Query 015660
Match_columns 403
No_of_seqs 119 out of 129
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05278 PEARLI-4: Arabidopsis 100.0 1.2E-62 2.6E-67 473.0 23.2 216 186-401 50-269 (269)
2 KOG1987 Speckle-type POZ prote 99.7 4E-17 8.7E-22 154.8 13.5 175 166-357 94-278 (297)
3 PF05266 DUF724: Protein of un 98.0 0.0003 6.6E-09 66.0 16.7 128 258-389 47-181 (190)
4 PRK11637 AmiB activator; Provi 91.2 11 0.00023 39.1 16.1 55 336-390 198-256 (428)
5 COG4026 Uncharacterized protei 90.5 2.1 4.6E-05 42.4 9.7 58 337-394 147-204 (290)
6 smart00787 Spc7 Spc7 kinetocho 90.3 15 0.00032 37.4 15.9 66 333-398 205-270 (312)
7 PF08317 Spc7: Spc7 kinetochor 90.3 14 0.0003 37.2 15.6 51 333-383 210-260 (325)
8 PF07889 DUF1664: Protein of u 88.4 6.2 0.00014 35.5 10.4 37 359-395 88-124 (126)
9 PRK11637 AmiB activator; Provi 87.9 7.5 0.00016 40.1 12.1 15 254-268 19-33 (428)
10 TIGR02680 conserved hypothetic 87.7 11 0.00023 45.1 14.6 51 276-326 215-265 (1353)
11 PF10168 Nup88: Nuclear pore c 87.5 11 0.00023 42.4 13.8 126 226-355 501-637 (717)
12 PF10186 Atg14: UV radiation r 87.1 13 0.00029 35.2 12.5 12 301-312 37-48 (302)
13 PRK13182 racA polar chromosome 86.5 6.7 0.00015 36.8 9.9 61 242-305 4-64 (175)
14 PHA02562 46 endonuclease subun 86.3 19 0.00041 37.7 14.1 45 335-379 347-391 (562)
15 PHA02562 46 endonuclease subun 85.6 13 0.00029 38.8 12.7 93 295-389 178-277 (562)
16 PF10168 Nup88: Nuclear pore c 85.3 9.3 0.0002 42.9 11.9 61 326-386 559-619 (717)
17 KOG2391 Vacuolar sorting prote 84.9 6.4 0.00014 40.9 9.6 60 330-392 219-278 (365)
18 COG3937 Uncharacterized conser 84.0 7.9 0.00017 34.2 8.5 37 340-376 69-106 (108)
19 PF09738 DUF2051: Double stran 83.9 17 0.00036 37.0 12.0 54 304-357 83-137 (302)
20 PRK04863 mukB cell division pr 83.9 42 0.00091 40.9 17.0 157 224-390 249-413 (1486)
21 TIGR02168 SMC_prok_B chromosom 83.5 61 0.0013 36.4 17.2 21 219-242 112-132 (1179)
22 TIGR02169 SMC_prok_A chromosom 83.2 52 0.0011 37.2 16.6 48 219-269 110-168 (1164)
23 PRK02224 chromosome segregatio 83.0 32 0.00069 38.4 14.8 11 303-313 494-504 (880)
24 PRK01156 chromosome segregatio 82.2 27 0.00059 39.2 14.0 22 290-311 321-342 (895)
25 PF09728 Taxilin: Myosin-like 81.8 17 0.00036 36.8 11.1 64 332-395 237-300 (309)
26 PF05600 DUF773: Protein of un 81.4 24 0.00053 38.1 12.7 31 248-279 345-375 (507)
27 PF02403 Seryl_tRNA_N: Seryl-t 81.1 30 0.00066 28.9 10.8 26 358-383 72-97 (108)
28 PF08317 Spc7: Spc7 kinetochor 81.0 65 0.0014 32.4 15.3 43 337-379 221-263 (325)
29 cd04776 HTH_GnyR Helix-Turn-He 80.7 27 0.00058 30.2 10.6 32 276-308 35-66 (118)
30 PRK02224 chromosome segregatio 80.4 29 0.00063 38.7 13.4 33 233-266 129-161 (880)
31 COG4026 Uncharacterized protei 80.0 10 0.00022 37.8 8.5 9 304-312 134-142 (290)
32 PF07888 CALCOCO1: Calcium bin 79.9 23 0.0005 38.9 12.0 22 360-381 213-234 (546)
33 PF15112 DUF4559: Domain of un 79.9 75 0.0016 32.8 14.8 61 230-298 138-200 (307)
34 PF04740 LXG: LXG domain of WX 79.7 50 0.0011 30.3 13.5 54 252-307 48-104 (204)
35 PRK14148 heat shock protein Gr 79.3 3.8 8.1E-05 39.2 5.3 56 348-403 42-97 (195)
36 PRK09343 prefoldin subunit bet 79.2 34 0.00073 30.0 10.8 43 352-394 70-112 (121)
37 COG1196 Smc Chromosome segrega 78.8 54 0.0012 38.5 15.4 101 219-329 112-224 (1163)
38 KOG0995 Centromere-associated 78.8 90 0.0019 34.7 15.9 71 322-392 284-357 (581)
39 PF10186 Atg14: UV radiation r 78.1 64 0.0014 30.6 14.4 19 293-311 65-83 (302)
40 PF04156 IncA: IncA protein; 77.8 55 0.0012 29.8 16.0 56 333-388 131-186 (191)
41 smart00787 Spc7 Spc7 kinetocho 77.7 84 0.0018 32.0 14.5 49 333-381 212-260 (312)
42 KOG1962 B-cell receptor-associ 76.4 44 0.00095 32.8 11.6 76 305-380 131-206 (216)
43 KOG4657 Uncharacterized conser 75.9 45 0.00097 33.2 11.6 37 347-383 87-123 (246)
44 KOG0250 DNA repair protein RAD 75.6 34 0.00073 40.3 12.3 37 351-387 420-456 (1074)
45 COG1196 Smc Chromosome segrega 75.3 1.3E+02 0.0028 35.5 17.1 8 303-310 791-798 (1163)
46 PRK05431 seryl-tRNA synthetase 74.8 26 0.00057 36.7 10.5 42 355-396 68-109 (425)
47 TIGR03185 DNA_S_dndD DNA sulfu 74.6 72 0.0016 35.0 14.1 24 283-310 171-194 (650)
48 PF10473 CENP-F_leu_zip: Leuci 74.2 71 0.0015 29.3 14.0 55 300-360 26-80 (140)
49 TIGR02168 SMC_prok_B chromosom 73.6 98 0.0021 34.8 15.0 9 300-308 826-834 (1179)
50 KOG0963 Transcription factor/C 73.6 61 0.0013 36.3 13.0 105 285-393 236-343 (629)
51 TIGR01843 type_I_hlyD type I s 73.5 80 0.0017 31.4 13.1 40 363-402 242-281 (423)
52 PF05278 PEARLI-4: Arabidopsis 72.8 52 0.0011 33.3 11.4 52 336-387 211-262 (269)
53 PRK04778 septation ring format 72.4 1.5E+02 0.0033 32.2 16.6 51 258-314 212-265 (569)
54 COG4942 Membrane-bound metallo 72.4 27 0.00058 37.3 9.8 54 334-387 47-100 (420)
55 TIGR00634 recN DNA repair prot 72.3 33 0.00072 36.9 10.7 92 219-314 109-205 (563)
56 PF00038 Filament: Intermediat 71.8 73 0.0016 31.1 12.2 54 322-375 72-125 (312)
57 PRK14160 heat shock protein Gr 71.7 18 0.00039 35.1 7.8 56 348-403 63-118 (211)
58 PRK14161 heat shock protein Gr 71.7 7.7 0.00017 36.5 5.2 54 350-403 23-76 (178)
59 KOG0964 Structural maintenance 71.6 27 0.00059 41.0 10.2 31 300-330 193-223 (1200)
60 PF07889 DUF1664: Protein of u 71.6 53 0.0011 29.6 10.2 77 304-389 49-125 (126)
61 smart00502 BBC B-Box C-termina 71.4 55 0.0012 26.7 12.4 33 360-392 72-104 (127)
62 TIGR00606 rad50 rad50. This fa 71.3 1.5E+02 0.0032 35.5 16.5 138 235-388 152-290 (1311)
63 KOG0979 Structural maintenance 71.1 1.1E+02 0.0023 36.3 14.6 58 254-317 198-260 (1072)
64 TIGR02977 phageshock_pspA phag 71.0 98 0.0021 29.4 13.8 42 282-326 39-80 (219)
65 PRK10869 recombination and rep 70.7 94 0.002 33.8 13.7 19 300-318 298-316 (553)
66 PF13851 GAS: Growth-arrest sp 70.5 1E+02 0.0022 29.4 14.6 13 253-265 12-24 (201)
67 PRK03598 putative efflux pump 70.4 21 0.00045 35.2 8.1 39 225-263 45-87 (331)
68 PF10267 Tmemb_cc2: Predicted 69.9 81 0.0017 33.4 12.6 18 205-222 174-191 (395)
69 KOG0994 Extracellular matrix g 69.8 1.2E+02 0.0026 36.8 14.7 98 277-376 1535-1635(1758)
70 KOG0962 DNA repair protein RAD 69.8 55 0.0012 39.4 12.4 22 303-324 170-191 (1294)
71 PRK14140 heat shock protein Gr 69.2 9.4 0.0002 36.4 5.2 58 346-403 37-94 (191)
72 COG2178 Predicted RNA-binding 69.1 33 0.00071 33.4 8.8 67 229-295 57-149 (204)
73 KOG1029 Endocytic adaptor prot 69.1 44 0.00096 38.6 10.9 12 333-344 397-408 (1118)
74 KOG0250 DNA repair protein RAD 68.9 1.8E+02 0.0038 34.8 15.9 26 300-325 237-262 (1074)
75 PF02994 Transposase_22: L1 tr 68.7 7.6 0.00016 40.0 4.8 43 354-396 145-187 (370)
76 PF04111 APG6: Autophagy prote 68.7 28 0.00062 35.2 8.8 34 365-398 104-137 (314)
77 PHA03158 hypothetical protein; 68.1 49 0.0011 32.6 9.8 52 219-274 202-253 (273)
78 PF09726 Macoilin: Transmembra 68.1 1E+02 0.0022 34.9 13.6 23 293-315 462-484 (697)
79 KOG0996 Structural maintenance 67.8 60 0.0013 38.9 12.0 53 337-389 526-578 (1293)
80 PRK14143 heat shock protein Gr 67.4 11 0.00024 37.0 5.5 47 357-403 78-124 (238)
81 TIGR03185 DNA_S_dndD DNA sulfu 67.4 66 0.0014 35.3 11.9 32 348-379 430-461 (650)
82 COG1579 Zn-ribbon protein, pos 67.4 56 0.0012 32.4 10.3 68 299-372 18-85 (239)
83 TIGR02449 conserved hypothetic 66.7 59 0.0013 26.4 8.5 38 337-374 26-63 (65)
84 KOG0804 Cytoplasmic Zn-finger 66.5 1.6E+02 0.0036 32.0 14.0 14 226-239 325-338 (493)
85 PF10046 BLOC1_2: Biogenesis o 65.6 83 0.0018 26.6 12.2 59 334-392 40-98 (99)
86 COG0419 SbcC ATPase involved i 65.6 1.2E+02 0.0026 34.6 13.8 91 295-386 523-619 (908)
87 PRK10884 SH3 domain-containing 64.6 66 0.0014 31.0 9.9 8 300-307 77-84 (206)
88 TIGR00414 serS seryl-tRNA synt 64.5 72 0.0016 33.5 11.0 43 355-397 71-113 (418)
89 PRK09039 hypothetical protein; 64.3 89 0.0019 32.0 11.4 42 333-374 138-179 (343)
90 PF10146 zf-C4H2: Zinc finger- 63.9 1.3E+02 0.0028 29.5 12.0 18 299-316 9-26 (230)
91 PF10267 Tmemb_cc2: Predicted 63.8 86 0.0019 33.2 11.4 108 276-394 207-318 (395)
92 PF14257 DUF4349: Domain of un 63.6 37 0.0008 32.7 8.2 32 344-375 160-191 (262)
93 PRK00286 xseA exodeoxyribonucl 63.6 1E+02 0.0022 32.0 11.9 13 243-255 241-253 (438)
94 TIGR00606 rad50 rad50. This fa 63.5 2.6E+02 0.0056 33.5 16.4 22 287-308 795-816 (1311)
95 PF05266 DUF724: Protein of un 62.9 1.4E+02 0.0031 28.4 14.8 18 333-350 128-145 (190)
96 KOG0964 Structural maintenance 62.7 49 0.0011 39.0 10.0 38 346-383 425-462 (1200)
97 PF00038 Filament: Intermediat 62.4 1.5E+02 0.0032 29.0 12.1 17 281-297 11-27 (312)
98 PRK14139 heat shock protein Gr 62.2 17 0.00037 34.6 5.5 44 360-403 46-89 (185)
99 PLN02320 seryl-tRNA synthetase 61.9 93 0.002 34.0 11.5 41 357-397 134-174 (502)
100 KOG0971 Microtubule-associated 61.9 43 0.00092 39.3 9.2 50 333-385 1002-1051(1243)
101 PRK14158 heat shock protein Gr 61.4 18 0.0004 34.6 5.6 50 354-403 48-97 (194)
102 PF14193 DUF4315: Domain of un 61.3 28 0.0006 29.3 6.0 27 350-376 5-31 (83)
103 PF06008 Laminin_I: Laminin Do 61.2 1.6E+02 0.0035 28.5 14.9 13 276-288 118-130 (264)
104 PF03148 Tektin: Tektin family 61.1 2.1E+02 0.0045 29.7 14.3 93 233-330 201-294 (384)
105 PF10212 TTKRSYEDQ: Predicted 61.0 2.3E+02 0.005 31.3 14.2 103 253-387 412-514 (518)
106 COG3883 Uncharacterized protei 61.0 1.7E+02 0.0037 29.6 12.4 25 340-364 74-98 (265)
107 KOG0995 Centromere-associated 60.8 1.8E+02 0.0038 32.5 13.3 51 340-393 333-383 (581)
108 KOG0977 Nuclear envelope prote 60.4 63 0.0014 35.7 10.0 105 275-392 86-194 (546)
109 PRK14155 heat shock protein Gr 60.4 13 0.00028 36.0 4.4 45 359-403 26-70 (208)
110 PF11932 DUF3450: Protein of u 60.2 1.7E+02 0.0036 28.3 12.8 62 332-393 56-117 (251)
111 PF09726 Macoilin: Transmembra 60.1 1.1E+02 0.0023 34.7 11.9 20 300-319 490-509 (697)
112 PRK11519 tyrosine kinase; Prov 59.7 90 0.002 34.8 11.3 54 244-314 230-283 (719)
113 TIGR00237 xseA exodeoxyribonuc 59.5 1.5E+02 0.0033 31.2 12.4 43 293-335 279-321 (432)
114 PRK14127 cell division protein 59.1 82 0.0018 27.8 8.7 39 334-372 32-70 (109)
115 PF12718 Tropomyosin_1: Tropom 58.9 1.4E+02 0.0031 27.0 11.7 30 361-390 109-138 (143)
116 KOG4466 Component of histone d 58.7 87 0.0019 32.0 9.9 98 283-380 25-136 (291)
117 KOG0976 Rho/Rac1-interacting s 58.4 2.9E+02 0.0062 32.6 14.7 24 352-375 385-408 (1265)
118 PRK14151 heat shock protein Gr 58.1 18 0.0004 33.9 4.9 41 362-402 36-76 (176)
119 KOG4674 Uncharacterized conser 58.1 1.9E+02 0.0042 36.3 14.2 115 250-368 1174-1300(1822)
120 PRK14162 heat shock protein Gr 58.0 23 0.00049 33.9 5.6 50 354-403 47-96 (194)
121 COG1382 GimC Prefoldin, chaper 57.9 1.3E+02 0.0028 27.1 9.8 43 352-394 69-111 (119)
122 TIGR02449 conserved hypothetic 57.6 67 0.0014 26.1 7.3 51 340-393 4-54 (65)
123 PRK14153 heat shock protein Gr 57.5 19 0.0004 34.6 4.9 52 352-403 39-90 (194)
124 KOG0977 Nuclear envelope prote 56.6 1.2E+02 0.0025 33.7 11.2 28 230-257 71-99 (546)
125 KOG3564 GTPase-activating prot 56.4 78 0.0017 34.9 9.7 76 315-390 32-107 (604)
126 PRK14163 heat shock protein Gr 56.1 23 0.0005 34.5 5.3 46 358-403 52-97 (214)
127 PRK09039 hypothetical protein; 56.0 2.5E+02 0.0053 28.9 16.4 50 340-389 124-173 (343)
128 KOG0996 Structural maintenance 55.7 3.9E+02 0.0084 32.6 15.6 28 221-248 791-818 (1293)
129 PF10037 MRP-S27: Mitochondria 55.5 2.9E+02 0.0063 29.6 14.0 122 255-379 257-391 (429)
130 PLN02678 seryl-tRNA synthetase 55.3 1.4E+02 0.003 32.0 11.4 39 355-393 73-111 (448)
131 KOG2398 Predicted proline-seri 55.2 1.8E+02 0.004 32.5 12.6 48 340-393 150-198 (611)
132 PF10473 CENP-F_leu_zip: Leuci 55.1 1.7E+02 0.0037 26.8 11.2 69 325-393 17-99 (140)
133 COG1842 PspA Phage shock prote 55.0 2.1E+02 0.0046 27.9 13.4 122 255-379 7-132 (225)
134 PF03310 Cauli_DNA-bind: Cauli 55.0 43 0.00094 30.2 6.4 8 307-314 5-12 (121)
135 PF10234 Cluap1: Clusterin-ass 54.8 1.8E+02 0.004 29.3 11.5 34 281-314 117-150 (267)
136 PRK12704 phosphodiesterase; Pr 54.6 2.1E+02 0.0044 31.2 12.6 16 378-393 132-147 (520)
137 PF08614 ATG16: Autophagy prot 54.5 1.8E+02 0.004 27.0 11.4 54 333-386 131-184 (194)
138 PF04012 PspA_IM30: PspA/IM30 54.5 1.9E+02 0.0041 27.1 13.7 23 355-377 114-136 (221)
139 PF07544 Med9: RNA polymerase 54.2 54 0.0012 27.0 6.5 28 362-389 54-81 (83)
140 PF15290 Syntaphilin: Golgi-lo 54.1 98 0.0021 31.8 9.4 27 347-373 118-144 (305)
141 PF15290 Syntaphilin: Golgi-lo 54.0 79 0.0017 32.5 8.8 20 369-388 119-138 (305)
142 PRK14144 heat shock protein Gr 54.0 16 0.00035 35.2 3.9 53 351-403 50-102 (199)
143 PF13851 GAS: Growth-arrest sp 54.0 2E+02 0.0044 27.3 12.1 23 359-381 92-114 (201)
144 PF12240 Angiomotin_C: Angiomo 53.0 1.5E+02 0.0032 29.1 10.1 57 337-394 29-97 (205)
145 COG1775 HgdB Benzoyl-CoA reduc 52.9 76 0.0016 33.6 8.7 55 251-305 133-187 (379)
146 PF12718 Tropomyosin_1: Tropom 52.6 1.8E+02 0.0039 26.3 12.5 45 347-391 88-132 (143)
147 cd01109 HTH_YyaN Helix-Turn-He 52.5 99 0.0021 26.1 8.1 56 242-301 4-61 (113)
148 COG2433 Uncharacterized conser 52.5 1.7E+02 0.0038 32.9 11.7 12 246-257 334-345 (652)
149 PF05384 DegS: Sensor protein 52.1 2E+02 0.0044 26.8 11.9 49 333-381 78-126 (159)
150 KOG3433 Protein involved in me 51.9 83 0.0018 30.6 8.1 64 333-396 78-145 (203)
151 PF07106 TBPIP: Tat binding pr 51.9 73 0.0016 28.8 7.6 23 364-386 113-135 (169)
152 PRK14157 heat shock protein Gr 51.8 25 0.00053 34.7 4.8 42 361-402 92-133 (227)
153 PF07106 TBPIP: Tat binding pr 51.4 65 0.0014 29.2 7.2 22 353-374 116-137 (169)
154 KOG3850 Predicted membrane pro 51.4 2.3E+02 0.005 30.5 11.9 19 357-375 350-368 (455)
155 KOG0982 Centrosomal protein Nu 51.1 1.7E+02 0.0037 31.8 11.0 34 362-395 299-332 (502)
156 cd07619 BAR_Rich2 The Bin/Amph 51.0 2.7E+02 0.0058 27.9 12.6 35 274-308 111-145 (248)
157 PRK00106 hypothetical protein; 51.0 2.1E+02 0.0045 31.5 12.0 52 341-395 113-164 (535)
158 PF10458 Val_tRNA-synt_C: Valy 50.9 64 0.0014 25.3 6.2 28 360-387 39-66 (66)
159 PF15233 SYCE1: Synaptonemal c 50.9 2E+02 0.0044 26.5 12.4 93 260-357 8-110 (134)
160 PRK10361 DNA recombination pro 50.8 2.1E+02 0.0046 31.2 11.9 12 382-393 141-152 (475)
161 PF11559 ADIP: Afadin- and alp 50.0 1.8E+02 0.004 25.7 14.2 16 255-270 32-47 (151)
162 PF10805 DUF2730: Protein of u 49.8 1.3E+02 0.0028 25.9 8.4 44 330-373 47-92 (106)
163 PF03915 AIP3: Actin interacti 49.7 2.9E+02 0.0063 29.6 12.6 36 327-362 234-269 (424)
164 PRK14154 heat shock protein Gr 49.5 31 0.00068 33.5 5.1 50 354-403 60-109 (208)
165 TIGR00414 serS seryl-tRNA synt 49.5 1.8E+02 0.004 30.5 11.1 15 361-375 84-98 (418)
166 KOG2077 JNK/SAPK-associated pr 49.3 1.5E+02 0.0031 33.6 10.4 49 260-314 304-352 (832)
167 PRK14141 heat shock protein Gr 49.2 29 0.00063 33.6 4.8 39 364-402 49-87 (209)
168 PRK05771 V-type ATP synthase s 49.0 93 0.002 34.1 9.2 21 300-320 45-65 (646)
169 PF14772 NYD-SP28: Sperm tail 48.8 1.2E+02 0.0025 25.6 7.8 35 320-354 57-91 (104)
170 PF08614 ATG16: Autophagy prot 48.7 63 0.0014 30.1 6.8 15 300-314 90-104 (194)
171 PRK10884 SH3 domain-containing 48.5 2E+02 0.0043 27.7 10.3 16 242-257 78-93 (206)
172 PRK03947 prefoldin subunit alp 48.5 1.7E+02 0.0037 25.6 9.1 15 281-295 37-51 (140)
173 PRK00409 recombination and DNA 48.3 2.7E+02 0.0059 31.8 12.8 22 222-243 440-461 (782)
174 PF12329 TMF_DNA_bd: TATA elem 48.2 1.5E+02 0.0032 24.1 8.7 21 361-381 48-68 (74)
175 PRK14145 heat shock protein Gr 48.2 40 0.00086 32.4 5.5 50 354-403 53-102 (196)
176 PF10243 MIP-T3: Microtubule-b 48.1 6 0.00013 42.4 0.0 124 227-376 390-532 (539)
177 PRK09841 cryptic autophosphory 48.0 92 0.002 34.7 9.1 15 300-314 269-283 (726)
178 PF05781 MRVI1: MRVI1 protein; 47.8 1.7E+02 0.0037 32.4 10.7 28 277-308 187-216 (538)
179 PF10046 BLOC1_2: Biogenesis o 47.7 1E+02 0.0022 26.1 7.4 49 337-385 50-98 (99)
180 KOG3876 Arfaptin and related p 47.6 1.8E+02 0.004 29.9 10.2 104 258-375 202-305 (341)
181 PF04799 Fzo_mitofusin: fzo-li 47.5 1.5E+02 0.0033 28.2 9.1 51 331-381 115-165 (171)
182 KOG0243 Kinesin-like protein [ 47.3 3.5E+02 0.0076 32.4 13.6 100 255-354 401-512 (1041)
183 PRK12705 hypothetical protein; 47.1 4.2E+02 0.0092 29.1 15.0 7 301-307 23-29 (508)
184 PRK10361 DNA recombination pro 47.1 4.1E+02 0.0088 29.1 13.3 25 366-390 98-122 (475)
185 COG4477 EzrA Negative regulato 46.8 4.6E+02 0.01 29.3 14.9 53 257-314 210-264 (570)
186 PRK14127 cell division protein 46.7 1.2E+02 0.0026 26.8 7.8 12 364-375 89-100 (109)
187 KOG0933 Structural maintenance 46.7 2.3E+02 0.0051 33.8 12.0 43 347-389 837-879 (1174)
188 PRK14146 heat shock protein Gr 46.6 37 0.0008 33.0 5.1 52 352-403 60-111 (215)
189 KOG0018 Structural maintenance 46.6 2.1E+02 0.0046 34.2 11.7 53 337-389 702-754 (1141)
190 PRK14156 heat shock protein Gr 46.6 92 0.002 29.5 7.6 49 355-403 36-84 (177)
191 cd07618 BAR_Rich1 The Bin/Amph 46.4 2.8E+02 0.0062 27.6 11.2 37 273-309 110-146 (246)
192 KOG4797 Transcriptional regula 46.4 73 0.0016 28.7 6.4 31 352-382 66-96 (123)
193 cd00632 Prefoldin_beta Prefold 46.1 1.8E+02 0.0039 24.5 9.8 37 356-392 66-102 (105)
