 Aligned_cols=108 Identities=30% Similarity=0.519 Sum_probs=95.8
Q ss_pred CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (403)
Q Consensus 161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~ 240 (403)
.+.|+.++++.+|.|. .|..++.|.+| |.|++.||++||++ +.++.|+.|.
T Consensus 144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~ 194 (269)
T PRK10902 144 TSTGLLYKVEKEGTGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR 194 (269)
T ss_pred CCCccEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEeCCCCEeecc-ccCCCceEEe
Confidence 4567899999999996 78888888866 56666788999998 8889999999
Q ss_pred cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccC
Q 015659 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE 303 (403)
Q Consensus 241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~ 303 (403)
++ .++|||+.+|.+|++|+++.|+||++++||..+. ..|||+++|+|+|+|++|...
T Consensus 195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC----CCCCCCCcEEEEEEEEEeccC
Confidence 96 7999999999999999999999999999999875 579999999999999999753
No 22
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.69 E-value=8.7e-17 Score=141.23 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S 137 (403)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~ 137 (403)
+++.+++|+|+|++++.+|++|++|+. +.|+.|++|.++++|+|+++|.+|++|++.+| .|||+.|||++... .
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~ 78 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR 78 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence 467899999999999999999999986 48999999999999999999999999999999 99999999999865 2
Q ss_pred CCCCCeEEEEEEeccceeeeccC-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659 138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (403)
Q Consensus 138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~ 201 (403)
+|.... . .++-+.+....... .++.+..+|+.- ..+.|++++||||++.++.|+
T Consensus 79 vpr~~F-~-~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~ 133 (196)
T PRK10737 79 VPKDVF-M-GVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN 133 (196)
T ss_pred ecHHHC-C-CccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 322110 0 00001111111111 223222233322 567999999999999998885
No 23
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.2e-14 Score=122.59 Aligned_cols=76 Identities=41% Similarity=0.562 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
+..+..+|..||++|++|+|+.|..+|+.||.++.+.+ .+.+..||+|+|+|.+|++.|..||.+|++||
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 78899999999999999999999999999999976644 56788899999999999999999999999999
Q ss_pred hccccc
Q 015659 395 VEREAA 400 (403)
Q Consensus 395 ~~dp~~ 400 (403)
+++|.+
T Consensus 162 el~pty 167 (271)
T KOG4234|consen 162 ELNPTY 167 (271)
T ss_pred hcCchh
Confidence 999965
No 24
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.46 E-value=1.9e-13 Score=117.12 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=58.9
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~ 278 (403)
+||++++.||++||+| +..++|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+...
T Consensus 13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 6788888899999999 677899999999999999999999999999999999999999997643
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.3e-12 Score=122.45 Aligned_cols=79 Identities=29% Similarity=0.450 Sum_probs=72.3
Q ss_pred ccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (403)
Q Consensus 306 ~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ 385 (403)
.-.|..++++..|..+|.+||.+|++|+|.+||+.|++||.++... ..+|+|||+||..+|+|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence 3467889999999999999999999999999999999999984432 4699999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 015659 386 AIELCSKVIVEREA 399 (403)
Q Consensus 386 ai~~~~~aL~~dp~ 399 (403)
++++|++||+++|.
T Consensus 168 Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 168 VIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHHHhhcCcH
Confidence 99999999999996
No 26
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.4e-11 Score=105.06 Aligned_cols=64 Identities=30% Similarity=0.457 Sum_probs=58.1
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~ 278 (403)
++|++++.||++||+| .....|+.|.+|.++++|||+.||.+|.+|++..|.|||+.|||....
T Consensus 11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~ 74 (174)
T COG1047 11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP 74 (174)
T ss_pred EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence 6788888889999998 444789999999999999999999999999999999999999998654
No 27
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=5.8e-12 Score=115.52 Aligned_cols=75 Identities=28% Similarity=0.377 Sum_probs=68.0
Q ss_pred CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (403)
Q Consensus 310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~ 389 (403)
+++|-...|+++|.+||.+.++++|+.|+.+|.+||.+. +....+|.|+|++|++|++|..|+++
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---------------P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD---------------PTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------------CCcchHHHHHHHHHHHhcchHHHHHH
Confidence 344788999999999999999999999999999999983 33467999999999999999999999
Q ss_pred HHHHHhcccc
Q 015659 390 CSKVIVEREA 399 (403)
Q Consensus 390 ~~~aL~~dp~ 399 (403)
|..||.+||.
T Consensus 138 ce~Al~iDp~ 147 (304)
T KOG0553|consen 138 CESALSIDPH 147 (304)
T ss_pred HHHHHhcChH
Confidence 9999999985
No 28
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.23 E-value=3.6e-11 Score=105.85 Aligned_cols=63 Identities=19% Similarity=0.417 Sum_probs=56.3
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~ 278 (403)
++|+.++.+|++||+| ....|+.|.+|.++++|+|+.+|.+|.+|++..|.|||+.|||+...
T Consensus 11 l~Y~l~~~dG~v~dst--~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 11 LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred EEEEEEeCCCCEEEec--CCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 5677777788889988 34789999999999999999999999999999999999999997654
No 29
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.7e-11 Score=112.12 Aligned_cols=74 Identities=30% Similarity=0.408 Sum_probs=68.3
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.|...|+.||++||.++|+.|+.+|+++|+.-..+ ..++..||+|||+|++-+++|.+||.+|.+||.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999974333 5677899999999999999999999999999999
Q ss_pred ccccC
Q 015659 397 REAAR 401 (403)
Q Consensus 397 dp~~~ 401 (403)
+|.+.
T Consensus 149 ~P~h~ 153 (390)
T KOG0551|consen 149 KPTHL 153 (390)
T ss_pred Ccchh
Confidence 99875
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.03 E-value=5.6e-10 Score=117.32 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=86.7
Q ss_pred CCCCCCCeEEEEEEEeeeccCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 015659 283 ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362 (403)
Q Consensus 283 ~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~ 362 (403)
..+|+..++....++..++. ...|.|+.+++...+..+|+.||.+|+.|+|.+|+..|++||.+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------ 159 (615)
T TIGR00990 93 STAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------ 159 (615)
T ss_pred CCCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------------
Confidence 34566666666666665553 56799999999999999999999999999999999999999986321
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..+|+|+|.||+++++|.+|+.+|++||+++|.+.
T Consensus 160 ----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 160 ----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred ----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 13799999999999999999999999999999874
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.9e-10 Score=110.45 Aligned_cols=70 Identities=34% Similarity=0.466 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
+.+...|..||++|+.|+|..|++.|.+||+. .+-...+|+|||+||+|++++..|+.+|+++++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34777889999999999999999999999997 233467999999999999999999999999999
Q ss_pred ccccc
Q 015659 396 EREAA 400 (403)
Q Consensus 396 ~dp~~ 400 (403)
+||.+
T Consensus 421 L~p~~ 425 (539)
T KOG0548|consen 421 LDPNF 425 (539)
T ss_pred cCchH
Confidence 99975
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=7.4e-10 Score=81.44 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=60.2
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVE 396 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~ 396 (403)
+..+...|+.+|+.++|.+|+..|++|+++ .+....++.|||.||++++ +|.+|+.++++||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567788999999999999999999999998 3334669999999999999 799999999999999
Q ss_pred cc
Q 015659 397 RE 398 (403)
Q Consensus 397 dp 398 (403)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 33
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=2.1e-10 Score=106.56 Aligned_cols=90 Identities=23% Similarity=0.307 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC----------------hHHH---HHHHHHHHHhhh
Q 015659 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------------DDEQ---KLVKSLRVSCWL 371 (403)
Q Consensus 311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~----------------~~~~---~~~~~~~~~~~~ 371 (403)
.++.+..+..+|++||++||.|+|.+|+.+|.+++....+.+... +.++ -.++..++++|+
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 456788899999999999999999999999999999754322100 1111 224555566666
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 372 NSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 372 N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.++++...|+...+|.++|+.||+++|.+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 66666666666666666666666666654
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.6e-10 Score=99.11 Aligned_cols=72 Identities=29% Similarity=0.377 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
-..+.++|+.||.+|..++|..|+.+|.+||.+ .+..++.+.|+|.||||+++|..+..+|.+||
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 356889999999999999999999999999997 45557899999999999999999999999999
Q ss_pred hcccccC
Q 015659 395 VEREAAR 401 (403)
Q Consensus 395 ~~dp~~~ 401 (403)
+++|..+
T Consensus 72 ql~~N~v 78 (284)
T KOG4642|consen 72 QLDPNLV 78 (284)
T ss_pred hcChHHH
Confidence 9999653
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.4e-08 Score=95.27 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
........|.+||.+||+|+|..|..+|+.||.+=.. + ...+.+||.|+|++.+++++..+||.+|+.|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n----------~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-N----------KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-c----------cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3567788899999999999999999999999996222 1 4567889999999999999999999999999
Q ss_pred Hhcccc
Q 015659 394 IVEREA 399 (403)
Q Consensus 394 L~~dp~ 399 (403)
|.+||.
T Consensus 314 l~iD~s 319 (486)
T KOG0550|consen 314 LKIDSS 319 (486)
T ss_pred hhcCHH
Confidence 999874
No 36
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.5e-08 Score=96.19 Aligned_cols=93 Identities=24% Similarity=0.416 Sum_probs=79.8
Q ss_pred CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 015659 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN 141 (403)
Q Consensus 62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~ 141 (403)
++.||.|+|+|.++. ||..|.+.. .+.+.|.||+++++|||+.+|.||+.|++..|.+++|.++.-+.. +|
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AG 228 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CC
Confidence 899999999999976 999888764 367999999999999999999999999999998899998877666 68
Q ss_pred CeEEEEEEeccceeeeccCCCc
Q 015659 142 SVVQFEVELVSWITVVDLSKDG 163 (403)
Q Consensus 142 ~~l~~~v~l~~~~~~~dv~~d~ 163 (403)
....|.|.|..+....-..-|.
T Consensus 229 K~a~F~V~vkeVk~~elpEldD 250 (441)
T COG0544 229 KEATFKVKVKEVKKRELPELDD 250 (441)
T ss_pred CceEEEEEEEEEeecCCCCCCH
Confidence 8889999999987654444333
No 37
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.56 E-value=2.4e-07 Score=92.47 Aligned_cols=89 Identities=24% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (403)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~ 140 (403)
.++.||.|.++|+++. +|+.++++. ..++.|.+|.+.+++||+++|.||++|+++.| .++.-..|+.... +
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~~----~ 216 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEEL----A 216 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCcccC----C
Confidence 5788999999999987 899998874 37999999999999999999999999999999 6655455655442 6
Q ss_pred CCeEEEEEEeccceeeec
Q 015659 141 NSVVQFEVELVSWITVVD 158 (403)
Q Consensus 141 ~~~l~~~v~l~~~~~~~d 158 (403)
|.+..|.|++.++....-
T Consensus 217 gk~~~f~v~i~~I~~~~~ 234 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKEL 234 (408)
T ss_pred CCeEEEEEEEEEeccCCC
Confidence 889999999999875443
No 38
>PRK01490 tig trigger factor; Provisional
Probab=98.54 E-value=2.9e-07 Score=92.64 Aligned_cols=88 Identities=26% Similarity=0.506 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (403)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~ 140 (403)
.++.||.|+++|+++. +|..++++. ..++.|.+|.+.+++||+++|.||++|+++.|.+.+|.++ +... -+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~--~~~~----la 227 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDY--HAED----LA 227 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccc--cccc----CC
Confidence 4799999999999998 898888764 3689999999999999999999999999999955566544 3322 16
Q ss_pred CCeEEEEEEeccceeee
Q 015659 141 NSVVQFEVELVSWITVV 157 (403)
Q Consensus 141 ~~~l~~~v~l~~~~~~~ 157 (403)
|....|.|.+..+....
T Consensus 228 gk~~~f~v~v~~V~~~~ 244 (435)
T PRK01490 228 GKEATFKVTVKEVKEKE 244 (435)
T ss_pred CCeEEEEEEEEEeccCC
Confidence 78899999999987543
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=2.7e-07 Score=66.82 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..|..+++.|+|.+|+..|+++++. .+....++.+++.|++++|+|.+|+..++++++.+|.|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4688999999999999999999997 233567999999999999999999999999999999874
No 40
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.32 E-value=2.6e-06 Score=63.96 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=60.9
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+..+...|.-++..|+|++|+..|++|+++....+. + .+....++.|+|.|+.+++++++|+..+.+||++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566788999999999999999999999998544321 1 3445789999999999999999999999999987
Q ss_pred c
Q 015659 397 R 397 (403)
Q Consensus 397 d 397 (403)
.
T Consensus 76 ~ 76 (78)
T PF13424_consen 76 F 76 (78)
T ss_dssp H
T ss_pred h
Confidence 4
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.32 E-value=8.3e-07 Score=86.92 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=47.0
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..++..|+.+|..++|..|+..|.+||.+-.. ...++.|+|.||+++++|.+|+.++++||+++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------NAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 346788999999999999999999999996321 12355555555555555555555555555555
Q ss_pred ccc
Q 015659 398 EAA 400 (403)
Q Consensus 398 p~~ 400 (403)
|.+
T Consensus 67 P~~ 69 (356)
T PLN03088 67 PSL 69 (356)
T ss_pred cCC
Confidence 544
No 42
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.23 E-value=1.8e-05 Score=79.11 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=65.1
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY 293 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f 293 (403)
++|++.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+.... +|.++.|
T Consensus 155 v~~~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f 222 (408)
T TIGR00115 155 IDFEGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATF 222 (408)
T ss_pred EEEEEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEE
Confidence 4566644 67777765 3578999999999999999999999999999999997777876433 5789999
Q ss_pred EEEEeeeccCc
Q 015659 294 EVEMMDFIKEK 304 (403)
Q Consensus 294 ~iel~~i~~~~ 304 (403)
.|+|.+|....
T Consensus 223 ~v~i~~I~~~~ 233 (408)
T TIGR00115 223 KVTVKEVKEKE 233 (408)
T ss_pred EEEEEEeccCC
Confidence 99999998643
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.4e-07 Score=87.08 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=58.3
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..+|+.||.+|..|+|..|+..|+.||.+ .+-+..+|+|+++||.++++|.+|+.+.++..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999997 22245689999999999999999999999888888
Q ss_pred cc
Q 015659 398 EA 399 (403)
Q Consensus 398 p~ 399 (403)
|.
T Consensus 67 p~ 68 (539)
T KOG0548|consen 67 PD 68 (539)
T ss_pred Cc
Confidence 75
No 44
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.20 E-value=5e-07 Score=88.26 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=64.2
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+..+|.++|++|+...|..|+..|.|||++ ++..+.++.|+|++++|.++|..|+++|.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 5678999999999999999999999999997 4445679999999999999999999999999999
Q ss_pred ccccC
Q 015659 397 REAAR 401 (403)
Q Consensus 397 dp~~~ 401 (403)
||..+
T Consensus 68 dP~~~ 72 (476)
T KOG0376|consen 68 DPTYI 72 (476)
T ss_pred Cchhh
Confidence 99764
No 45
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.12 E-value=2.9e-06 Score=61.84 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=50.9
Q ss_pred hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++.|+|.+|++.|++++..- +....++.++|.|++++|++++|...+.+++..+|.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN---------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT---------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 578999999999999999972 22356888999999999999999999999999999863
No 46
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=5.1e-06 Score=51.72 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=30.2
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.+++|+|.||+++++|.+|+.+|++||+++|.|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999975
No 47
>PRK01490 tig trigger factor; Provisional
Probab=98.07 E-value=5.8e-05 Score=76.09 Aligned_cols=78 Identities=13% Similarity=0.288 Sum_probs=63.5
Q ss_pred eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY 293 (403)
Q Consensus 214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f 293 (403)
++|+|.. +|..|+.+ ...++.|.+|.+.++|||+.+|.+|++|++..|.++....|+.... +|.+..|
T Consensus 166 vd~~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f 233 (435)
T PRK01490 166 IDFVGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATF 233 (435)
T ss_pred EEEEEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEE
Confidence 4566665 66777655 3568999999999999999999999999999999887767765332 5789999
Q ss_pred EEEEeeeccC
Q 015659 294 EVEMMDFIKE 303 (403)
Q Consensus 294 ~iel~~i~~~ 303 (403)
.|+|.+|...
T Consensus 234 ~v~v~~V~~~ 243 (435)
T PRK01490 234 KVTVKEVKEK 243 (435)
T ss_pred EEEEEEeccC
Confidence 9999999864
No 48
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.06 E-value=1e-05 Score=59.79 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=54.5
Q ss_pred hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+-++++++|+.|+..+++++.+ .+....++.++|.|+.++++|.+|+.+++++|+.+|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 5678999999999999999998 233456899999999999999999999999999999764
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=8.6e-06 Score=69.12 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=27.4
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
...++|++.|+.++|++.+|+..+.+||+++|.++
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 34678888888888888888888888888888764
No 50
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.9e-06 Score=81.20 Aligned_cols=91 Identities=29% Similarity=0.307 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHHccCHHHH
Q 015659 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (403)
Q Consensus 311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~---~~-~~~~~~~~~~~~~N~a~c~lkl~~~~~a 386 (403)
....+..+..+|+.||..|+.++|..|..+|.++++++...+...+ ++ +..++.++..++.|+|+|-+|++.|..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 4456788899999999999999999999999999999985222221 22 3457888899999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q 015659 387 IELCSKVIVEREAAR 401 (403)
Q Consensus 387 i~~~~~aL~~dp~~~ 401 (403)
+..|..+|+.++.+.
