BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015660
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53564|CUX1_MOUSE Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3
Length = 1515
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 279 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV 331
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q KA V
Sbjct: 222 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQ-----KAPDV 276
Query: 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQATQ 387
+ T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 277 AIEVLTRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKN 333
Query: 388 SKVTKFSQK 396
S + + +K
Sbjct: 334 STLKQLEEK 342
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 279 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV 331
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q + +
Sbjct: 222 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE-QAI 280
Query: 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQATQ 387
+L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 281 EVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKN 335
Query: 388 SKVTKFSQK 396
S + + +K
Sbjct: 336 STLKQLEEK 344
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 280 KAKVKEMMAVLKDVESAQID-VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL---LE 335
K+KV +M L++ ES+ D V+ + + E+ + E S ++TI K L LE
Sbjct: 32 KSKVADMQDALRETESSLQDFVESSKELEQEMEK--ELSASNKTISDLKRRNEQLSGDLE 89
Query: 336 STKKELESQMNE----LALKEKEVAGLKESVAKTKARLSDLELESNRLE 380
K + ++E L +KE+ L+ESV KA+L D EL ++ LE
Sbjct: 90 DWKSKYSRALSEHNATLTTLQKELGQLRESVDIYKAKLRDTELTNDELE 138
>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
Length = 979
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 19/104 (18%)
Query: 306 ILNEISEAIEFSTQHQTIDAAKANCVNL---------LESTKKELESQMN----ELALKE 352
+LNE+++ Q +DA K N V++ L +T KE+E +++ LA KE
Sbjct: 708 VLNELTQL------KQLVDAHKENSVSITEHLQVITTLRTTAKEMEEKISALTGHLANKE 761
Query: 353 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396
EVA L++ +A+ KA +SD + + E++ + +S+V + K
Sbjct: 762 AEVAKLEKQLAEEKAAVSDAMVPKSSYEKLQASLESEVNALATK 805
>sp|Q8NUV0|PLS_STAAW Putative surface protein MW2416 OS=Staphylococcus aureus (strain MW2)
GN=MW2416 PE=4 SV=1
Length = 1371
Score = 33.1 bits (74), Expect = 3.8, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 54 KASDSQPGTPLTPRAVDK-VAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREI 112
K + QP +T + VDK V GG+K PK EN + SRP H S +
Sbjct: 1244 KVGEGQPTEEITKQPVDKIVEFGGEK-----------PKDPKGPENPEKPSRPTHPSGPV 1292
Query: 113 HPEDHSLNKEKVRSTQSV 130
+P++ L+K++ + + V
Sbjct: 1293 NPDNPGLSKDRAKPNEPV 1310
>sp|B8ITX3|MCH_METNO Methenyltetrahydromethanopterin cyclohydrolase OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=mch PE=3 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 96 SENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPG 155
S G++ + EH E+H +D+++ V + S PP+ + + P E+VT +
Sbjct: 119 SGPGRAAAAVEHLFEELHYKDNAVQIALVLESASAPPASVVAKVAEAAGVPLEAVTFIYA 178
Query: 156 ASPSKNGKDNKVQAPIEIH-HSTEDGGEDIPSPADG 190
+ S G V +E+ H G D+ DG
Sbjct: 179 PTQSLAGSTQVVARVLEVALHKAHSVGFDLAKIVDG 214
>sp|P08226|APOE_MOUSE Apolipoprotein E OS=Mus musculus GN=Apoe PE=1 SV=2
Length = 311
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 300 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 359
+ W++ + +++ E ++ S Q + A + + +++ KKELE Q+ +A E+ A L
Sbjct: 47 LRWVQTLSDQVQEELQSSQVTQELTALMEDTMTEVKAYKKELEEQLGPVA--EETRARLG 104
Query: 360 ESVAKTKARL-SDLELESNRLEQ 381
+ V +ARL +D+E NRL Q
Sbjct: 105 KEVQAAQARLGADMEDLRNRLGQ 127
>sp|Q5R8V1|CASP_PONAB Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1
Length = 678
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 279 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 330
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 386
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAK 345
Query: 387 QSKVTKFSQK 396
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|P70403|CASP_MOUSE Protein CASP OS=Mus musculus GN=Cux1 PE=2 SV=2
Length = 678
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 279 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 330
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 386
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAK 345
Query: 387 QSKVTKFSQK 396
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|Q13948|CASP_HUMAN Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2
Length = 678
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 279 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 330
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 386
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAK 345
Query: 387 QSKVTKFSQK 396
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|Q9UBC2|EP15R_HUMAN Epidermal growth factor receptor substrate 15-like 1 OS=Homo
sapiens GN=EPS15L1 PE=1 SV=1
Length = 864
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 30/146 (20%)
Query: 264 CSVVQELQS-----TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 318
S VQELQ+ TS +Q +A+ ++ L +++ + LR++L+++ + + T
Sbjct: 418 TSEVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAK---LRDMLSDVRQKCQDET 474
Query: 319 QHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 378
Q ++ S K +++SQ ++L +E + + + K+ L+ L+ E +
Sbjct: 475 Q-------------MISSLKTQIQSQESDLKSQE-------DDLNRAKSELNRLQQEETQ 514
Query: 379 LEQIIQATQSKVTKF--SQKSLADEI 402
LEQ IQA + ++ S KS DEI
Sbjct: 515 LEQSIQAGRVQLETIIKSLKSTQDEI 540
>sp|Q6CWM4|BRE1_KLULA E3 ubiquitin-protein ligase BRE1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=BRE1 PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 22/92 (23%)
Query: 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN------------- 377
+++LE+T KEL N+ E+E++ L+++VA K+ LS+ +L+SN
Sbjct: 238 ISVLEATVKELTEWKNQ---NERELSELRQTVASNKSALSNNQLQSNSQHQPDASVTNEK 294
Query: 378 ------RLEQIIQATQSKVTKFSQKSLADEIL 403
+ EQ+ Q + +TKF Q S EI
Sbjct: 295 ISSLTKQNEQLQQINEGYLTKFQQLSADREIF 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.123 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,188,308
Number of Sequences: 539616
Number of extensions: 5981072
Number of successful extensions: 22950
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 537
Number of HSP's that attempted gapping in prelim test: 21733
Number of HSP's gapped (non-prelim): 1800
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)