194 PRK04778 septation ring format 45.8 4.3E+02 0.0094 28.8 14.0 6 367-372 404-409 (569)
195 cd04770 HTH_HMRTR Helix-Turn-H 45.7 1.4E+02 0.003 25.5 8.0 59 243-305 5-65 (123)
196 KOG1003 Actin filament-coating 45.6 3.1E+02 0.0067 27.0 13.9 63 332-394 74-136 (205)
197 PF00042 Globin: Globin plant 45.2 61 0.0013 26.1 5.5 40 231-270 21-74 (110)
198 TIGR03319 YmdA_YtgF conserved 45.0 3.6E+02 0.0077 29.4 12.6 16 341-356 92-107 (514)
199 PF05010 TACC: Transforming ac 44.9 3E+02 0.0066 26.7 16.5 58 258-317 48-109 (207)
200 KOG4674 Uncharacterized conser 44.7 4.6E+02 0.0099 33.3 14.5 157 219-381 21-185 (1822)
201 KOG2264 Exostosin EXT1L [Signa 44.7 1.3E+02 0.0029 33.9 9.3 17 252-268 24-40 (907)
202 PF02009 Rifin_STEVOR: Rifin/s 44.5 20 0.00044 36.4 3.1 41 317-357 31-71 (299)
203 KOG0976 Rho/Rac1-interacting s 44.1 2.9E+02 0.0062 32.6 11.9 21 292-312 338-358 (1265)
204 TIGR02338 gimC_beta prefoldin, 44.0 2E+02 0.0044 24.5 10.6 40 354-393 68-107 (110)
205 PF12777 MT: Microtubule-bindi 44.0 1.3E+02 0.0028 30.5 8.8 44 356-399 266-316 (344)
206 PF10779 XhlA: Haemolysin XhlA 43.9 1E+02 0.0022 24.6 6.4 15 361-375 35-49 (71)
207 cd00632 Prefoldin_beta Prefold 43.7 1.9E+02 0.0041 24.4 8.4 15 281-295 27-41 (105)
208 PRK00409 recombination and DNA 43.5 5E+02 0.011 29.7 14.0 17 333-349 578-594 (782)
209 PF09730 BicD: Microtubule-ass 43.3 2.9E+02 0.0062 31.7 11.9 41 348-388 78-118 (717)
210 PF10146 zf-C4H2: Zinc finger- 43.3 3.3E+02 0.0072 26.7 11.3 19 365-383 79-97 (230)
211 PF03961 DUF342: Protein of un 43.2 1.8E+02 0.0039 30.5 9.8 19 296-314 325-343 (451)
212 COG5185 HEC1 Protein involved 43.2 4.1E+02 0.0089 29.6 12.5 62 308-369 285-360 (622)
213 PF10147 CR6_interact: Growth 43.1 3.4E+02 0.0073 26.8 13.9 21 230-251 58-78 (217)
214 KOG0994 Extracellular matrix g 43.0 6.5E+02 0.014 31.1 14.8 14 380-393 1741-1754(1758)
215 PF06160 EzrA: Septation ring 43.0 2E+02 0.0043 31.4 10.4 52 342-393 382-433 (560)
216 PF09278 MerR-DNA-bind: MerR, 42.9 1.4E+02 0.0031 22.4 7.6 60 287-356 4-63 (65)
217 PF05531 NPV_P10: Nucleopolyhe 42.7 1.6E+02 0.0035 24.6 7.5 44 340-383 22-65 (75)
218 KOG1760 Molecular chaperone Pr 42.6 1.1E+02 0.0024 28.1 7.0 17 281-297 37-53 (131)
219 PF12777 MT: Microtubule-bindi 42.4 3.5E+02 0.0075 27.5 11.5 52 340-391 229-280 (344)
220 PRK13729 conjugal transfer pil 42.4 88 0.0019 34.0 7.5 47 340-389 80-126 (475)
221 PRK14150 heat shock protein Gr 42.3 56 0.0012 31.1 5.5 40 364-403 56-95 (193)
222 KOG1003 Actin filament-coating 42.2 2.5E+02 0.0055 27.5 9.8 32 282-316 117-148 (205)
223 PF07888 CALCOCO1: Calcium bin 42.1 3.6E+02 0.0077 30.0 12.1 8 283-290 155-162 (546)
224 PLN02939 transferase, transfer 42.0 3.6E+02 0.0079 32.0 12.7 31 283-313 155-185 (977)
225 PRK10869 recombination and rep 42.0 3.2E+02 0.0069 29.8 11.8 6 340-345 328-333 (553)
226 KOG0962 DNA repair protein RAD 41.9 3.3E+02 0.0071 33.3 12.5 111 283-393 787-904 (1294)
227 KOG0933 Structural maintenance 41.8 5.8E+02 0.013 30.8 14.1 48 347-394 809-856 (1174)
228 PF02403 Seryl_tRNA_N: Seryl-t 41.8 2.1E+02 0.0045 23.9 10.8 30 362-391 69-98 (108)
229 KOG2441 mRNA splicing factor/p 41.7 1.7E+02 0.0038 31.6 9.3 58 337-395 312-382 (506)
230 COG3883 Uncharacterized protei 41.5 3.2E+02 0.007 27.7 10.8 42 332-373 59-100 (265)
231 PRK10476 multidrug resistance 41.0 2E+02 0.0042 28.7 9.3 21 382-402 198-218 (346)
232 TIGR01477 RIFIN variant surfac 40.9 60 0.0013 34.0 5.8 40 318-357 55-94 (353)
233 KOG0971 Microtubule-associated 40.8 5.2E+02 0.011 31.0 13.4 39 355-393 492-530 (1243)
234 PRK14147 heat shock protein Gr 40.7 49 0.0011 31.0 4.8 15 349-363 42-56 (172)
235 KOG4568 Cytoskeleton-associate 40.6 1.4E+02 0.003 33.8 8.9 82 300-381 580-661 (664)
236 TIGR02680 conserved hypothetic 40.4 7.7E+02 0.017 30.1 15.9 15 300-314 232-246 (1353)
237 cd04785 HTH_CadR-PbrR-like Hel 40.3 1.6E+02 0.0035 25.5 7.7 27 275-302 36-62 (126)
238 PF10174 Cast: RIM-binding pro 40.2 4.4E+02 0.0094 30.5 12.8 27 332-358 343-369 (775)
239 PF03112 DUF244: Uncharacteriz 40.0 3.2E+02 0.007 25.8 9.8 77 291-381 37-120 (158)
240 cd01111 HTH_MerD Helix-Turn-He 39.5 2.4E+02 0.0053 24.0 8.7 26 275-301 36-61 (107)
241 PF06005 DUF904: Protein of un 39.4 2.1E+02 0.0046 23.4 8.2 12 303-314 9-20 (72)
242 PRK13729 conjugal transfer pil 39.4 1.2E+02 0.0026 33.1 7.9 51 340-390 70-120 (475)
243 PF02601 Exonuc_VII_L: Exonucl 39.3 3.8E+02 0.0083 26.4 11.0 14 243-256 124-137 (319)
244 cd07616 BAR_Endophilin_B1 The 39.1 3.9E+02 0.0085 26.4 11.3 35 274-308 123-157 (229)
245 PRK14164 heat shock protein Gr 39.0 44 0.00094 32.7 4.3 31 335-365 80-110 (218)
246 KOG0804 Cytoplasmic Zn-finger 39.0 3.5E+02 0.0076 29.6 11.2 13 256-268 334-346 (493)
247 PF06705 SF-assemblin: SF-asse 38.7 3.7E+02 0.008 25.9 14.4 95 276-374 65-160 (247)
248 KOG0978 E3 ubiquitin ligase in 38.6 5.3E+02 0.011 29.6 12.9 29 355-383 526-554 (698)
249 PF14942 Muted: Organelle biog 38.4 3.2E+02 0.0069 25.1 13.9 39 336-374 104-143 (145)
250 PF07200 Mod_r: Modifier of ru 38.1 2.8E+02 0.0061 24.4 11.3 61 333-393 56-129 (150)
251 PF12999 PRKCSH-like: Glucosid 38.1 1.8E+02 0.0038 27.8 8.0 16 361-376 154-169 (176)
252 PF12128 DUF3584: Protein of u 38.0 3.8E+02 0.0083 31.9 12.4 35 291-325 761-798 (1201)
253 TIGR01069 mutS2 MutS2 family p 37.8 2.4E+02 0.0052 32.2 10.4 24 221-244 434-457 (771)
254 KOG0161 Myosin class II heavy 37.7 5.8E+02 0.012 32.7 14.0 52 340-391 1084-1135(1930)
255 PRK14159 heat shock protein Gr 37.7 54 0.0012 31.0 4.6 42 361-402 38-79 (176)
256 PF13874 Nup54: Nucleoporin co 37.6 1.7E+02 0.0038 26.1 7.6 29 363-391 68-96 (141)
257 COG2433 Uncharacterized conser 37.6 4.1E+02 0.0089 30.2 11.7 17 16-33 110-126 (652)
258 COG1382 GimC Prefoldin, chaper 37.5 2.9E+02 0.0062 25.0 8.8 22 350-371 88-109 (119)
259 KOG4302 Microtubule-associated 37.5 6.4E+02 0.014 28.8 13.4 118 251-381 40-182 (660)
260 PF11338 DUF3140: Protein of u 37.5 42 0.00092 28.9 3.5 30 265-295 42-71 (92)
261 PF10018 Med4: Vitamin-D-recep 37.4 2.1E+02 0.0046 26.7 8.4 47 308-354 12-58 (188)
262 cd07620 BAR_SH3BP1 The Bin/Amp 37.2 4.4E+02 0.0095 26.7 11.0 84 274-357 111-210 (257)
263 PF03962 Mnd1: Mnd1 family; I 37.1 3.1E+02 0.0067 25.9 9.5 32 359-390 134-165 (188)
264 PF07246 Phlebovirus_NSM: Phle 37.1 2.9E+02 0.0062 28.1 9.7 38 241-279 56-93 (264)
265 PF11932 DUF3450: Protein of u 37.0 3.9E+02 0.0085 25.7 11.7 13 318-330 56-68 (251)
266 PLN02320 seryl-tRNA synthetase 36.9 2.4E+02 0.0051 31.0 9.7 15 361-375 145-159 (502)
267 TIGR02338 gimC_beta prefoldin, 36.7 2.7E+02 0.0058 23.7 8.7 9 361-369 96-104 (110)
268 COG3879 Uncharacterized protei 36.7 2E+02 0.0044 28.8 8.5 67 314-381 33-103 (247)
269 PF05008 V-SNARE: Vesicle tran 36.7 1.8E+02 0.0039 22.9 6.8 49 333-381 26-75 (79)
270 KOG0612 Rho-associated, coiled 36.4 3.3E+02 0.007 33.3 11.2 41 347-387 516-556 (1317)
271 COG0216 PrfA Protein chain rel 36.4 1.3E+02 0.0029 31.6 7.4 17 355-371 85-101 (363)
272 PF05911 DUF869: Plant protein 36.3 4.4E+02 0.0095 30.5 12.1 101 283-383 9-115 (769)
273 KOG0050 mRNA splicing protein 36.2 6.7E+02 0.014 28.2 12.9 63 252-317 456-518 (617)
274 PF04949 Transcrip_act: Transc 36.0 2.6E+02 0.0057 26.4 8.6 12 300-311 86-97 (159)
275 KOG4603 TBP-1 interacting prot 35.3 2.8E+02 0.006 27.0 8.8 43 333-376 104-146 (201)
276 PF10498 IFT57: Intra-flagella 35.0 3.4E+02 0.0074 28.3 10.2 43 337-379 271-313 (359)
277 TIGR02051 MerR Hg(II)-responsi 34.9 3E+02 0.0065 23.8 9.1 58 243-304 4-63 (124)
278 PF06160 EzrA: Septation ring 34.8 6.4E+02 0.014 27.5 15.5 51 259-314 209-261 (560)
279 KOG4438 Centromere-associated 34.7 5.7E+02 0.012 27.9 11.9 52 339-390 176-239 (446)
280 cd04779 HTH_MerR-like_sg4 Heli 34.6 3.4E+02 0.0074 24.3 9.8 25 276-301 36-60 (134)
281 cd04769 HTH_MerR2 Helix-Turn-H 34.6 1.5E+02 0.0032 25.3 6.4 72 276-358 36-108 (116)
282 PF09006 Surfac_D-trimer: Lung 34.5 85 0.0019 24.1 4.3 27 355-381 1-27 (46)
283 COG0216 PrfA Protein chain rel 34.2 3.1E+02 0.0067 29.0 9.7 14 303-316 55-68 (363)
284 KOG2077 JNK/SAPK-associated pr 34.2 2.1E+02 0.0045 32.4 8.8 91 280-379 310-406 (832)
285 PRK14562 haloacid dehalogenase 34.0 2E+02 0.0043 27.5 7.8 43 254-296 109-151 (204)
286 PF01025 GrpE: GrpE; InterPro 33.9 19 0.00042 32.0 1.0 39 332-370 18-56 (165)
287 PF05983 Med7: MED7 protein; 33.8 1.7E+02 0.0037 27.0 7.2 23 299-321 105-127 (162)
288 cd04777 HTH_MerR-like_sg1 Heli 33.8 2.8E+02 0.006 23.2 7.9 26 276-302 35-60 (107)
289 PF01166 TSC22: TSC-22/dip/bun 33.8 46 0.001 26.7 2.9 30 353-382 14-43 (59)
290 KOG0500 Cyclic nucleotide-gate 33.6 2.1E+02 0.0044 31.7 8.6 20 360-379 486-505 (536)
291 KOG1176 Acyl-CoA synthetase [L 33.6 29 0.00064 37.7 2.4 39 210-251 425-463 (537)
292 PF03233 Cauli_AT: Aphid trans 33.6 1.4E+02 0.0029 28.4 6.4 37 333-369 122-158 (163)
293 PF05816 TelA: Toxic anion res 33.6 5.3E+02 0.011 26.2 13.7 115 235-353 7-126 (333)
294 PF04012 PspA_IM30: PspA/IM30 33.5 4E+02 0.0088 24.9 14.6 37 347-383 99-135 (221)
295 PF14483 Cut8_M: Cut8 dimerisa 33.4 16 0.00035 26.5 0.3 20 231-250 16-35 (38)
296 cd07598 BAR_FAM92 The Bin/Amph 33.3 4.5E+02 0.0098 25.3 12.6 24 360-383 135-158 (211)
297 KOG0963 Transcription factor/C 33.2 4.9E+02 0.011 29.5 11.4 21 359-379 188-208 (629)
298 PF12329 TMF_DNA_bd: TATA elem 33.1 2.7E+02 0.0058 22.7 8.7 36 355-390 35-70 (74)
299 cd01040 globin Globins are hem 33.1 73 0.0016 26.3 4.2 44 231-274 24-79 (140)
300 PF14915 CCDC144C: CCDC144C pr 33.0 5.8E+02 0.013 26.5 12.5 38 355-392 209-246 (305)
301 PF12325 TMF_TATA_bd: TATA ele 33.0 2.8E+02 0.0061 24.7 8.1 60 308-367 51-110 (120)
302 cd04786 HTH_MerR-like_sg7 Heli 33.0 1.9E+02 0.0042 25.6 7.1 30 276-306 37-66 (131)
303 PF08946 Osmo_CC: Osmosensory 33.0 89 0.0019 24.0 4.2 15 341-355 24-38 (46)
304 TIGR00763 lon ATP-dependent pr 32.9 4.3E+02 0.0094 29.9 11.4 39 280-318 175-213 (775)
305 PF05529 Bap31: B-cell recepto 32.9 3.7E+02 0.008 24.8 9.2 28 348-375 163-190 (192)
306 KOG3850 Predicted membrane pro 32.8 6.7E+02 0.015 27.2 12.6 13 298-310 306-318 (455)
307 KOG3192 Mitochondrial J-type c 32.7 2.7E+02 0.0059 26.5 8.2 34 346-383 115-148 (168)
308 PF15066 CAGE1: Cancer-associa 32.5 6.2E+02 0.013 28.0 11.8 82 219-313 264-353 (527)
309 PF05701 WEMBL: Weak chloropla 32.5 6.8E+02 0.015 27.1 12.7 15 293-307 220-234 (522)
310 PRK10246 exonuclease subunit S 32.3 9E+02 0.019 28.5 14.3 18 276-293 211-228 (1047)
311 PF07544 Med9: RNA polymerase 32.2 1.7E+02 0.0037 24.1 6.2 52 300-361 30-81 (83)
312 PLN02678 seryl-tRNA synthetase 32.1 4.5E+02 0.0098 28.3 10.8 26 354-379 79-104 (448)
313 KOG0979 Structural maintenance 32.1 9.8E+02 0.021 28.9 15.0 71 219-294 117-187 (1072)
314 PF09731 Mitofilin: Mitochondr 32.0 6.7E+02 0.015 27.0 15.1 35 219-253 210-244 (582)
315 KOG4552 Vitamin-D-receptor int 31.4 5.5E+02 0.012 25.8 12.4 67 301-374 50-120 (272)
316 PF10191 COG7: Golgi complex c 31.4 6.7E+02 0.015 28.6 12.5 49 266-315 46-94 (766)
317 cd04782 HTH_BltR Helix-Turn-He 31.3 2.2E+02 0.0048 23.6 6.8 26 275-301 36-61 (97)
318 COG0576 GrpE Molecular chapero 31.2 94 0.002 29.5 5.1 50 354-403 44-93 (193)
319 PF13863 DUF4200: Domain of un 31.2 3.3E+02 0.0071 23.1 12.2 44 337-380 65-108 (126)
320 PRK13752 putative transcriptio 31.0 3.8E+02 0.0082 24.2 8.7 59 242-304 11-71 (144)
321 PF15397 DUF4618: Domain of un 31.0 5.7E+02 0.012 25.8 12.7 16 259-274 7-22 (258)
322 COG1422 Predicted membrane pro 30.7 1.8E+02 0.0038 28.5 6.8 20 251-270 44-63 (201)
323 cd07651 F-BAR_PombeCdc15_like 30.7 4.8E+02 0.01 24.8 13.1 31 357-393 186-216 (236)
324 KOG0104 Molecular chaperones G 30.5 7.8E+02 0.017 29.0 12.6 34 270-309 646-679 (902)
325 cd04789 HTH_Cfa Helix-Turn-Hel 30.5 3.3E+02 0.0071 22.8 8.0 26 275-301 36-61 (102)
326 KOG4403 Cell surface glycoprot 30.4 7.8E+02 0.017 27.2 14.0 38 276-313 237-274 (575)
327 PTZ00419 valyl-tRNA synthetase 30.3 1.5E+02 0.0033 34.5 7.5 29 360-388 964-992 (995)
328 KOG4438 Centromere-associated 30.3 7.2E+02 0.016 27.1 11.7 65 248-318 206-275 (446)
329 TIGR02231 conserved hypothetic 30.2 4.2E+02 0.0092 28.2 10.3 22 357-378 149-170 (525)
330 PRK13169 DNA replication intia 30.2 2.9E+02 0.0064 24.4 7.6 10 370-379 39-48 (110)
331 cd07594 BAR_Endophilin_B The B 30.2 4.5E+02 0.0097 25.8 9.7 35 274-308 123-157 (229)
332 PLN02939 transferase, transfer 30.1 8.3E+02 0.018 29.2 13.1 116 278-393 174-305 (977)
333 PF14257 DUF4349: Domain of un 30.0 2.2E+02 0.0048 27.4 7.5 19 231-249 65-83 (262)
334 KOG2391 Vacuolar sorting prote 29.9 2.4E+02 0.0053 29.8 8.1 34 332-365 242-275 (365)
335 KOG4657 Uncharacterized conser 29.8 5.9E+02 0.013 25.6 14.4 43 330-372 91-133 (246)
336 KOG0570 Transcriptional coacti 29.7 4E+02 0.0087 26.4 9.1 28 246-274 71-101 (223)
337 PF06248 Zw10: Centromere/kine 29.7 2.9E+02 0.0062 30.0 9.0 89 230-321 27-116 (593)
338 PF03999 MAP65_ASE1: Microtubu 29.6 18 0.00038 39.6 0.0 126 258-398 167-303 (619)
339 PF06156 DUF972: Protein of un 29.5 2.7E+02 0.0058 24.3 7.2 11 363-373 46-56 (107)
340 PF05667 DUF812: Protein of un 29.4 7.5E+02 0.016 27.7 12.2 46 255-309 485-530 (594)
341 PF05384 DegS: Sensor protein 29.3 4.8E+02 0.01 24.4 14.3 45 340-384 78-122 (159)
342 cd04783 HTH_MerR1 Helix-Turn-H 29.0 3.8E+02 0.0082 23.1 8.9 26 275-301 36-61 (126)
343 TIGR03017 EpsF chain length de 28.9 4.3E+02 0.0093 27.1 9.8 15 300-314 173-187 (444)
344 KOG4643 Uncharacterized coiled 28.9 1E+03 0.023 28.8 13.4 45 342-386 470-514 (1195)
345 cd00890 Prefoldin Prefoldin is 28.6 2.3E+02 0.0049 23.9 6.6 15 281-295 30-44 (129)
346 PTZ00046 rifin; Provisional 28.5 1.5E+02 0.0033 31.1 6.5 77 317-393 51-139 (358)
347 PF04849 HAP1_N: HAP1 N-termin 28.5 6.1E+02 0.013 26.3 10.6 93 298-393 160-253 (306)
348 KOG0161 Myosin class II heavy 28.0 1.4E+03 0.031 29.5 15.6 33 283-315 1314-1346(1930)
349 PF09403 FadA: Adhesion protei 27.8 4.6E+02 0.0099 23.7 8.6 32 363-394 89-120 (126)
350 PF04912 Dynamitin: Dynamitin 27.7 7E+02 0.015 25.8 13.8 14 360-373 350-363 (388)
351 PF09731 Mitofilin: Mitochondr 27.6 8E+02 0.017 26.4 14.7 8 368-375 376-383 (582)
352 PLN02281 chlorophyllide a oxyg 27.6 2E+02 0.0042 31.9 7.3 58 303-375 105-164 (536)
353 KOG3809 Microtubule-binding pr 27.5 7.8E+02 0.017 27.3 11.4 122 229-376 441-576 (583)
354 cd01107 HTH_BmrR Helix-Turn-He 27.5 3.2E+02 0.007 23.0 7.3 67 275-357 37-103 (108)
355 PF02994 Transposase_22: L1 tr 27.3 1.9E+02 0.0042 29.9 7.0 14 361-374 173-186 (370)
356 PRK14149 heat shock protein Gr 27.3 99 0.0021 29.7 4.5 33 334-366 45-77 (191)
357 TIGR03752 conj_TIGR03752 integ 27.2 3.9E+02 0.0084 29.3 9.3 6 278-283 42-47 (472)
358 PF05483 SCP-1: Synaptonemal c 27.2 9.3E+02 0.02 28.0 12.4 62 330-391 231-292 (786)
359 PF06005 DUF904: Protein of un 27.1 3.5E+02 0.0076 22.1 9.8 11 358-368 58-68 (72)
360 PF00769 ERM: Ezrin/radixin/mo 27.0 5.3E+02 0.011 25.3 9.6 49 327-375 77-125 (246)
361 PRK05431 seryl-tRNA synthetase 27.0 7E+02 0.015 26.3 11.1 18 297-314 41-58 (425)
362 KOG3859 Septins (P-loop GTPase 26.8 5.9E+02 0.013 26.9 10.1 22 277-299 288-309 (406)
363 PLN02372 violaxanthin de-epoxi 26.7 7.1E+02 0.015 27.2 11.0 24 361-384 426-449 (455)
364 KOG1772 Vacuolar H+-ATPase V1 26.7 4.7E+02 0.01 23.4 10.5 60 321-383 31-95 (108)
365 cd01108 HTH_CueR Helix-Turn-He 26.6 4.3E+02 0.0092 22.9 8.1 59 243-305 5-65 (127)
366 PF07798 DUF1640: Protein of u 26.5 5.1E+02 0.011 23.8 14.3 18 278-295 16-33 (177)
367 PF12128 DUF3584: Protein of u 26.5 1.2E+03 0.026 28.0 14.9 36 234-269 368-403 (1201)
368 cd04784 HTH_CadR-PbrR Helix-Tu 26.5 3E+02 0.0064 23.8 7.0 26 275-301 36-61 (127)
369 PF09789 DUF2353: Uncharacteri 26.4 3.7E+02 0.008 27.9 8.7 28 365-392 201-228 (319)
370 KOG0978 E3 ubiquitin ligase in 26.3 1E+03 0.023 27.4 14.5 58 332-389 566-623 (698)
371 KOG2991 Splicing regulator [RN 26.2 5.3E+02 0.012 26.6 9.5 48 347-394 137-197 (330)
372 PF00015 MCPsignal: Methyl-acc 26.2 4.7E+02 0.01 23.3 11.7 40 355-394 172-211 (213)
373 PRK01194 V-type ATP synthase s 26.1 5.5E+02 0.012 24.0 12.5 67 328-394 27-97 (185)
374 COG5185 HEC1 Protein involved 26.0 5.4E+02 0.012 28.7 10.1 39 355-393 318-356 (622)
375 PF13166 AAA_13: AAA domain 26.0 8.9E+02 0.019 26.4 15.6 44 350-393 428-471 (712)
376 PF04124 Dor1: Dor1-like famil 25.9 70 0.0015 32.3 3.4 81 210-298 108-188 (338)
377 PF03148 Tektin: Tektin family 25.8 6.1E+02 0.013 26.4 10.3 14 303-316 249-262 (384)
378 PF09738 DUF2051: Double stran 25.6 3.5E+02 0.0076 27.7 8.3 17 298-314 112-128 (302)
379 KOG2008 BTK-associated SH3-dom 25.5 8.4E+02 0.018 26.0 12.3 22 361-382 209-230 (426)
380 PF15254 CCDC14: Coiled-coil d 25.4 1.2E+03 0.025 27.6 16.0 31 320-350 482-512 (861)
381 KOG3433 Protein involved in me 25.3 6.6E+02 0.014 24.7 10.7 54 337-390 121-182 (203)
382 PF11500 Cut12: Spindle pole b 25.1 5.8E+02 0.012 23.9 9.2 7 242-248 54-60 (152)
383 cd07596 BAR_SNX The Bin/Amphip 25.1 5E+02 0.011 23.2 14.0 25 355-379 147-171 (218)