T Consensus 295 ~~~~~~~~~~~~s~t 309 (372)
T KOG0546|consen 295 RFRTNEALRDERSKT 309 (372)
T ss_pred eeccccccccChhhC
Confidence 999999999887654
No 51
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.98 E-value=1.6e-06 Score=81.27 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=70.7
Q ss_pred CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (403)
Q Consensus 310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~ 389 (403)
.++|.++++...|-.+-++|..|++..|+..|.+||.+ .+-...+|.++|.+++|++.|..||++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence 46788999999999999999999999999999999997 333467999999999999999999999
Q ss_pred HHHHHhcccccCC
Q 015659 390 CSKVIVEREAARG 402 (403)
Q Consensus 390 ~~~aL~~dp~~~~ 402 (403)
|..||+++|..|.
T Consensus 171 ~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 171 CDFAIEINPDSAK 183 (377)
T ss_pred hhhhhccCccccc
Confidence 9999999998763
No 52
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.89 E-value=5.4e-05 Score=64.32 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=61.5
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
.+.+-..|..+|..|+|+.|.+.|+-.+.+ ++.....+.|+++|+-.+|+|.+||..+.+|+.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345667799999999999999999999987 55567799999999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|.++
T Consensus 100 ~ddp 103 (157)
T PRK15363 100 IDAP 103 (157)
T ss_pred CCCc
Confidence 9775
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.88 E-value=2.8e-05 Score=65.95 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=59.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
....|..+++.|+|.+|+..|++++.+ .+.....+.|+|.|+.++++|.+|+..+.++++++|.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345799999999999999999999986 23345689999999999999999999999999999988
Q ss_pred CC
Q 015659 401 RG 402 (403)
Q Consensus 401 ~~ 402 (403)
+.
T Consensus 92 ~~ 93 (144)
T PRK15359 92 PE 93 (144)
T ss_pred cH
Confidence 64
No 54
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.1e-06 Score=73.63 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=71.6
Q ss_pred ecCCCeEEEEEEccCCCCC--CCCCCEEEEEEEEEEc--CCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEE
Q 015659 43 LGNSGIKKKLLKNGVDWDT--PEFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (403)
Q Consensus 43 ~~~~g~~~~vl~~G~G~~~--~~~gd~V~v~y~~~~~--~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~ 118 (403)
+.-.|++++|+..|+| +- ...|..|.+||..... .++++++|...|+|+.+++|.---++-|+..|..|+++|.+
T Consensus 7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 4567999999999999 44 4679999999998877 46799999999999999999888899999999999999999
Q ss_pred EEEEEcCC
Q 015659 119 VFTFTLPS 126 (403)
Q Consensus 119 ~v~~~vp~ 126 (403)
.| +|.-
T Consensus 86 qF--~~d~ 91 (329)
T KOG0545|consen 86 QF--WCDT 91 (329)
T ss_pred Hh--hhhh
Confidence 99 7754
No 55
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.77 E-value=5.2e-05 Score=74.56 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+....+.|+.+|+.|+|++|+..|++||.+-..+ .....+|+|+|.||.+++++++|+.+..+||+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~------------aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP------------DEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677788999999999999999999999972111 11124689999999999999999999999999
Q ss_pred c
Q 015659 396 E 396 (403)
Q Consensus 396 ~ 396 (403)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 7
No 56
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0013 Score=65.72 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=53.8
Q ss_pred cceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (403)
Q Consensus 222 ~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~ 301 (403)
||..|... ..+-+.|.||.+.+||||+.+|.||+.|+...|.+.-..-|..... .|.+..|.|+|..|.
T Consensus 173 Dg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L--------aGK~a~F~V~vkeVk 241 (441)
T COG0544 173 DGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL--------AGKEATFKVKVKEVK 241 (441)
T ss_pred cCeeccCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh--------CCCceEEEEEEEEEe
Confidence 45555543 4567899999999999999999999999998855543333433222 467899999999998
Q ss_pred cCc
Q 015659 302 KEK 304 (403)
Q Consensus 302 ~~~ 304 (403)
...
T Consensus 242 ~~e 244 (441)
T COG0544 242 KRE 244 (441)
T ss_pred ecC
Confidence 633
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.6e-05 Score=73.93 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (403)
Q Consensus 310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~ 389 (403)
..++....++..+++||.+|+..+|..|+..|+.||+++.. ....|.|+|+|++-+++|.+|.-+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---------------~a~yy~nRAa~~m~~~~~~~a~~d 105 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---------------NASYYSNRAATLMMLGRFEEALGD 105 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---------------chhhhchhHHHHHHHHhHhhcccc
Confidence 35667889999999999999999999999999999998432 267999999999999999999999
Q ss_pred HHHHHhccccc
Q 015659 390 CSKVIVEREAA 400 (403)
Q Consensus 390 ~~~aL~~dp~~ 400 (403)
+.+.++++|+-
T Consensus 106 ar~~~r~kd~~ 116 (486)
T KOG0550|consen 106 ARQSVRLKDGF 116 (486)
T ss_pred hhhheecCCCc
Confidence 99999999874
No 58
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.66 E-value=7.9e-05 Score=46.06 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.0
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
..+.++|.|++++++|++|+.+++++|+++|.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999999999999999999976
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.00013 Score=60.51 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=49.6
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC---------hHHHH----------HHHHHHHHhhhHHHHHHHHc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---------DDEQK----------LVKSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~---------~~~~~----------~~~~~~~~~~~N~a~c~lkl 380 (403)
.....|..+++.++|.+|...|++++..-....... ..+.. .+.+.....+.|+|.|++++
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 355667777777788888877777777521110000 00000 01122345677788888888
Q ss_pred cCHHHHHHHHHHHHhcccccC
Q 015659 381 KDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 381 ~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++++|+...+++++++|.+.
T Consensus 99 g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 99 GEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCHHHHHHHHHHHHHhccccc
Confidence 888888888888888877664
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00015 Score=71.04 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=60.2
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
..+..+|..+++.|+|..|+..|++|+.+ .+....+|++++.|++++++|.+|+..++++|+++|
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 34567889999999999999999999997 223356899999999999999999999999999999
Q ss_pred ccCC
Q 015659 399 AARG 402 (403)
Q Consensus 399 ~~~~ 402 (403)
.+..
T Consensus 102 ~~~~ 105 (356)
T PLN03088 102 GDSR 105 (356)
T ss_pred CCHH
Confidence 8753
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.00047 Score=60.17 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
+...+..+...|..++..|+|++|+..|++++....... ....++.|+|.|+.++++|.+|+..+.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666778889999999999999999999998632110 12458899999999999999999999999
Q ss_pred HhcccccC
Q 015659 394 IVEREAAR 401 (403)
Q Consensus 394 L~~dp~~~ 401 (403)
++++|.+.
T Consensus 99 l~~~p~~~ 106 (172)
T PRK02603 99 LELNPKQP 106 (172)
T ss_pred HHhCcccH
Confidence 99998763
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0005 Score=59.69 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
...+..+-..|..++..++|..|+..|++|+.+.... .....++.|+|.|+.+++++++|+..+.+||
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP------------YDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3466677778999999999999999999999973210 1123488999999999999999999999999
Q ss_pred hcccccC
Q 015659 395 VEREAAR 401 (403)
Q Consensus 395 ~~dp~~~ 401 (403)
.++|.+.
T Consensus 100 ~~~~~~~ 106 (168)
T CHL00033 100 ERNPFLP 106 (168)
T ss_pred HhCcCcH
Confidence 9988753
No 63
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.47 E-value=0.00024 Score=58.94 Aligned_cols=27 Identities=22% Similarity=-0.006 Sum_probs=21.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
....|..+++.++|..|+..|++++..
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677778888888888888888875
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.36 E-value=0.00041 Score=66.26 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
....|..+...|+|..|+..|.+|+++ .+-....+.|++.++...++|++|+.+++++++++|.+
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 344555555556666666666666554 22234578889999999999999999999999888876
Q ss_pred C
Q 015659 401 R 401 (403)
Q Consensus 401 ~ 401 (403)
+
T Consensus 166 ~ 166 (296)
T PRK11189 166 P 166 (296)
T ss_pred H
Confidence 3
No 65
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.00087 Score=62.02 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=60.1
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
..-..|..+|++|+|.+|+..|++++..... .+......+++|.||+++++|.+|+..+++.++++|.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3556788899999999999999999996433 2234456889999999999999999999999999999
Q ss_pred cCC
Q 015659 400 ARG 402 (403)
Q Consensus 400 ~~~ 402 (403)
+..
T Consensus 102 ~~~ 104 (243)
T PRK10866 102 HPN 104 (243)
T ss_pred CCc
Confidence 875
No 66
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.00029 Score=69.71 Aligned_cols=74 Identities=22% Similarity=0.104 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc---CHHHHHH
Q 015659 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIE 388 (403)
Q Consensus 312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~---~~~~ai~ 388 (403)
-|..+.++..|..||+.|-++....|+..|.+++.+ -+...-||.|+|++++|.+ +.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence 456788999999999999999999999999999998 4455779999999999976 6788999
Q ss_pred HHHHHHhccccc
Q 015659 389 LCSKVIVEREAA 400 (403)
Q Consensus 389 ~~~~aL~~dp~~ 400 (403)
+|..||++||+-
T Consensus 433 Dch~Alrln~s~ 444 (758)
T KOG1310|consen 433 DCHVALRLNPSI 444 (758)
T ss_pred hHHhhccCChHH
Confidence 999999999863
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.28 E-value=0.00094 Score=53.61 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=24.2
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.++.+++.|+.+++++.+|+...+++++..|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4567777777777777777777777777777653
No 68
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.27 E-value=0.00064 Score=50.81 Aligned_cols=65 Identities=29% Similarity=0.396 Sum_probs=41.9
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+...|..++..++|.+|+..++++++..... ..++.++|.|+...+++.+|+..+++++...|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3456777788888888888888887752211 1355666666666666666666666666665543
No 69
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.27 E-value=0.0012 Score=54.00 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (403)
Q Consensus 311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~ 390 (403)
....++....+.-+|-.+-..|+...|+.+|.+||.++ +.+.+.|+|+|+++--.++..+|+.+.
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHH
Confidence 34467888888889999999999999999999999984 345689999999999999999999999
Q ss_pred HHHHhcc
Q 015659 391 SKVIVER 397 (403)
Q Consensus 391 ~~aL~~d 397 (403)
++||++.
T Consensus 101 n~AleLa 107 (175)
T KOG4555|consen 101 NKALELA 107 (175)
T ss_pred HHHHHhc
Confidence 9999984
No 70
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.27 E-value=0.00036 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
|++.+|..+.|+++|..|..+|+.+|+++|.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 667899999999999999999999999999984
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.25 E-value=0.0013 Score=60.20 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=62.0
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+..+...|..+++.|+|..|+..|++++...... +.....++++|.|++++++|.+|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45567788999999999999999999998863321 123457899999999999999999999999999
Q ss_pred ccccCC
Q 015659 397 REAARG 402 (403)
Q Consensus 397 dp~~~~ 402 (403)
+|.+..
T Consensus 100 ~p~~~~ 105 (235)
T TIGR03302 100 HPNHPD 105 (235)
T ss_pred CcCCCc
Confidence 998764
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.00063 Score=63.20 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=59.4
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.++-.+-+.|.|..|++--++||.+ ++...++|..|..+|+-+++|.+|+..+.+||++||.|+
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 6677788899999999999999998 778899999999999999999999999999999999986
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.23 E-value=0.00073 Score=64.51 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+.-.-..|..+.+.|++..|+..|++|+.+ .+-...+++|++.++.++++|++|+..++++|+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444667899999999999999999999997 22234689999999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|.++
T Consensus 129 P~~~ 132 (296)
T PRK11189 129 PTYN 132 (296)
T ss_pred CCCH
Confidence 9875
No 74
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.19 E-value=0.00058 Score=68.92 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=34.9
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
-+.....++|+|..|-+++++++|+.++.+||+++|.-|+
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 4556678999999999999999999999999999997654
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.17 E-value=0.0016 Score=58.46 Aligned_cols=75 Identities=23% Similarity=0.146 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
.-..+...-+.|-.++..|++..|....++||+. ++-....++=||..|.++|+.+.|-+.+++|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 3456667778999999999999999999999997 3444568888999999999999999999999
Q ss_pred HhcccccCCC
Q 015659 394 IVEREAARGV 403 (403)
Q Consensus 394 L~~dp~~~~~ 403 (403)
|.++|.|.+|
T Consensus 96 lsl~p~~GdV 105 (250)
T COG3063 96 LSLAPNNGDV 105 (250)
T ss_pred HhcCCCccch
Confidence 9999999876
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.10 E-value=0.0013 Score=50.02 Aligned_cols=57 Identities=28% Similarity=0.314 Sum_probs=43.7
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
+-..|.-+|+.|+|.+|+..+++ +.. .+-...++.-+|.|++++++|++|+....+|
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 33469999999999999999988 443 2223445556799999999999999988775
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0012 Score=59.18 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
.+.+.+-|.-+...|+|++|...+++|+.-=.+.. ....+.|+..|.+|.|+++.|.++.+++|++|
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 34466778888888999999999999888422221 13478999999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|.+.
T Consensus 170 p~~~ 173 (250)
T COG3063 170 PQFP 173 (250)
T ss_pred cCCC
Confidence 9875
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.05 E-value=0.001 Score=50.54 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 331 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.++|+.|+..|.+++..-... . ....++++|.|++++++|.+|+..+++ +..+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCCC------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 589999999999999974321 1 345778899999999999999999999 8777765
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.03 E-value=0.002 Score=51.72 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=58.4
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
..+-..|..+++.|+|.+|+..|.+++...... .....++.+++.|+++.++|..|+..+.+++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 345678999999999999999999999863221 12234788999999999999999999999999998
Q ss_pred cc
Q 015659 399 AA 400 (403)
Q Consensus 399 ~~ 400 (403)
.+
T Consensus 71 ~~ 72 (119)
T TIGR02795 71 KS 72 (119)
T ss_pred CC
Confidence 75
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.03 E-value=0.0024 Score=64.87 Aligned_cols=75 Identities=19% Similarity=0.081 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+..++..|+-+-..++|.+|+..|++|+.+++...+.+ ++.....+.|||..|.+.++|.+|..+|++|++
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 3455566789999999999999999999999998765555 666788999999999999999999999999998
Q ss_pred cc
Q 015659 396 ER 397 (403)
Q Consensus 396 ~d 397 (403)
+-
T Consensus 312 I~ 313 (508)
T KOG1840|consen 312 IY 313 (508)
T ss_pred HH
Confidence 63
No 81
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.00 E-value=0.0032 Score=52.67 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=59.6
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
..+-..|-+.+++|+|..|+..++....-.... +......++++-+|+|.++|..|+...++-++++|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 455667888999999999999887766654432 22345789999999999999999999999999999
Q ss_pred ccCCC
Q 015659 399 AARGV 403 (403)
Q Consensus 399 ~~~~~ 403 (403)
.+..+
T Consensus 79 ~hp~v 83 (142)
T PF13512_consen 79 THPNV 83 (142)
T ss_pred CCCCc
Confidence 98754
No 82
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0013 Score=40.46 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.++.++|.||.+++++++|+.+.+++++++|.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468899999999999999999999999999943
No 83
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.0022 Score=56.33 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=60.4
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+--+-.+|-.+.|.++++.|+.-.+|||.+ .+.+.+++..||-+|-|+..|+.|+.++.++|++|
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 334556788889999999999999999998 55567788899999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|++.
T Consensus 199 Ps~~ 202 (271)
T KOG4234|consen 199 PSRR 202 (271)
T ss_pred cchH
Confidence 9864
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.91 E-value=0.0023 Score=57.27 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=61.8
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--------------C-CCC-ChHH------HHHHHHHHHHhhhHHHH
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--------------D-GSF-VDDE------QKLVKSLRVSCWLNSAA 375 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--------------~-~~~-~~~~------~~~~~~~~~~~~~N~a~ 375 (403)
+......|.-+...|+|..|+..|++|+++-.. . ... .++- ..+.++-....++|+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 455667788888899999999999998885421 0 010 1111 12234445679999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcccccC
Q 015659 376 CCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 376 c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++++++|++|+.+++++|+++|.+.
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999864
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.00045 Score=67.21 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=60.8
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
..||-+|+..+|.+|++.|+.||+.+.+.. +.+++++++|+...+++.|.|++||..++..++..|.
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 569999999999999999999999866543 7889999999999999999999999999998888774
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.0046 Score=55.57 Aligned_cols=72 Identities=22% Similarity=0.179 Sum_probs=57.4
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..+-..|..+|..|+|.+|+..|++.+......+ ....+.+++|.|+++.++|..|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~------------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP------------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677889999999999999999999998754422 234577899999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|.+.
T Consensus 73 P~~~ 76 (203)
T PF13525_consen 73 PNSP 76 (203)
T ss_dssp TT-T
T ss_pred CCCc
Confidence 9875
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.80 E-value=0.0014 Score=55.74 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=48.0
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
..|-.+=..|+|++|+..|.+|+.+-.. ....+.|++.|++++|+...|+...+.|+..-
T Consensus 74 gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---------------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 74 RLGECCQAQKHWGEAIYAYGRAAQIKID---------------APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3344444678999999999999997222 23588999999999999999999999888764
No 88
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.79 E-value=0.0026 Score=70.10 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=56.3
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHH------HHHHHHHHHhhhHHHHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQ------KLVKSLRVSCWLNSAACCLK 379 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~------~~~~~~~~~~~~N~a~c~lk 379 (403)
......|..+.+.|++.+|+..|++|+..-.... +..++-. .++.+-...++.|+|.|+.+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566667777777777777777776421100 0000000 11233345688999999999
Q ss_pred ccCHHHHHHHHHHHHhcccccCCC
Q 015659 380 LKDYQGAIELCSKVIVEREAARGV 403 (403)
Q Consensus 380 l~~~~~ai~~~~~aL~~dp~~~~~ 403 (403)
+|++.+|+..+++||+++|.++.+
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchh
Confidence 999999999999999999988754
No 89
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.79 E-value=0.0046 Score=53.90 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=55.6
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC--------------HH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------------YQ 384 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~--------------~~ 384 (403)
..+...|..+++.|+|+.|+..|.+|+... +.....+.|++.|+.++++ +.