384 KOG0018 Structural maintenance 25.1 8.9E+02 0.019 29.4 12.2 56 338-393 696-751 (1141)
385 PRK10947 global DNA-binding tr 25.0 2.9E+02 0.0063 25.2 6.9 6 300-305 23-28 (135)
386 PLN02943 aminoacyl-tRNA ligase 24.9 2E+02 0.0042 33.6 7.1 29 360-388 924-952 (958)
387 PF04880 NUDE_C: NUDE protein, 24.6 1.2E+02 0.0027 28.5 4.6 13 302-314 4-16 (166)
388 PF07439 DUF1515: Protein of u 24.6 4.6E+02 0.0099 23.6 7.8 11 355-365 56-66 (112)
389 PF06120 Phage_HK97_TLTM: Tail 24.5 4.5E+02 0.0097 27.1 8.8 72 316-393 36-107 (301)
390 TIGR01612 235kDa-fam reticuloc 24.5 1.2E+03 0.026 31.0 13.6 61 329-389 555-615 (2757)
391 KOG4348 Adaptor protein CMS/SE 24.3 3.1E+02 0.0066 30.3 7.8 15 370-384 611-625 (627)
392 cd04790 HTH_Cfa-like_unk Helix 24.2 5.7E+02 0.012 23.6 9.2 28 274-302 36-63 (172)
393 KOG4460 Nuclear pore complex, 24.2 9.4E+02 0.02 27.4 11.5 42 332-373 588-629 (741)
394 PF13870 DUF4201: Domain of un 24.1 5.5E+02 0.012 23.4 15.0 68 332-399 77-144 (177)
395 PRK07090 class II aldolase/add 24.1 89 0.0019 30.7 3.7 72 237-308 180-252 (260)
396 TIGR02044 CueR Cu(I)-responsiv 24.1 4.7E+02 0.01 22.6 7.9 59 242-304 4-64 (127)
397 PF15188 CCDC-167: Coiled-coil 24.0 1.8E+02 0.0039 24.8 5.0 58 321-378 8-68 (85)
398 TIGR01005 eps_transp_fam exopo 24.0 9.1E+02 0.02 26.9 11.8 15 300-314 196-210 (754)
399 PF08336 P4Ha_N: Prolyl 4-Hydr 24.0 2.9E+02 0.0064 24.1 6.6 12 382-393 68-79 (134)
400 PRK02195 V-type ATP synthase s 24.0 5.1E+02 0.011 24.7 8.6 33 282-314 117-149 (201)
401 PF12761 End3: Actin cytoskele 23.9 6.2E+02 0.014 24.6 9.2 21 222-242 17-37 (195)
402 PF14193 DUF4315: Domain of un 23.8 2.2E+02 0.0047 24.0 5.4 23 351-373 13-35 (83)
403 PF09969 DUF2203: Uncharacteri 23.7 2.7E+02 0.0057 24.7 6.3 21 294-314 6-26 (120)
404 TIGR01837 PHA_granule_1 poly(h 23.7 4.4E+02 0.0096 23.1 7.6 14 378-391 100-113 (118)
405 PRK11519 tyrosine kinase; Prov 23.6 1.1E+03 0.023 26.5 14.4 15 281-295 281-295 (719)
406 PF04286 DUF445: Protein of un 23.5 6.9E+02 0.015 24.3 15.3 59 252-311 181-244 (367)
407 PRK11281 hypothetical protein; 23.5 1E+03 0.022 28.8 12.5 27 282-308 64-90 (1113)
408 KOG2264 Exostosin EXT1L [Signa 23.5 3.5E+02 0.0076 30.8 8.3 24 333-356 97-120 (907)
409 TIGR00293 prefoldin, archaeal 23.4 2.8E+02 0.0061 23.7 6.3 33 325-357 86-118 (126)
410 PF07851 TMPIT: TMPIT-like pro 23.2 7.4E+02 0.016 25.9 10.2 18 334-351 41-58 (330)
411 PF04899 MbeD_MobD: MbeD/MobD 23.2 4.2E+02 0.0092 21.7 8.9 42 352-393 27-68 (70)
412 PF12126 DUF3583: Protein of u 23.2 8.8E+02 0.019 25.4 11.0 17 363-379 71-87 (324)
413 PRK13428 F0F1 ATP synthase sub 23.2 9.3E+02 0.02 25.6 13.3 32 266-297 17-48 (445)
414 PF05478 Prominin: Prominin; 23.1 9E+02 0.019 27.6 11.7 87 276-375 617-703 (806)
415 PF10498 IFT57: Intra-flagella 23.1 8.8E+02 0.019 25.4 11.0 11 248-258 211-221 (359)
416 TIGR01730 RND_mfp RND family e 22.8 4.5E+02 0.0098 25.0 8.2 17 386-402 128-144 (322)
417 cd07595 BAR_RhoGAP_Rich-like T 22.8 7.4E+02 0.016 24.4 11.1 38 273-310 110-147 (244)
418 PF14542 Acetyltransf_CG: GCN5 22.8 74 0.0016 25.6 2.4 26 219-245 51-76 (78)
419 PRK00578 prfB peptide chain re 22.7 9.2E+02 0.02 25.4 11.3 33 281-314 7-39 (367)
420 cd04787 HTH_HMRTR_unk Helix-Tu 22.6 5.2E+02 0.011 22.6 8.0 25 276-301 37-61 (133)
421 cd01106 HTH_TipAL-Mta Helix-Tu 22.5 1.7E+02 0.0038 24.3 4.7 61 243-307 5-67 (103)
422 PF13514 AAA_27: AAA domain 22.5 1.1E+03 0.024 27.8 12.6 34 346-379 736-769 (1111)
423 PF13935 Ead_Ea22: Ead/Ea22-li 22.4 5.6E+02 0.012 22.9 8.4 13 361-373 127-139 (139)
424 PRK05014 hscB co-chaperone Hsc 22.4 6.3E+02 0.014 23.4 12.8 11 238-248 29-39 (171)
425 PRK12705 hypothetical protein; 22.4 8.7E+02 0.019 26.7 11.0 18 340-357 92-109 (508)
426 KOG0612 Rho-associated, coiled 22.4 9.3E+02 0.02 29.7 11.8 41 333-373 512-552 (1317)
427 PF15070 GOLGA2L5: Putative go 22.3 9.7E+02 0.021 27.0 11.5 20 364-383 119-138 (617)
428 COG4467 Regulator of replicati 22.3 3.2E+02 0.0069 24.6 6.3 43 315-357 5-47 (114)
429 KOG3859 Septins (P-loop GTPase 22.3 9.5E+02 0.021 25.4 11.5 27 347-373 349-375 (406)
430 PRK05729 valS valyl-tRNA synth 22.2 2.5E+02 0.0054 32.2 7.2 28 360-387 846-873 (874)
431 PRK09841 cryptic autophosphory 22.1 9.9E+02 0.022 26.8 11.7 18 301-318 256-273 (726)
432 PF10359 Fmp27_WPPW: RNA pol I 22.1 3.1E+02 0.0068 29.3 7.5 16 300-315 165-180 (475)
433 TIGR01000 bacteriocin_acc bact 22.1 9.2E+02 0.02 25.2 11.5 39 364-402 288-326 (457)
434 KOG0243 Kinesin-like protein [ 22.0 7.4E+02 0.016 29.8 10.8 18 280-297 371-388 (1041)
435 KOG4360 Uncharacterized coiled 21.9 1.2E+03 0.025 26.4 13.9 27 232-262 159-185 (596)
436 KOG2896 UV radiation resistanc 21.9 1E+03 0.022 25.6 14.1 64 337-400 118-185 (377)
437 cd04776 HTH_GnyR Helix-Turn-He 21.9 2E+02 0.0043 24.9 5.1 10 289-298 16-25 (118)
438 PF05622 HOOK: HOOK protein; 21.9 30 0.00065 38.3 0.0 34 358-391 389-422 (713)
439 PRK10698 phage shock protein P 21.8 7.3E+02 0.016 23.9 10.6 92 312-403 86-188 (222)
440 PF11291 DUF3091: Protein of u 21.7 1.7E+02 0.0038 25.6 4.6 48 270-318 45-92 (100)
441 TIGR01010 BexC_CtrB_KpsE polys 21.6 8.3E+02 0.018 24.5 11.2 24 244-267 133-156 (362)
442 PF07028 DUF1319: Protein of u 21.6 5.8E+02 0.013 23.4 8.0 39 276-315 15-53 (126)
443 PF09766 FimP: Fms-interacting 21.6 3.7E+02 0.008 27.8 7.7 48 340-390 105-152 (355)
444 PF01093 Clusterin: Clusterin; 21.5 3.8E+02 0.0083 29.0 8.0 14 384-397 106-119 (436)
445 PF14735 HAUS4: HAUS augmin-li 21.5 8E+02 0.017 24.3 13.8 54 252-315 104-157 (238)
446 PF04129 Vps52: Vps52 / Sac2 f 21.4 8.4E+02 0.018 26.3 10.6 57 329-385 25-81 (508)
447 KOG3088 Secretory carrier memb 21.4 1.6E+02 0.0034 30.5 4.9 21 337-357 65-85 (313)
448 PRK10787 DNA-binding ATP-depen 21.2 3.2E+02 0.0069 31.3 7.7 38 279-316 176-213 (784)
449 KOG3478 Prefoldin subunit 6, K 21.2 4E+02 0.0087 24.1 6.8 47 321-374 65-111 (120)
450 PF06295 DUF1043: Protein of u 21.2 4.6E+02 0.01 23.2 7.3 43 337-382 30-72 (128)
451 COG0172 SerS Seryl-tRNA synthe 21.1 7.4E+02 0.016 26.8 9.9 22 359-380 74-95 (429)
452 PF06008 Laminin_I: Laminin Do 21.1 7.6E+02 0.017 23.9 15.5 20 275-294 147-166 (264)
453 PF10241 KxDL: Uncharacterized 20.9 4.9E+02 0.011 21.6 8.3 66 328-396 14-79 (88)
454 KOG3046 Transcription factor, 20.7 7.1E+02 0.015 23.4 9.6 41 231-274 21-61 (147)
455 PRK15422 septal ring assembly 20.7 5.3E+02 0.011 21.9 9.4 16 354-369 61-76 (79)
456 PF09403 FadA: Adhesion protei 20.7 6.3E+02 0.014 22.8 12.2 22 362-383 95-116 (126)
457 PF11559 ADIP: Afadin- and alp 20.7 5.9E+02 0.013 22.5 14.7 15 280-294 30-44 (151)
458 PRK06664 fliD flagellar hook-a 20.4 6E+02 0.013 28.7 9.5 9 292-300 521-529 (661)
459 PHA02675 ORF104 fusion protein 20.4 5.6E+02 0.012 22.2 7.2 30 363-392 54-83 (90)
460 PF03179 V-ATPase_G: Vacuolar 20.3 5.2E+02 0.011 21.6 10.0 70 321-390 29-101 (105)
461 PF05103 DivIVA: DivIVA protei 20.3 72 0.0016 27.1 2.0 11 292-302 5-15 (131)
462 PF14712 Snapin_Pallidin: Snap 20.3 4.7E+02 0.01 21.1 9.0 12 303-314 12-23 (92)
463 PF07200 Mod_r: Modifier of ru 20.2 6E+02 0.013 22.3 9.6 34 339-372 55-88 (150)
464 COG5493 Uncharacterized conser 20.2 8.7E+02 0.019 24.2 9.7 34 347-383 78-111 (231)
465 PF15254 CCDC14: Coiled-coil d 20.1 7.2E+02 0.016 29.2 10.0 33 361-393 481-513 (861)
466 COG0419 SbcC ATPase involved i 20.0 1.4E+03 0.029 26.4 15.3 10 302-311 583-592 (908)
467 TIGR02971 heterocyst_DevB ABC 20.0 8.2E+02 0.018 23.9 10.4 25 378-402 190-214 (327)
No 1
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=100.00 E-value=1.2e-62 Score=473.03 Aligned_cols=216 Identities=50% Similarity=0.738 Sum_probs=210.3
Q ss_pred CCCCCCceeeeccccccCC---CCCcccccccccce-eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHH
Q 015660 186 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE 261 (403)
Q Consensus 186 ~~~~es~~fs~~~~~~~~g---~~d~eE~~Sv~~et-v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~ 261 (403)
.-|++|++|+|++|.+|.| .++++|++|+++++ |+||||||++||+++|++||+||||||+||+++|++||++||+
T Consensus 50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe 129 (269)
T PF05278_consen 50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE 129 (269)
T ss_pred CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence 4678999999999999886 46778999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 015660 262 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL 341 (403)
Q Consensus 262 ~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~EL 341 (403)
+||+||++||++|+++||+++|.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|+++++.++..+.||
T Consensus 130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL 209 (269)
T PF05278_consen 130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL 209 (269)
T ss_pred HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 015660 342 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 401 (403)
Q Consensus 342 Ee~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~ 401 (403)
+.++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~ 269 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE 269 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.73 E-value=4e-17 Score=154.80 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=134.3
Q ss_pred CccccccccccccCCCCCCCCCCCCCceeeeccccccCCCCCccccc-c--cc-cceeEe----ccEEeeccchHHHHHH
Q 015660 166 KVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQ-S--VI-SDSVSV----GKYHVRASISSILQSI 237 (403)
Q Consensus 166 ~~~~~~p~~~~~~~~g~~~~~~~~es~~fs~~~~~~~~g~~d~eE~~-S--v~-~etv~V----nGfqVl~Sqv~~v~~I 237 (403)
|-..+.|++...+..|+++.. ++...|+-+.+.+.-+..|..+.. + .+ .+..++ |||+|+++|++++..|
T Consensus 94 g~~~~~~~~~~~~~~~g~~~~--~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~ 171 (297)
T KOG1987|consen 94 GFGKMLPLTLLIDCSNGFLVA--HKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERI 171 (297)
T ss_pred CcccccChHHhhcccCcEEEc--CceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHh
Confidence 345678888888887887666 455555555444433332221110 0 00 111334 9999999999999999
Q ss_pred HhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660 238 ISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 238 FeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~--~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare 315 (403)
|++||++|+.|+.+++++|..||+.||++|++++ +++ +.++..++.+|..++.+++.+||+||||.++++++.+.++
T Consensus 172 ~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~ 250 (297)
T KOG1987|consen 172 FEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK 250 (297)
T ss_pred hcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999 888 9999999999999999999999999999999999988873
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 316 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 316 ~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
.+...+.+.+++++++..+..+......
T Consensus 251 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (297)
T KOG1987|consen 251 --------------KDLWYEIRLQELEEELKSLKDKCSDLEG 278 (297)
T ss_pred --------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 1134556666667777777777666544
No 3
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=98.05 E-value=0.0003 Score=66.03 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 015660 258 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 337 (403)
Q Consensus 258 ~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~ 337 (403)
..|=...+|++...+.-+.+ +...+..-..+|.+|+.-||+|.-|+.||+++...+. .+..+.+.++..+..++..
T Consensus 47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888444 8999999999999999999999999999999887663 2222222212111122211
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 338 ---KKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 338 ---~~ELEe~leeL~~kekev~d~----~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
.+++|+.+.+|.++-.++.+. +..-++....+.+|+-+...|.+.+.+++.+
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333221 1123334455666666666666666655543
No 4
>PRK11637 AmiB activator; Provisional
Probab=91.21 E-value=11 Score=39.07 Aligned_cols=55 Identities=25% Similarity=0.391 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 336 STKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 336 ~~~~ELEe~leeL~~keke----v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
....+++.+..+|....++ +..++..+.+....|.+|+....+|.+.|..++-..
T Consensus 198 ~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~ 256 (428)
T PRK11637 198 TLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREA 256 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 566666666667777777777777777776655433
No 5
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.47 E-value=2.1 Score=42.41 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..++.--+.+++-+.+.+.
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3334455566667777777777777777777777777777666655666666655543
No 6
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.33 E-value=15 Score=37.38 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl 398 (403)
.+..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344445566666666666666666666666666666666666666666666666666666665554
No 7
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.31 E-value=14 Score=37.18 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.++.++++|.+.-.++..+.+++.+.+.++.+..+++..+..+...+...|
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333333333333333333333333
No 8
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.38 E-value=6.2 Score=35.46 Aligned_cols=37 Identities=14% Similarity=0.411 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
++.+.++++-+.++..+...+...|..|..|+...++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3366777777777777777777777777777776654
No 9
>PRK11637 AmiB activator; Provisional
Probab=87.91 E-value=7.5 Score=40.13 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q 015660 254 SMRAYYLECLCSVVQ 268 (403)
Q Consensus 254 ~lRs~ym~~Ll~LIe 268 (403)
.+|-..+-+|+.++-
T Consensus 19 ~~~~~~~~~ll~~~~ 33 (428)
T PRK11637 19 AIRPILYASVLSAGV 33 (428)
T ss_pred hhhhHHHHHHHHHHH
Confidence 344444444444333
No 10
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.70 E-value=11 Score=45.06 Aligned_cols=51 Identities=4% Similarity=0.114 Sum_probs=41.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA 326 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~ 326 (403)
-.+++.+|..+...+..|++..=+++=|+.++..+......++.+......
T Consensus 215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~ 265 (1353)
T TIGR02680 215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR 265 (1353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999988888888888888777766666664333
No 11
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.54 E-value=11 Score=42.40 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred eeccchHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 015660 226 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI 298 (403)
Q Consensus 226 Vl~Sqv~~v~~IFeKHpD--IA---snf~lKs~~lRs~ym~~Ll~LIetL~~spl--~eLS~~dL~ea~~~L~dL~~agf 298 (403)
..+++...++.||.+-.. |. ++ +..++.- .-.+++|..-++.|..--+ +++-..+|..-...|....+.+
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Q- 577 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQ- 577 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 358899999999986422 22 22 2222222 2245667777777754322 2334455555555566555543
Q ss_pred chhhhhhHHHHHHHH----HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 299 DVDWLRNILNEISEA----IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 355 (403)
Q Consensus 299 KvdWL~~KLeEV~Ea----re~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev 355 (403)
+.||..--+++... .++.+++..+....+...++++...+.+...+-.|+..|+++
T Consensus 578 -l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~ 637 (717)
T PF10168_consen 578 -LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREF 637 (717)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 33333222222211 123333444444444444444444444444333344444443
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.08 E-value=13 Score=35.21 Aligned_cols=12 Identities=42% Similarity=0.496 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHH
Q 015660 301 DWLRNILNEISE 312 (403)
Q Consensus 301 dWL~~KLeEV~E 312 (403)
+=|+.+++++.+
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 556666666555
No 13
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=86.52 E-value=6.7 Score=36.78 Aligned_cols=61 Identities=5% Similarity=0.067 Sum_probs=41.0
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660 242 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305 (403)
Q Consensus 242 pDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~ 305 (403)
+++|.-+.+....+|.+|=.-++. +..-. +--+-.+++|| .....+..+..+|+.+.=++.