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~ 137 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELN---------------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFD 137 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHH
Confidence 456778999999999999999999999972 2234567889999998887 68
Q ss_pred HHHHHHHHHHhccccc
Q 015659 385 GAIELCSKVIVEREAA 400 (403)
Q Consensus 385 ~ai~~~~~aL~~dp~~ 400 (403)
+|+...++++.++|.|
T Consensus 138 ~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 138 KAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHhhCchh
Confidence 8888999999999876
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.77 E-value=0.0025 Score=60.32 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=60.4
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------------CCCCChHHH---HHHHHHHHHhhhHHHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE----------------DGSFVDDEQ---KLVKSLRVSCWLNSAACC 377 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------------~~~~~~~~~---~~~~~~~~~~~~N~a~c~ 377 (403)
.+++.-+.|+++|-+|+|..|+..|..|++.-.. ....--.+. -++++-...+..-++.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4667778999999999999999999999884110 000000112 233445556777788888
Q ss_pred HHccCHHHHHHHHHHHHhcccccC
Q 015659 378 LKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 378 lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
||+|++++|..+.+++|.-+|+|.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcc
Confidence 888888888888888888888764
No 91
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.77 E-value=0.0018 Score=40.73 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
+++|||.+|.++++|++|+..+.++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999665543
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.00086 Score=67.18 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=59.5
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccC-------------CCCChH------HHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSED-------------GSFVDD------EQKLVKSLRVSCWLNSAACCLKLKDY 383 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~~~~------~~~~~~~~~~~~~~N~a~c~lkl~~~ 383 (403)
..|--++-.++|.+|+.+|+.||..=..+ ...+++ ....+++-.+...+|||.|++.+|.|
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 35777888999999999999998852111 111111 11345677788999999999999999
Q ss_pred HHHHHHHHHHHhccccc
Q 015659 384 QGAIELCSKVIVEREAA 400 (403)
Q Consensus 384 ~~ai~~~~~aL~~dp~~ 400 (403)
.+|+.+.-.||.+.+.+
T Consensus 515 kEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999999998874
No 93
>PRK12370 invasion protein regulator; Provisional
Probab=96.75 E-value=0.0033 Score=65.43 Aligned_cols=64 Identities=6% Similarity=-0.033 Sum_probs=54.1
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..|.-+...|+|++|+..|++|+++ .+.....++++|.+++.+|++++|+..++++++++|.+.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 4577778889999999999999887 222345789999999999999999999999999999864
No 94
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.74 E-value=0.0051 Score=54.88 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+......|..+++.|+|.+|+..|+++++.... ...++.+++.+++.++++.+|+....+++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566788888888888888888888775211 1224444555555555555555555555555
Q ss_pred ccc
Q 015659 397 REA 399 (403)
Q Consensus 397 dp~ 399 (403)
+|.
T Consensus 95 ~~~ 97 (234)
T TIGR02521 95 NPN 97 (234)
T ss_pred CCC
Confidence 443
No 95
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.73 E-value=0.0024 Score=64.59 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=62.6
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
-++.+-..||-+=.+|+++.|+..|+.|+++ ++..+-.|.|+|+|+...++-..|...|.+||++
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---------------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL---------------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 4556667888888899999999999999997 6667889999999999999999999999999999
Q ss_pred ccccC
Q 015659 397 REAAR 401 (403)
Q Consensus 397 dp~~~ 401 (403)
+|.+.
T Consensus 180 nP~l~ 184 (966)
T KOG4626|consen 180 NPDLY 184 (966)
T ss_pred Ccchh
Confidence 99764
No 96
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.70 E-value=0.0097 Score=57.75 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCC---CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDG---SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
-..|...|+.++|..|+.+|+-||.++.... .........+-.+..-+..-++.|||++++.+-|+.+..+.+-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3468899999999999999999999875421 1122233344555666778899999999999999999999999999
Q ss_pred cc
Q 015659 399 AA 400 (403)
Q Consensus 399 ~~ 400 (403)
..
T Consensus 260 ~~ 261 (569)
T PF15015_consen 260 SY 261 (569)
T ss_pred ch
Confidence 74
No 97
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.68 E-value=0.0036 Score=66.02 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHHH------HHHHHHHhhhHHHHHHHHc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQKL------VKSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~------~~~~~~~~~~N~a~c~lkl 380 (403)
.+...|.-+|..|+|.+|+..|++++.+-.... +..++-... ..+....++++++.+++.+
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 344667778888888888888888877521100 000000000 1112233555566666666
Q ss_pred cCHHHHHHHHHHHHhccccc
Q 015659 381 KDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 381 ~~~~~ai~~~~~aL~~dp~~ 400 (403)
++|.+|+..+++|++++|.+
T Consensus 481 g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred cCHHHHHHHHHHHHhcCCcc
Confidence 66666666666666665543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0018 Score=60.07 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=54.4
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
+..+.+.|--+||.|+|+.|+++|+.|+..--+ ..-+-+|+|+||++.+++.+|+++.++.++.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy---------------qpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY---------------QPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCC---------------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 455667788899999999999999999997322 2357799999999999999999999998763
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.57 E-value=0.0043 Score=46.13 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=54.6
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.....|.-++..+++..|+..|++++...... ..++.+++.+++.++++.+|+..+.++++.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 34567888888999999999999999863322 157889999999999999999999999998873
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.53 E-value=0.0064 Score=54.45 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=37.2
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHH-HHccC--HHHHHHHHHHHHhcccccC
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKD--YQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~-lkl~~--~~~ai~~~~~aL~~dp~~~ 401 (403)
...++..|+...+...|..|+..+..- ..+.+-...+++|+|.|+ ...++ +.+|+...+++|+++|.+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~A--------l~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQA--------LQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 444555555555555566665554321 111222344666666663 45555 3666666666666666653
No 101
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0041 Score=36.54 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=30.1
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.++.|+|.|++.++++..|+....++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 367899999999999999999999999998853
No 102
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.032 Score=47.01 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~ 390 (403)
...+...|...-..++...++..|++|+.++.... .+-......++.....+...++.+++..++|..|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34444556667778899999999999999874421 33345557788999999999999999999999999999
Q ss_pred HHHHhcccccC
Q 015659 391 SKVIVEREAAR 401 (403)
Q Consensus 391 ~~aL~~dp~~~ 401 (403)
.++|.+||-|.
T Consensus 86 ~~~l~~dP~~E 96 (146)
T PF03704_consen 86 QRALALDPYDE 96 (146)
T ss_dssp HHHHHHSTT-H
T ss_pred HHHHhcCCCCH
Confidence 99999999874
No 103
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.35 E-value=0.02 Score=54.21 Aligned_cols=72 Identities=32% Similarity=0.453 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhHhhhc-CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659 316 EAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
..+..+...|.-+-+. +++++|+..|++|+.++..... ......++.|+|.++.++++|.+|+..++++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666777777777 8999999999999999865431 34456799999999999999999999999987
Q ss_pred hc
Q 015659 395 VE 396 (403)
Q Consensus 395 ~~ 396 (403)
..
T Consensus 183 ~~ 184 (282)
T PF14938_consen 183 KK 184 (282)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.0072 Score=55.20 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=57.5
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.++..|..+|.+|+|..|+...++|...-. ..-.+++=+++||.++|++..|...+.++|++.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p---------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAP---------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCC---------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 344589999999999999999999999621 12347788999999999999999999999999988
Q ss_pred cCC
Q 015659 400 ARG 402 (403)
Q Consensus 400 ~~~ 402 (403)
++-
T Consensus 167 ~p~ 169 (257)
T COG5010 167 EPS 169 (257)
T ss_pred Cch
Confidence 753
No 105
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.33 E-value=0.0093 Score=56.50 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
++....-.=+-..|-+--+.=+-.==|-... .+.+.+..++.|+|.+|+|++.|..|-.+|+.||.+|
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~i---------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAI---------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhh---------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3444444445566666666655554442221 1134455677888888888888888888888887776
No 106
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.26 E-value=0.0054 Score=37.23 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+++++|.|+.+++++.+|+...+++++..|.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999864
No 107
>PRK15331 chaperone protein SicA; Provisional
Probab=96.22 E-value=0.019 Score=49.14 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
..+.+-..|-.+|..|+|..|...|+-.+.+ +......+..+|+|+..+++|.+|+..+..+..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667799999999999999999776664 2222446788999999999999999999998888
Q ss_pred ccccC
Q 015659 397 REAAR 401 (403)
Q Consensus 397 dp~~~ 401 (403)
++.|.
T Consensus 101 ~~~dp 105 (165)
T PRK15331 101 LKNDY 105 (165)
T ss_pred ccCCC
Confidence 87664
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.20 E-value=0.02 Score=53.51 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=54.5
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.--.|..+|..|+|..|+..|+++++.....+ ....++++++.|+.+++++.+|+..++++++..|.+
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34567888888888888888888887644322 233477889999999999999999999999998876
Q ss_pred C
Q 015659 401 R 401 (403)
Q Consensus 401 ~ 401 (403)
.
T Consensus 251 ~ 251 (263)
T PRK10803 251 D 251 (263)
T ss_pred H
Confidence 3
No 109
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.014 Score=59.30 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=61.7
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
.-+...+..+|+..+|..|++.|.+-++++..+. + .....++.-|||.|||++.+.++|+....+|=+.||
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-----~----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN-----Y----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh-----h----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 3467889999999999999999999999875532 1 223478999999999999999999999999988887
Q ss_pred cc
Q 015659 399 AA 400 (403)
Q Consensus 399 ~~ 400 (403)
-+
T Consensus 426 ~~ 427 (872)
T KOG4814|consen 426 QS 427 (872)
T ss_pred cc
Confidence 54
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0077 Score=60.44 Aligned_cols=67 Identities=21% Similarity=0.119 Sum_probs=58.6
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
..+...|-.+=|.++|..|+..|++||.+ .+.....|.-+|.||..+|+++.|+.+.++||-++|
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l---------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL---------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHc---------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 33556788888999999999999999997 333456889999999999999999999999999999
Q ss_pred cc
Q 015659 399 AA 400 (403)
Q Consensus 399 ~~ 400 (403)
.|
T Consensus 521 ~n 522 (611)
T KOG1173|consen 521 DN 522 (611)
T ss_pred cc
Confidence 87
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.19 E-value=0.0045 Score=44.82 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
...+.++|.|++++++|.+|+.+++++|+++|.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 35789999999999999999999999999999875
No 112
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.13 E-value=0.017 Score=51.49 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=36.7
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
..|.-++..|+|.+|+..|.+++..... ......+.|++.|+.+++++.+|+..+.++++.+|.+
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 3455556666666666666666653110 0112345566666666666666666666666666544
No 113
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.03 E-value=0.0033 Score=39.04 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659 340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (403)
Q Consensus 340 ~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~ 388 (403)
.|+|||++ ++-....++|+|.+|...|++++|++
T Consensus 1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 38889987 44456799999999999999999863
No 114
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.02 E-value=0.011 Score=38.95 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
++.++|.+|..+|++++|+..++++|+.+|.|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5788999999999999999999999999999853
No 115
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.00 E-value=0.063 Score=43.25 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=55.6
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
..-..|...++.|-|+.|...|++|+.+-.. ++.++.=.-...-.-||.-|+-++.++++|++|+..+.++|.+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srt---iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRT---IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT---S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc---CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3456788889999999999999999998543 3333332235566679999999999999999999999999864
No 116
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.94 E-value=0.027 Score=48.74 Aligned_cols=74 Identities=12% Similarity=-0.075 Sum_probs=50.0
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH-------HH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL-------CS 391 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~-------~~ 391 (403)
..+...|.-+++.|++.+|+..|++|+.+-... .........++.|++-.+.+++++..|+.+ ..
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 356677899999999999999999999862111 111233344555555555599988855554 45
Q ss_pred HHHhccccc
Q 015659 392 KVIVEREAA 400 (403)
Q Consensus 392 ~aL~~dp~~ 400 (403)
+++..+|.+
T Consensus 145 ~a~~~~p~~ 153 (168)
T CHL00033 145 QAIALAPGN 153 (168)
T ss_pred HHHHhCccc
Confidence 677778754
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.82 E-value=0.0054 Score=58.07 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC------------CCChH-----------HHHHHHHHHHHhh
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG------------SFVDD-----------EQKLVKSLRVSCW 370 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~------------~~~~~-----------~~~~~~~~~~~~~ 370 (403)
++..+.+..+.+.+....+.|..++..|++.++.-.... ...++ +.-.+.+-.+..+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 456777778889999999999999999999988521100 00000 0011222334455
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 371 LNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 371 ~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.-+|-+|+--..|+.||+++.+|++++|.|.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 5566666666666666666666666666553
No 118
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.80 E-value=0.015 Score=65.95 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=56.5
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
...|..+++.|++.+|+..|++++..-. -...++.++|.++++++++.+|+..+++||+++|.|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN---------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4568889999999999999999999721 1234788999999999999999999999999999875
No 119
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.73 E-value=0.02 Score=63.26 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=19.9
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
.+..++..|++..|+..|++|+..
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 345556779999999999999986
No 120
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.01 Score=61.75 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHH
Q 015659 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAI 387 (403)
Q Consensus 310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai 387 (403)
+...-+..+...+++||.+|..++|..|.-.|..++.++..+ +.....+++|++.|++.++ +|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence 345567889999999999999999999999999999987643 3445779999999998765 799999
Q ss_pred HHHHHHHhcccc
Q 015659 388 ELCSKVIVEREA 399 (403)
Q Consensus 388 ~~~~~aL~~dp~ 399 (403)
..|+-|+...|.
T Consensus 114 ~E~~la~~~~p~ 125 (748)
T KOG4151|consen 114 PECELALESQPR 125 (748)
T ss_pred Cchhhhhhccch
Confidence 999999988774
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.59 E-value=0.05 Score=55.39 Aligned_cols=75 Identities=27% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
+.+..+.+.+..+=..++|+.|...|+++++++...++.. +......+.|||-+|+++|+|++|.....+||.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3455667778888889999999999999999987543333 446678999999999999999999999999987
Q ss_pred cc
Q 015659 396 ER 397 (403)
Q Consensus 396 ~d 397 (403)
..
T Consensus 396 ~~ 397 (508)
T KOG1840|consen 396 IL 397 (508)
T ss_pred HH
Confidence 64
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.48 E-value=0.039 Score=58.29 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
+.+.-+.+.+..+...|+|..|++.|..++.--.+. +..++.++|-||+.+++++.|+..+.+||.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445567778888889999999999998877742111 156899999999999999999999999999
Q ss_pred cccccCCC
Q 015659 396 EREAARGV 403 (403)
Q Consensus 396 ~dp~~~~~ 403 (403)
++|.|-|+
T Consensus 478 ~~p~~~D~ 485 (895)
T KOG2076|consen 478 LAPDNLDA 485 (895)
T ss_pred cCCCchhh
Confidence 99998663
No 123
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.023 Score=57.10 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.+++.|-..|+.+.|.+|...+++++........-. ..-.++.+|++..+-|++++.+||...++||.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 367889999999999999999999995543321100 023458999999999999999999999999999999
Q ss_pred cCC
Q 015659 400 ARG 402 (403)
Q Consensus 400 ~~~ 402 (403)
|+.
T Consensus 488 ~~~ 490 (611)
T KOG1173|consen 488 DAS 490 (611)
T ss_pred chh
Confidence 864
No 124
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.41 E-value=0.029 Score=63.66 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=57.5
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.+...|+.+...|++.+|+..|++|++.-.. ...+++++|.++.+++++++|+..++++++++|.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3456788899999999999999999997221 2347899999999999999999999999999998
Q ss_pred cC
Q 015659 400 AR 401 (403)
Q Consensus 400 ~~ 401 (403)
++
T Consensus 528 ~~ 529 (1157)
T PRK11447 528 DP 529 (1157)
T ss_pred CH
Confidence 75
No 125
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.36 E-value=0.028 Score=35.91 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
..+++|+|.+|..+++|.+|+..+.+++++-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578999999999999999999999998763
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.35 E-value=0.031 Score=59.40 Aligned_cols=67 Identities=7% Similarity=-0.161 Sum_probs=48.3
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.....++.+++.+++++|+..+++++.. .+.....++++|.|+.++++|++|+..++++|..+|.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 3445677777777777777777777775 2333557788888888888888888888888887776
Q ss_pred cC
Q 015659 400 AR 401 (403)
Q Consensus 400 ~~ 401 (403)
++
T Consensus 187 ~~ 188 (694)
T PRK15179 187 FE 188 (694)
T ss_pred cH
Confidence 54
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.32 E-value=0.03 Score=41.57 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 364 ~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
+....+++|+|.||..+++|++|+..++++|++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999976
No 128
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.30 E-value=0.039 Score=58.72 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+-..|..+++.|++.+|+..|++++..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345677888888888888888888875
No 129
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.30 E-value=0.019 Score=55.64 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
++.+.+..-..||.+|-.|+|..|+...+.-+.+..... + +.-.-.+++|++.||+-+++|..|++++.+.
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---D------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---D------RAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---h------HHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 444555566779999999999999999998888753311 1 2233458999999999999999999999998
Q ss_pred Hhc
Q 015659 394 IVE 396 (403)
Q Consensus 394 L~~ 396 (403)
|.+
T Consensus 262 l~L 264 (639)
T KOG1130|consen 262 LNL 264 (639)
T ss_pred HHH
Confidence 654
No 130
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.25 E-value=0.072 Score=48.88 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=60.0
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..+-+.|....+.|+|.+|++.|++....... + ++.-+..+.++.++.|-++|..|+...++=+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s--------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF----S--------PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C--------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 566778899999999999999999887764322 2 1223477889999999999999999999999999
Q ss_pred cccCC
Q 015659 398 EAARG 402 (403)
Q Consensus 398 p~~~~ 402 (403)
|.+..
T Consensus 102 P~~~n 106 (254)
T COG4105 102 PTHPN 106 (254)
T ss_pred CCCCC
Confidence 98865
No 131
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.19 E-value=0.038 Score=59.79 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=58.6
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..+...|+.+++.|+|..|+..|+++++.-.. ...++..+|.+++++++|.+|+..++++++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN---------------DAEARFLLGKIYLALGDYAAAEKELRKALSLG 86 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345677899999999999999999999986222 23578889999999999999999999999998
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|.+.
T Consensus 87 ~~~~ 90 (899)
T TIGR02917 87 YPKN 90 (899)
T ss_pred CChh
Confidence 8654
No 132
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.16 E-value=0.057 Score=49.26 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=55.7
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc--------cCHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------KDYQGAIELCSK 392 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl--------~~~~~ai~~~~~ 392 (403)
.-..|..+++.++|..|+..|+++++........ ...+++++.|++++ +++.+|+..+++
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE 140 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 4557899999999999999999999974332211 12577888888876 889999999999
Q ss_pred HHhcccccC
Q 015659 393 VIVEREAAR 401 (403)
Q Consensus 393 aL~~dp~~~ 401 (403)
++..+|.+.
T Consensus 141 ~~~~~p~~~ 149 (235)
T TIGR03302 141 LIRRYPNSE 149 (235)
T ss_pred HHHHCCCCh
Confidence 999999874
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.05 E-value=0.033 Score=57.66 Aligned_cols=65 Identities=15% Similarity=0.358 Sum_probs=56.8
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+..|+-.+++++|.+|.+.++..+.+ +++....++++..|++|+++|+.|.+++...+.++|+|+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence 44556667789999999999999997 667788999999999999999999999999999999986
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.02 E-value=0.095 Score=44.14 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~ 392 (403)
.-..|+.+|..|+|.+|...|++++.-- .+ ..+...+.+++|.|++.+++|++|+...+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d-------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PD-------PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3457899999999999999999999852 11 345566888999999999999999998865
No 135
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.97 E-value=0.075 Score=50.00 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=57.0
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-----------CCCh-HH-HHHHHH------HHHHhhhHHHHHHHHc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFVD-DE-QKLVKS------LRVSCWLNSAACCLKL 380 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~~-~~-~~~~~~------~~~~~~~N~a~c~lkl 380 (403)
-+...|+-+.+.|++.+|++.|++|++.-..+. ...+ ++ ...+.. -...++..+|.+++++
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 345678888899999999999999999742211 0011 11 011111 1234678899999999
Q ss_pred cCHHHHHHHHHHHHhcccccC
Q 015659 381 KDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 381 ~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++++|+..+++++..+|.|.
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-H
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999999874
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.94 E-value=0.1 Score=48.83 Aligned_cols=67 Identities=6% Similarity=-0.040 Sum_probs=53.5
Q ss_pred HHhhHh-hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~-fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..+-.+ ++.|+|.+|+..|++.++...... +...+++-++.+|++.++|.+|+..+.+++...|.+.
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 334444 567999999999999999753321 2234678899999999999999999999999999865
No 137
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.92 E-value=0.078 Score=52.15 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
++++++.+|.+++++++|+...+++++.+|.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3455666666666666666666666666554
No 138
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.88 E-value=0.049 Score=57.95 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred HhhHhhhcCcHHH----HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 324 EGNLLFKNGKYER----AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 324 ~Gn~~fk~~~~~~----A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.|..++..|+|.. |+..|++|+.+- +-...++.|++.+++++++|++|+..++++|+++|.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN---------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4555566666653 566666666541 112234555555555555555555555555555555
Q ss_pred c
Q 015659 400 A 400 (403)
Q Consensus 400 ~ 400 (403)
+
T Consensus 317 ~ 317 (656)
T PRK15174 317 L 317 (656)
T ss_pred C
Confidence 4
No 139
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.86 E-value=0.08 Score=52.04 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=51.3
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHHHHH-----------HHHHHhhhHHHH
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQKLVK-----------SLRVSCWLNSAA 375 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~-----------~~~~~~~~N~a~ 375 (403)
.+...|..+++.|+|.+|...|.++++.-.... +..++-...++ .....++.+++.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345557778888888888888888876311000 00000000111 112345678888
Q ss_pred HHHHccCHHHHHHHHHHHHhcccccC
Q 015659 376 CCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 376 c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++++.+++.+|+..++++++.+|.+.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 88999999999999999998888653
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.73 E-value=0.063 Score=57.12 Aligned_cols=70 Identities=1% Similarity=-0.156 Sum_probs=60.9
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+..+...|--....|+|+.|...+..++.+ .+-...++.|+|.+..+++++++|+..|+++|..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 444566777788899999999999999997 34457799999999999999999999999999999
Q ss_pred cccCC
Q 015659 398 EAARG 402 (403)
Q Consensus 398 p~~~~ 402 (403)
|.|+.
T Consensus 151 p~~~~ 155 (694)
T PRK15179 151 SSSAR 155 (694)
T ss_pred CCCHH
Confidence 99863
No 141
>PRK12370 invasion protein regulator; Provisional
Probab=94.66 E-value=0.035 Score=57.83 Aligned_cols=58 Identities=10% Similarity=-0.066 Sum_probs=49.2
Q ss_pred hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
..+++.+|+..|++|+.+ .+....++.++|.++..+++|++|+..+++||+++|.++.
T Consensus 316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 373 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD 373 (553)
T ss_pred cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 456789999999999997 2223457889999999999999999999999999998763
No 142
>PLN02789 farnesyltranstransferase
Probab=94.58 E-value=0.064 Score=51.73 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=35.0
Q ss_pred hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhccccc
Q 015659 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~dp~~ 400 (403)
+.+.+++++|+..|.++|.+ .+-...++++++.|+.+++ .+.+++..+++|++.+|.|
T Consensus 47 l~~~e~serAL~lt~~aI~l---------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 45677999999999999986 2223344445555555554 3455555555555555544
No 143
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.051 Score=57.90 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.+--+|--+|.+++|..|+..|++|+.+..... .+ ...=++.|+.|+++-..|+....+||++||.
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD-------------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~ 231 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACK-AD-------------VRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CC-------------ccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence 345667778999999999999999999754322 11 3344689999999999999999999999997
Q ss_pred cC
Q 015659 400 AR 401 (403)
Q Consensus 400 ~~ 401 (403)
++
T Consensus 232 ~v 233 (1018)
T KOG2002|consen 232 CV 233 (1018)
T ss_pred hH
Confidence 65
No 144
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.51 E-value=0.085 Score=32.00 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.0
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
.-+...|.-+|+.|+|++|+..|++|+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999997
No 145
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.49 E-value=0.21 Score=38.73 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=50.4
Q ss_pred hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
..+.++|..|+....+..++......... ........+|+|.++..+|++++|+..+++|+++-..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998887543221111 22344568999999999999999999999999875443
No 146
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.45 E-value=0.071 Score=46.30 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-----------CHHHHHHHHHHHHhccccc
Q 015659 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 332 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-----------~~~~ai~~~~~aL~~dp~~ 400 (403)
.-++.|+.+|++||.+ ++.+...+.|++.+|..+. -|++|..+..+|.+.+|+|
T Consensus 49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3577888888888887 5566778889999988766 3899999999999999998
Q ss_pred C
Q 015659 401 R 401 (403)
Q Consensus 401 ~ 401 (403)
.
T Consensus 114 e 114 (186)
T PF06552_consen 114 E 114 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.40 E-value=0.085 Score=57.22 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=23.4
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+...|..+.+.|++.+|+..|++++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566788889999999999999999986
No 148
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.38 E-value=0.4 Score=35.74 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+.+.-++|-.+|...+.++|++++++|++-+.. .+.+-.++.=++.+|.-.|+|.++++.+..=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778999999999999999999999997543 1223446666889999999999999988765554
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.30 E-value=0.25 Score=40.34 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
-+.|..+-..|+.++|+..|++|+.. +.+ ...+..++.+++.++-.+|++++|+...++++.-.|.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~-------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAA-----GLS-------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667777889999999999999995 222 2233458889999999999999999999999988776
No 150
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.26 E-value=0.1 Score=31.78 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
..+-..|..++..++|.+|+..|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45667899999999999999999999997
No 151
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.22 E-value=0.093 Score=56.81 Aligned_cols=84 Identities=23% Similarity=0.161 Sum_probs=49.9
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC-------------ChHHHHH------HHHHHHHhhhHHHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VDDEQKL------VKSLRVSCWLNSAACC 377 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~-------------~~~~~~~------~~~~~~~~~~N~a~c~ 377 (403)
.+..+...|..+++.|+|.+|...|++++..-...... .++-... ..+.....+..++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34556678999999999999999999998752211000 0000000 0111233555666666
Q ss_pred HHccCHHHHHHHHHHHHhccccc
Q 015659 378 LKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 378 lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
++++++.+|+..++++++++|.+
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666666666666666654
No 152
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.03 E-value=0.1 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+...|+-+++.|+|++|+..|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456799999999999999999998865
No 153
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.01 E-value=0.34 Score=42.45 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.-..+.+.|+-+++.|++..|++.|.++.+++.. ....+..++|+..+.+-+++|..+..+.++|-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455668899999999999999999999998544 4456778889999999999999999998888443
No 154
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=0.12 Score=51.49 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCC-------------CChHH------HHHHHHHHHHhhhHHHHH
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDE------QKLVKSLRVSCWLNSAAC 376 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~------~~~~~~~~~~~~~N~a~c 376 (403)
..+..+--+|.-+|-.|++..|-..+.++|.+-..... .+++- ...+++....+|.-|++.
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 45777888999999999999999999999986322221 11111 133455666788889999
Q ss_pred HHHccCHHHHHHHHHHHHhcccccC
Q 015659 377 CLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 377 ~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++=+++|+.|+.+..++++++|.|+
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhh
Confidence 9999999999999999999998875
No 155
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.87 E-value=0.074 Score=53.72 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 339 ~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
+.|.||+++++.-- ..++-...+++.+.+.+-.-.+..+||..+++||++-|+
T Consensus 444 ~efdraiDcf~~AL--------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 444 GEFDRAVDCFEAAL--------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred hHHHHHHHHHHHHH--------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 44778888776511 113334568888899988889999999999999999886
No 156
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.087 Score=49.92 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=53.2
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
-+++-..|--|||..|+.--++|+.+ ++-..+++..-|.|++.|+.|..|+..|++.|++|-
T Consensus 123 ~NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 123 TNRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 34455555668999999999999997 666789999999999999999999999999998874
No 157
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.065 Score=49.25 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.+..+--+.-+.||..|.+.|.+++.. ++-.+..-+|-|+|++-+++..+|++..+.+++.+|..
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 345555566788999999999999886 22235577999999999999999999999999999986
Q ss_pred C
Q 015659 401 R 401 (403)
Q Consensus 401 ~ 401 (403)
+
T Consensus 320 ~ 320 (366)
T KOG2796|consen 320 Y 320 (366)
T ss_pred c
Confidence 4
No 158
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.71 E-value=0.12 Score=51.28 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=54.3
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
.+--+++.++.++|...+++++... +....+..|+|.+++|.+++++|+...+..+.-+|.|++
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 3555678889999999999999973 333568899999999999999999999999999998864
No 159
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.57 E-value=0.12 Score=55.96 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=22.2
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
.++..+|.+++++++|.+|....+++|+.+|.|+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 35556666666666666666666666666666553
No 160
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.51 E-value=0.7 Score=37.48 Aligned_cols=78 Identities=17% Similarity=0.043 Sum_probs=61.8
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH----HHHhc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS----KVIVE 396 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~----~aL~~ 396 (403)
.--.|+..|+++++-.|+-.|++|+.+.+.....++.+..++--+.+...-|||.-+-.+++-+=.+++.. +||.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44578999999999999999999999877654445566667777888889999999999999888877653 44554
Q ss_pred cc
Q 015659 397 RE 398 (403)
Q Consensus 397 dp 398 (403)
-|
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 161
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.42 E-value=0.053 Score=55.52 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=58.4
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------CCCCChHHHHHH---------HHHHHHhhhHHHHHHHHcc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQKLV---------KSLRVSCWLNSAACCLKLK 381 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~~~~~~~~~~~---------~~~~~~~~~N~a~c~lkl~ 381 (403)
....||=+=-+++|+.|++++++|+.+=.. .....+|..... .+-...+++=+..+|+|++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 456798888899999999999999995321 011122222211 2223346777899999999
Q ss_pred CHHHHHHHHHHHHhcccccC
Q 015659 382 DYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 382 ~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++.|..+..+|++++|.|.
T Consensus 504 k~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hhhHHHHHHHhhhcCCccch
Confidence 99999999999999999874
No 162
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.41 E-value=0.13 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
..|..+...|+|.+|...|++++..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777888888888888888885
No 163
>PLN02789 farnesyltranstransferase
Probab=93.30 E-value=0.18 Score=48.62 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=34.8
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++-...++++++.++.++++|++++..|+++|+.||.|.
T Consensus 138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 444567899999999999999999999999999999885
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.17 E-value=0.25 Score=50.91 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=53.1
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.|-.+...|++++|...|++|+.+- + ....|..++.++.-.|++++|+..+.+|+.++|...
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~---------------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE---------------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4555667899999999999999972 2 134889999999999999999999999999999864
No 165
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=93.12 E-value=0.54 Score=34.89 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA 374 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a 374 (403)
+..|..+-.+|.+.=++|+|++|+..|..+++++.. .....++..+..-..++.=|+++|
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 345666667788888889999999999999999865 333344455555555566666665
No 166
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.09 E-value=0.12 Score=50.93 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc------CCCCC-------hHHHHHHHHHHHHh------hhHHHHHHHHc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSE------DGSFV-------DDEQKLVKSLRVSC------WLNSAACCLKL 380 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~------~~~~~-------~~~~~~~~~~~~~~------~~N~a~c~lkl 380 (403)
.+-..||..|.+|+|.+|...|+.||.--.+ .-+.+ ++-...+-++...+ +.-+|..|--+
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3457799999999999999999999873111 01111 11122222222222 22345556667
Q ss_pred cCHHHHHHHHHHHHhccccc
Q 015659 381 KDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 381 ~~~~~ai~~~~~aL~~dp~~ 400 (403)
.+..+||....+|-.+-|.+
T Consensus 572 ed~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPND 591 (840)
T ss_pred hCHHHHHHHHHHhcccCCCC
Confidence 77788888877777766654
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.07 E-value=0.27 Score=48.72 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=50.6
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
+.-+...+.-+.+.++|+.|+..-++|+.+.. ..-.++..||.||+++++|+.|+...+-+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP---------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSP---------------SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 34455678888999999999999999999833 33568899999999999999999887754
No 168
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.01 E-value=0.45 Score=44.91 Aligned_cols=87 Identities=22% Similarity=0.186 Sum_probs=67.8
Q ss_pred ccCchHHHHHHHHHHHHhhHhhhcC-cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHH
Q 015659 308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (403)
Q Consensus 308 ~m~~~e~~~~~~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~a 386 (403)
.+++......+..+-+.|..+++++ +|..|..--++|.++++.... .+.......+++.+++.-+|.||+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 5577778889999999999999999 999999999999999865211 11222334678899999999999999988655
Q ss_pred HHHHHHHHhc
Q 015659 387 IELCSKVIVE 396 (403)
Q Consensus 387 i~~~~~aL~~ 396 (403)
.+ |..+|+.
T Consensus 104 ~k-a~~~l~~ 112 (278)
T PF08631_consen 104 EK-ALNALRL 112 (278)
T ss_pred HH-HHHHHHH
Confidence 44 6666543
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=0.35 Score=44.79 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=47.6
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
|..+|..|+|..|...|..+++-+...+..+| .++-++.|+..+++.+.|.....++++.-|+++
T Consensus 185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 185 GESLYAQGDYEDAAYIFARVVKDYPKSPKAPD------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCCCCCCChH------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 66666666666666666666664433333322 667789999999999999999999999888864
No 170
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.74 E-value=0.11 Score=53.18 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=30.5
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.+-...+..=+...+.++|+.++|+...++|+.+||.|.
T Consensus 519 NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 519 NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 344455666677888899999999999999999998873
No 171
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.63 E-value=0.94 Score=33.54 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLK 379 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a~c~lk 379 (403)
+.|..+-.++-++=+.|+|.+|+.+|++|+..|.. ...-+++....+-.-++.=|.|+|-..-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999998854 22333344444445566667777765433
No 172
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=92.61 E-value=0.57 Score=34.98 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAA 375 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a~ 375 (403)
.+..+-.+|.++=+.|+|.+|+..|.+||++|.. ...-+++.....-..++.-|.++|-
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE 64 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAE 64 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556666788888999999999999999999855 2222333444444455556666653
No 173
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=92.57 E-value=0.62 Score=34.59 Aligned_cols=60 Identities=17% Similarity=0.008 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA 374 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a 374 (403)
+..|..+-.+|.+.=+.|+|+.|+..|..||+++.. ...-+++.....-.-++.=|+++|
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 456677777888888999999999999999999855 222233333333333444455553
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.42 E-value=0.69 Score=43.68 Aligned_cols=72 Identities=32% Similarity=0.354 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
-..+..+...||.+=..++|.+|...|.+|.++...... .......|.+.+.|+.+. ++.+|+..+++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 345666677777776888999999999999998644211 223456788888888777 9999999999998
Q ss_pred hc
Q 015659 395 VE 396 (403)
Q Consensus 395 ~~ 396 (403)
++
T Consensus 102 ~~ 103 (282)
T PF14938_consen 102 EI 103 (282)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.38 E-value=0.14 Score=50.91 Aligned_cols=39 Identities=5% Similarity=-0.066 Sum_probs=35.5
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++-....++|++.+|+++++|++|+..|++||+++|.++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 455567999999999999999999999999999999875
No 176
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.36 E-value=0.16 Score=42.00 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
|.+-+|..|.++|+|..++.+|+..|+.+|.|.