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~ 64 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQK 64 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHH
Confidence 355666666666777776655542 11111 12477899999 789999999999998876544
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.30 E-value=19 Score=37.74 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
...+..+++...++...+.++..+..+..+...+|.+++.+..++
T Consensus 347 ~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 347 STNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444333
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.61 E-value=13 Score=38.79 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=41.4
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH-------HHH
Q 015660 295 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAK-------TKA 367 (403)
Q Consensus 295 ~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e-------~k~ 367 (403)
.+.-++++|+..+.++....+-+.. .++..+......+...++++++...+..+.+.++..++..+.+ ..+
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~--~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~ 255 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNK--NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA 255 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4455566777777776655532211 1111111122233344444444444444444444444444433 344
Q ss_pred HHHHHHHhhhhHHHHHHHhhhh
Q 015660 368 RLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 368 RL~~LE~ess~l~~~~~~~kSK 389 (403)
.|..++....+++..+..++.-
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444433
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.34 E-value=9.3 Score=42.86 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=34.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 015660 326 AKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 326 ~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
+++...+.+..++.+++.++++|.+.+.+.+.++++-+.+.+|+.++.+.-..|.+++..+
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666666666655555555555555555555555555554443
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.89 E-value=6.4 Score=40.92 Aligned_cols=60 Identities=23% Similarity=0.229 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 330 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 330 ~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
.++++++....+..++++|++-+++++.-..++.+++++ ||-+...|.+.++-+++||+.
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence 344555555566667777888888777755555555544 455667777777778888876
No 18
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=7.9 Score=34.22 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=24.6
Q ss_pred HHHHHHHHHH-HHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 340 ELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 340 ELEe~leeL~-~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
.|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus 69 ~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 69 KIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554444 234557777888888888888888764
No 19
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.94 E-value=17 Score=37.05 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=45.5
Q ss_pred hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 304 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 304 ~~KLeEV~Ear-e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
+..|.||-|.. +-+-..++|+.+|.+.--.+..++.+|+++-+.|+++.++..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788887765 5566788999999998888999999999999999999888765
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.86 E-value=42 Score=40.93 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=72.8
Q ss_pred EEeeccchHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 015660 224 YHVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW 302 (403)
Q Consensus 224 fqVl~Sqv~~v~~IFeK-HpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW 302 (403)
.+|-.+.-...+++|.. -..+|+.| .+++.=|...++=.++.=..+...- ..|..+...|..+.+ .+.=
T Consensus 249 ~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~------kkLe~tE~nL~rI~d---iL~E 318 (1486)
T PRK04863 249 IRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR------RQLAAEQYRLVEMAR---ELAE 318 (1486)
T ss_pred HHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHH
Confidence 34455556666666654 35677777 6666666666666655443333322 222222222222221 1233
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 303 LRNILNEISEAIEFSTQHQTIDAAKA-------NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 303 L~~KLeEV~Eare~~~~~~~~e~~K~-------~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
|..+|..+....+-+.++..+..+.. .....++.+..++++..+.|...+.++.+..+++.+..+++..|+..
T Consensus 319 Le~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 319 LNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433211 11223333444444444445555444555555555555555555544
Q ss_pred hhhHHHHHHHhhhhh
Q 015660 376 SNRLEQIIQATQSKV 390 (403)
Q Consensus 376 ss~l~~~~~~~kSKV 390 (403)
..++.+.+..++.++
T Consensus 399 Laelqqel~elQ~el 413 (1486)
T PRK04863 399 LADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.52 E-value=61 Score=36.41 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=10.5
Q ss_pred eEeccEEeeccchHHHHHHHhhcc
Q 015660 219 VSVGKYHVRASISSILQSIISRYG 242 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHp 242 (403)
..+||..+... -+..+|...|
T Consensus 112 ~~~~~~~~~~~---~~~~~l~~~~ 132 (1179)
T TIGR02168 112 YFINGQPCRLK---DIQDLFLDTG 132 (1179)
T ss_pred eeECCCcccHH---HHHHHHhccC
Confidence 45677655222 2455555553
No 22
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.22 E-value=52 Score=37.19 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=25.4
Q ss_pred eEeccEEeeccchHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE 269 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIA-----------snf~lKs~~lRs~ym~~Ll~LIet 269 (403)
..+||-.|. ..-+..+|..+|=.. ..|...+|.-|..|++-+.++...
T Consensus 110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~ 168 (1164)
T TIGR02169 110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF 168 (1164)
T ss_pred EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence 667776663 344566666544111 122333566666677777664433
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=83.00 E-value=32 Score=38.39 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.3
Q ss_pred hhhHHHHHHHH
Q 015660 303 LRNILNEISEA 313 (403)
Q Consensus 303 L~~KLeEV~Ea 313 (403)
|+.+++.+...
T Consensus 494 ~~~~~e~l~~~ 504 (880)
T PRK02224 494 VEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=82.23 E-value=27 Score=39.19 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=9.1
Q ss_pred HhHHHhcCcchhhhhhHHHHHH
Q 015660 290 LKDVESAQIDVDWLRNILNEIS 311 (403)
Q Consensus 290 L~dL~~agfKvdWL~~KLeEV~ 311 (403)
+..++...=++.+++.++.++.
T Consensus 321 l~~~e~~~~~~e~~~~~~~e~~ 342 (895)
T PRK01156 321 INKYHAIIKKLSVLQKDYNDYI 342 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 25
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.85 E-value=17 Score=36.80 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
.+....++||+.|-+.+...+++...|+.+.+.+-.-|..+=.+...+.+-+..++-|+++..+
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999887643
No 26
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=81.36 E-value=24 Score=38.05 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 015660 248 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT 279 (403)
Q Consensus 248 f~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS 279 (403)
..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus 345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~ 375 (507)
T PF05600_consen 345 TLLENPETRNQFLDELLELEAFLKQRL-YELS 375 (507)
T ss_pred hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 568899999999999999977776644 6665
No 27
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.14 E-value=30 Score=28.89 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=12.7
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 358 LKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 358 ~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
+.+++.+++..|..+|.....++..+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544433
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.01 E-value=65 Score=32.44 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
...+|+..-.+|.+.+.++..+..++.+.+++..++..+-..+
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444434444444444444444444444444444444333
No 29
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=80.70 E-value=27 Score=30.24 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=21.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
+-.+.++|..+..+.. |++.||-|+=.+.-|+
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~ 66 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD 66 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence 5667777776655544 8889998765554444
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=80.45 E-value=29 Score=38.72 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=18.7
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 015660 233 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV 266 (403)
Q Consensus 233 ~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~L 266 (403)
+.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus 129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL 161 (880)
T ss_pred hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence 3444555666664443 34566666666666665
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.95 E-value=10 Score=37.81 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q 015660 304 RNILNEISE 312 (403)
Q Consensus 304 ~~KLeEV~E 312 (403)
+..++|+++
T Consensus 134 ke~~ee~ke 142 (290)
T COG4026 134 KEDYEELKE 142 (290)
T ss_pred HHHHHHHHH
Confidence 334444443
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.93 E-value=23 Score=38.87 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHhhhhHHH
Q 015660 360 ESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~ 381 (403)
.+.++.+.|+.+||.....|.+
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444433
No 33
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=79.88 E-value=75 Score=32.76 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=44.2
Q ss_pred chHHHHHHHhhccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCc
Q 015660 230 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI 298 (403)
Q Consensus 230 qv~~v~~IFeKHpDIA--snf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agf 298 (403)
....|+.|++=-=+|- +++++.++.||. |+..|.++..++..-| ++..|+..+..|...-|
T Consensus 138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d~ 200 (307)
T PF15112_consen 138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSDW 200 (307)
T ss_pred cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhhh
Confidence 6778888887666663 556666777775 7788888888887777 67777777777765433
No 34
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.66 E-value=50 Score=30.25 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC---cchhhhhhHH
Q 015660 252 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL 307 (403)
Q Consensus 252 s~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~ag---fKvdWL~~KL 307 (403)
--..|++|-++.+-|++.+...- .++...= ......+.++.... ++-+||+.-|
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~~l-~~~~~~~~~vd~~~~a~i~e~~L~~el 104 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLL-EEYQEAL-KFIKDFQSEVDSSSNAIIDEDFLESEL 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhHHHHHHHHcccccccccHHHHHHHH
Confidence 34567777777777777765554 4443333 55555555555433 7888888443
No 35
>PRK14148 heat shock protein GrpE; Provisional
Probab=79.33 E-value=3.8 Score=39.19 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+...+.++.++++++.++++++.++..+..++.+++.-=+....+|....|+.+||
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667778888899999999999999999988899999998888888776
No 36
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.17 E-value=34 Score=30.04 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
.....++.+|++-+..++..||.....|.+.+..+..+++...
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667779999999999999999999999999999888764
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.83 E-value=54 Score=38.49 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=56.3
Q ss_pred eEeccEEeeccchHHHHHHHhh------------cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHH
Q 015660 219 VSVGKYHVRASISSILQSIISR------------YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEM 286 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeK------------HpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea 286 (403)
..|||-.|..+ -+..+|.. -|+|..=...+....|. |++=..++...-... +.=....
T Consensus 112 Y~INg~~~~~~---dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~-iiEEaaGv~~y~~r~------~ea~~~L 181 (1163)
T COG1196 112 YYINGEKVRLK---DIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRK-LIEEAAGVSKYKERK------EEAERKL 181 (1163)
T ss_pred EEECCcEeeHH---HHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHH-HHHHHhchHHHHHHH------HHHHHHH
Confidence 67777777766 33333432 24444444444444444 666666654432211 1122222
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh
Q 015660 287 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN 329 (403)
Q Consensus 287 ~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~ 329 (403)
..+..-|......+.=|+++|+.+...++.+..+++++.++..
T Consensus 182 ~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~ 224 (1163)
T COG1196 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555677888888888888777888887777544
No 38
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.79 E-value=90 Score=34.71 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=33.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH---HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 322 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT---KARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 322 ~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~---k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
.++.++...+..++.+..|+++..+|+...+++.++++.+|+-- -+-..++-.++.+|.+.|..++++.+.
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555554444321 112223334444555555555555444
No 39
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.08 E-value=64 Score=30.65 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHhcCcchhhhhhHHHHHH
Q 015660 293 VESAQIDVDWLRNILNEIS 311 (403)
Q Consensus 293 L~~agfKvdWL~~KLeEV~ 311 (403)
+.....++.+|+.+++++.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~ 83 (302)
T PF10186_consen 65 IEELRERLERLRERIERLR 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.81 E-value=55 Score=29.77 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kS 388 (403)
.+...+...+...+++...++++.+.+.++...+..+.++......+.+.+.+.++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555566667777777777776666666666655544
No 41
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.66 E-value=84 Score=32.04 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
.+.....+++.+..+|.+++.++.+...+|.+.+++..++..+-..+++
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555544444433
No 42
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.42 E-value=44 Score=32.77 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 015660 305 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 380 (403)
Q Consensus 305 ~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~ 380 (403)
+--++...+++....+..++++.+......+.++.|+++.-.+|...++++...+.+.++....-.+|-++.++|-
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3333444444444443434444444444555566667776666766666666666666666666666666666653
No 43
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.93 E-value=45 Score=33.23 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.+...++++++.+++++.++.++.-|+.+..++..+|
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444455555555555555555554444444444
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.60 E-value=34 Score=40.32 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=16.9
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 351 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 351 kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
+..+..++++.+.++.+++...+.+...|.+.+.+..
T Consensus 420 L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 420 LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555545444445544444443
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.32 E-value=1.3e+02 Score=35.52 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=2.9
Q ss_pred hhhHHHHH
Q 015660 303 LRNILNEI 310 (403)
Q Consensus 303 L~~KLeEV 310 (403)
+...++++
T Consensus 791 ~~~~~~~~ 798 (1163)
T COG1196 791 LQEELEEL 798 (1163)
T ss_pred HHHHHHHH
Confidence 33333333
No 46
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.79 E-value=26 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~k 396 (403)
..+++++..+++++|.+||.+...++..+..+-.++=++...
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 334556667777777777777777777666666666555433
No 47
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.62 E-value=72 Score=34.96 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 015660 283 VKEMMAVLKDVESAQIDVDWLRNILNEI 310 (403)
Q Consensus 283 L~ea~~~L~dL~~agfKvdWL~~KLeEV 310 (403)
|.+|...|..|.- ++=|+.-|+.+
T Consensus 171 l~~Ai~~LlGl~~----~~~L~~dl~~~ 194 (650)
T TIGR03185 171 LKEAIEVLLGLDL----IDRLAGDLTNV 194 (650)
T ss_pred HHHHHHHHhCcHH----HHHHHHHHHHH
Confidence 5555555555543 44444444443
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.20 E-value=71 Score=29.26 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 015660 300 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKE 360 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~ 360 (403)
|.=|+.-|+.+.+..+. +.-.-++..+.++.++.+|+.+..+|.+.+.+...++.
T Consensus 26 v~~LEreLe~~q~~~e~------~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 26 VESLERELEMSQENKEC------LILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444444432 22223444455666666666666666665555554433
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=73.61 E-value=98 Score=34.81 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=3.7
Q ss_pred hhhhhhHHH
Q 015660 300 VDWLRNILN 308 (403)
Q Consensus 300 vdWL~~KLe 308 (403)
+.+|+..+.
T Consensus 826 ~~~l~~~~~ 834 (1179)
T TIGR02168 826 LESLERRIA 834 (1179)
T ss_pred HHHHHHHHH
Confidence 344444433
No 50
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=73.57 E-value=61 Score=36.28 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred HHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 015660 285 EMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC---VNLLESTKKELESQMNELALKEKEVAGLKES 361 (403)
Q Consensus 285 ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~---d~~~e~~~~ELEe~leeL~~kekev~d~~~r 361 (403)
+..-++.+|+.|+=++-.|+...+.+.+.-........+..- +.+ ...+..+..++.....++.+.+....+ -
T Consensus 236 ev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~-~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~---e 311 (629)
T KOG0963|consen 236 EVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI-DDIDALGSVLNQKDSEIAQLSNDIERLEASLVE---E 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 444567777777777777777766665544332222222200 111 123333444444445555555555444 4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
++.++..+..||.+.......+.-++-|+..|
T Consensus 312 ~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 312 REKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777777777777777777777777776665
No 51
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.47 E-value=80 Score=31.41 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 363 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
.+...++.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 3444556666666666666666777777777777777775
No 52
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.79 E-value=52 Score=33.29 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 336 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 336 ~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
....+|.+.-++++.....+.+++.|+.+++.+-.+|..-..-+...|..+.
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444455555555555555555554444444444333
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.37 E-value=1.5e+02 Score=32.19 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhc-chhhhccHHHHHHHHHHHhHHHhcCcchhhh--hhHHHHHHHHH
Q 015660 258 YYLECLCSVVQELQS-TSLMQMTKAKVKEMMAVLKDVESAQIDVDWL--RNILNEISEAI 314 (403)
Q Consensus 258 ~ym~~Ll~LIetL~~-spl~eLS~~dL~ea~~~L~dL~~agfKvdWL--~~KLeEV~Ear 314 (403)
.+|+-|=.|+.+|+. .| +.|.+......+|+..||.++=+ .+.+..+.+..
T Consensus 212 ~~~~~iP~l~~~~~~~~P------~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 212 QIMEEIPELLKELQTELP------DQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Confidence 345555555555554 33 66777778888888899888864 66666665544
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.36 E-value=27 Score=37.26 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
++.+.++|...-+++++.++++++.+..+..+...|.+.++...++++.|.++-
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 333333333333344444444444444444444444444444444444444333
No 55
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.27 E-value=33 Score=36.91 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=55.2
Q ss_pred eEeccEEeeccch-HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH----
Q 015660 219 VSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV---- 293 (403)
Q Consensus 219 v~VnGfqVl~Sqv-~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL---- 293 (403)
..|||-.|..+.+ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+.+. +.+ -.++.++...|..+
T Consensus 109 ~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~~ 184 (563)
T TIGR00634 109 AYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQKE 184 (563)
T ss_pred EEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhhh
Confidence 7899999966654 333334555888864 44557777878888777743322222 222 44555555555554
Q ss_pred HhcCcchhhhhhHHHHHHHHH
Q 015660 294 ESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 294 ~~agfKvdWL~~KLeEV~Ear 314 (403)
+...=+++||+..|+||..+.
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 334456778888877776443
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.82 E-value=73 Score=31.06 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=24.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 322 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 322 ~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
.++.+.++....++..+.+++.........+.++..++..+.+.......|+..
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 344444444445555555555554444444444444444443333333333333
No 57
>PRK14160 heat shock protein GrpE; Provisional
Probab=71.72 E-value=18 Score=35.11 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+...+.++..+++++.++++++-++..+.....+++.-=+....+|....|+-+||
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666678888899999999999888888888888888888877777665
No 58
>PRK14161 heat shock protein GrpE; Provisional
Probab=71.66 E-value=7.7 Score=36.51 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 350 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 350 ~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
..+.+++++++++.++++++.++..+..++.++..-=+....+|...+|+..||
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LL 76 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELL 76 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555667777778888888888888777777777777777777776665
No 59
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.63 E-value=27 Score=40.96 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=26.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 015660 300 VDWLRNILNEISEAIEFSTQHQTIDAAKANC 330 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~~~~e~~K~~~ 330 (403)
|.+|+.||-++-+.++=+.+|+.++..+...
T Consensus 193 l~yieerLreLEeEKeeL~~Yqkldk~rr~l 223 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEELEKYQKLDKERRSL 223 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhh
Confidence 5678889999999999899999999887664
No 60
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.63 E-value=53 Score=29.63 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 304 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 304 ~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
-+.|+.|.++..-. |.-.-.++..+..+|+++.+=-.+-.++|.+++.-+..+..-+..++.....|+-.|
T Consensus 49 ~kql~~vs~~l~~t---------KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 49 SKQLEQVSESLSST---------KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677776666321 222224555566666666666666666677777777777777777777777776666
Q ss_pred HHhhhh
Q 015660 384 QATQSK 389 (403)
Q Consensus 384 ~~~kSK 389 (403)
..+..|
T Consensus 120 ~~ie~~ 125 (126)
T PF07889_consen 120 DEIEEK 125 (126)
T ss_pred HHHhcC
Confidence 655543
No 61
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=71.39 E-value=55 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
.+...+.+.+..|+.....+...+.++..-+..
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355666777777777777777777777666654
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.28 E-value=1.5e+02 Score=35.48 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH-HhcCcchhhhhhHHHHHHHH
Q 015660 235 QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV-ESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 235 ~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL-~~agfKvdWL~~KLeEV~Ea 313 (403)
+-||-.-||| .+-+..+.-|.-+++=|+++- .+..|+..+..+ +..+-+|.|++..|.-+...
T Consensus 152 ~vi~~~Qge~--~~~~~~~~~rk~~~d~if~~~--------------~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 215 (1311)
T TIGR00606 152 NVIFCHQEDS--NWPLSEGKALKQKFDEIFSAT--------------RYIKALETLRQVRQTQGQKVQEHQMELKYLKQY 215 (1311)
T ss_pred hceeeCCccc--ccccCChHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445557776 355667777777777666543 222333333332 33455667777777666654
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 015660 314 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 314 re~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kS 388 (403)
++.++....--.+............+.++.++.++.....++......+..+..+|..|+.....+...+..++.
T Consensus 216 ~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~ 290 (1311)
T TIGR00606 216 KEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELEL 290 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322221111111111122222223333334444433333333444444444444444444444444444443
No 63
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.07 E-value=1.1e+02 Score=36.33 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh-----hHHHHHHHHHHhh
Q 015660 254 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR-----NILNEISEAIEFS 317 (403)
Q Consensus 254 ~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~-----~KLeEV~Eare~~ 317 (403)
...+.+++.|-..|+.|-+.- +.+.+-...+..++-.+-+.-|++ .+++++.++++.+
T Consensus 198 ~~~~~~l~~L~~~~~~l~kdV------E~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 198 TTKTEKLNRLEDEIDKLEKDV------ERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 344556666666666654443 344555555666666655555553 3455555555443
No 64
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.97 E-value=98 Score=29.44 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 015660 282 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA 326 (403)
Q Consensus 282 dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~ 326 (403)
+|.++-..|..+.... -=|+.++++.......+...+.+=..
T Consensus 39 ~l~~ar~~lA~~~a~~---k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 39 TLVEVRTTSARTIADK---KELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544222 34566666666555444444443333
No 65
>PRK10869 recombination and repair protein; Provisional
Probab=70.66 E-value=94 Score=33.77 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=12.5
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 015660 300 VDWLRNILNEISEAIEFST 318 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~ 318 (403)
|+.++.||..+...++.+.
T Consensus 298 l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 298 LAELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4777777777776655444
No 66
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.51 E-value=1e+02 Score=29.39 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHH
Q 015660 253 NSMRAYYLECLCS 265 (403)
Q Consensus 253 ~~lRs~ym~~Ll~ 265 (403)
..++.||=++..+
T Consensus 12 ~~iK~YYndIT~~ 24 (201)
T PF13851_consen 12 QEIKNYYNDITLN 24 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 4678888777644
No 67
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=70.39 E-value=21 Score=35.19 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=22.9
Q ss_pred EeeccchHHHHHHHhhccccccc----CcccchhHHHHHHHHH
Q 015660 225 HVRASISSILQSIISRYGDIAAN----CNLESNSMRAYYLECL 263 (403)
Q Consensus 225 qVl~Sqv~~v~~IFeKHpDIAsn----f~lKs~~lRs~ym~~L 263 (403)
.|.+.....|..||-+-||.... +++.+..+.+.+...-
T Consensus 45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~~~~~l~~~~ 87 (331)
T PRK03598 45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQAK 87 (331)
T ss_pred EeecccCcEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHH
Confidence 45555555666777777766543 5666766665544333
No 68
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.88 E-value=81 Score=33.43 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=9.5
Q ss_pred CCCcccccccccceeEec
Q 015660 205 DSDDEEAQSVISDSVSVG 222 (403)
Q Consensus 205 ~~d~eE~~Sv~~etv~Vn 222 (403)
++|+.|..|+.+++++-|
T Consensus 174 S~d~SecSS~tS~S~~~~ 191 (395)
T PF10267_consen 174 SEDSSECSSVTSGSIDAN 191 (395)
T ss_pred cccccccccCCCCCCCCC
Confidence 334445666666555444
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.85 E-value=1.2e+02 Score=36.81 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=61.6
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHH
Q 015660 277 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC---VNLLESTKKELESQMNELALKEK 353 (403)
Q Consensus 277 eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~---d~~~e~~~~ELEe~leeL~~kek 353 (403)
.-|..|+..|.+.+.+-+.|.=+-+=++...++|.|+-+..++.+. .+++.+ ++.++...+-|.+-.+++.-.|+
T Consensus 1535 ~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~--~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~ 1612 (1758)
T KOG0994|consen 1535 SRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQG--EAQDAIQGADRDIRLAQQLLAKVQEETAAAEK 1612 (1758)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899999999999998888888899999988876654433 222222 23333344444444455555555
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhh
Q 015660 354 EVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~es 376 (403)
.+..+.+|+.++..++..|..+.