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 566699999999999999999999999999985
No 177
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.24 E-value=0.66 Score=42.95 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=53.8
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
.+.|.++|+.|+|.+|++.|+.+...+...+ ...+...++.++..|+.++++.+..+..|-+.|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3789999999999999999999966543211 1456677889999999999999999999988764
No 178
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.20 E-value=0.83 Score=33.99 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--CCCCChHHHHHHHHHHHHhhhHHHH
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAA 375 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--~~~~~~~~~~~~~~~~~~~~~N~a~ 375 (403)
..|..+-..+-++=+.|+|.+|+..|+.|+++|.. .....++.....-..++.=|.+||-
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE 65 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQ 65 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 34566667788888999999999999999999854 2221222222222445555666654
No 179
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.68 E-value=0.34 Score=52.71 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=59.5
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-CCC----------hHH--HHHHH------HHHHHhhhHHHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFV----------DDE--QKLVK------SLRVSCWLNSAACC 377 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~----------~~~--~~~~~------~~~~~~~~N~a~c~ 377 (403)
.+......+-..|+.|+|..|+..|+++++.-.... ... ..+ ...++ ......+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 344667788889999999999999999998633221 100 000 01111 11233455567799
Q ss_pred HHccCHHHHHHHHHHHHhcccccCC
Q 015659 378 LKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 378 lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
..+++|++|+..++++|+.+|.|..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 9999999999999999999999863
No 180
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.66 E-value=0.71 Score=33.47 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+.|..+-..|-.+=+.|+|+.|+..|++|+.+|..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44556666677777899999999999999999854
No 181
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.59 E-value=0.57 Score=50.31 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+.-.+|.+|-.|+|+.+...+.-|+..... ..+..-.++++|-||.++|+|++|..++-+++..+|.|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 345689999999999999999999997422 45566688999999999999999999999999999887
No 182
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=91.56 E-value=0.91 Score=45.11 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHH---------------------------------
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK--------------------------------- 360 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~--------------------------------- 360 (403)
.+......-+.|-.+|+.|+|..|+..|+..|..+......+.+|..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 34444444456999999999999999999999876432222221111
Q ss_pred -------------HHHHHHHHhhhHHHH-HHHHccCHHHHHHHHHHHHhccccc
Q 015659 361 -------------LVKSLRVSCWLNSAA-CCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 361 -------------~~~~~~~~~~~N~a~-c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.+++....+-++.|. ..+|.++|..|-..|++.|++.|..
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 123333334444443 3468899999999999999998864
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.94 E-value=0.2 Score=35.49 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 371 LNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 371 ~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+++|..+++.++|++|+..++++|+.+|.|.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 31 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP 31 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4689999999999999999999999999875
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.78 E-value=0.73 Score=44.61 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
....|.-++..|++++|+..|.+++...... ......++.++|.|++.+|++++|+...++++...|
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----------SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 4556888999999999999999999864321 123345778999999999999999999999987766
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=90.62 E-value=0.91 Score=39.04 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=45.0
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
.|--+=..++|++|+..|..|..+-..++. -...++.||+++++...|+.....|++
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~---------------p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYR---------------PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCC---------------ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344445667999999999999887444432 357799999999999999999888887
No 186
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=90.34 E-value=1.6 Score=32.33 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA 374 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a 374 (403)
++.+..+-.+|.+.=+.|+|..|+..|.+|++.|.. ....+++.....-..++.=|+++|
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 456777777888888999999999999999998854 111222233333333444455554
No 187
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.44 Score=47.27 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=51.5
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
||-+=-++++++|+..|++|+++ ++-...++.=|+.=|+.|++-..||..++.|++++|.+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 88887888999999999999997 44456677888888888888888888888888888864
No 188
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=90.13 E-value=2 Score=31.70 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA 374 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a 374 (403)
+..+..+-..|.+.=+.|+|..|+..|..|+..|.. ....+++.....-.-++.-|.++|
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 345556666777777889999999999999998855 222222333333333444555554
No 189
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=89.87 E-value=0.63 Score=43.67 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
....-+++.+++.++.....++...-.. +-...++.-+|.++.+.|++++|+..+.+||+++|.|.
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAA-------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3444567788888888888887753111 11245788899999999999999999999999999875
No 190
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.64 E-value=0.8 Score=28.84 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.9
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+..+...|+.++..|+|.+|...|++++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 456778899999999999999999999998654
No 191
>PRK14574 hmsH outer membrane protein; Provisional
Probab=89.11 E-value=0.76 Score=50.04 Aligned_cols=65 Identities=2% Similarity=-0.076 Sum_probs=43.5
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+...|.-+...|+|.+|+..|+++++.-... ..++.=+|..+.+++++.+|+..+.+++..+|.+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 3444666677899999999999999962211 1222344666667777777777777777666653
No 192
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.10 E-value=0.52 Score=44.83 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
..|..+|=.++-+.|++.|++.+.+-.+. ..+++|+++|.+--++++-++-...+||..-
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~s---------------peLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQS---------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCC---------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 34677888888888888888888874333 2499999999999999999999999998763
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.87 E-value=0.98 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+.+-..|..+.+.|++.+|+..|++|+++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556788999999999999999999997
No 194
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=88.75 E-value=1.3 Score=47.22 Aligned_cols=82 Identities=15% Similarity=-0.009 Sum_probs=55.9
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHH-----H-HHHHHHHHHhhhHHHHH--------------
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE-----Q-KLVKSLRVSCWLNSAAC-------------- 376 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~-----~-~~~~~~~~~~~~N~a~c-------------- 376 (403)
.+.++-..||.+|-+|+++.|.+....+|+.- +.....- . +..-.+...+..=+.++
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 37788899999999999999999999999973 2222211 0 01112222233333333
Q ss_pred --HHHccCHHHHHHHHHHHHhcccccC
Q 015659 377 --CLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 377 --~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..++++|.+|+-++++||+.+|.|-
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNW 241 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcch
Confidence 3457789999999999999999873
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=88.70 E-value=0.29 Score=46.48 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 333 ~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
++..|...|+....-+ +. ...+++-+|.|++.+++|++|.....+||+.+|.+.+
T Consensus 182 ~~~~A~y~f~El~~~~----~~-----------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKF----GS-----------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred hHHHHHHHHHHHHhcc----CC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 6777888887743321 11 1356778999999999999999999999999998753
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.30 E-value=0.97 Score=40.64 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=51.9
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
|.-+-++|+-+=.-|-+..|.--+.+++.+ ++.....++-+.+-+..-++|+.|.+..+-+|++|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 334445555555555666666667777776 44455688889999999999999999999999999
Q ss_pred cccC
Q 015659 398 EAAR 401 (403)
Q Consensus 398 p~~~ 401 (403)
|++.
T Consensus 130 p~y~ 133 (297)
T COG4785 130 PTYN 133 (297)
T ss_pred Ccch
Confidence 9863
No 197
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=1.6 Score=41.97 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=47.9
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
+..-..+.-.|.+--|++|+..|++.+.- .+..+.+--|+|+||.|+.-|+-+-.-..--|+--|
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 34445677778888999999999998875 455677889999999999887766544443344444
No 198
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.21 E-value=1.9 Score=40.46 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 351 DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
...|-+++.+.+..+..+++.-.|-.|++.+.+.+|+..|.++|.+||-+.
T Consensus 263 ~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e 313 (361)
T COG3947 263 DYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE 313 (361)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh
Confidence 445667788888999999999999999999999999999999999999763
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=87.91 E-value=2.6 Score=35.19 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=53.3
Q ss_pred ccccCchHHH--HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659 306 PWEMNNQGKI--EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383 (403)
Q Consensus 306 ~~~m~~~e~~--~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~ 383 (403)
.|-....+.+ .....+...+..+...|+|..|++.+++++.. .+..-.++.-+-.||..+|++
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence 4554444443 34556677788888999999999999999998 334455788888999999999
Q ss_pred HHHHHHHHHH
Q 015659 384 QGAIELCSKV 393 (403)
Q Consensus 384 ~~ai~~~~~a 393 (403)
..|+..+.+.
T Consensus 113 ~~A~~~Y~~~ 122 (146)
T PF03704_consen 113 AEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876655
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.70 E-value=0.8 Score=29.82 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=24.0
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
....|..+...|++++|++.|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345688889999999999999999997
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=2.1 Score=40.21 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------------CCCCChHHHH------HHHHHHHHhhhHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE----------------DGSFVDDEQK------LVKSLRVSCWLNSAACCL 378 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------------~~~~~~~~~~------~~~~~~~~~~~N~a~c~l 378 (403)
.--.|-.++..+++..|...|.+|+++.-. +...+.+-.. ..++-.+...+=+|..++
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345688999999999999999999997522 2222222222 234445567777999999
Q ss_pred HccCHHHHHHHHHHHHhcccccC
Q 015659 379 KLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 379 kl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..++|.+|+..-...|.+.|.|+
T Consensus 239 e~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999875
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.14 E-value=3 Score=42.73 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=63.3
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.+-+.+.-+...|+|.+|++.-++|++++...-...+...++++.....+..-+|-++..+|+-.+|...+...|..+|.
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 34556777788999999999999998877442222222234445556677888999999999999999999999999988
Q ss_pred cCC
Q 015659 400 ARG 402 (403)
Q Consensus 400 ~~~ 402 (403)
+..
T Consensus 257 D~~ 259 (652)
T KOG2376|consen 257 DEP 259 (652)
T ss_pred Cch
Confidence 753
No 203
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.90 E-value=1.7 Score=39.99 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH-ccCHHHHHHHHHHHHh
Q 015659 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVIV 395 (403)
Q Consensus 334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk-l~~~~~ai~~~~~aL~ 395 (403)
-++|...|++|+.+....-+++ ++++..+.+|.|..|.. +++..+|+..+.+|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999986633344 78899999999998855 8999999999999875
No 204
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.81 E-value=1.1 Score=40.49 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=51.3
Q ss_pred hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
..+++.++++.|...|.+|+.+...+ ..-+..++-.+.|.+++..|...++++|++||.+.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34678999999999999999973221 335677788889999999999999999999998753
No 205
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=3.2 Score=42.58 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=48.7
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHH-----------H---------HHHHHHhhhHHHHHHHHc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL-----------V---------KSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~-----------~---------~~~~~~~~~N~a~c~lkl 380 (403)
+.-+|..+|+.++|.+|+..|+..++- ...+.++..+ . ..--..+++|.|-.++-.
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence 344788999999999999999877552 1111111110 0 001234789999999999
Q ss_pred cCHHHHHHHHHHHH
Q 015659 381 KDYQGAIELCSKVI 394 (403)
Q Consensus 381 ~~~~~ai~~~~~aL 394 (403)
++|.+|++...+|+
T Consensus 189 gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 189 GKYNQAIELLEKAL 202 (652)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999888884
No 206
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.69 E-value=4.3 Score=32.98 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=53.4
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
...+-+.|+|..++..=.+||.|++-.....+++- ++-+..-.|+|+++--+++.++|+...+.+-++
T Consensus 62 s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 62 SGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44556889999999999999999988777776664 345778899999999999999999999887553
No 207
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=1.6 Score=40.08 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=49.3
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc---CHHHHHHHHHHHHhc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSKVIVE 396 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~---~~~~ai~~~~~aL~~ 396 (403)
...+.++-+|..++|++|.-+|++.+-. ++....++..+|-.+.-++ +..-|..++.++|++
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3456678889999999999999999886 4444556666666655554 677888889999988
Q ss_pred cccc
Q 015659 397 REAA 400 (403)
Q Consensus 397 dp~~ 400 (403)
+|.|
T Consensus 221 ~~~~ 224 (289)
T KOG3060|consen 221 NPKN 224 (289)
T ss_pred ChHh
Confidence 8843
No 208
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=86.41 E-value=6.4 Score=29.00 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+..|..+...|..+=+.|+|..|+..|.+|++.|..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345556666677777789999999999999998854
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.85 E-value=3.5 Score=36.29 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.-..||.+-..|+|.+|...|++++.-+-.. + ..+++-+|.+++.++++..|....+++.+.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~---d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAH---D-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCC---C-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 3456899999999999999999999853221 1 347788999999999999999999999998875
No 210
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.62 E-value=1.6 Score=47.64 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=26.9
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
=+.|++++|...|++++++ ++....+++|+|-.|... +.++|+..+.+|++
T Consensus 127 dk~g~~~ka~~~yer~L~~---------------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 127 AKLNENKKLKGVWERLVKA---------------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHcCChHHHHHHHHHHHhc---------------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 3445555555555555554 222344555555555555 55555555555544
No 211
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.61 E-value=5 Score=29.72 Aligned_cols=35 Identities=20% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+.+..+-..|++.=..|+|++|+..|..|++++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45556666777777899999999999999999866
No 212
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=2.5 Score=41.54 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.+.-+||-+...++.+.|+-.|+.|..+ .+.+..+|--+-.|||..+.+.+|...++.++..=|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 3455677777777787787777777776 5666789999999999999999999999999998888
Q ss_pred cCC
Q 015659 400 ARG 402 (403)
Q Consensus 400 ~~~ 402 (403)
||.
T Consensus 401 sA~ 403 (564)
T KOG1174|consen 401 SAR 403 (564)
T ss_pred chh
Confidence 763
No 213
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.08 E-value=1.6 Score=41.19 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (403)
Q Consensus 311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~ 390 (403)
+..+.+....+| .+...++.|+.++|.+.|+-|+.+-.. ...++.-+.+-.---++.-+|-.++
T Consensus 110 pa~~kEA~~Al~-~A~~~~~~Gk~ekA~~lfeHAlalaP~---------------~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 110 PAKVKEAILALK-AAGRSRKDGKLEKAMTLFEHALALAPT---------------NPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred chhhHHHHHHHH-HHHHHHhccchHHHHHHHHHHHhcCCC---------------CHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 333444444444 577899999999999999999997322 1234444554444445666778888
Q ss_pred HHHHhcccccC
Q 015659 391 SKVIVEREAAR 401 (403)
Q Consensus 391 ~~aL~~dp~~~ 401 (403)
.+||.++|+|.
T Consensus 174 ~~ALtisP~ns 184 (472)
T KOG3824|consen 174 VKALTISPGNS 184 (472)
T ss_pred heeeeeCCCch
Confidence 99999999874
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=85.07 E-value=0.89 Score=32.82 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=26.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 373 SAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 373 ~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++..|++.++|..|+..++++|.++|.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 35678999999999999999999999875
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.96 E-value=4.7 Score=37.48 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=58.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.-+.+-.+|+.|+|..|...|..-++-+..... ....++=|..|++.+++|.+|......+..-.|.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 778899999999999999999999887654332 22366779999999999999999999999888876
Q ss_pred CC
Q 015659 401 RG 402 (403)
Q Consensus 401 ~~ 402 (403)
..
T Consensus 212 ~K 213 (262)
T COG1729 212 PK 213 (262)
T ss_pred CC
Confidence 53
No 216
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=2.8 Score=41.27 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=46.6
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+.-+-.+|+++.++..-++++..... ..++.-++..+-..+++++|+.++.+||.+||.|-
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 33444566666666666666665332 34888899999999999999999999999999874
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=84.69 E-value=4.1 Score=36.33 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-----------CHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGAIEL 389 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-----------~~~~ai~~ 389 (403)
.-..|..+|+.++|..|+..|++-++.....+ ...-+++.++.|++++. ...+|+..
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~ 112 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE 112 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH
Confidence 34568899999999999999999998744322 12235566777766653 34588999
Q ss_pred HHHHHhcccccC
Q 015659 390 CSKVIVEREAAR 401 (403)
Q Consensus 390 ~~~aL~~dp~~~ 401 (403)
++..+..-|.+.
T Consensus 113 ~~~li~~yP~S~ 124 (203)
T PF13525_consen 113 FEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHH-TTST
T ss_pred HHHHHHHCcCch
Confidence 999999888764
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.58 E-value=5.4 Score=33.50 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=52.6
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC---------------HHHHH
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD---------------YQGAI 387 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~---------------~~~ai 387 (403)
..|-.+|++++|..|+..|.+=|++-...+..+ =+++-+++|++++.. ...|+
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd------------Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~ 119 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD------------YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF 119 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc------------HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH
Confidence 558889999999999999999999633332222 255568888888876 88999
Q ss_pred HHHHHHHhcccccC
Q 015659 388 ELCSKVIVEREAAR 401 (403)
Q Consensus 388 ~~~~~aL~~dp~~~ 401 (403)
.+..+++..-|.+.
T Consensus 120 ~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 120 RDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHCcCCh
Confidence 99999999888763
No 219
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=84.42 E-value=9.8 Score=31.70 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
+...+...-......+..+++..+...+.+.+.-... ........+.+|.+++..+++++|+...+++
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666666677777788888877767666664221 2244567888999999999999999999999
Q ss_pred Hhcccc
Q 015659 394 IVEREA 399 (403)
Q Consensus 394 L~~dp~ 399 (403)
+...|.
T Consensus 75 ~~~~~d 80 (145)
T PF09976_consen 75 LANAPD 80 (145)
T ss_pred HhhCCC
Confidence 997644
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.97 E-value=0.89 Score=45.35 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.++-.++|.++|..|+.-..+||++ .+-++++|.-+|++.+++++|.+|+.+..++..+.|..-
T Consensus 43 nRa~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 43 NRALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred hhhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 3456678999999999999999997 566789999999999999999999999999999988753
No 221
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=83.85 E-value=12 Score=28.07 Aligned_cols=63 Identities=17% Similarity=0.035 Sum_probs=45.2
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-----C-CCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-----D-GSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-----~-~~~~~~~~~~~~~~~~~~~~N~a~c~lkl 380 (403)
|-..-+.|-.+=..|+-+.|+..|+++++.|.. . .....++|..++.+..+...|+..+--.+
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444558999999999999999954 1 13345788888888888888888765544
No 222
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.47 E-value=3.4 Score=40.54 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
+.+.|-.+...|++..|++.|.++.+|+.+ .+.-+..+.|+-.+-+-+++|.....+.++|-+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 446677888899999999999999998765 3445678889999999999999999999998765
No 223
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=83.23 E-value=3.6 Score=37.87 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
+...|-.+-+.|++..|...|.+|+++.... ...++|++.-++=.+++..|......+-..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4466888889999999999999999984332 346778888888888888877777666444
No 224
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=1.7 Score=41.92 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=42.0
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
|-=+|..|+|++|+..|+-+..- .+.+ ..+..|+|-|++-+|.|.+|-....++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~--~~~~-------------~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK--DDAP-------------AELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc--CCCC-------------cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 55679999999999999877762 1111 237899999999999999998766554
No 225
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.97 E-value=7 Score=42.04 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHHHH------------------------------
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQK------------------------------ 360 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~~~------------------------------ 360 (403)
++....+.-+.|=.+++.|+|.+|+.+|+.+|-.+.. +....+++.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 3677777888899999999999999999988765422 1111111110
Q ss_pred ----------HHHHHHHHhhhHHH-HHHHHccCHHHHHHHHHHHHhcccc
Q 015659 361 ----------LVKSLRVSCWLNSA-ACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 361 ----------~~~~~~~~~~~N~a-~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
.++++...+-+..| ..++|++++..|-..|.+.|++-|.
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence 12222222222222 3678999999999999999999874
No 226
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=82.87 E-value=3.4 Score=42.58 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=44.0
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
...|+|++|+..-.+....+. -+...+--+|.|++|+|++++|...+.+.|..+|.|.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~---------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQIL---------------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 345677776666555444321 1356778899999999999999999999999999885
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=82.56 E-value=4.4 Score=41.33 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=51.6
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
..|.-+..+|+.+.|+..|++|+.. + ...+++...|+..++.|++-+.+|.+|..+..+.++.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~--------q---~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES--------Q---SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc--------h---hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 5566777888889999999888842 1 22356677899999999999999999999999888754
No 228
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=82.35 E-value=5.7 Score=36.65 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=50.8
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC------------------
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD------------------ 382 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~------------------ 382 (403)
.-..|..+|+.++|..|+..|++.++.....+.. .-++..++.|++.++.
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~ 139 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH 139 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence 3467889999999999999999999975443322 2256667777765541
Q ss_pred HHHHHHHHHHHHhccccc
Q 015659 383 YQGAIELCSKVIVEREAA 400 (403)
Q Consensus 383 ~~~ai~~~~~aL~~dp~~ 400 (403)
-.+|+..+.+.++.-|.+
T Consensus 140 ~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 257889999999998865
No 229
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=82.19 E-value=9.3 Score=31.10 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+...|..+-..|++++|+...++++.-... .++...+...+|.|+..++++++|+..+-.+|.
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556788888999999999999999875322 122345667789999999999999998887764
No 230
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=81.99 E-value=3.1 Score=41.47 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=59.1
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCC-----------CChH----------HHHHHHHHHH--HhhhHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-----------FVDD----------EQKLVKSLRV--SCWLNSAA 375 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-----------~~~~----------~~~~~~~~~~--~~~~N~a~ 375 (403)
.-.-..+..+...|+++.|....+++++....+.. ...+ .+.+..+... .++..++.
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 33445678889999999999999999996433221 1111 1122233444 67778999
Q ss_pred HHHHccCHHHHHHHHH--HHHhcccccC
Q 015659 376 CCLKLKDYQGAIELCS--KVIVEREAAR 401 (403)
Q Consensus 376 c~lkl~~~~~ai~~~~--~aL~~dp~~~ 401 (403)
.++++++|++|..+.+ .+++.+|.+.
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 9999999999999999 6888888653
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.79 E-value=7.2 Score=38.47 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=38.7
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
....||.++-...|++||..+++-+.+... ........-.||+ ++.+|-.++++.+|+..+.+.|++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqe--------L~DriGe~RacwS-Lgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQE--------LEDRIGELRACWS-LGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334445554444455555444444444221 1111122233444 899999999999999999888765
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=81.64 E-value=1.5 Score=45.31 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=42.9
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
=..++|.+|+++|+.|+++ .+-+..++--+|.-+.+++++......=.+.|++.|++
T Consensus 86 R~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred hhhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 3557899999999999997 23335566667777778888877777777777777765
No 233
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=81.56 E-value=0.59 Score=33.24 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.4
Q ss_pred HHHccCHHHHHHHHHHHHhcccccCC
Q 015659 377 CLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 377 ~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
+++.|+|.+|+..++++++.+|.|..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~ 26 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE 26 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH
Confidence 47889999999999999999998853
No 234
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=80.96 E-value=2 Score=45.05 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=50.3
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
-..|-.+.+.++++.|...|++|+.+ ++-+...++|++.+|+++++-.+|.....+||..+-.|
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 35577788889999999999999986 23334578888888888888888888888888776443
No 235
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.80 E-value=1.9 Score=24.28 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.8
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
....|..++..++|+.|+..|+++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 456788999999999999999999985
No 236
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=80.66 E-value=6.5 Score=37.60 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=57.7
Q ss_pred ccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------CCCCChHHHH---------------HH
Q 015659 308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQK---------------LV 362 (403)
Q Consensus 308 ~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~~~~~~~~~---------------~~ 362 (403)
+++.++|+ ..+-+.|..+.+.|-|.+|-..|..-.+.-+. .... +.||+ ..
T Consensus 100 dlT~~qr~---lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 100 DLTFEQRL---LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-TREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred CCchHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCCccc
Confidence 33445444 34455688888889898888888654442110 0000 11222 12
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+-....+|.-+|+.++-..++++|+....+||+-||.+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv 214 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV 214 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce
Confidence 344556788888888888899999999999999988764
No 237
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.30 E-value=2.4 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.094 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHccCHHHHHHHHH
Q 015659 369 CWLNSAACCLKLKDYQGAIELCS 391 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~ 391 (403)
+++|+|..++.+|++.+|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67899999999999999998765
No 238
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.93 E-value=3.4 Score=27.16 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.3
Q ss_pred hhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 370 WLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 370 ~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
.+|+|.+|+++|+.+.|..-.+++|.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47999999999999999999999995
No 239
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=78.92 E-value=4.1 Score=44.61 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=46.4
Q ss_pred HhhHhh-hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 324 EGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 324 ~Gn~~f-k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
.+-..| +..++ .++..|..++.-.-. ..-++..+|.||=|++++++|+..++++|++||.|+.
T Consensus 88 ~~l~~~~~~~~~-~~ve~~~~~i~~~~~---------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 88 NLIDSFSQNLKW-AIVEHICDKILLYGE---------------NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE 151 (906)
T ss_pred hhhhhcccccch-hHHHHHHHHHHhhhh---------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH
Confidence 344444 44577 666666655543211 1227888999999999999999999999999999975
No 240
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=78.60 E-value=7.6 Score=35.86 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH-ccCHHHHHHHHHHHHh
Q 015659 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVIV 395 (403)
Q Consensus 334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk-l~~~~~ai~~~~~aL~ 395 (403)
-++|...|++|+.+....-+++ ++++..+.+|.+..|.. +++..+|+..+.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt-------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4588999999999865533334 78889999999999887 4889999988887764
No 241
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=5.2 Score=40.01 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhcc----CCCCChHH---------------HHHHHHHHHHhhhHHHHHHHHccC
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSE----DGSFVDDE---------------QKLVKSLRVSCWLNSAACCLKLKD 382 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----~~~~~~~~---------------~~~~~~~~~~~~~N~a~c~lkl~~ 382 (403)
--.|.++..-+|-..|+..|++|+++... +.+..+.. ..++++.-..++.=|+.||.|+++
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 35699999999999999999999998643 22333321 133455556688889999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 015659 383 YQGAIELCSKVIVEREA 399 (403)
Q Consensus 383 ~~~ai~~~~~aL~~dp~ 399 (403)
..+||+++.+|+...-.
T Consensus 448 ~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999887543
No 242
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.47 E-value=13 Score=33.96 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhHhhhc--CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659 316 EAAGRKKEEGNLLFKN--GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (403)
Q Consensus 316 ~~~~~~k~~Gn~~fk~--~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a 393 (403)
..+.+.+..=-+.|.. .++++|+..|++|-+++.... ......+|++-.|.-.-.+++|.+||.-++++
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555455556644 489999999999999875522 24455678888888888899999999998887
Q ss_pred Hhc
Q 015659 394 IVE 396 (403)
Q Consensus 394 L~~ 396 (403)
-..
T Consensus 181 a~~ 183 (288)
T KOG1586|consen 181 ARS 183 (288)
T ss_pred HHH
Confidence 543
No 243
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=8.3 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhc
Q 015659 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (403)
Q Consensus 313 e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 349 (403)
.-++.+..+-..+.+.=+++||++|++.|+.|++|+-
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 3456666777777778899999999999999999974
No 244
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=76.32 E-value=4.1 Score=42.97 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC----------------hH------HHHHHHHHHHHhhhHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------------DD------EQKLVKSLRVSCWLNSAAC 376 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~----------------~~------~~~~~~~~~~~~~~N~a~c 376 (403)
..+...|-.+-.+|++.+|...|.-|+.+ ++++... .+ +.-++++.+...+.+++-+
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~l-dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALAL-DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567788888889999999999999885 2211110 01 2235677778899999999
Q ss_pred HHHccCHHHHHHHHHHHHhcccccC
Q 015659 377 CLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 377 ~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+.++|+.++|-.++..|+++++.|.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999998874
No 245
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.21 E-value=12 Score=37.22 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-------------CCCCChHHHHHHHHH-------HHHhhhHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-------------DGSFVDDEQKLVKSL-------RVSCWLNS 373 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-------------~~~~~~~~~~~~~~~-------~~~~~~N~ 373 (403)
+.+.+.+.-.+|--.+-+|||.+|.+.-.++-+..+. ..+..+.-...+... ......-.
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4455666666677777778888777666555443110 000000000000000 01111223
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 374 AACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 374 a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+..++..++++.|+...+++++.+|.|.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~ 187 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHP 187 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 5567777777777777777777777664
No 246
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=75.36 E-value=5.4 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+|.-++-+-+-.++|.+|+.++.++|++-
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56777888888889999999999999864
No 247
>PRK10941 hypothetical protein; Provisional
Probab=73.43 E-value=5.6 Score=37.32 Aligned_cols=39 Identities=8% Similarity=-0.060 Sum_probs=35.2
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+.+....+.|+=.+|++.++|..|+..++.+|.++|.+.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH
Confidence 556778899999999999999999999999999999874
No 248
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.21 E-value=6.1 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=23.2
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+-..|.-+++.|++.+|+..|++.++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345688889999999999999999885
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.91 E-value=9.4 Score=40.87 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=29.2
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+.-.+..|+.+|++|+|+.|...|-++|.+++.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 444678899999999999999999999998866
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=72.11 E-value=17 Score=30.67 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
...+.+++.++...+.+..|+....+++...|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 345777888888888888888888888877764
No 251
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=70.91 E-value=15 Score=36.52 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHHHHHHH------H-HHhhhHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQKLVKSL------R-VSCWLNS 373 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~~~------~-~~~~~N~ 373 (403)
+...+.+.-.+|--.+.+|+|..|.+.-.++.+...... +..+.-...+... . ..+..-+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 455667777788888999999999999988887532100 0000000111110 0 1223334
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 374 AACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 374 a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
|..++..++++.|+...++.++.+|.|..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~ 188 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKE 188 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 77788889999999999999999888753
No 252
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=70.35 E-value=13 Score=36.93 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=50.1
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+...|.-+++.++|.+|...|++++..- + + ...+.-+|.++.++++.++|.++++++|.+-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~-P----~-----------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR-P----D-----------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-C----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3456888899999999999999999961 1 1 1245569999999999999999999998764
No 253
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.25 E-value=8.9 Score=36.77 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=52.2
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHHhcc----------CCCCChHHH--------HHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQ--------KLVKSLRVSCWLNSAACCLKLKDYQG 385 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~~~~~~~~--------~~~~~~~~~~~~N~a~c~lkl~~~~~ 385 (403)
.|.=+++.|-+.+|.+.++.++..... ....++.+. -...+..+..++-+|-.|-.|+++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 455666667777777666666654321 011111111 11234457788999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 015659 386 AIELCSKVIVEREAA 400 (403)
Q Consensus 386 ai~~~~~aL~~dp~~ 400 (403)
|++.+..||.++|.|
T Consensus 309 a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPIN 323 (478)
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999999987
No 254
>PRK04841 transcriptional regulator MalT; Provisional
Probab=69.55 E-value=21 Score=39.32 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=39.1
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
|..++..|++..|...|++++........ ......++.|+|.+++..|++..|...+.+++++
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDV---------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcc---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344455555555555555544322110 1112346688999999999999999999998875
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.88 E-value=16 Score=35.16 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC---CCC----------hHHHHHHHHH----------HHHhhhHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG---SFV----------DDEQKLVKSL----------RVSCWLNSAA 375 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---~~~----------~~~~~~~~~~----------~~~~~~N~a~ 375 (403)
+++...+-.+|-+|++.+|...+.|.++-...+- .++ +--...+.++ ..=++-=.|-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 5666777888999999999999999887543210 000 0011112222 2223344789
Q ss_pred HHHHccCHHHHHHHHHHHHhccccc
Q 015659 376 CCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 376 c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
|+...|-|.+|-+.++++|+++|-+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcc
Confidence 9999999999999999999999865
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=66.92 E-value=31 Score=33.64 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=60.2
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC-------CCC----ChH----H-------------HHHHHHHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-------GSF----VDD----E-------------QKLVKSLRVS 368 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~----~~~----~-------------~~~~~~~~~~ 368 (403)
++.+..+.|..+|...++.+|+..+++.+.-++.. ... .+. + ..+--.+...
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999877430 000 010 0 0111334556
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
.|+|+|-.+-++.+|.+++.+|+.-|.+-
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lp 113 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLP 113 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 89999999999999999999999999874
No 257
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.18 E-value=9.5 Score=24.17 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.4
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVS 349 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 349 (403)
..|.-..-+.+|..|+.-|++|+.+..
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 346666788999999999999999843
No 258
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=65.82 E-value=18 Score=34.64 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=45.0
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..|+-....|+|++|++.|+.+++. + ..+..-...-+..||-++|+..+.+...+++.+..++.+
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQ---n-----------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQ---N-----------PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHh---C-----------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 4466667777777777777776664 1 333444556677888888888888888888887776653
No 259
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=64.53 E-value=13 Score=38.31 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=51.6
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+.-+-..|+|.+|+....+||.. .+..+-+|.-.|-++-..|++.+|....++|-.+|+.++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 34444678899999999999986 333456899999999999999999999999999998875
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.83 E-value=21 Score=33.46 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=49.3
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVE 396 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~ 396 (403)
-++|++..|...|.||-.++.. .+++. -......++|.+...++.+ ++..|+...++|+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~---~~~~~----~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS---LDPDM----AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc---CCcHH----HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4789999999999999998742 22222 2345678999999999999 999999999988776
No 261
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=61.77 E-value=18 Score=36.02 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=45.9
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+.-++..++-.+|++...++++... ....++.-.|..+++.++++.|+..+.++.++.|.+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p---------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENP---------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4444555666778888777775411 114466778899999999999999999999999975
No 262
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.67 E-value=18 Score=31.74 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc----------cCHHHHHHHHHHHHhccccc
Q 015659 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl----------~~~~~ai~~~~~aL~~dp~~ 400 (403)
|+.|.+.|+.+... ++.....++|=+.+++.| +.+.+|+.-.++||.++|..
T Consensus 7 FE~ark~aea~y~~---------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHh---------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 66677777776665 222233444544444444 35678899999999999974
No 263
>PRK04841 transcriptional regulator MalT; Provisional
Probab=61.63 E-value=30 Score=38.14 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=42.1
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
..|..++..|++..|...+.+++.......... ......++.++|.++...|++.+|...+.+++.+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 346677899999999999999999865422110 0111123445566666666666666666666554
No 264
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.16 E-value=24 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=37.0
Q ss_pred cccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 307 ~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+..+...-+..+..+...|..+++.|+.+.|.-.|.+.+.+++.
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44556667888999999999999999999999999999999854
No 265
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.30 E-value=23 Score=32.53 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+++-.++|..+|+.+...-.+|+++ .+..++.+.=+.+|++..+.|..||....+|+.+
T Consensus 48 tnralchlk~~~~~~v~~dcrralql---------------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQL---------------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhc---------------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 45666778888888888888888887 5556778888999999999999999999999554
No 266
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.17 E-value=13 Score=34.66 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.9
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
.+.+-+|.|++.+++|.+|......||..+++++
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 4677799999999999999999999999998764
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=57.39 E-value=29 Score=34.94 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=49.2
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
-.|..+.-.+++..|...+.+|+.+ .+.....++=+|..+.-.|+..+|+.+.+++|+++|--+
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L---------------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIH---------------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhc---------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 3455555666788999999999886 223345667778888888999999999999999999643
No 268
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=56.72 E-value=22 Score=39.10 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=51.5
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC-HHHHHHHHHHHHhcccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVIVEREA 399 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~-~~~ai~~~~~aL~~dp~ 399 (403)
.-..+.+...+++|+.|+..-+++++. ++-+..++.=++.++.-++. .++|-.++-.|.++||.
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~---------------dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKE---------------DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhc---------------CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChh
Confidence 344588889999999999999999996 22223344456677788887 99999999999999998
Q ss_pred cC
Q 015659 400 AR 401 (403)
Q Consensus 400 ~~ 401 (403)
|.