T Consensus 1613 ~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1613 LATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666655555443
No 70
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=69.82 E-value=55 Score=39.43 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhHH
Q 015660 303 LRNILNEISEAIEFSTQHQTID 324 (403)
Q Consensus 303 L~~KLeEV~Eare~~~~~~~~e 324 (403)
|++|+++|-++-+|.+.-..++
T Consensus 170 LKkkfD~IF~~tky~KAld~~k 191 (1294)
T KOG0962|consen 170 LKKKFDDIFSATKYTKALDSLK 191 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555444433
No 71
>PRK14140 heat shock protein GrpE; Provisional
Probab=69.21 E-value=9.4 Score=36.44 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++|.+.+.++.++++++.++++++.++..+..++.++...=+....+|...+|+..||
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777778888889999888888888888877778888888777776664
No 72
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=69.15 E-value=33 Score=33.44 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=50.3
Q ss_pred cchHHHHHHHhhcccccc-cCc-ccchhH------------------------HHHHHHHHHHHHHHHhcchhhhccHHH
Q 015660 229 SISSILQSIISRYGDIAA-NCN-LESNSM------------------------RAYYLECLCSVVQELQSTSLMQMTKAK 282 (403)
Q Consensus 229 Sqv~~v~~IFeKHpDIAs-nf~-lKs~~l------------------------Rs~ym~~Ll~LIetL~~spl~eLS~~d 282 (403)
.-++.|+++++-|||+-- .|. .-.|.+ --+|+.-|+++|=+|...-+..|.+.+
T Consensus 57 ~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~ 136 (204)
T COG2178 57 EAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGS 136 (204)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346778888888888754 222 212222 236999999999999999999999999
Q ss_pred HHHHHHHHhHHHh
Q 015660 283 VKEMMAVLKDVES 295 (403)
Q Consensus 283 L~ea~~~L~dL~~ 295 (403)
+.+|...+..|++
T Consensus 137 ~~~Ae~~~~~ME~ 149 (204)
T COG2178 137 FEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888874
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.09 E-value=44 Score=38.62 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 015660 333 LLESTKKELESQ 344 (403)
Q Consensus 333 ~~e~~~~ELEe~ 344 (403)
++|++++|||.+
T Consensus 397 ~rEaar~ElEkq 408 (1118)
T KOG1029|consen 397 RREAAREELEKQ 408 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 456666666665
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.85 E-value=1.8e+02 Score=34.77 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHH
Q 015660 300 VDWLRNILNEISEAIEFSTQHQTIDA 325 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~~~~e~ 325 (403)
+.-|++++.+..+..+.+.+.+++.+
T Consensus 237 i~~l~k~i~e~~e~~~~~~~~e~~~~ 262 (1074)
T KOG0250|consen 237 IKNLKKKIKEEEEKLDNLEQLEDLKE 262 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766665444444433
No 75
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=68.71 E-value=7.6 Score=40.03 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~k 396 (403)
.|.++.+||.++.+|+.+++.....+.+.+..+..|++.+.+.
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555555555666666655443
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.71 E-value=28 Score=35.16 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 015660 365 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398 (403)
Q Consensus 365 ~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl 398 (403)
..-.|.+++.+...+...+..+...+++...-.+
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444555555566666666666666666544433
No 77
>PHA03158 hypothetical protein; Provisional
Probab=68.13 E-value=49 Score=32.55 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=43.8
Q ss_pred eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 274 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~sp 274 (403)
|.||||+|+..-.++..||-.--| -.+++++.=+...+.-||.--..-|++.
T Consensus 202 V~vnG~~V~y~sLpf~ERl~Rs~p----PWCv~t~~EK~~~~kQllka~kkc~~~s 253 (273)
T PHA03158 202 VNINGKHVRFDDLPFMERIKRSGP----PWCIKTAKEKAAILKQLLKAAKKCCKNS 253 (273)
T ss_pred EEecCEEEEeccCcHHHHHhccCC----CcEeecHHHhHHHHHHHHHHHHHHhcch
Confidence 899999999999999999876655 3678888888888888888777777776
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.06 E-value=1e+02 Score=34.90 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=12.9
Q ss_pred HHhcCcchhhhhhHHHHHHHHHH
Q 015660 293 VESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 293 L~~agfKvdWL~~KLeEV~Eare 315 (403)
|....-+-|=|+.||-++.-+|+
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445666666666666654
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.81 E-value=60 Score=38.87 Aligned_cols=53 Identities=26% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
++..|+...+.+.++.-++.+++..+..|+..+.+++.+...+.++...+++.
T Consensus 526 lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 526 LKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344444444555555566666666666666666666655555555544433
No 80
>PRK14143 heat shock protein GrpE; Provisional
Probab=67.40 E-value=11 Score=37.04 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=27.0
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
.++.++.+++.++-++..+..++.++..-=+....+|...+|+-.||
T Consensus 78 ~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lL 124 (238)
T PRK14143 78 SLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEIL 124 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666655556666666666655554
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.39 E-value=66 Score=35.25 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
|...++++.+++..+..+..++.+++.....+
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444333333333
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.39 E-value=56 Score=32.39 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=47.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 015660 299 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 372 (403)
Q Consensus 299 KvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~L 372 (403)
..+=|+.+.+++.++ ...++.+++...+.+..+..+++..-...++.+.+++++++|+......|+..
T Consensus 18 e~~rl~~~~~~~~~~------l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v 85 (239)
T COG1579 18 EKDRLEPRIKEIRKA------LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85 (239)
T ss_pred HHHHHHHhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555533333 34556667777778888888888888888888888888888887777666443
No 83
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.72 E-value=59 Score=26.36 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ 374 (403)
+++++.....|=++....+..++.||++|=.||..||.
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33444444455566666677788899999999988874
No 84
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.53 E-value=1.6e+02 Score=32.05 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=7.5
Q ss_pred eeccchHHHHHHHh
Q 015660 226 VRASISSILQSIIS 239 (403)
Q Consensus 226 Vl~Sqv~~v~~IFe 239 (403)
.+-||+++=+..++
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 55555555555444
No 85
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.63 E-value=83 Score=26.61 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
|...-..|+..++.|.++..+++..-.+|.++.+++..||.-...|..-...+.+|+++
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444456666667777777777777777777777888888777787777777777764
No 86
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.58 E-value=1.2e+02 Score=34.62 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=48.2
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhhhhH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHhHHHHHHH
Q 015660 295 SAQIDVDWLRNILNEISEAIEFSTQHQTI---DAAKANCVNLLESTKKELESQMNELALKE---KEVAGLKESVAKTKAR 368 (403)
Q Consensus 295 ~agfKvdWL~~KLeEV~Eare~~~~~~~~---e~~K~~~d~~~e~~~~ELEe~leeL~~ke---kev~d~~~rv~e~k~R 368 (403)
..-+..+||+.+++.+....+-+.....- ...+... ..++...+++...++++.... .++.++++++.+.+.+
T Consensus 523 ~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~-~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~ 601 (908)
T COG0419 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEEL-RQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKK 601 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455689999888887666433222110 0111111 133344555555566666666 5566666666666666
Q ss_pred HHHHHHhhhhHHHHHHHh
Q 015660 369 LSDLELESNRLEQIIQAT 386 (403)
Q Consensus 369 L~~LE~ess~l~~~~~~~ 386 (403)
+.+++...+.+...+...
T Consensus 602 ~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 602 LKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666555555554444333
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.57 E-value=66 Score=30.99 Aligned_cols=8 Identities=13% Similarity=0.381 Sum_probs=4.6
Q ss_pred hhhhhhHH
Q 015660 300 VDWLRNIL 307 (403)
Q Consensus 300 vdWL~~KL 307 (403)
.+|+..+.
T Consensus 77 ~GWV~~~~ 84 (206)
T PRK10884 77 TAWIPLKQ 84 (206)
T ss_pred EEeEEHHH
Confidence 46666554
No 88
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.52 E-value=72 Score=33.48 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 397 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kS 397 (403)
..++++++.+++++|.+||.....++..+..+-.++=++...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4455566777777777777777777776666666666654433
No 89
>PRK09039 hypothetical protein; Validated
Probab=64.27 E-value=89 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ 374 (403)
.+..+.++|+..-..|+..+.++.+.+++..+...+|..|+.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444555555555554555555555444443
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.88 E-value=1.3e+02 Score=29.53 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=9.7
Q ss_pred chhhhhhHHHHHHHHHHh
Q 015660 299 DVDWLRNILNEISEAIEF 316 (403)
Q Consensus 299 KvdWL~~KLeEV~Eare~ 316 (403)
|++=|++...+|....+.
T Consensus 9 K~~~lek~k~~i~~e~~~ 26 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVES 26 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555655555543
No 91
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.78 E-value=86 Score=33.24 Aligned_cols=108 Identities=15% Similarity=0.321 Sum_probs=61.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH--HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA--IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKE- 352 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ea--re~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~ke- 352 (403)
.......|..+...|.++++.. .=|+..++.+..- +++--..+.+.+++-++++ ||+++.++-+.-
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~---~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er--------LEeqlNd~~elHq 275 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQ---SRLEESIEKLKEQYQREYQFILEALQEERYRYER--------LEEQLNDLTELHQ 275 (395)
T ss_pred cccccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHH
Confidence 4445556667777777777665 4566666666642 2333344566666665553 444444444433
Q ss_pred HHHhhhHHhHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhhcc
Q 015660 353 KEVAGLKESVAKTKARLSDL-ELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 353 kev~d~~~rv~e~k~RL~~L-E~ess~l~~~~~~~kSKV~kf~ 394 (403)
-||..++..+..|.+|+.=. .+..-+|...|...+.+|.|.+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34666666666666666533 3444455666666666666654
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.62 E-value=37 Score=32.73 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 344 QMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 344 ~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
.++++-..|.++.+.+.+|+.+++++..|+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777888888888777654
No 93
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.60 E-value=1e+02 Score=31.98 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=8.6
Q ss_pred cccccCcccchhH
Q 015660 243 DIAANCNLESNSM 255 (403)
Q Consensus 243 DIAsnf~lKs~~l 255 (403)
|++++.+...|.-
T Consensus 241 D~vAd~ra~TPta 253 (438)
T PRK00286 241 DFVADLRAPTPTA 253 (438)
T ss_pred HHhhhccCCChHH
Confidence 6677777776643
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.48 E-value=2.6e+02 Score=33.51 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=10.0
Q ss_pred HHHHhHHHhcCcchhhhhhHHH
Q 015660 287 MAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 287 ~~~L~dL~~agfKvdWL~~KLe 308 (403)
.....++.++.-.|+.|+..+.
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~ 816 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQ 816 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444555444443
No 95
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.85 E-value=1.4e+02 Score=28.37 Aligned_cols=18 Identities=50% Similarity=0.445 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELAL 350 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~ 350 (403)
..++...+||.++.+|.+
T Consensus 128 ~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 128 ELESEIKELEMKILELQR 145 (190)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 96
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.69 E-value=49 Score=38.99 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.+|..+..+++++..-+.+.++|+.++..+.+.+.+..
T Consensus 425 ~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~ 462 (1200)
T KOG0964|consen 425 SELKEKLEEIKELESSINETKGRMEEFDAENTELKREL 462 (1200)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555544444444433
No 97
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.40 E-value=1.5e+02 Score=29.01 Aligned_cols=17 Identities=6% Similarity=0.215 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHHhcC
Q 015660 281 AKVKEMMAVLKDVESAQ 297 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ag 297 (403)
+.|..=+..+..|+...
T Consensus 11 dRla~YIekVr~LE~~N 27 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQEN 27 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444445555554444
No 98
>PRK14139 heat shock protein GrpE; Provisional
Probab=62.22 E-value=17 Score=34.56 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+++.++++++-++..+..+..+++.-=+....+|...+|+.+||
T Consensus 46 ~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LL 89 (185)
T PRK14139 46 AKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLL 89 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555554443
No 99
>PLN02320 seryl-tRNA synthetase
Probab=61.90 E-value=93 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=23.1
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 397 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kS 397 (403)
+++++..+++++|..||.+...++..+..+=..+=++...+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~ 174 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPD 174 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 44445566666666666666666555555555555544333
No 100
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.89 E-value=43 Score=39.28 Aligned_cols=50 Identities=28% Similarity=0.357 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 385 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~ 385 (403)
.++-..+++|++...|..||+|..+ -+......|.+||-+-..|.+++..
T Consensus 1002 ~v~~~~ek~ee~~a~lr~Ke~efee---tmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1002 RVEKVQEKLEETQALLRKKEKEFEE---TMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4555555666666666666665554 4555566666666666666665543
No 101
>PRK14158 heat shock protein GrpE; Provisional
Probab=61.42 E-value=18 Score=34.57 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++.+.++++.++++++-++..+..++.+++.-=+....+|...+|+-+||
T Consensus 48 ~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lL 97 (194)
T PRK14158 48 ALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEIL 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777777777766777777776666665554
No 102
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=61.31 E-value=28 Score=29.32 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=15.0
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 350 LKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 350 ~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
....++...++++.++.+||..||...
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666665433
No 103
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.20 E-value=1.6e+02 Score=28.48 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=7.2
Q ss_pred hhccHHHHHHHHH
Q 015660 276 MQMTKAKVKEMMA 288 (403)
Q Consensus 276 ~eLS~~dL~ea~~ 288 (403)
..++..+|..+..
T Consensus 118 ~~~~~~~l~~~l~ 130 (264)
T PF06008_consen 118 DQLPSEDLQRALA 130 (264)
T ss_pred CCCCHHHHHHHHH
Confidence 3566666655543
No 104
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=61.11 E-value=2.1e+02 Score=29.70 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-hhhHHHHHH
Q 015660 233 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEIS 311 (403)
Q Consensus 233 ~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW-L~~KLeEV~ 311 (403)
.|...=...=.-|.+-+..|..||...-.+|-..+..|..-- ...+ .-...-+.++..|.-+|.| |.+-+.||.
T Consensus 201 ~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~----~~vn-~al~~Ri~et~~ak~~Le~ql~~~~~ei~ 275 (384)
T PF03148_consen 201 SWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA----DAVN-AALRKRIHETQEAKNELEWQLKKTLQEIA 275 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444455777888899999999888888888886433 1111 1223445666677777777 556667776
Q ss_pred HHHHhhhhhhhHHHHHHhh
Q 015660 312 EAIEFSTQHQTIDAAKANC 330 (403)
Q Consensus 312 Eare~~~~~~~~e~~K~~~ 330 (403)
...+.+..-..+-..|..-
T Consensus 276 ~~e~~i~~L~~ai~~k~~~ 294 (384)
T PF03148_consen 276 EMEKNIEDLEKAIRDKEGP 294 (384)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6665555555544444443
No 105
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=61.05 E-value=2.3e+02 Score=31.28 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 015660 253 NSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVN 332 (403)
Q Consensus 253 ~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~ 332 (403)
+-++++|+.=|-.|+..|+... +....+.. .-.=|.+||+..... |+..+.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad-------------SKa~~f~~---Ec~aL~~rL~~aE~e-------------k~~l~e 462 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD-------------SKAVHFYA---ECRALQKRLESAEKE-------------KESLEE 462 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHH
Confidence 4589999999988888776554 11111110 123344555543222 232322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
.++.+.+.+....+||.--+.-- ..++..|.++|..|-+..++-...|..+|
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRNY---EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333222332222222 34788888888888888888777777666
No 106
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.98 E-value=1.7e+02 Score=29.59 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHH
Q 015660 340 ELESQMNELALKEKEVAGLKESVAK 364 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e 364 (403)
++.+.-.++.+.+++|++++++|.+
T Consensus 74 ~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 74 EIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555443
No 107
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.76 E-value=1.8e+02 Score=32.55 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+++.|..|..+...++.++......+...+.+++++..+ .+..+..|+..|
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~---~f~~le~~~~~~ 383 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED---FFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHH
Confidence 455556666666666666666666666666666655444 333444444444
No 108
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=60.45 E-value=63 Score=35.66 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=68.6
Q ss_pred hhhccHHHHHHHHHHHhHH--HhcCcchh--hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 015660 275 LMQMTKAKVKEMMAVLKDV--ESAQIDVD--WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELAL 350 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL--~~agfKvd--WL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~ 350 (403)
+..+.+.+|..+-..|.+. +.++|.++ =|+ +|+.+++..+. ...+.......++...+.-|.+
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~---~e~~elr~~~~----------~~~k~~~~~re~~~~~~~~l~~ 152 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLR---EELKELRKKLE----------KAEKERRGAREKLDDYLSRLSE 152 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHH----------HHHHHHhhhHHHHHHHhhhhhh
Confidence 5777788888888888777 44444333 122 23333332111 0011233344455556677888
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 351 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 351 kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
++.+++-++.++..|.+.+.+|..+..+|-.-|..++.=+++
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888889999999999999999999998888888765443
No 109
>PRK14155 heat shock protein GrpE; Provisional
Probab=60.36 E-value=13 Score=35.95 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++++.++++++-++..+..++.++..-=+....+|...+|+.+||
T Consensus 26 e~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 26 KAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666666666666666666666666665554
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.20 E-value=1.7e+02 Score=28.26 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..++.+.++++..-....+.++.+++.+.++.++..++.+++.-...|.-.+..+-..++.|
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555555555555555555544444444444444
No 111
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.06 E-value=1.1e+02 Score=34.69 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHhhhh
Q 015660 300 VDWLRNILNEISEAIEFSTQ 319 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~ 319 (403)
+.=||+||.|-..+|..+.+
T Consensus 490 l~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35577888877777755543
No 112
>PRK11519 tyrosine kinase; Provisional
Probab=59.69 E-value=90 Score=34.77 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=30.2
Q ss_pred ccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 244 IAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 244 IAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
|...|.-.+|..=...+|.|...-- ++..+.....+..+ ++||+++|.++...-
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~~Yi-------~~~~~~k~~~a~~a----------~~fL~~ql~~l~~~L 283 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITRNYL-------EQNIERKSEEASKS----------LAFLAQQLPEVRSRL 283 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 5556777788877777777754321 11122222233333 478888887776443
No 113
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=59.53 E-value=1.5e+02 Score=31.18 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=21.5
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHH
Q 015660 293 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 335 (403)
Q Consensus 293 L~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e 335 (403)
|....-+|++|+.+|.-......+-.+.+.++.-..+..+.+.
T Consensus 279 L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a~~ 321 (432)
T TIGR00237 279 LHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALN 321 (432)
T ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777775444444333344444444444333333
No 114
>PRK14127 cell division protein GpsB; Provisional
Probab=59.10 E-value=82 Score=27.81 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 372 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~L 372 (403)
+...-+.++....++...+.++..+++++.++..|+..+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333444444444444444444444555555544443
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.89 E-value=1.4e+02 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
+...+.-+...|+..+..+++.+.-+..|.
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444455555555555554444443
No 116
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=58.70 E-value=87 Score=32.03 Aligned_cols=98 Identities=14% Similarity=0.256 Sum_probs=48.7
Q ss_pred HHHHHHHHhHHHhcCc--chhhhhhHHHHHHHH--HHhhhhhhhHHHHHHhhHHHHHHHH--------HHHHHHH-HHHH
Q 015660 283 VKEMMAVLKDVESAQI--DVDWLRNILNEISEA--IEFSTQHQTIDAAKANCVNLLESTK--------KELESQM-NELA 349 (403)
Q Consensus 283 L~ea~~~L~dL~~agf--KvdWL~~KLeEV~Ea--re~~~~~~~~e~~K~~~d~~~e~~~--------~ELEe~l-eeL~ 349 (403)
+...+....+|++.-| ||.=|+.+|++|... -+|++....|++..+..-+..+.-+ .+-+.++ .--.
T Consensus 25 ~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~ 104 (291)
T KOG4466|consen 25 MSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKK 104 (291)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445554444 466778888888754 3777777777776443221111111 1111111 1111
Q ss_pred HHHHHHhhhHHhH-HHHHHHHHHHHHhhhhHH
Q 015660 350 LKEKEVAGLKESV-AKTKARLSDLELESNRLE 380 (403)
Q Consensus 350 ~kekev~d~~~rv-~e~k~RL~~LE~ess~l~ 380 (403)
+-|.++..+++.+ .++.+|...||.++.-++
T Consensus 105 e~E~~~~lLke~l~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 105 EYESKKKLLKENLISELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2223344444444 667777777776665543
No 117
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.40 E-value=2.9e+02 Score=32.64 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=11.4
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 352 EKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~e 375 (403)
...+++..++|.+.+.|+-+|++-
T Consensus 385 ~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 385 LELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhc
Confidence 333444444555555555554443
No 118
>PRK14151 heat shock protein GrpE; Provisional
Probab=58.14 E-value=18 Score=33.92 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
+.++++++-++..+..++.++..-=+....+|...+|+.+|
T Consensus 36 ~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~L 76 (176)
T PRK14151 36 LAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDL 76 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 119
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.06 E-value=1.9e+02 Score=36.31 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcchh--hhcc---------HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH-HHhh
Q 015660 250 LESNSMRAYYLECLCSVVQELQSTSL--MQMT---------KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA-IEFS 317 (403)
Q Consensus 250 lKs~~lRs~ym~~Ll~LIetL~~spl--~eLS---------~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ea-re~~ 317 (403)
..+-.+++-| ..++..|+.|+.+.- +..+ .+++......|.-|.+-++= ||.=++-..+. .++.
T Consensus 1174 ~e~~~L~qq~-~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~---LRee~~~~~~k~qEl~ 1249 (1822)
T KOG4674|consen 1174 RENARLKQQV-ASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV---LREENEANLEKIQELR 1249 (1822)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH
Confidence 3455555544 455666666653320 1111 23445555566656566532 23222222221 2444
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 015660 318 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 368 (403)
Q Consensus 318 ~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~R 368 (403)
++...+.......+..+.+++.+|.....+|...+.++..|+.|..++...
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777888888888888888888888888888887776444
No 120
>PRK14162 heat shock protein GrpE; Provisional
Probab=57.95 E-value=23 Score=33.95 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=32.5
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++..++.++.++++++-++..+..++.++..-=+....+|...+|+.+||
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 96 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVL 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666677777777777777777766666777776666666654
No 121
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.88 E-value=1.3e+02 Score=27.14 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
.+.++++.+|++-+.-|+..|+..-.++...+..+++++.+-.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677778888888888888888888888888888876543
No 122
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.61 E-value=67 Score=26.06 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.|+..++.|-+...+... .=...++++..+..++..|-.....+++||+..
T Consensus 4 ~Le~kle~Li~~~~~L~~---EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKS---ENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444 335566777777788888888888888888754
No 123
>PRK14153 heat shock protein GrpE; Provisional
Probab=57.49 E-value=19 Score=34.57 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
..++.++++++.++++++.++..+..++.++..-=+....+|....|+.+||
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LL 90 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLL 90 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666777777777777777777766666667776666666554
No 124
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=56.58 E-value=1.2e+02 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=14.9
Q ss_pred chHHHHHHHhhc-ccccccCcccchhHHH
Q 015660 230 ISSILQSIISRY-GDIAANCNLESNSMRA 257 (403)
Q Consensus 230 qv~~v~~IFeKH-pDIAsnf~lKs~~lRs 257 (403)
.+.+++.-|.++ +-|..-|-..-..+|+
T Consensus 71 di~~lr~~~~~~ts~ik~~ye~El~~ar~ 99 (546)
T KOG0977|consen 71 DINLLRGVVGRETSGIKAKYEAELATARK 99 (546)
T ss_pred HHHHHHhhccCCCcchhHHhhhhHHHHHH
Confidence 455566666666 5555555444444443
No 125
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.45 E-value=78 Score=34.86 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=57.3
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 315 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 315 e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
++.+...+-++++++.+..+...+.+|-+-.++++-..=.++.++..+.+--.|=.++|.+...++..+..++-=+
T Consensus 32 rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 32 RLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444566667788888888888888888878888888888888888886665666788888888888777766543
No 126
>PRK14163 heat shock protein GrpE; Provisional
Probab=56.10 E-value=23 Score=34.52 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=27.1
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 358 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 358 ~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+++++.+++++|-++..+..++.+++.-=+..+.+|-...|+-+||
T Consensus 52 l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 97 (214)
T PRK14163 52 VRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELL 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566666666666666666666666666665555555543
No 127
>PRK09039 hypothetical protein; Validated
Probab=55.96 E-value=2.5e+02 Score=28.88 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
+|.++.....+..-+|.-++.+|+++++.|..|+.....+++.....+.+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444445555555544444444443333333333
No 128
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.71 E-value=3.9e+02 Score=32.58 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=18.3
Q ss_pred eccEEeeccchHHHHHHHhhcccccccC
Q 015660 221 VGKYHVRASISSILQSIISRYGDIAANC 248 (403)
Q Consensus 221 VnGfqVl~Sqv~~v~~IFeKHpDIAsnf 248 (403)
.+-|.+...++..+..++.+..+.....