T Consensus 70 nl 71 (1238)
T KOG1127|consen 70 NL 71 (1238)
T ss_pred hh
Confidence 74
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=56.15 E-value=24 Score=35.81 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=58.1
Q ss_pred ccCchHHHHHHHHHHHHhh---Hhh------hcCcHHHHHHHHHHHHHHhccCCCCCh------HHHH----HHHHHHHH
Q 015659 308 EMNNQGKIEAAGRKKEEGN---LLF------KNGKYERAGKKYNKAADCVSEDGSFVD------DEQK----LVKSLRVS 368 (403)
Q Consensus 308 ~m~~~e~~~~~~~~k~~Gn---~~f------k~~~~~~A~~~Y~~al~~l~~~~~~~~------~~~~----~~~~~~~~ 368 (403)
+-+++.+++.|.+--+.-. .+| ....-.+|.+.|++|++.-+..-..+. ..++ .--....-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 3366777777665443322 222 233467888889999887654222111 0111 11122344
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
+...+|.|.-|+|+-++||+.+.+.|+..|.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 6677999999999999999999999988875
No 270
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.83 E-value=40 Score=35.09 Aligned_cols=75 Identities=20% Similarity=0.127 Sum_probs=51.3
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHH--HHHHHHHHHHhhhHHH-HHHHHccCHHHHHHHHH
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDE--QKLVKSLRVSCWLNSA-ACCLKLKDYQGAIELCS 391 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~--~~~~~~~~~~~~~N~a-~c~lkl~~~~~ai~~~~ 391 (403)
..+.++.|+.+.+++++..|..++.+|.++-.. .....+.+ ......-+..-.+|+| .||++++++++|++...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 346788999999999999999999999875321 11112211 2222333444567777 69999999999987654
Q ss_pred H
Q 015659 392 K 392 (403)
Q Consensus 392 ~ 392 (403)
+
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 4
No 271
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.03 E-value=21 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=22.9
Q ss_pred hHHHHHHHHccCHHHHHHH--HHHHHhccccc
Q 015659 371 LNSAACCLKLKDYQGAIEL--CSKVIVEREAA 400 (403)
Q Consensus 371 ~N~a~c~lkl~~~~~ai~~--~~~aL~~dp~~ 400 (403)
.-+|.++...|++++|++. ..-+..++|-|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3468999999999999999 55787777754
No 272
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=54.75 E-value=30 Score=34.92 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=29.3
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.-+..=++..+++.++.++|+....++|.++|.+
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 3355557788999999999999999999999986
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=54.32 E-value=31 Score=33.73 Aligned_cols=67 Identities=24% Similarity=0.217 Sum_probs=47.1
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
|.-+-.-++|.+|+-.-.+|..+.++..- .+|. -..+...++.||.++-++|+..+|.+.|++|.++
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l---~d~~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGL---KDWS--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCc---Cchh--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 43344667777887777778777655321 1111 3455667788999999999999999999999443
No 274
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.18 E-value=61 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=20.9
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
.+..+|.+|||.+|++.-+..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH
Confidence 577899999999999999888775
No 275
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.67 E-value=55 Score=28.45 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCC---CC----hHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGS---FV----DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~---~~----~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..=.++.++|+|..|+.-|.+|..++..... .- .+-...+..++..++..+..+. ....+.....+..|+
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll~ 167 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLLE 167 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHh
Confidence 3445567899999999999999999865421 11 1222334444555555444444 245556666677788
Q ss_pred cccc
Q 015659 396 EREA 399 (403)
Q Consensus 396 ~dp~ 399 (403)
++|.
T Consensus 168 L~~~ 171 (182)
T PF15469_consen 168 LNVE 171 (182)
T ss_pred CCCC
Confidence 7764
No 276
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.41 E-value=15 Score=36.60 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 341 YNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 341 Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
|..|++.|+...-....-...+-.-.+++++.++-|||-+++|.+|+...+.+|-
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777655221111122334556678999999999999999999999998874
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.27 E-value=48 Score=29.47 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~ 391 (403)
..-+.+..++-.++|.+|...-+.++..- .| ..+...+-+++|-+++.++.++.|+...+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t------~D------e~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT------KD------ENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc------hh------HHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 34466788889999999998888887641 11 33445566777777777777777766443
No 278
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=52.55 E-value=1.2e+02 Score=31.48 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=49.2
Q ss_pred HHHhhHhhhcCc---HHHHHHHHHHHHHHhcc-----------------CCCCChHHHHHHHHH-H-----------HHh
Q 015659 322 KEEGNLLFKNGK---YERAGKKYNKAADCVSE-----------------DGSFVDDEQKLVKSL-R-----------VSC 369 (403)
Q Consensus 322 k~~Gn~~fk~~~---~~~A~~~Y~~al~~l~~-----------------~~~~~~~~~~~~~~~-~-----------~~~ 369 (403)
--+|..++...+ +.+|+.++++|++.=.. ....++.....+... . ..+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 345666665444 88999999999984210 111112222111111 1 133
Q ss_pred hhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659 370 WLNSAACCLKLKDYQGAIELCSKVIVEREA 399 (403)
Q Consensus 370 ~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~ 399 (403)
|.=+|..++..++|.+|...+++||+++|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 455677888899999999999999999994
No 279
>PRK10941 hypothetical protein; Provisional
Probab=52.25 E-value=49 Score=31.07 Aligned_cols=65 Identities=12% Similarity=-0.040 Sum_probs=49.8
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
..=+.+.++++|++|+++-...+.+...++ .++ -=++.+|.+++.|..|+.+.+.-|+.-|.+.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-------~e~--------RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDP-------YEI--------RDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-------HHH--------HHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 334456799999999999999998732221 111 22888999999999999999999998887643
No 280
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.91 E-value=26 Score=38.67 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.9
Q ss_pred CCCeEEEcCCCCcch
Q 015659 234 EQPLEFITDEEQVIA 248 (403)
Q Consensus 234 ~~p~~~~lG~~~v~~ 248 (403)
|+.+.+.+++.+++|
T Consensus 321 GQVLsv~v~e~~IVp 335 (1666)
T KOG0985|consen 321 GQVLSVLVNEQNIVP 335 (1666)
T ss_pred ceEEEEEecCcceeh
Confidence 445555555555553
No 281
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.58 E-value=93 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
++.-+|-.|+.+++|.+|..+.++++-+.|-|
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 45568899999999999999999999999976
No 282
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=49.90 E-value=25 Score=33.38 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=44.7
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHH-HHHHHHHHhccc
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA-IELCSKVIVERE 398 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~a-i~~~~~aL~~dp 398 (403)
.+...+.-....|+|++|.....+|+.. ++....++.|++.|..-+|+..++ -.+.++.-..+|
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~---------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEK---------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3556788889999999999999988653 112234789999999999998544 445555444555
Q ss_pred c
Q 015659 399 A 399 (403)
Q Consensus 399 ~ 399 (403)
.
T Consensus 268 ~ 268 (290)
T PF04733_consen 268 N 268 (290)
T ss_dssp T
T ss_pred C
Confidence 3
No 283
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=49.45 E-value=27 Score=19.81 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.|+++-.+|.+.+++++|..-.++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4778889999999999999988877653
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=49.05 E-value=81 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHccCHHHHHHHHHHHHhccc
Q 015659 376 CCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 376 c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
++..++++..|+....+++..+|
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 78888888888888888877665
No 285
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=45.99 E-value=15 Score=34.71 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=29.8
Q ss_pred hhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 370 WLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 370 ~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
+.=|+.+|+.++++..|...+.+|++++|.|+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH
Confidence 344899999999999999999999999999975
No 286
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.95 E-value=45 Score=34.65 Aligned_cols=66 Identities=23% Similarity=0.186 Sum_probs=53.3
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
+-+.+|-+.+.+-+-.|...-.+++.++.+.+ ..++-++.++|-+++-+.|+++.+.||.++|.|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sep---------------l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEP---------------LTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCc---------------hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 45668888888888888888888888763322 255667888999999999999999999999987
Q ss_pred C
Q 015659 401 R 401 (403)
Q Consensus 401 ~ 401 (403)
.
T Consensus 710 ~ 710 (886)
T KOG4507|consen 710 P 710 (886)
T ss_pred h
Confidence 4
No 287
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.77 E-value=54 Score=20.36 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHH--HHHHH
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYN--KAADC 347 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~--~al~~ 347 (403)
.+...|-.++..|+|++|+..|+ -+..+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34556888999999999999954 55443
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.50 E-value=59 Score=24.83 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
....+.+|.+++..++|..|+..+-++++.|++..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 45778899999999999999999999999998764
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.31 E-value=57 Score=29.14 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=40.0
Q ss_pred HhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHH
Q 015659 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387 (403)
Q Consensus 327 ~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai 387 (403)
.+|-..+-.+|+..|.+++.+...+..++ ..++.=||..+.++++++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhh
Confidence 45668899999999999999876654444 446677899999999999884
No 290
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=45.13 E-value=57 Score=30.02 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=40.0
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhcc--CC-------CCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSE--DG-------SFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~--~~-------~~~~~~~~~~~~~~~~~~~N~a~c~lkl 380 (403)
=+++|.. ++..+...|..|+.+|+. .. ..+++|...+..+...+...+..+.-|+
T Consensus 174 ~~El~g~-~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~~Lr~k~ 237 (238)
T PF12063_consen 174 VDELFGE-NLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLSALRKKM 237 (238)
T ss_pred HHHHhCc-CHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3555633 899999999999999965 22 2566777888888777777777665543
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=1.1e+02 Score=28.47 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=21.7
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+++-.+.++-+=+.|++.|++++.+++.
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 4556667777888889999999988765
No 292
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=44.28 E-value=72 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
..++-++.|....+.|..++++|++..|+.++.-|--+|+.
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLDA 67 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLDA 67 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999888777643
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=43.91 E-value=31 Score=34.79 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=30.0
Q ss_pred HHHHHHhhhHHHHHHHHcc---------CHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLK---------DYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~---------~~~~ai~~~~~aL~~dp~~~ 401 (403)
++....+|.=+|-||+.+. +-.+|+..+++|+++||.|+
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 4455677788888888762 34568889999999999986
No 294
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.85 E-value=83 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.8
Q ss_pred HhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 324 EGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
.+-.+||.|+|.+|.+.-..+|+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 466789999999999998888886
No 295
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=43.43 E-value=49 Score=35.35 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=16.0
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
..|..+-+.|+.++|..+|+-|+.+
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhh
Confidence 3455556666777777777666664
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=42.50 E-value=72 Score=32.54 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~ 389 (403)
+..|.-+-|.|+.++|++.|+..++...... ...++.|+.-|+|-++.|.++-.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~-------------~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLD-------------NLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccc-------------hhhHHHHHHHHHHhcCCHHHHHHH
Confidence 3456666788999999999999888643211 234889999999999988776543
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=42.41 E-value=53 Score=26.30 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=39.0
Q ss_pred hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
|.-.|..-+..|+.+|+++..+ .+....++.++|.=+=-...|++|+.-|.++|.+.
T Consensus 52 n~d~k~~yLl~sve~~s~a~~L---------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 52 NPDVKFRYLLGSVECFSRAVEL---------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred CchHHHHHHHHhHHHHHHHhcc---------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 3334444556788888888886 22235566667655444567999999999999864
No 298
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=42.24 E-value=54 Score=18.98 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
.|+.+..++.+.++++.|....+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578888999999999999888777654
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.19 E-value=1.1e+02 Score=29.43 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=56.2
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCC---CChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGS---FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~---~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
|..-.+......|.+|++.|..... ....+...+....+.++++++.-..+.|-...|+......|+++
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 6677899999999999999865221 22344556677788899999999999999999999999999876
No 300
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=40.58 E-value=27 Score=38.38 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=54.4
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA 400 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~ 400 (403)
.+|--+.+.+++..|+.-++.|++. .+.-..+..-+..+|...|.+..|++..++|..++|.+
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3677778899999999999999997 33445688889999999999999999999999999964
No 301
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.62 E-value=1.6e+02 Score=29.06 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHHHHHHHHH
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVI 394 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai~~~~~aL 394 (403)
.+.....++..+|+.++|..|.+.+...+.-+... +. ...+.++|.+|..=. +|.+|....+..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~-----------~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGR-----------EE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-----------hh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556667889999999999999999888742211 11 457788888888744 5788888777766
Q ss_pred hc
Q 015659 395 VE 396 (403)
Q Consensus 395 ~~ 396 (403)
..
T Consensus 197 ~~ 198 (379)
T PF09670_consen 197 KR 198 (379)
T ss_pred HH
Confidence 53
No 302
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=38.50 E-value=64 Score=27.48 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
........+|.+++.|+.+.|+..-+-+-.-+......- .--...-..|+|+.+++.+++.+|......|++
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~l-------PL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALL-------PLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEE-------EHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeC-------CHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 455667789999999999999876544433322200000 001133557899999999999999988888764
No 303
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.71 E-value=1.4e+02 Score=26.83 Aligned_cols=68 Identities=18% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
.+..++..-...-+.+|+..|.+|+..-+... ...++ ..+++=+|..+.++|++++|+....+++..-
T Consensus 128 yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~~~~--------~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 128 YRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EGMDE--------ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CCchH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445544444456677777777776533211 11111 1244458899999999999999999998764
No 304
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=37.01 E-value=40 Score=35.27 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
|+-=+++.+=.-++|++||+.++.||.++|.|-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 666677777778899999999999999999883
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.68 E-value=1.8e+02 Score=27.74 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=48.1
Q ss_pred CcCccccCchHHHHHH--HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 015659 303 EKVPWEMNNQGKIEAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (403)
Q Consensus 303 ~~~~~~m~~~e~~~~~--~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl 380 (403)
.-..|.-+..+.++.. .-+-..+..+.++|+|..|+..-++++.+ +++....+-=+-+.+.++
T Consensus 262 ~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl---------------dpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 262 ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL---------------DPLSEQDNKGLMASLATL 326 (361)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---------------ChhhhHHHHHHHHHHHHh
Confidence 3345665555655442 23345566778999999999999999997 333333334445667777
Q ss_pred cCHHHHHHHHHH
Q 015659 381 KDYQGAIELCSK 392 (403)
Q Consensus 381 ~~~~~ai~~~~~ 392 (403)
|+--+|++++++
T Consensus 327 gD~is~~khyer 338 (361)
T COG3947 327 GDEISAIKHYER 338 (361)
T ss_pred ccchhhhhHHHH
Confidence 876666666544
No 306
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.39 E-value=82 Score=17.96 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.|+-+-.+|.+.+++++|+....+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4566778899999999999999887553
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.97 E-value=1.6e+02 Score=28.88 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=51.0
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--CCCC-------C------hHHHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSF-------V------DDEQKLVKSLRVSCWLNSAACCLKLKDY 383 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--~~~~-------~------~~~~~~~~~~~~~~~~N~a~c~lkl~~~ 383 (403)
..+-+.+.-+-..|++..|...-++||-.++. .+.+ + +-...+-+.+...+ ....+...+.|-|
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal-~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL-FRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH-HHHHHHHHhcCcH
Confidence 34445555556666777777777777666542 1111 1 11122223444444 4466788899999
Q ss_pred HHHHHHHHHHHhccccc
Q 015659 384 QGAIELCSKVIVEREAA 400 (403)
Q Consensus 384 ~~ai~~~~~aL~~dp~~ 400 (403)
.-|++.|+-.|.+||.+
T Consensus 120 rTAlE~~KlLlsLdp~~ 136 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDE 136 (360)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999999984
No 308
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.81 E-value=1.4e+02 Score=30.18 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHhhHhhhcCcHHHHHHHHHHHHHH-----hccCCCCChHHHHHHH-HHHHHhhhHH-HHHHHHccCHHHHHHHHH
Q 015659 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC-----VSEDGSFVDDEQKLVK-SLRVSCWLNS-AACCLKLKDYQGAIELCS 391 (403)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~-----l~~~~~~~~~~~~~~~-~~~~~~~~N~-a~c~lkl~~~~~ai~~~~ 391 (403)
.+.+..|..+.+.|+++-|..+|+++-++ |....+ +.+-.+++- .-...--.|. -+|++.+++.++|++-..
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g-~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTG-DREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT--HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhC-CHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHH
Confidence 36788999999999999999999987553 211111 111111111 1111112333 368899999999887554
Q ss_pred H
Q 015659 392 K 392 (403)
Q Consensus 392 ~ 392 (403)
+
T Consensus 427 ~ 427 (443)
T PF04053_consen 427 E 427 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 309
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.55 E-value=2.8e+02 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHhhHhh-hcCcHHHHHHHHHHHHHHhccCC
Q 015659 323 EEGNLLF-KNGKYERAGKKYNKAADCVSEDG 352 (403)
Q Consensus 323 ~~Gn~~f-k~~~~~~A~~~Y~~al~~l~~~~ 352 (403)
+++-..| ..++|++|..+-.+|++..+...
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnr 65 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNR 65 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 3344444 45677777777777777665533
No 310
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=32.50 E-value=29 Score=28.01 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=16.3
Q ss_pred cCCCccCCCceeecCCCeEEEE
Q 015659 31 SAAPLKVGEERGLGNSGIKKKL 52 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~~g~~~~v 52 (403)
+...+...++|..+++||+|+|
T Consensus 103 fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 103 FLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHHcCCCCCEECCCCCeeeC
Confidence 5555667789999999999997
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=1.7e+02 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=18.5
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+-..||+.+-.+|+++-++|++++..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHh
Confidence 33557777778888888888777644
No 312
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.29 E-value=1.5e+02 Score=29.03 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC
Q 015659 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG 352 (403)
Q Consensus 313 e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 352 (403)
.+-..+.++-..|+.+++.++|.+|...|+.|..++...+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~ 75 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY 75 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4566788899999999999999999999999999876543
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=32.10 E-value=36 Score=30.93 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=56.5
Q ss_pred HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
.+....=.|--+..+|+|..|...|...+++ ++-..=.++|+++.+.--++|.-|..+..+--+-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---------------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhcc---------------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3455556788888999999999999888886 2233448899999999999999999999988888
Q ss_pred ccccC
Q 015659 397 REAAR 401 (403)
Q Consensus 397 dp~~~ 401 (403)
||.+.