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr~~~~~l 818 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLRERIPEL 818 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567777788766777766666655443
No 129
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=55.46 E-value=2.9e+02 Score=29.60 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-----HHHHHHh
Q 015660 255 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-----IDAAKAN 329 (403)
Q Consensus 255 lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~-----~e~~K~~ 329 (403)
+-..|++=++.+++.|.+.. ..|+++-|.-+...|..++.-+-... ..+|.+..+..+.-+.... ++..+..
T Consensus 257 ~g~~l~~k~~~~~e~l~~~~-~~l~~e~l~~~~~~l~~l~~~~~~~~--~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~ 333 (429)
T PF10037_consen 257 WGLVLYGKALDAMELLASID-LKLCKEVLDLLQEVLEKLESESDEES--VKKLQEAVDKCEKSNSFEELLLEEVKQSKNK 333 (429)
T ss_pred HhHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHhcccccchhh--HHHHHHHHhhhhhccchHHHhHHHHHHhhhh
Confidence 33567777777888887776 66777777777777777665332111 2223332221111011111 1111111
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhhhhH
Q 015660 330 CVNLLE---STKKELESQMNELALKEKEVAG-----LKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 330 ~d~~~e---~~~~ELEe~leeL~~kekev~d-----~~~rv~e~k~RL~~LE~ess~l 379 (403)
.+..+. ..-++.++..+.+.+.+.+.-+ .++|++++..++.+++.+...+
T Consensus 334 ~E~~l~~q~~~f~~W~~~rq~~~~~q~~~l~~~~~~~~~rl~~ie~~~~~l~e~e~~l 391 (429)
T PF10037_consen 334 EEPLLPEQCERFQEWEEKRQSLLKEQSERLLTLTQLRKERLEEIEKEDKELYEQEQQL 391 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111221 2233556666666666666555 6778888888888888877665
No 130
>PLN02678 seryl-tRNA synthetase
Probab=55.25 E-value=1.4e+02 Score=32.03 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=22.7
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..++.+++.+++++|..||.+...++..+..+-..+=++
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344455556666666666666666666665555555444
No 131
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.24 E-value=1.8e+02 Score=32.47 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 340 ELESQMNELALKEKE-VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 340 ELEe~leeL~~keke-v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
++.+.+..+..+... -++|..+..+.+.++.++|..... ++|..+..|
T Consensus 150 ~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~------~lk~~l~~~ 198 (611)
T KOG2398|consen 150 EAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLS------FLKEELWLF 198 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 455555555555554 456677777777777777665443 355555444
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.07 E-value=1.7e+02 Score=26.83 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHhHHHHHHHHHHHHHhhhh-------HHHHHHHhhhhh
Q 015660 325 AAKANCVNLLESTKKELESQMNEL-------ALKEKEVAGLKESVAKTKARLSDLELESNR-------LEQIIQATQSKV 390 (403)
Q Consensus 325 ~~K~~~d~~~e~~~~ELEe~leeL-------~~kekev~d~~~rv~e~k~RL~~LE~ess~-------l~~~~~~~kSKV 390 (403)
-++++....++.+.++|+...+++ .-..+++..+++++..+...|.+|+.+... |.+-+...+.||
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777665443333 333444555566666666666666655443 344455556666
Q ss_pred hhc
Q 015660 391 TKF 393 (403)
Q Consensus 391 ~kf 393 (403)
.-+
T Consensus 97 ~eL 99 (140)
T PF10473_consen 97 SEL 99 (140)
T ss_pred HHH
Confidence 554
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=55.04 E-value=2.1e+02 Score=27.93 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcch----hhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 015660 255 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDV----DWLRNILNEISEAIEFSTQHQTIDAAKANC 330 (403)
Q Consensus 255 lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKv----dWL~~KLeEV~Eare~~~~~~~~e~~K~~~ 330 (403)
++++++-.+=.+|+.+-.+- .+-+--+.+|...|..++..=-++ -=|+.+|++...-.+.+...+.+=..+.+.
T Consensus 7 ~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E 84 (225)
T COG1842 7 LKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNE 84 (225)
T ss_pred HHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 34445555555566554433 555555666666666555432221 234555555554444333333332223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
+ +-+.+..+.......+...+.++....+.+..++..|.+|+.+...+
T Consensus 85 ~-LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 85 D-LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222222222233333334444444555555555555444444
No 134
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=54.97 E-value=43 Score=30.23 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 015660 307 LNEISEAI 314 (403)
Q Consensus 307 LeEV~Ear 314 (403)
+.||.+.+
T Consensus 5 ~kEi~~l~ 12 (121)
T PF03310_consen 5 IKEISELI 12 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 135
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.77 E-value=1.8e+02 Score=29.34 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 281 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
.||..+...-++|++.|-.|-=|=.+=.++.+.|
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R 150 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREER 150 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHH
Confidence 4555566666666666655533333323444444
No 136
>PRK12704 phosphodiesterase; Provisional
Probab=54.58 E-value=2.1e+02 Score=31.23 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=6.2
Q ss_pred hHHHHHHHhhhhhhhc
Q 015660 378 RLEQIIQATQSKVTKF 393 (403)
Q Consensus 378 ~l~~~~~~~kSKV~kf 393 (403)
++.+.......++++.
T Consensus 132 ~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 132 ELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444433
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.52 E-value=1.8e+02 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
.+..+..+|+++-+.+.....|+....-......+++..|+.+...|=++....
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555556666666666777777777887777775555433
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.51 E-value=1.9e+02 Score=27.09 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=9.9
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhh
Q 015660 355 VAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess 377 (403)
+..++..+.+++.+|.+++.+..
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 139
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=54.17 E-value=54 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
++++...|.+||....+....+..++++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 140
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.06 E-value=98 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
-|++.++||+.+++-|+-||..|.+-.
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 466677889999999999999998753
No 141
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.05 E-value=79 Score=32.47 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=10.9
Q ss_pred HHHHHHhhhhHHHHHHHhhh
Q 015660 369 LSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 369 L~~LE~ess~l~~~~~~~kS 388 (403)
|+++-.|...|.|.|.-+|+
T Consensus 119 LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555666655554
No 142
>PRK14144 heat shock protein GrpE; Provisional
Probab=54.03 E-value=16 Score=35.15 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=39.4
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 351 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 351 kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
.++++.++++++.++++++.++..+..++.+++.-=+....+|...+|+.+||
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 102 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALL 102 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556667777888888888888888888877778888887777776665
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.01 E-value=2e+02 Score=27.34 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHH
Q 015660 359 KESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
+.|+..+...|..|+.+..-|.+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~q 114 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQ 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 144
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=52.99 E-value=1.5e+02 Score=29.08 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHH------------HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 337 TKKELESQMNELALKEKE------------VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 337 ~~~ELEe~leeL~~keke------------v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
++-.||.+|+.|.-.+.+ +..+++++.+-.+|+=.||.+.++.++.- .-.|.+++|.
T Consensus 29 LR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a 97 (205)
T PF12240_consen 29 LRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334566666666444332 44467777888888888888888888766 4567777774
No 145
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=52.88 E-value=76 Score=33.60 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=48.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660 251 ESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305 (403)
Q Consensus 251 Ks~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~ 305 (403)
|.-.=+.+|-+.+...++.|-...-.++|++.|.+|...+..+.+++.|+.=|..
T Consensus 133 kde~s~~y~~~~~~~~~e~lEe~~g~~iT~e~L~da~~r~N~~rea~~k~~kL~~ 187 (379)
T COG1775 133 KDEPSVKYWHNELDKFKELLEELTGNEITEEKLRDAIARYNRLREALAKLYKLAK 187 (379)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4333488999999999999999998999999999999999999999888877765
No 146
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.62 E-value=1.8e+02 Score=26.33 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
+|.+.++.++.+.+++.+...+...++-....|+......--|++
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 333334444444444444444444444444444444444444433
No 147
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=52.52 E-value=99 Score=26.14 Aligned_cols=56 Identities=13% Similarity=0.385 Sum_probs=33.0
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 242 GDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 242 pDIAsnf~lKs~~lRs~ym~~Ll~LIetL~--~spl~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
+++|.-|.+.-..+| +|-+. +||..-. .+.-+-.+..+|..+ ..+..|++.||-|.
T Consensus 4 ~e~a~~~gvs~~tlr-~ye~~--gll~~~~r~~~gyR~Y~~~~l~~l-~~I~~lr~~G~sL~ 61 (113)
T cd01109 4 KEVAEKTGLSADTLR-YYEKE--GLLPPVKRDENGIRDFTEEDLEWL-EFIKCLRNTGMSIK 61 (113)
T ss_pred HHHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCCccCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 455555555555555 44332 3332111 122367888888865 56667899999886
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.48 E-value=1.7e+02 Score=32.92 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=7.4
Q ss_pred ccCcccchhHHH
Q 015660 246 ANCNLESNSMRA 257 (403)
Q Consensus 246 snf~lKs~~lRs 257 (403)
.++.+.|.|-|-
T Consensus 334 ~~~~~~ddH~RD 345 (652)
T COG2433 334 LKISVSDDHERD 345 (652)
T ss_pred cCCCCCCchHHH
Confidence 456666777664
No 149
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=52.11 E-value=2e+02 Score=26.81 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
.++.+..+-......|..++.+-+.++.|-.++.-||.+|+.-..+-+.
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556655555555666666666666666554444333
No 150
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.94 E-value=83 Score=30.61 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH----hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKE----SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~----rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~k 396 (403)
..+...++|+++|...+|+-..+.+-.+ --++.++|=.+|..+..-|.+.+..++-.+.+|..|
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888999999888888776554321 224556677788888888888888899888888654
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.87 E-value=73 Score=28.85 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 015660 364 KTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
++...+.+|+.+...|...+..+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333
No 152
>PRK14157 heat shock protein GrpE; Provisional
Probab=51.80 E-value=25 Score=34.66 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
++.+++++|-++..+..+..++..-=+....+|-...|+.+|
T Consensus 92 e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dL 133 (227)
T PRK14157 92 EAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTAL 133 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555554455555555444444444
No 153
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.43 E-value=65 Score=29.17 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=10.7
Q ss_pred HHHhhhHHhHHHHHHHHHHHHH
Q 015660 353 KEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 353 kev~d~~~rv~e~k~RL~~LE~ 374 (403)
..+...+..+.++.+||..|..
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555543
No 154
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.39 E-value=2.3e+02 Score=30.51 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=10.8
Q ss_pred hhHHhHHHHHHHHHHHHHh
Q 015660 357 GLKESVAKTKARLSDLELE 375 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~e 375 (403)
|+.+-++.|..||+.||+-
T Consensus 350 dIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 350 DIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666643
No 155
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.14 E-value=1.7e+02 Score=31.84 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
++-+..|+.+|+.+.++|-..+.++||=.++..+
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455678888888888888888888888777654
No 156
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.02 E-value=2.7e+02 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=31.5
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 274 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 274 pl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
|++.+-+.||.++....+-|+..-+.+|--+.|+.
T Consensus 111 PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~ 145 (248)
T cd07619 111 PLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQ 145 (248)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHH
Confidence 56888899999999999999999999999999985
No 157
>PRK00106 hypothetical protein; Provisional
Probab=50.97 E-value=2.1e+02 Score=31.54 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 341 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 341 LEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
|+...+.|.++++++.. +..+...+..+|+.....+.+.+.....++++..|
T Consensus 113 LekRee~LekrE~eLe~---kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 113 LDRKDENLSSKEKTLES---KEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444444433 33333334444444444444444444455554443
No 158
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=50.91 E-value=64 Score=25.28 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
+-|...+++|.+++.+...|...|..|+
T Consensus 39 eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 39 EVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999888887664
No 159
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=50.90 E-value=2e+02 Score=26.47 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 015660 260 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-------LRNILNEISEAIEFSTQHQTIDAAKANCVN 332 (403)
Q Consensus 260 m~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW-------L~~KLeEV~Eare~~~~~~~~e~~K~~~d~ 332 (403)
++.|.+-|-.|++ ++..+..+|.+|...-.-|.. .||= |+..|..-.++..++..|++-++.......
T Consensus 8 iE~LInrInelQQ--aKKk~~EELgEa~~l~eaL~~---ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~ 82 (134)
T PF15233_consen 8 IEDLINRINELQQ--AKKKSSEELGEAQALWEALQR---ELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQ 82 (134)
T ss_pred HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999999999 589999999998776544432 2333 344444445665677777763332221100
Q ss_pred HH--HH-HHHHHHHHHHHHHHHHHHHhh
Q 015660 333 LL--ES-TKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 333 ~~--e~-~~~ELEe~leeL~~kekev~d 357 (403)
.+ +- .+-+.+.+|++|-.+-|..=+
T Consensus 83 ~~~~eck~R~~fe~qLE~lm~qHKdLwe 110 (134)
T PF15233_consen 83 TLLQECKLRLDFEEQLEDLMGQHKDLWE 110 (134)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 133556666666655555433
No 160
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.81 E-value=2.1e+02 Score=31.16 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=5.0
Q ss_pred HHHHhhhhhhhc
Q 015660 382 IIQATQSKVTKF 393 (403)
Q Consensus 382 ~~~~~kSKV~kf 393 (403)
.+..++-+++.|
T Consensus 141 ll~Pl~e~l~~f 152 (475)
T PRK10361 141 LLSPLREQLDGF 152 (475)
T ss_pred HHhhHHHHHHHH
Confidence 334444444444
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.00 E-value=1.8e+02 Score=25.71 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 015660 255 MRAYYLECLCSVVQEL 270 (403)
Q Consensus 255 lRs~ym~~Ll~LIetL 270 (403)
--..-+|+|-+||..-
T Consensus 32 ~~~~vin~i~~Ll~~~ 47 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQR 47 (151)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3344455555555443
No 162
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.77 E-value=1.3e+02 Score=25.88 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 330 CVNLLESTKKELESQ--MNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 330 ~d~~~e~~~~ELEe~--leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
.++++...+++|+-+ -.++...+.+|.+.+-++.++.++|..+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555554 45666666666666666666666665554
No 163
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.71 E-value=2.9e+02 Score=29.63 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 015660 327 KANCVNLLESTKKELESQMNELALKEKEVAGLKESV 362 (403)
Q Consensus 327 K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv 362 (403)
||...|.++-..+.|+...++|....+++.+.+.-+
T Consensus 234 kDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 234 KDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556566666666666665555555444333
No 164
>PRK14154 heat shock protein GrpE; Provisional
Probab=49.55 E-value=31 Score=33.46 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+++++++++.++++++.++..+..++.+++.--+....+|...+|+-.||
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777777777777777777777777777777766666654
No 165
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.48 E-value=1.8e+02 Score=30.49 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHh
Q 015660 361 SVAKTKARLSDLELE 375 (403)
Q Consensus 361 rv~e~k~RL~~LE~e 375 (403)
++.+..+.+.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 84 ELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 166
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=49.33 E-value=1.5e+02 Score=33.60 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 260 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 260 m~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
=|.|+.=-+.|...++-++=+.||..-...|+.=. +-|+--|+.+..++
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakVDeL~~E~------~vLrgElea~kqak 352 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKVDELTCEK------DVLRGELEAVKQAK 352 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHH------HHHhhHHHHHHHHH
Confidence 35555555555444444555555544333333222 44555444444443
No 167
>PRK14141 heat shock protein GrpE; Provisional
Probab=49.19 E-value=29 Score=33.64 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 364 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
+++.++-++..+..++.++..-=+....+|....|+-+|
T Consensus 49 elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dL 87 (209)
T PRK14141 49 ELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDM 87 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 168
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=48.99 E-value=93 Score=34.09 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhh
Q 015660 300 VDWLRNILNEISEAIEFSTQH 320 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~ 320 (403)
+..+..++.++.++.+++++.
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~ 65 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSY 65 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555554443
No 169
>PF14772 NYD-SP28: Sperm tail
Probab=48.76 E-value=1.2e+02 Score=25.59 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=17.9
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 320 HQTIDAAKANCVNLLESTKKELESQMNELALKEKE 354 (403)
Q Consensus 320 ~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~keke 354 (403)
+.+++..+..|++.|..+..=|.+...+|..++.+
T Consensus 57 ~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deq 91 (104)
T PF14772_consen 57 RKEIEEQKQACERIIDRKDALIKELQQELKEADEQ 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555455544555555444
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.68 E-value=63 Score=30.08 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAI 314 (403)
Q Consensus 300 vdWL~~KLeEV~Ear 314 (403)
=++|-.+|.......
T Consensus 90 ~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 90 KGELAQQLVELNDEL 104 (194)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 356666666555444
No 171
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.53 E-value=2e+02 Score=27.74 Aligned_cols=16 Identities=19% Similarity=0.055 Sum_probs=9.2
Q ss_pred ccccccCcccchhHHH
Q 015660 242 GDIAANCNLESNSMRA 257 (403)
Q Consensus 242 pDIAsnf~lKs~~lRs 257 (403)
|=|++.+.-..+.+|.
T Consensus 78 GWV~~~~Ls~~p~~~~ 93 (206)
T PRK10884 78 AWIPLKQLSTTPSLRT 93 (206)
T ss_pred EeEEHHHhcCCccHHH
Confidence 5555655555666664
No 172
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.47 E-value=1.7e+02 Score=25.61 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHh
Q 015660 281 AKVKEMMAVLKDVES 295 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ 295 (403)
.++..+..+|..|..
T Consensus 37 ~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 37 NELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHhhcc
Confidence 455566666666653
No 173
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.31 E-value=2.7e+02 Score=31.81 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=11.2
Q ss_pred ccEEeeccchHHHHHHHhhccc
Q 015660 222 GKYHVRASISSILQSIISRYGD 243 (403)
Q Consensus 222 nGfqVl~Sqv~~v~~IFeKHpD 243 (403)
+.+-+..++-.-+..++..++.
T Consensus 440 ~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 440 GAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred CCEEEEECChHHHHHHHhcCCC
Confidence 3445555555555555555444
No 174
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.24 E-value=1.5e+02 Score=24.12 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHH
Q 015660 361 SVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~ 381 (403)
.+.+.+.++..++.+...|..
T Consensus 48 ~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555544444433
No 175
>PRK14145 heat shock protein GrpE; Provisional
Probab=48.23 E-value=40 Score=32.45 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++.+.++++.++++++-++..+..+..+++.-=+....+|...+|+-+||
T Consensus 53 ~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 53 KLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777777777777777777766666554
No 176
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=48.06 E-value=6 Score=42.36 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred eccchHHHHHHHhhcccccccCccc--------------chhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHH
Q 015660 227 RASISSILQSIISRYGDIAANCNLE--------------SNSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMM 287 (403)
Q Consensus 227 l~Sqv~~v~~IFeKHpDIAsnf~lK--------------s~~lRs~ym~~Ll~LIetL~~sp-----l~eLS~~dL~ea~ 287 (403)
..-+-.+|++|++---|+...-... ...+...=|+-|...||+||++. ++++-.+||..|.
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~ 469 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 4456788999998765554433332 23445566899999999999876 4455555555555
Q ss_pred HHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 015660 288 AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 367 (403)
Q Consensus 288 ~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~ 367 (403)
..|. .|-. |.+++ -+.|..++..++..+ +-...+|.+++.+|++-+.+|..+++
T Consensus 470 ~El~---------~W~~-------e~~~~---~~~l~~e~~~t~~~~-------~pl~~~L~ele~~I~~~~~~i~~~ka 523 (539)
T PF10243_consen 470 KELE---------MWRS-------EYRQH---AEALQEEQSITDEAL-------EPLKAQLAELEQQIKDQQDKICAVKA 523 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---------HHHH-------HHHHH---HHHHHHHHhhhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2321 11111 122222333333222 33334556667777777777777777
Q ss_pred HHHHHHHhh
Q 015660 368 RLSDLELES 376 (403)
Q Consensus 368 RL~~LE~es 376 (403)
.+-+=+...
T Consensus 524 ~Il~Ne~~i 532 (539)
T PF10243_consen 524 NILKNEEKI 532 (539)
T ss_dssp ---------
T ss_pred HHHhhHHHH
Confidence 665544433
No 177
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.97 E-value=92 Score=34.72 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAI 314 (403)
Q Consensus 300 vdWL~~KLeEV~Ear 314 (403)
++||+++|.++...-
T Consensus 269 ~~fL~~qL~~l~~~L 283 (726)
T PRK09841 269 LEFLQRQLPEVRSEL 283 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888776444
No 178
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=47.76 E-value=1.7e+02 Score=32.35 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.4
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhh--hhhHHH
Q 015660 277 QMTKAKVKEMMAVLKDVESAQIDVDW--LRNILN 308 (403)
Q Consensus 277 eLS~~dL~ea~~~L~dL~~agfKvdW--L~~KLe 308 (403)
.-|+.+|..++.+|. .||+-|| |++||.
T Consensus 187 s~~EkEvE~~F~~ls----L~f~~D~~TLe~R~~ 216 (538)
T PF05781_consen 187 SASEKEVEAEFLRLS----LGFKCDRFTLEKRLK 216 (538)
T ss_pred CCcHHHHHHHHHHHH----HHhhhhhhhHHHHHH
Confidence 338888888888885 7999999 466665
No 179
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=47.68 E-value=1e+02 Score=26.06 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 385 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~ 385 (403)
....|+.+.++|....+++.++..+|+++..=..+|...+.+|+..|..
T Consensus 50 ~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 50 NLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555566666667777777777777777777777777777766653
No 180
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=47.56 E-value=1.8e+02 Score=29.91 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 015660 258 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 337 (403)
Q Consensus 258 ~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~ 337 (403)
.++|...+-|.||+..+ +.+-.-++.--++|-++.|--|.-|++....=+-.----.++...+.+ .+.
T Consensus 202 ~alnfFIsSvnTl~nkT--------i~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~t~~~le~aq~~~----q~h 269 (341)
T KOG3876|consen 202 GALNFFISSVNTLVNKT--------IEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDALTKNLLEGAQEKF----QAH 269 (341)
T ss_pred HHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccccccccHHHHHHH----HHH
Confidence 56788888899998877 344556777788999999999999998832111000001111111111 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 338 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 338 ~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
+.+-|++.-+.+-|.+=..+ .||.-|-..|.-|+.-
T Consensus 270 kekYeKlrnDvaiKmkfLeE--NrIkVmh~QL~llhnA 305 (341)
T KOG3876|consen 270 KEKYEKLRNDVAIKMKFLEE--NRIKVMHKQLELLHNA 305 (341)
T ss_pred HHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHH
Confidence 23333333344444444444 5677777766666543
No 181
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.47 E-value=1.5e+02 Score=28.19 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
...++...++|+.++++|..+...+.++..+...++.+-..|+.+..+..+
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777666666666666666666666666666655555433
No 182
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.28 E-value=3.5e+02 Score=32.36 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhcch-------hhhccHHHHH----HHHHHHhHHHhcCcchhhhhhHHHHHHHHHH-hhhhhhh
Q 015660 255 MRAYYLECLCSVVQELQSTS-------LMQMTKAKVK----EMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQT 322 (403)
Q Consensus 255 lRs~ym~~Ll~LIetL~~sp-------l~eLS~~dL~----ea~~~L~dL~~agfKvdWL~~KLeEV~Eare-~~~~~~~ 322 (403)
+|.+||-=+-.=|+.|..=- ---|+++... +--..-..|+..+-+|+=|++.|.++.+.-- .....+.
T Consensus 401 ~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~ 480 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKEL 480 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67788777777777775321 1224555441 1122233455555677888888887776552 2233345
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 323 IDAAKANCVNLLESTKKELESQMNELALKEKE 354 (403)
Q Consensus 323 ~e~~K~~~d~~~e~~~~ELEe~leeL~~keke 354 (403)
+.++++.+...+....++|+.+.+++.+....