T Consensus 163 D~~DP 167 (297)
T COG4785 163 DPNDP 167 (297)
T ss_pred CCCCh
Confidence 88763
No 314
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=85 Score=29.39 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..+...+..|+=+.++..++|..|.....+.|.++|.++
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp 215 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP 215 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh
Confidence 566778899999999999999999999999999999875
No 315
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=30.60 E-value=2.5e+02 Score=21.58 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=30.0
Q ss_pred hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc
Q 015659 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381 (403)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~ 381 (403)
+.++=.+|.|..|...|..++..... +.+. ..+..++..|..|-+
T Consensus 7 Ae~LE~kGl~RRAA~rW~evm~~~~~-----~~eR-------e~~~~RR~~Cl~kak 51 (90)
T PF06069_consen 7 AEELEAKGLWRRAATRWLEVMDLAET-----DKER-------EWIAQRREYCLRKAK 51 (90)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHcCC-----HHHH-------HHHHHHHHHHHHhcc
Confidence 44555778999999999999998543 2222 234555666666644
No 316
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.82 E-value=1.7e+02 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=46.2
Q ss_pred hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
=-+.|+...|.+.|++|++.+-. +.+...++.--|.--..+++|..|..-+.-||..=|.++
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~------------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGD------------DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34788999999999999998644 112223455455556677889999999999998888774
No 317
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.06 E-value=1.1e+02 Score=31.21 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 359 ~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
.+.++.++..++.|+|-+-+.++++-.|+..+++.|++.
T Consensus 501 ~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~ 539 (696)
T KOG2471|consen 501 FEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA 539 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh
Confidence 467889999999999999999999999999999999874
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.69 E-value=31 Score=33.36 Aligned_cols=66 Identities=15% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER 397 (403)
Q Consensus 318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d 397 (403)
+.-...+++.+.+.++...|++-|-.|+.+ +++.. +. .-+.|+| +--+++|.+|-++...|+++|
T Consensus 148 a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~Dsa---------~~---ykfrg~A--~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 148 AILYAKRASVFLKLKKPNAAIRDCDFAIEI-NPDSA---------KG---YKFRGYA--ERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhcccccceeeeccCCchhhhhhhhhhcc-Ccccc---------cc---cchhhHH--HHHhhchHHHHHHHHHHHhcc
Confidence 344556799999999999999999999996 22210 11 1223333 556789999999999998776
Q ss_pred c
Q 015659 398 E 398 (403)
Q Consensus 398 p 398 (403)
-
T Consensus 213 ~ 213 (377)
T KOG1308|consen 213 Y 213 (377)
T ss_pred c
Confidence 3
No 319
>PRK12450 foldase protein PrsA; Reviewed
Probab=28.56 E-value=1.2e+02 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=23.9
Q ss_pred eEEEcCCCCcchHHHHHHcccCCCcEEEEE
Q 015659 237 LEFITDEEQVIAGLDRVAATMKKEEWAIVT 266 (403)
Q Consensus 237 ~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~ 266 (403)
+.|.-|++.++|.|..++..|++|+.+.++
T Consensus 193 ~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 193 YTFDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred ccccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 334445567999999999999999997655
No 320
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=28.27 E-value=2.7e+02 Score=27.30 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=43.9
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHH-----HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV-----KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~-----~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..++-..++...|++|.+.+......-..+|... .-.....|+..|......+++.+||..+..|.+
T Consensus 205 liaKLA~q~a~~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 205 LISALAYETAKLFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 3445566777889999998875332223445443 333444566666666667789999998888865
No 321
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.82 E-value=2e+02 Score=26.42 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 336 RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 336 ~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+...++|+..+..... ..+...+...+|.-|+++|+|++|+...+.++.
T Consensus 156 ~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566666665543221 445566788899999999999999999988853
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=27.60 E-value=4.3e+02 Score=29.15 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred HHHHhhHhh-hcCcHHHHH------HHHHHHHHHhccCC-CCChHHHH---------HHHHHHHHhhhHHHHHHHHccCH
Q 015659 321 KKEEGNLLF-KNGKYERAG------KKYNKAADCVSEDG-SFVDDEQK---------LVKSLRVSCWLNSAACCLKLKDY 383 (403)
Q Consensus 321 ~k~~Gn~~f-k~~~~~~A~------~~Y~~al~~l~~~~-~~~~~~~~---------~~~~~~~~~~~N~a~c~lkl~~~ 383 (403)
+..+.-++| ...+|++|. +.|+.|+.++...+ ..+++-.+ --...+..++--+|-|.+++|.|
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 344555555 445677665 55788887764321 22221100 01233445666788888888888
Q ss_pred HHHHHHHHHH
Q 015659 384 QGAIELCSKV 393 (403)
Q Consensus 384 ~~ai~~~~~a 393 (403)
..|-+-+++|
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 8887766654
No 323
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.50 E-value=1.4e+02 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=11.6
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHH
Q 015659 371 LNSAACCLKLKDYQGAIELCSKVI 394 (403)
Q Consensus 371 ~N~a~c~lkl~~~~~ai~~~~~aL 394 (403)
.|.|+++=..+.+++|+.++++++
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHH
Confidence 344444444455555555555443
No 324
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.37 E-value=2.7e+02 Score=27.61 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=44.8
Q ss_pred HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHHHHHHH
Q 015659 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSK 392 (403)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai~~~~~ 392 (403)
.....+..+|++.+|..|.+.|..++.-.-+ .+ ..-...++-++|.||..=. +|.+|....++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-----~~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLS-----AV-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccC-----hh-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3344677899999999999999998875221 11 1234567788888888755 57778777764
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=25.98 E-value=1.8e+02 Score=29.88 Aligned_cols=51 Identities=22% Similarity=0.379 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCCC
Q 015659 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV 403 (403)
Q Consensus 338 ~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~~ 403 (403)
...|++|..-+..+ +++.+|-.+-.-|-+.+.+.-.-|.++|.++|.|+++
T Consensus 91 v~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dL 141 (568)
T KOG2396|consen 91 VFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDL 141 (568)
T ss_pred HHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchh
Confidence 35677777765433 4566766655555566999999999999999999874
No 326
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=1.8e+02 Score=27.33 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CC-----------CCChHH------------HHHH--HHHHHHhhhHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE-DG-----------SFVDDE------------QKLV--KSLRVSCWLNSA 374 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~-----------~~~~~~------------~~~~--~~~~~~~~~N~a 374 (403)
.....+-+.--|.|.-....|.+.++..+. ++ .+.+.+ ..++ -......+-|+|
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344566666667777777777777774311 00 000100 0011 122445788999
Q ss_pred HHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 375 ACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 375 ~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
..|+-.++|..|....++.++.||.|+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCch
Confidence 999999999999999999999999875
No 327
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=25.69 E-value=54 Score=23.60 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=15.9
Q ss_pred HHHHhhHhhhcCcHHHHHHHH
Q 015659 321 KKEEGNLLFKNGKYERAGKKY 341 (403)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y 341 (403)
+.++=|++|..|+|++|.+.=
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~A 29 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVA 29 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 455668999999999998764
No 328
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=21 Score=34.60 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
+.-..+.|+.+++.++++.++++|+.+...++..+|.++
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 334567899999999999999999999999999999875
No 329
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=25.13 E-value=1.4e+02 Score=24.35 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHh
Q 015659 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (403)
Q Consensus 311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l 348 (403)
.+++-....+--+.|..+...|++..|+.++-+|+..+
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 55566667777788999999999999999999999974
No 330
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=24.85 E-value=1.4e+02 Score=19.95 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.7
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCC
Q 015659 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG 99 (403)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~ 99 (403)
.+.+.|+.+.+..+.++.+|..+.. .||.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 4578899999999999988877643 5677766643
No 331
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=24.27 E-value=1.1e+02 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=18.8
Q ss_pred chHHHHHHcccCCCcEEEEEEcCC
Q 015659 247 IAGLDRVAATMKKEEWAIVTINHE 270 (403)
Q Consensus 247 ~~gl~~~l~~m~~Ge~~~v~i~~~ 270 (403)
-+.+..|+.-|..||++.|++.+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 477899999999999999998774
No 332
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=2.4e+02 Score=28.86 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=31.4
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~ 383 (403)
..-+-|+.|...|..|++..+. +.+...|-+|+|..|+..++-
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ 420 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDA 420 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccH
Confidence 3445667777777777776443 566788999999999997763
No 333
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.77 E-value=2.6e+02 Score=21.97 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
+.+.+.+.-.+|=-.+-+|||+.|.+.-.++-+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4566677777888889999999999999988775
No 334
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.72 E-value=1.6e+02 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659 369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAARG 402 (403)
Q Consensus 369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~ 402 (403)
+.-=..++.+|.|+|++|..-..+... ||++.+
T Consensus 113 ik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 113 IKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 334456788999999999999999888 887653
No 335
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.69 E-value=4.7e+02 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 350 (403)
+..+.+....-+.++..|+|..|+.....+.+.+..
T Consensus 124 i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~ 159 (291)
T PF10475_consen 124 IKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEE 159 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 445556667788899999999999999988888755
No 336
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=23.46 E-value=2.4e+02 Score=30.15 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (403)
Q Consensus 315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ 385 (403)
.+....++......+..++|..|+.....-...++. +.-+--++...++..+..++.++..+..+..++..
T Consensus 616 ~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~~~ 688 (691)
T COG0751 616 FEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVADFSL 688 (691)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 355666777777888888888888777554333322 22222244556788999999999999999887764
No 337
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=23.33 E-value=99 Score=31.87 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=32.8
Q ss_pred HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR 401 (403)
Q Consensus 363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~ 401 (403)
++...+.+.-||-|+..++++.+|+.+...+-...|.++
T Consensus 441 n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 566778999999999999999999988877777777543
No 338
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=1.4e+02 Score=28.30 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=69.6
Q ss_pred CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccc---cCchHHHH-----
Q 015659 245 QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWE---MNNQGKIE----- 316 (403)
Q Consensus 245 ~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~---m~~~e~~~----- 316 (403)
++.|-|++.... -.|.....++.++..-+-.+.-. ...|| .++-|..+...-. +.+++.+.
T Consensus 60 qL~p~Lekla~~-~~G~f~LakvN~D~~p~vAaqfg-iqsIP---------tV~af~dGqpVdgF~G~qPesqlr~~ld~ 128 (304)
T COG3118 60 QLTPTLEKLAAE-YKGKFKLAKVNCDAEPMVAAQFG-VQSIP---------TVYAFKDGQPVDGFQGAQPESQLRQFLDK 128 (304)
T ss_pred HHHHHHHHHHHH-hCCceEEEEecCCcchhHHHHhC-cCcCC---------eEEEeeCCcCccccCCCCcHHHHHHHHHH
Confidence 555666655543 45677777777664222111100 24455 2223333333322 23444332
Q ss_pred ----HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659 317 ----AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (403)
Q Consensus 317 ----~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~ 388 (403)
..+..-..+.++...+++..|...+..++...... ..+.+-+|-||+..|+...|-.
T Consensus 129 ~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~~~~la~~~l~~g~~e~A~~ 189 (304)
T COG3118 129 VLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEAKLLLAECLLAAGDVEAAQA 189 (304)
T ss_pred hcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chHHHHHHHHHHHcCChHHHHH
Confidence 12224566889999999999999999999984332 3366678999999999866643
No 339
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.20 E-value=98 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADC 347 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~ 347 (403)
-.+.+..+++|||+.|.+.-++|..+
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHH
Confidence 34678899999999999888888876
No 340
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.16 E-value=1.1e+02 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=42.3
Q ss_pred hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
-..+++++|.+.|++||.. +--.+++.+-.|-|-||.+.-+.|..-.++|+.+=|
T Consensus 84 esq~e~~RARSv~ERALdv---------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDV---------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HhHHHHHHHHHHHHHHHhc---------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 3567888999999999885 223466888888888998888888887777776655
No 341
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=22.87 E-value=4.1e+02 Score=25.92 Aligned_cols=65 Identities=8% Similarity=0.071 Sum_probs=42.9
Q ss_pred hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHH-----HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV-----KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~-----~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+-..++...|+.|.+.+.....+. .+|... .-....+++..|......++|.++|.+++.|+.
T Consensus 196 iAKLa~qv~~~Y~~a~~~l~~~~~i~-~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 196 IAKLAAQVSDYYQEALKYANKSDLIR-SDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445567788999999987443333 444332 223444566677777777789999988888876
No 342
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.62 E-value=3.4e+02 Score=30.98 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=18.2
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..|+.|..+|.+.+++++|+...++..+
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566666677777777777776666543
No 343
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.38 E-value=1.9e+02 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.060 Sum_probs=18.1
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..+.++|.-+=+.|++.+|+.++.++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456666667777777777666666544
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=1.3e+02 Score=28.52 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH---HHHHHHHH
Q 015659 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG---AIELCSKV 393 (403)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~---ai~~~~~a 393 (403)
-+.+|.+.++.++++|+..|.+.+.- +.+.++.. ....-...+|+...|...|+|.. -|.+.+++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k-----g~s~dek~--~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~ 74 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK-----GVSKDEKT--LNEQEATVLELFKLYVSKGDYCSLGDTITSSREA 74 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC-----CCChhhhh--hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH
Confidence 45788999999999999999988774 23322221 22234567888888998887654 34444444
No 345
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=21.35 E-value=2e+02 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=24.8
Q ss_pred HHhhHhhhcCcHHHHHHHHHHHHHHhccCC
Q 015659 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDG 352 (403)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 352 (403)
-.|.-+|+.++|.+|++.|.+|-+.+...+
T Consensus 323 y~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 323 YLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 458889999999999999999999885533
No 346
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.88 E-value=1.5e+02 Score=28.30 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=21.0
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVERE 398 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp 398 (403)
..++-++.||....+|..|-.++++.-.+.|
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHP 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 3445577777777777777777776666555
No 347
>PLN03218 maturation of RBCL 1; Provisional
Probab=20.79 E-value=2.6e+02 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=17.1
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
..|+.+..+|.|.+++++|+...++..+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3555566666666666666666665544
No 348
>PHA02122 hypothetical protein
Probab=20.76 E-value=1.6e+02 Score=20.22 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCCCEEEEEEEEEEcCCcEE
Q 015659 63 EFGDEVTIHYVGTLLDGTKF 82 (403)
Q Consensus 63 ~~gd~V~v~y~~~~~~g~~~ 82 (403)
..||.|.++|.+.. +|+.|
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~ 57 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLI 57 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEE
Confidence 46899999999887 77665
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.71 E-value=2e+02 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=14.7
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 371 LNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 371 ~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
.+.|.-.=+.|+|.+|+..+.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555556666666666666554
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.54 E-value=1.1e+02 Score=17.19 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHHHhc
Q 015659 332 GKYERAGKKYNKAADCVS 349 (403)
Q Consensus 332 ~~~~~A~~~Y~~al~~l~ 349 (403)
|+++.|...|++++..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 467889999999998743
No 351
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=6e+02 Score=26.20 Aligned_cols=83 Identities=20% Similarity=0.078 Sum_probs=57.6
Q ss_pred ccCchHHHHHHHHHHHHhhHh-hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHH
Q 015659 308 EMNNQGKIEAAGRKKEEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQG 385 (403)
Q Consensus 308 ~m~~~e~~~~~~~~k~~Gn~~-fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ 385 (403)
.+.+..+++.-..+ +.|.-+ |-..|++.|...-++|..+....+.+- ..+-..++=+|.||+... .+..
T Consensus 37 ~~~is~~veart~L-qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~ 107 (629)
T KOG2300|consen 37 QFQISFLVEARTHL-QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPP 107 (629)
T ss_pred ccCChHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCch
Confidence 34444444444444 445555 578899999999999999987766543 122335566788888888 7888
Q ss_pred HHHHHHHHHhcccc
Q 015659 386 AIELCSKVIVEREA 399 (403)
Q Consensus 386 ai~~~~~aL~~dp~ 399 (403)
+....++|+++.-+
T Consensus 108 ~KalLrkaielsq~ 121 (629)
T KOG2300|consen 108 AKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888887544
No 352
>PF13041 PPR_2: PPR repeat family
Probab=20.16 E-value=2.1e+02 Score=18.47 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=24.3
Q ss_pred HhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659 368 SCWLNSAACCLKLKDYQGAIELCSKVIVE 396 (403)
Q Consensus 368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~ 396 (403)
..|+-+-.++.+.+++++|++..++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677778999999999999999888654
No 353
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=20.13 E-value=4.4e+02 Score=25.64 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHHhccCCCC----ChHHHHHH-----HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659 333 KYERAGKKYNKAADCVSEDGSF----VDDEQKLV-----KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV 395 (403)
Q Consensus 333 ~~~~A~~~Y~~al~~l~~~~~~----~~~~~~~~-----~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~ 395 (403)
-..++...|+.|...+...... -+.+|... .-.....++..|..+...++|.++|.+++.|+.
T Consensus 201 La~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~ 272 (348)
T cd09242 201 LASATANLYESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAES 272 (348)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHH
Confidence 4456778899999988652222 24555443 233345566677777777889999998888865
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.06 E-value=4.6e+02 Score=23.56 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=42.2
Q ss_pred HhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCH-------HHHHHHHHHHHhcc
Q 015659 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY-------QGAIELCSKVIVER 397 (403)
Q Consensus 327 ~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~-------~~ai~~~~~aL~~d 397 (403)
.+=....+..|+..|.-|+...+..... ......+++.+|=+|=-+++. ..|+..+.+|++.+
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556789999999999999986542211 224456778888887777774 44555555555443
Done!