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444444433
No 183
>PRK12705 hypothetical protein; Provisional
Probab=47.15 E-value=4.2e+02 Score=29.06 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=2.9
Q ss_pred hhhhhHH
Q 015660 301 DWLRNIL 307 (403)
Q Consensus 301 dWL~~KL 307 (403)
-||.++.
T Consensus 23 ~~~~~~~ 29 (508)
T PRK12705 23 VLLKKRQ 29 (508)
T ss_pred HHHHHHH
Confidence 3444433
No 184
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.12 E-value=4.1e+02 Score=29.06 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 366 KARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 366 k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
.+++..|+.-..+|...+..+-.++
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444433
No 185
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.76 E-value=4.6e+02 Score=29.35 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 015660 257 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 314 (403)
Q Consensus 257 s~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW--L~~KLeEV~Ear 314 (403)
..||+-+=+||-+|++.- -+.|.+.-.-..+|+.+|+.|+- +.++|..+.+..
T Consensus 210 ~~~~e~IP~L~~e~~~~l-----P~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l 264 (570)
T COG4477 210 RSIMERIPSLLAELQTEL-----PGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQL 264 (570)
T ss_pred HHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHH
Confidence 478999999999997654 36677777888899999998864 445555555544
No 186
>PRK14127 cell division protein GpsB; Provisional
Probab=46.73 E-value=1.2e+02 Score=26.76 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 015660 364 KTKARLSDLELE 375 (403)
Q Consensus 364 e~k~RL~~LE~e 375 (403)
++-.||++||..
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 345566666644
No 187
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.68 E-value=2.3e+02 Score=33.84 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
.|.+.++++..++..+.++.+.+...+....++-+-|.+.+-|
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 188
>PRK14146 heat shock protein GrpE; Provisional
Probab=46.63 E-value=37 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+.++.++++++.++++++-++..+..++.++..-=+....+|....|+-+||
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lL 111 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFL 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667777888888888888888888877788888887777776665
No 189
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=2.1e+02 Score=34.25 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
.+..|+....||..-+.++.++.-++.+++.+|.+.|.....|.+.+--+..+
T Consensus 702 ~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 702 LKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555554444444433
No 190
>PRK14156 heat shock protein GrpE; Provisional
Probab=46.55 E-value=92 Score=29.50 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=34.4
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+..+++++.++++++-++..+..++.++..-=+....+|....|+-+||
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445567777777888877777777777777777777776666666554
No 191
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=46.43 E-value=2.8e+02 Score=27.56 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.3
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 015660 273 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 309 (403)
Q Consensus 273 spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeE 309 (403)
.|++.+.+.||.++....+-|+..-+.+|-.+.|+..
T Consensus 110 ~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~ 146 (246)
T cd07618 110 DPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQ 146 (246)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Confidence 3568888999999999999999999999999999853
No 192
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=46.38 E-value=73 Score=28.65 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
++||.-+|++|.+..+|..+||.|.+=|..+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556789999999999999988777543
No 193
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.14 E-value=1.8e+02 Score=24.47 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=23.2
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
..+..+++.+..++.+++.....+.+.+..++.+++.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666666666666666666666666666654
No 194
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.83 E-value=4.3e+02 Score=28.76 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.1
Q ss_pred HHHHHH
Q 015660 367 ARLSDL 372 (403)
Q Consensus 367 ~RL~~L 372 (403)
+.|..|
T Consensus 404 e~l~~L 409 (569)
T PRK04778 404 EMLQGL 409 (569)
T ss_pred HHHHHH
Confidence 333333
No 195
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.67 E-value=1.4e+02 Score=25.48 Aligned_cols=59 Identities=10% Similarity=0.298 Sum_probs=32.0
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660 243 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305 (403)
Q Consensus 243 DIAsnf~lKs~~lRs~ym~~Ll~LIetL--~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~ 305 (403)
++|.-+.+.-..+| +|-+ .+||.-- ..+.-+-.+..++..+ ..+..|++.||-+.=++.
T Consensus 5 eva~~~gvs~~tLR-yYe~--~GLl~p~~r~~~gyR~Y~~~~i~~l-~~I~~lr~~G~sl~eI~~ 65 (123)
T cd04770 5 ELAKAAGVSPDTIR-YYER--IGLLPPPQRSENGYRLYGEADLARL-RFIRRAQALGFSLAEIRE 65 (123)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCCCCCCCCccCCHHHHHHH-HHHHHHHHCCCCHHHHHH
Confidence 44445555555554 3433 2333211 1223467788888776 555668999998643333
No 196
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=45.58 E-value=3.1e+02 Score=26.97 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
++-+...++.++....|+-++-+.....+|.+.-..++.+|+.+..-+..++.++..+.+++.
T Consensus 74 ~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 74 HIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 455566667777777788888887777888888889999999999998889988888887763
No 197
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=45.18 E-value=61 Score=26.09 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcccccccCc-c----------cchhHHH---HHHHHHHHHHHHH
Q 015660 231 SSILQSIISRYGDIAANCN-L----------ESNSMRA---YYLECLCSVVQEL 270 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-l----------Ks~~lRs---~ym~~Ll~LIetL 270 (403)
..+..++|++||++..-|. + .|+.++. .+|++|-.+|..|
T Consensus 21 ~~~f~~lF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l 74 (110)
T PF00042_consen 21 SEFFQRLFEEYPDYKKLFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNL 74 (110)
T ss_dssp HHHHHHHHHHSGGGGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCHHHHhhcccccccchHHHHhccchHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999998 4 3455665 5666777777666
No 198
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.03 E-value=3.6e+02 Score=29.40 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 015660 341 LESQMNELALKEKEVA 356 (403)
Q Consensus 341 LEe~leeL~~kekev~ 356 (403)
|+...+.|..+++++.
T Consensus 92 Lekr~e~Lekre~~Le 107 (514)
T TIGR03319 92 LDRKMESLDKKEENLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 199
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=44.86 E-value=3e+02 Score=26.71 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHH----HHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 015660 258 YYLECLCSVVQELQSTSLMQMTKAKV----KEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 317 (403)
Q Consensus 258 ~ym~~Ll~LIetL~~spl~eLS~~dL----~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~ 317 (403)
.|=.++..+|.+.++. ..++...+ .+-..++.||.++---+.+|..|.+-..+..+-+
T Consensus 48 e~Ek~i~~~i~e~~~~--~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 48 EYEKTIAQMIEEKQKQ--KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHHHHHHhh--HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556677777776554 34444443 3445667777777777889999998877766444
No 200
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.72 E-value=4.6e+02 Score=33.31 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=99.3
Q ss_pred eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch-hhhccHHHHHHHHHHHhHHHhcC
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS-LMQMTKAKVKEMMAVLKDVESAQ 297 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~sp-l~eLS~~dL~ea~~~L~dL~~ag 297 (403)
|++++|.+++....=...+-+.|++.-+++ -+..+-|--=+..+-+.|.... -..+...++..+.+.|.-+.+-.
T Consensus 21 V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~----eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~ 96 (1822)
T KOG4674|consen 21 VDVDVFKKLPKKSKDFESLKDEDGKTEVNH----EQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSER 96 (1822)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 889999999988888888888888776654 3334444455667777776554 24566788999999999999988
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHhHHHHHHHHH
Q 015660 298 IDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL-------KESVAKTKARLS 370 (403)
Q Consensus 298 fKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~-------~~rv~e~k~RL~ 370 (403)
-.+-|.-.++.-+.....-.+ ..+..+|..-...++.++.|||....+......+++.. ..|..++..-.+
T Consensus 97 ~~l~~~~~~~~~~~~~l~~~~--se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~v 174 (1822)
T KOG4674|consen 97 SNLSWEIDALKLENSQLRRAK--SELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDV 174 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889888777776554432111 22223344444556666667766655555544444444 444444444444
Q ss_pred HHHHhhhhHHH
Q 015660 371 DLELESNRLEQ 381 (403)
Q Consensus 371 ~LE~ess~l~~ 381 (403)
.++.+..+|.|
T Consensus 175 s~q~k~~rl~Q 185 (1822)
T KOG4674|consen 175 SSQLKEERLEQ 185 (1822)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 201
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.65 E-value=1.3e+02 Score=33.94 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHHHHH
Q 015660 252 SNSMRAYYLECLCSVVQ 268 (403)
Q Consensus 252 s~~lRs~ym~~Ll~LIe 268 (403)
|..+|..+|-+++-+|-
T Consensus 24 S~~~r~~w~~~~l~iil 40 (907)
T KOG2264|consen 24 SAFLRFIWFVFILYIIL 40 (907)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55677788776655553
No 202
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=44.51 E-value=20 Score=36.39 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 317 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 317 ~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
+|-.-++++.+++-+|.-..+-+|-+|.+.+=.|++||-+|
T Consensus 31 YDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcD 71 (299)
T PF02009_consen 31 YDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCD 71 (299)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 44556666777887777777888899999999999999777
No 203
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.06 E-value=2.9e+02 Score=32.64 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHhcCcchhhhhhHHHHHHH
Q 015660 292 DVESAQIDVDWLRNILNEISE 312 (403)
Q Consensus 292 dL~~agfKvdWL~~KLeEV~E 312 (403)
+|.++..|+.=|-.||+|+-.
T Consensus 338 ~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHH
Confidence 345555555555566665443
No 204
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.04 E-value=2e+02 Score=24.47 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.+.++..|++.+..++..|+.....+.+.+..++++++..
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777777777777777776543
No 205
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.00 E-value=1.3e+02 Score=30.51 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred hhhHHhHHHHHHHHHHHH-------HhhhhHHHHHHHhhhhhhhccccchh
Q 015660 356 AGLKESVAKTKARLSDLE-------LESNRLEQIIQATQSKVTKFSQKSLA 399 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE-------~ess~l~~~~~~~kSKV~kf~~kSl~ 399 (403)
..+..++..+..||.+++ .+..+-.+.+..++.+.....|-+|+
T Consensus 266 ~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 266 QELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHH
Confidence 333344455555555444 33334455566666666666555543
No 206
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.87 E-value=1e+02 Score=24.56 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHh
Q 015660 361 SVAKTKARLSDLELE 375 (403)
Q Consensus 361 rv~e~k~RL~~LE~e 375 (403)
++..+..+|.+++.-
T Consensus 35 ~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 35 DIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 207
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.70 E-value=1.9e+02 Score=24.37 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHHHh
Q 015660 281 AKVKEMMAVLKDVES 295 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ 295 (403)
.++.+...++..|+.
T Consensus 27 ~~~~E~~~v~~EL~~ 41 (105)
T cd00632 27 AQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344555555555553
No 208
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.49 E-value=5e+02 Score=29.73 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELA 349 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~ 349 (403)
.++.+++++++.+.+|.
T Consensus 578 ~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 578 AIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 209
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=43.33 E-value=2.9e+02 Score=31.71 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kS 388 (403)
-.+...+|++.+.|..-+-.--++||.+.--|-+.|..+|+
T Consensus 78 ~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 78 RKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555566666666666666666654
No 210
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.26 E-value=3.3e+02 Score=26.74 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 015660 365 TKARLSDLELESNRLEQII 383 (403)
Q Consensus 365 ~k~RL~~LE~ess~l~~~~ 383 (403)
....+.++..++..|..-|
T Consensus 79 ~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 211
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.23 E-value=1.8e+02 Score=30.54 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=12.1
Q ss_pred cCcchhhhhhHHHHHHHHH
Q 015660 296 AQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 296 agfKvdWL~~KLeEV~Ear 314 (403)
+|+....|+.++.++.+..
T Consensus 325 vg~~~~~l~~~~~~l~~~~ 343 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEEL 343 (451)
T ss_pred EecCcHHHHHHHHHHHHHH
Confidence 3666667777776665554
No 212
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.20 E-value=4.1e+02 Score=29.56 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHh----------hHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 015660 308 NEISEAIEFSTQHQTIDAAKAN----------CVNLLESTKK----ELESQMNELALKEKEVAGLKESVAKTKARL 369 (403)
Q Consensus 308 eEV~Eare~~~~~~~~e~~K~~----------~d~~~e~~~~----ELEe~leeL~~kekev~d~~~rv~e~k~RL 369 (403)
+.|.+|+++...-+++++++.. ....|+.+++ .|+.+-.+...+|.|++.+++++.+.+..|
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4456777777777777766322 1222333333 456666777777777777777777765544
No 213
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=43.13 E-value=3.4e+02 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=16.4
Q ss_pred chHHHHHHHhhcccccccCccc
Q 015660 230 ISSILQSIISRYGDIAANCNLE 251 (403)
Q Consensus 230 qv~~v~~IFeKHpDIAsnf~lK 251 (403)
.+..-+++|.+||.. ++..+.
T Consensus 58 t~ky~Rk~fGRYG~a-SgV~P~ 78 (217)
T PF10147_consen 58 TVKYKRKLFGRYGLA-SGVDPG 78 (217)
T ss_pred hHHHHHHHHHhhhhh-cCCChh
Confidence 456778999999987 777664
No 214
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.02 E-value=6.5e+02 Score=31.12 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=7.4
Q ss_pred HHHHHHhhhhhhhc
Q 015660 380 EQIIQATQSKVTKF 393 (403)
Q Consensus 380 ~~~~~~~kSKV~kf 393 (403)
+..+..|.-||.-|
T Consensus 1741 ~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1741 ESVLDHINERVLYY 1754 (1758)
T ss_pred HHHHHHHhhhhhhh
Confidence 33455666666544
No 215
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.96 E-value=2e+02 Score=31.38 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 342 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 342 Ee~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
++..+.|.+.+++..++.+.+..++..-.++.....++...+..+|.+|++-
T Consensus 382 ~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 382 EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444555555555555555555666666666666553
No 216
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.88 E-value=1.4e+02 Score=22.36 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015660 287 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVA 356 (403)
Q Consensus 287 ~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~ 356 (403)
...+..++..||-|+ ||.+...+.+. .. .........+....+++++++++|.+.+..+.
T Consensus 4 L~~I~~~r~lGfsL~-------eI~~~l~l~~~-~~--~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 4 LQFIRRLRELGFSLE-------EIRELLELYDQ-GD--PPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHTT--HH-------HHHHHHHHCCS-HC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-------HHHHHHhccCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888754 55444433222 11 11112223555555566666666655555443
No 217
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=42.66 E-value=1.6e+02 Score=24.62 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.|+..+..|......+.++..|+.+...+|..++.....+..++
T Consensus 22 aLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 22 ALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666677777777777777777666665544
No 218
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=1.1e+02 Score=28.06 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHhcC
Q 015660 281 AKVKEMMAVLKDVESAQ 297 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ag 297 (403)
.||..+-..+.+|++|+
T Consensus 37 ~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 37 ADIKEAKTEIENLEDAS 53 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 219
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.42 E-value=3.5e+02 Score=27.50 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
++++....|..++.++.++..++.+++..+.....+..+|...+.....|+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444444444444444444444444444444444444444444443
No 220
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.37 E-value=88 Score=34.04 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
|||++|+.| +.++.....+..+...+|.+||.+...|...+..++++
T Consensus 80 ELEKqLaaL---rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 80 QMQKQYEEI---RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 444444444 22333222355566777777777777776666444443
No 221
>PRK14150 heat shock protein GrpE; Provisional
Probab=42.32 E-value=56 Score=31.08 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 364 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+++.++-++..+..++.++..-=+....+|...+|+.+||
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL 95 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELL 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666776677666666666666666666666665554
No 222
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=42.21 E-value=2.5e+02 Score=27.53 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 015660 282 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 316 (403)
Q Consensus 282 dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~ 316 (403)
+++.+.+.|..|.. +.+|+..+++.-.+..++
T Consensus 117 e~~~~~~nlk~l~~---~ee~~~q~~d~~e~~ik~ 148 (205)
T KOG1003|consen 117 DLRILDSNLKSLSA---KEEKLEQKEEKYEEELKE 148 (205)
T ss_pred HHHHhHhHHHHHHH---HHHHHhhhHHHHHHHHHH
Confidence 44555555555553 347777777766555543
No 223
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.15 E-value=3.6e+02 Score=30.05 Aligned_cols=8 Identities=13% Similarity=-0.030 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 015660 283 VKEMMAVL 290 (403)
Q Consensus 283 L~ea~~~L 290 (403)
|..+...|
T Consensus 155 L~~~~~~L 162 (546)
T PF07888_consen 155 LLKENEQL 162 (546)
T ss_pred HHHHHHHH
Confidence 33333333
No 224
>PLN02939 transferase, transferring glycosyl groups
Probab=42.04 E-value=3.6e+02 Score=32.02 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 015660 283 VKEMMAVLKDVESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 283 L~ea~~~L~dL~~agfKvdWL~~KLeEV~Ea 313 (403)
|.++..+|.+=+..+=++.-|+.||-|-...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDAR 185 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhh
Confidence 4444555555555566666666666664333
No 225
>PRK10869 recombination and repair protein; Provisional
Probab=41.98 E-value=3.2e+02 Score=29.80 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.1
Q ss_pred HHHHHH
Q 015660 340 ELESQM 345 (403)
Q Consensus 340 ELEe~l 345 (403)
++++++
T Consensus 328 ~l~~eL 333 (553)
T PRK10869 328 QLLEEQ 333 (553)
T ss_pred HHHHHH
Confidence 333333
No 226
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=41.92 E-value=3.3e+02 Score=33.33 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=55.4
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHH----HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 015660 283 VKEMMAVLKDVESAQIDVDWLRNILNE----ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN---ELALKEKEV 355 (403)
Q Consensus 283 L~ea~~~L~dL~~agfKvdWL~~KLeE----V~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~le---eL~~kekev 355 (403)
+..+...+.|++..+-+.+=+...|.- +.--.++.+.......+.+.....++...++...+.. .|...-.+.
T Consensus 787 ~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~ 866 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNEL 866 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544433 2211222121122112222223344444443333332 333333445
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
++...++..--+++.+|+..-.+|..-+..+.|||...
T Consensus 867 k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 867 KEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666667777777788888888888888877643
No 227
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.85 E-value=5.8e+02 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
++...+.+..-+.-.++++...+..++-....+...+..+++.+....
T Consensus 809 ~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 809 ELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444333444444444444444433
No 228
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.84 E-value=2.1e+02 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
..+..++...+..+...++..+..+..++.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 229
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=41.73 E-value=1.7e+02 Score=31.59 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 337 TKKELESQMNELALKEK-------------EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 337 ~~~ELEe~leeL~~kek-------------ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
-+.+-|++|.+|+||-- +-.+.+.|.+=-.+|+.+++-+. +|+..--+-+||+.+-.+
T Consensus 312 ek~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~-nlsra~~dKrsKl~r~r~ 382 (506)
T KOG2441|consen 312 EKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDR-NLSRAAPDKRSKLQRDRG 382 (506)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhh-hhhhhccchhhhhhhccC
Confidence 33455777788887642 33444444444578888888776 666655666777765443
No 230
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.46 E-value=3.2e+02 Score=27.69 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
..+++...++.+.-++..+...+++.++..|.++++|+.+..
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555544
No 231
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.01 E-value=2e+02 Score=28.70 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhccccchhhhc
Q 015660 382 IIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 382 ~~~~~kSKV~kf~~kSl~D~l 402 (403)
.+..++..+.+..-.+.+||.
T Consensus 198 ~l~~a~~~l~~~~I~AP~dG~ 218 (346)
T PRK10476 198 ALAIAELHLEDTTVRAPFDGR 218 (346)
T ss_pred HHHHHHHHhhcCEEECCCCcE
Confidence 344456666777777777775
No 232
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=40.85 E-value=60 Score=34.01 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=26.8
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 318 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 318 ~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
|-.-+++...++-++.--.+=+|.+|.+.+=+|++||-+|
T Consensus 55 DNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCD 94 (353)
T TIGR01477 55 DNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCD 94 (353)
T ss_pred CCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhc
Confidence 3344445555666555555667788888888888888666
No 233
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.80 E-value=5.2e+02 Score=31.02 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=20.4
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..|+++.+.-.+++..+|+-....--+++-|...-+.||
T Consensus 492 e~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 492 ELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666666666666666654444333444443333333
No 234
>PRK14147 heat shock protein GrpE; Provisional
Probab=40.65 E-value=49 Score=30.98 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=5.9
Q ss_pred HHHHHHHhhhHHhHH
Q 015660 349 ALKEKEVAGLKESVA 363 (403)
Q Consensus 349 ~~kekev~d~~~rv~ 363 (403)
.+...+....|.|..
T Consensus 42 lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 42 LRERADLENQRKRIA 56 (172)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444443
No 235
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=40.57 E-value=1.4e+02 Score=33.83 Aligned_cols=82 Identities=29% Similarity=0.211 Sum_probs=45.2
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 300 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
..-|+.+|.++.+.++-..++.-++...++....++....+....-.++..+|.++...-+++.-.+.++.+.|++-+.|
T Consensus 580 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~~~~~~~~~~~~~~~~~~~e~k~~~l 659 (664)
T KOG4568|consen 580 AAALREKLKEASENKENEVQFQRAELTLENIRHQLELECQQTKDSEAELRLKELEKQKLVEEIEFLKEQDKQNENKLTDL 659 (664)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 44566666666666665555555555555554444433333333334444455554454555666677777777776665
Q ss_pred HH
Q 015660 380 EQ 381 (403)
Q Consensus 380 ~~ 381 (403)
+.
T Consensus 660 ~~ 661 (664)
T KOG4568|consen 660 ES 661 (664)
T ss_pred Hh
Confidence 43
No 236
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.39 E-value=7.7e+02 Score=30.09 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=6.0
Q ss_pred hhhhhhHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAI 314 (403)
Q Consensus 300 vdWL~~KLeEV~Ear 314 (403)
++=++.+|+++.++.
T Consensus 232 ~~~~~~~le~l~~~~ 246 (1353)
T TIGR02680 232 LDEYRDELERLEALE 246 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 237
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.26 E-value=1.6e+02 Score=25.49 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=18.9
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVDW 302 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvdW 302 (403)
-+-.+.++|..+.-+ ..|+.+||-|+=
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~sL~e 62 (126)
T cd04785 36 YRLYGAAHVERLRFI-RRARDLGFSLEE 62 (126)
T ss_pred ccccCHHHHHHHHHH-HHHHHCCCCHHH
Confidence 366778887766544 458899997653
No 238
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.20 E-value=4.4e+02 Score=30.51 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGL 358 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~ 358 (403)
..++.+..+|++...-|.++.+.+..+
T Consensus 343 sdve~Lr~rle~k~~~l~kk~~~~~~~ 369 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQAQIEKL 369 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444444444433
No 239
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=40.02 E-value=3.2e+02 Score=25.79 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=38.1
Q ss_pred hHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 015660 291 KDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV-------NLLESTKKELESQMNELALKEKEVAGLKESVA 363 (403)
Q Consensus 291 ~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d-------~~~e~~~~ELEe~leeL~~kekev~d~~~rv~ 363 (403)
+|.=..|+.+||-+.=++=| + +..++-+.+... ..+..++.||++...|=+.+++.++|.
T Consensus 37 SdfY~~gvEfdw~~eFveyV----~----cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd~----- 103 (158)
T PF03112_consen 37 SDFYSSGVEFDWKDEFVEYV----D----CVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKDL----- 103 (158)
T ss_pred hHHHHhhhhhhHHHHHHHHH----H----HHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHHH-----
Confidence 35566899999976444322 1 222333322222 334445555555555555555555552
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 015660 364 KTKARLSDLELESNRLEQ 381 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~ 381 (403)
++.++.++.++..=+.+
T Consensus 104 -LK~ki~~I~~~~~Li~~ 120 (158)
T PF03112_consen 104 -LKIKIDEIMNKYPLINH 120 (158)
T ss_pred -HHHHHHHHHhhccHHHH
Confidence 33444455555444433
No 240
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=39.46 E-value=2.4e+02 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.3
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-+-.+.++|..+.-+ ..+..+||-+.
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~~l~ 61 (107)
T cd01111 36 YGLFDDCALQRLRFV-RAAFEAGIGLD 61 (107)
T ss_pred CeecCHHHHHHHHHH-HHHHHcCCCHH
Confidence 466888888776655 67999999643
No 241
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.43 E-value=2.1e+02 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHH
Q 015660 303 LRNILNEISEAI 314 (403)
Q Consensus 303 L~~KLeEV~Ear 314 (403)
|+.|.....+.+
T Consensus 9 LE~ki~~aveti 20 (72)
T PF06005_consen 9 LEEKIQQAVETI 20 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 242
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.40 E-value=1.2e+02 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
.|+++...+.+.|+++++++..+..|...+..++.+..+|+..+.-|+..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555566666666666666666666666665
No 243
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.27 E-value=3.8e+02 Score=26.45 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=9.3
Q ss_pred cccccCcccchhHH
Q 015660 243 DIAANCNLESNSMR 256 (403)
Q Consensus 243 DIAsnf~lKs~~lR 256 (403)
|++++.+...|.--
T Consensus 124 D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 124 DFVADLRAPTPTAA 137 (319)
T ss_pred HHHHHhhCCCHHHH
Confidence 66777777777543
No 244
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=39.15 E-value=3.9e+02 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.5
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 274 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 274 pl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
|++.+=+.|+.++..+.+.|+..-+.+|--++|+.
T Consensus 123 PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~ 157 (229)
T cd07616 123 PLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677888888888888888888887777774
No 245
>PRK14164 heat shock protein GrpE; Provisional
Probab=39.05 E-value=44 Score=32.68 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESVAKT 365 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv~e~ 365 (403)
..+++++++....|.+...+....|.|...-
T Consensus 80 ~~le~el~el~d~llR~~AE~eN~RkR~~rE 110 (218)
T PRK14164 80 STVEAQLAERTEDLQRVTAEYANYRRRTERE 110 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555333
No 246
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.01 E-value=3.5e+02 Score=29.64 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 015660 256 RAYYLECLCSVVQ 268 (403)
Q Consensus 256 Rs~ym~~Ll~LIe 268 (403)
|.+|-+.+..+.+
T Consensus 334 r~y~e~~~~e~~q 346 (493)
T KOG0804|consen 334 RKYYEQIMSEYEQ 346 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 4455444444443
No 247
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.74 E-value=3.7e+02 Score=25.92 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE- 354 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~keke- 354 (403)
+...+..+..+...|.-.... +++=|...|+.+.....- -+..+.+++......++...++|..++.+|...-..
T Consensus 65 q~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~--L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 65 QSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEA--LEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544443322 223333333333222211 123333445555556666667777777666655443
Q ss_pred HhhhHHhHHHHHHHHHHHHH
Q 015660 355 VAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ 374 (403)
.....+|...+..||.+...
T Consensus 141 r~~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 141 RNEREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666665543
No 248
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.64 E-value=5.3e+02 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=12.2
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
+..+.+++..+......+..+...+.+.+
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~l 554 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSL 554 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 249
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=38.38 E-value=3.2e+02 Score=25.11 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHH
Q 015660 336 STKKELESQMNELALKEKEVAGL-KESVAKTKARLSDLEL 374 (403)
Q Consensus 336 ~~~~ELEe~leeL~~kekev~d~-~~rv~e~k~RL~~LE~ 374 (403)
..+++-++=++++.++..+|++- ++.+..+++.-+.|+.
T Consensus 104 ~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 104 QRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566677888888887763 5555555655555553
No 250
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=38.14 E-value=2.8e+02 Score=24.41 Aligned_cols=61 Identities=26% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH---------HHHH----HHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAK---------TKAR----LSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e---------~k~R----L~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.++..+.++.+.+.++...+.+..+...+..+ +..+ +.+++.++..|.+.+.+-..-|+.|
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~F 129 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDF 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444445555444444444443333223222 2333 3455666666644443333333333
No 251
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.06 E-value=1.8e+02 Score=27.83 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHhh
Q 015660 361 SVAKTKARLSDLELES 376 (403)
Q Consensus 361 rv~e~k~RL~~LE~es 376 (403)
+..++..+|.+|+.+.
T Consensus 154 ~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 154 KREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 252
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.05 E-value=3.8e+02 Score=31.95 Aligned_cols=35 Identities=6% Similarity=0.196 Sum_probs=21.5
Q ss_pred hHHHhcCcch---hhhhhHHHHHHHHHHhhhhhhhHHH
Q 015660 291 KDVESAQIDV---DWLRNILNEISEAIEFSTQHQTIDA 325 (403)
Q Consensus 291 ~dL~~agfKv---dWL~~KLeEV~Eare~~~~~~~~e~ 325 (403)
.+|.+.|++- .=|++++..+....+.+.++.....
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5678888864 4556666666666655555554333
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.79 E-value=2.4e+02 Score=32.16 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=15.0
Q ss_pred eccEEeeccchHHHHHHHhhcccc
Q 015660 221 VGKYHVRASISSILQSIISRYGDI 244 (403)
Q Consensus 221 VnGfqVl~Sqv~~v~~IFeKHpDI 244 (403)
.+.+-+..+.-.-+..+...++.+
T Consensus 434 ~g~~viitTH~~eL~~~~~~~~~v 457 (771)
T TIGR01069 434 QNAQVLITTHYKELKALMYNNEGV 457 (771)
T ss_pred cCCEEEEECChHHHHHHhcCCCCe
Confidence 455666667766666666556555
No 254
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.72 E-value=5.8e+02 Score=32.69 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
+++.....+++.++.|.++..++.++.+-|..-...++++++...++..-++
T Consensus 1084 k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1084 KLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666667777667766666665555555555555555544443
No 255
>PRK14159 heat shock protein GrpE; Provisional
Probab=37.68 E-value=54 Score=30.97 Aligned_cols=42 Identities=10% Similarity=0.236 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
++.++++++-++..+..++.++..-=+....+|...+|+-+|
T Consensus 38 e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 38 DYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555455555555554444444
No 256
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=37.64 E-value=1.7e+02 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 363 AKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
.++..||.++...-..|..++..+-+|++
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555554555554
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.61 E-value=4.1e+02 Score=30.18 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=8.8
Q ss_pred CCchhhhHHHHHHHhhcc
Q 015660 16 SNPYHECGMACLEKIAQG 33 (403)
Q Consensus 16 ~NP~H~C~~~C~~~i~~~ 33 (403)
-|||-+ +.+|..-.+.+
T Consensus 110 ~~P~ee-A~~~A~LA~~G 126 (652)
T COG2433 110 LNPYEE-AYACARLASKG 126 (652)
T ss_pred CChHHH-HHHHHHHHhcC
Confidence 466654 55665443333
No 258
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=2.9e+02 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHhHHHHHHHHHH
Q 015660 350 LKEKEVAGLKESVAKTKARLSD 371 (403)
Q Consensus 350 ~kekev~d~~~rv~e~k~RL~~ 371 (403)
..++.....++|+.++++.|-.
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555443
No 259
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.52 E-value=6.4e+02 Score=28.77 Aligned_cols=118 Identities=16% Similarity=0.251 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcch---hhhcc--HHHHHHHHHHHhHHHhcCc----chhhhhhHHHHHHHHHHhhhhhh
Q 015660 251 ESNSMRAYYLECLCSVVQELQSTS---LMQMT--KAKVKEMMAVLKDVESAQI----DVDWLRNILNEISEAIEFSTQHQ 321 (403)
Q Consensus 251 Ks~~lRs~ym~~Ll~LIetL~~sp---l~eLS--~~dL~ea~~~L~dL~~agf----KvdWL~~KLeEV~Eare~~~~~~ 321 (403)
.-..+...|+++.-.+|+.....- +++|. +.+|.+..+.|.+.-.-|- .-+=|+..|.-|.... .
T Consensus 40 ~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~l------e 113 (660)
T KOG4302|consen 40 KLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYL------E 113 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHH------H
Confidence 345556666666666666655443 23322 3455555555555554444 1122222222222222 1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------HHhHHHHHHHHHHHHHhh-hhHHH
Q 015660 322 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL---------------KESVAKTKARLSDLELES-NRLEQ 381 (403)
Q Consensus 322 ~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~---------------~~rv~e~k~RL~~LE~es-s~l~~ 381 (403)
.+- ..-.++++|+.+++..+.+.+.+++.- -+++.+++++|.+|+.+. .|+++
T Consensus 114 ~lr-------~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 114 GLR-------KQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122233344444444444444444331 267889999999999554 45544
No 260
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=37.50 E-value=42 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 015660 265 SVVQELQSTSLMQMTKAKVKEMMAVLKDVES 295 (403)
Q Consensus 265 ~LIetL~~spl~eLS~~dL~ea~~~L~dL~~ 295 (403)
-||+.|.+.+ .+||++|+.-|..++.|++.
T Consensus 42 rIv~IL~K~k-~dltddD~~hMrkVV~yv~r 71 (92)
T PF11338_consen 42 RIVEILRKRK-TDLTDDDYEHMRKVVGYVKR 71 (92)
T ss_pred HHHHHHhcCc-ccCCHHHHHHHHHHHHHHHH
Confidence 3778888999 99999999999999999874
No 261
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.44 E-value=2.1e+02 Score=26.67 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 308 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 354 (403)
Q Consensus 308 eEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~keke 354 (403)
+++..+.+.+..|+....+-...+..+..+...+...+..|...+++
T Consensus 12 ~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~ 58 (188)
T PF10018_consen 12 DELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKE 58 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555533333333333333333333333333333333
No 262
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.17 E-value=4.4e+02 Score=26.70 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=51.7
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh----------------hhhhhhHHHHHHhhHHHHHHH
Q 015660 274 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF----------------STQHQTIDAAKANCVNLLEST 337 (403)
Q Consensus 274 pl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~----------------~~~~~~~e~~K~~~d~~~e~~ 337 (403)
||..|.+.||.++.-..+-|...-.+.|..++|+......-.. ..+...++++-+.....++.-
T Consensus 111 PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~ 190 (257)
T cd07620 111 PLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQC 190 (257)
T ss_pred HHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 5689999999999999999988877777788888543211000 000112233323333455555
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 015660 338 KKELESQMNELALKEKEVAG 357 (403)
Q Consensus 338 ~~ELEe~leeL~~kekev~d 357 (403)
+..++..+-.|..+|-+...
T Consensus 191 kd~~~a~Mynfl~kE~e~a~ 210 (257)
T cd07620 191 KDQYSADLYHFATKEDSYAN 210 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 66666666666666666555
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.07 E-value=3.1e+02 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
-+++..++..+..+.....+.--+|-.+++=+
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45777777777777766666555555554433
No 264
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=37.07 E-value=2.9e+02 Score=28.11 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=33.3
Q ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 015660 241 YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 279 (403)
Q Consensus 241 HpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS 279 (403)
-|+.-.+|++-+-.++.+-...+..+|+.+|-+. +.|.
T Consensus 56 ~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~-~~Lr 93 (264)
T PF07246_consen 56 MPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSI-SNLR 93 (264)
T ss_pred CCccccCcccCCcchhhcchhhHHHHHHHHhccc-ccce
Confidence 5566689999999999999999999999999887 6665
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.97 E-value=3.9e+02 Score=25.73 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHhh
Q 015660 318 TQHQTIDAAKANC 330 (403)
Q Consensus 318 ~~~~~~e~~K~~~ 330 (403)
..+..+..+.++.
T Consensus 56 ~e~~~l~~e~e~L 68 (251)
T PF11932_consen 56 AEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 266
>PLN02320 seryl-tRNA synthetase
Probab=36.87 E-value=2.4e+02 Score=30.95 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHh
Q 015660 361 SVAKTKARLSDLELE 375 (403)
Q Consensus 361 rv~e~k~RL~~LE~e 375 (403)
++.++.+.|.+++.+
T Consensus 145 ~i~~le~~~~~~~~~ 159 (502)
T PLN02320 145 GLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 267
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.72 E-value=2.7e+02 Score=23.74 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 015660 361 SVAKTKARL 369 (403)
Q Consensus 361 rv~e~k~RL 369 (403)
++.++..+|
T Consensus 96 ~l~e~q~~l 104 (110)
T TIGR02338 96 QLKELQEKI 104 (110)
T ss_pred HHHHHHHHH
Confidence 444444433
No 268
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.68 E-value=2e+02 Score=28.84 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH----HHHHHHHHhhhhHHH
Q 015660 314 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK----ARLSDLELESNRLEQ 381 (403)
Q Consensus 314 re~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k----~RL~~LE~ess~l~~ 381 (403)
..+...+++.+++..+..+.+ .+.+++....+.+.++..|+.+...++..-+ .-...+|.+...|.+
T Consensus 33 ~~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 33 VMLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 334445555555555544444 4555565555666666666666655555555 334444444444443
No 269
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.66 E-value=1.8e+02 Score=22.89 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-HhHHHHHHHHHHHHHhhhhHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLK-ESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~-~rv~e~k~RL~~LE~ess~l~~ 381 (403)
.+......|++-.+-|.+.+-|+..+- ..-..+..+|..+..+..+|.+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544455666666665552 2224555555555555555443
No 270
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.39 E-value=3.3e+02 Score=33.25 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
.+.+++.++++++.+...+...+..+......|....++++
T Consensus 516 ~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 33444444444433333333333333333333333333443
No 271
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=36.36 E-value=1.3e+02 Score=31.64 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=7.3
Q ss_pred HhhhHHhHHHHHHHHHH
Q 015660 355 VAGLKESVAKTKARLSD 371 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~ 371 (403)
+.+++++++++.++|..
T Consensus 85 i~~~~~~~~~le~~L~~ 101 (363)
T COG0216 85 IKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 272
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.29 E-value=4.4e+02 Score=30.47 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=66.3
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Q 015660 283 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-----EKEVA 356 (403)
Q Consensus 283 L~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear-e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~k-----ekev~ 356 (403)
...|..++.--+.|--.+.-|++.|+.+...+ -+=++..-++.+=..|.+.++..+.|-|..+.+...+ ++.-.
T Consensus 9 ~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 9 AKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567777788888888888999999887555 2233456666776667677777776666665544332 22233
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
++..++.+...+|..+..+.+.|...+
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 556677777777777777777665533
No 273
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=36.23 E-value=6.7e+02 Score=28.20 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 015660 252 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 317 (403)
Q Consensus 252 s~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~ 317 (403)
|..+|...|-+||. -.+|..+|..++|..+|.+|+..|..=-.--.-.|| +-++|...-..|+
T Consensus 456 n~~~R~slmi~ll~-~d~~~~P~~~d~s~eel~~a~~llk~e~~~l~~dd~--q~~~ec~s~~~~l 518 (617)
T KOG0050|consen 456 NDAPRVSLMIVLLA-YDTLNYPPFKDFSQEELDNAYDLLKQEAEELVSDDY--QFLKECLSRMQYL 518 (617)
T ss_pred hhhhhhHHHHHHHH-hcccCCCCCCCCCHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHH
Confidence 46677777666554 478889999999999999999998764444444577 7777777777666
No 274
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=35.98 E-value=2.6e+02 Score=26.41 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=7.5
Q ss_pred hhhhhhHHHHHH
Q 015660 300 VDWLRNILNEIS 311 (403)
Q Consensus 300 vdWL~~KLeEV~ 311 (403)
|.|+|+|++-|-
T Consensus 86 v~~vRkkID~vN 97 (159)
T PF04949_consen 86 VEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 275
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.27 E-value=2.8e+02 Score=26.98 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
-|++-.++|.++| .+.+.++++.++++.+..+++||.++....
T Consensus 104 ~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 104 YVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555543 344566677777777777777777765443
No 276
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.96 E-value=3.4e+02 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
+.++......+|+..+++.+.....|++....|.++-++...+
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444443333
No 277
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.95 E-value=3e+02 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=32.8
Q ss_pred cccccCcccchhHHHHHHHHHHHHHH-HH-hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 015660 243 DIAANCNLESNSMRAYYLECLCSVVQ-EL-QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 304 (403)
Q Consensus 243 DIAsnf~lKs~~lRs~ym~~Ll~LIe-tL-~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~ 304 (403)
++|.-+.+.-..+| +|-. .+||. .- ..+.-+-.+.+++..+. .+..|+..||.++=.+
T Consensus 4 e~a~~~gvs~~tlR-~Ye~--~GLl~~~~r~~~g~R~Y~~~~l~~l~-~I~~l~~~G~sl~eI~ 63 (124)
T TIGR02051 4 ELAKAAGVNVETIR-YYER--KGLLPEPDRPEGGYRRYPEETVKRLR-FIKRAQELGFSLEEIG 63 (124)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCEeECHHHHHHHH-HHHHHHHCCCCHHHHH
Confidence 44555555555554 3422 23332 11 12334667888888774 7777999999865333
No 278
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.77 E-value=6.4e+02 Score=27.55 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 015660 259 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 314 (403)
Q Consensus 259 ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW--L~~KLeEV~Ear 314 (403)
+|+-|=.|+.+|. .-=.+.|.+.......|+..||.+.= +...|..+.+..
T Consensus 209 ~~e~IP~l~~~l~-----~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 209 IMEDIPKLYKELQ-----KEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHHHhHHHHHHHH-----HHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444444443 23347788888888999999998886 555665555444
No 279
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.72 E-value=5.7e+02 Score=27.85 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhH------------HHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 339 KELESQMNELALKEKEVAGLKESV------------AKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 339 ~ELEe~leeL~~kekev~d~~~rv------------~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
+++|+..++|.+.+.+......++ .+.-.+|..|-++...|+++..++++++
T Consensus 176 kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqI 239 (446)
T KOG4438|consen 176 KQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQI 239 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555543322222 2235678888888888888888888865
No 280
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.59 E-value=3.4e+02 Score=24.30 Aligned_cols=25 Identities=0% Similarity=0.242 Sum_probs=17.4
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
+-.+.++|..+. .+..+++.||-|+
T Consensus 36 R~Y~~~~l~~l~-~I~~lr~~G~sL~ 60 (134)
T cd04779 36 RYYDETALDRLQ-LIEHLKGQRLSLA 60 (134)
T ss_pred eeECHHHHHHHH-HHHHHHHCCCCHH
Confidence 456677766554 4466788999887
No 281
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.58 E-value=1.5e+02 Score=25.33 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=36.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID-AAKANCVNLLESTKKELESQMNELALKEKE 354 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e-~~K~~~d~~~e~~~~ELEe~leeL~~keke 354 (403)
+-.+.+|+..+ ..+..|++.||.+.=++.-|.. +...+ ..-+.....++...+++++++++|......
T Consensus 36 R~Y~~~d~~~l-~~I~~lr~~G~sl~eI~~~l~~----------~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (116)
T cd04769 36 RVYDAQHVECL-RFIKEARQLGFTLAELKAIFAG----------HEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLAR 104 (116)
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHHHHhc----------cccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777654 4566678899986543333321 11110 000111234555555666655555555555
Q ss_pred Hhhh
Q 015660 355 VAGL 358 (403)
Q Consensus 355 v~d~ 358 (403)
+...
T Consensus 105 l~~~ 108 (116)
T cd04769 105 LDAF 108 (116)
T ss_pred HHHH
Confidence 5443
No 282
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=34.54 E-value=85 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.317 Sum_probs=20.6
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
|..++.|++++.++|.+|+.-.+.-.+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999877776543
No 283
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=34.22 E-value=3.1e+02 Score=29.03 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHh
Q 015660 303 LRNILNEISEAIEF 316 (403)
Q Consensus 303 L~~KLeEV~Eare~ 316 (403)
+++.++++..++++
T Consensus 55 ~~~~~~~l~~a~~~ 68 (363)
T COG0216 55 YKKAQEDLEDAKEM 68 (363)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 284
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=34.18 E-value=2.1e+02 Score=32.42 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 015660 280 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV---- 355 (403)
Q Consensus 280 ~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev---- 355 (403)
++.|-++-++|.-+++ =|-.|.+|+.-...++. ..++..|.... .|+.+.+|+|++|+.++++..+.
T Consensus 310 NsqLLetKNALNiVKN------DLIakVDeL~~E~~vLr--gElea~kqak~-Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 310 NSQLLETKNALNIVKN------DLIAKVDELTCEKDVLR--GELEAVKQAKL-KLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred hHHHHhhhhHHHHHHH------HHHHHHHhhccHHHHHh--hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666665552 24455666654443332 22222222221 45555566666655554432221
Q ss_pred -hhhHHhH-HHHHHHHHHHHHhhhhH
Q 015660 356 -AGLKESV-AKTKARLSDLELESNRL 379 (403)
Q Consensus 356 -~d~~~rv-~e~k~RL~~LE~ess~l 379 (403)
++....| ++++.|..+.||-+-=+
T Consensus 381 ~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 381 KDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred cccccccccHHHHhhhHHHHHHHHHH
Confidence 1111233 56777777777655433
No 285
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=33.97 E-value=2e+02 Score=27.49 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 015660 254 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 296 (403)
Q Consensus 254 ~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~a 296 (403)
.--..||.-|++++-+|...-+..++..|+..+...+..|++.
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~l 151 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEI 151 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3456899999999999999999999999998888887777753
No 286
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.94 E-value=19 Score=32.03 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS 370 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~ 370 (403)
..+..+.+++++..+.+.++..++...+.|...-+.++.
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~ 56 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAK 56 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655444433
No 287
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=33.85 E-value=1.7e+02 Score=27.02 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=13.1
Q ss_pred chhhhhhHHHHHHHHHHhhhhhh
Q 015660 299 DVDWLRNILNEISEAIEFSTQHQ 321 (403)
Q Consensus 299 KvdWL~~KLeEV~Eare~~~~~~ 321 (403)
||+||+.-+.-+-....-+--||
T Consensus 105 ki~~i~~L~~NmhhllNeyRPhQ 127 (162)
T PF05983_consen 105 KIEDIRLLFINMHHLLNEYRPHQ 127 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHH
Confidence 67777777766554443333333
No 288
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.80 E-value=2.8e+02 Score=23.19 Aligned_cols=26 Identities=0% Similarity=-0.027 Sum_probs=20.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDW 302 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdW 302 (403)
+..++.++ +....+..|++.||-|+=
T Consensus 35 r~Y~~~~~-~~l~~I~~lr~~G~sL~e 60 (107)
T cd04777 35 YFFDEKCQ-DDLEFILELKGLGFSLIE 60 (107)
T ss_pred cccCHHHH-HHHHHHHHHHHCCCCHHH
Confidence 56778888 677888999999998653
No 289
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=33.75 E-value=46 Score=26.69 Aligned_cols=30 Identities=47% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 353 KEVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 353 kev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
+||.-+|++|.+..+|..+||.+.+-|.+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556778888888999999888887553
No 290
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.64 E-value=2.1e+02 Score=31.70 Aligned_cols=20 Identities=40% Similarity=0.250 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHhhhhH
Q 015660 360 ESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l 379 (403)
...+.|+.||..+|+.....
T Consensus 486 ~~~~km~qr~~~le~~~~~~ 505 (536)
T KOG0500|consen 486 SSQQKMKQRLSVLEKQLKPG 505 (536)
T ss_pred hhhHHHHHHHHHHHHHhhhh
Confidence 35677777777777765554
No 291
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=33.62 E-value=29 Score=37.68 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=31.2
Q ss_pred cccccccceeEeccEEeeccchHHHHHHHhhcccccccCccc
Q 015660 210 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLE 251 (403)
Q Consensus 210 E~~Sv~~etv~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lK 251 (403)
.+....+|-+.++||||-|..+ ..++-.||+|.--|-+-
T Consensus 425 ~IvdR~KdlIk~~G~qv~P~Ei---E~vL~~hP~V~eaaVvg 463 (537)
T KOG1176|consen 425 YIVDRSKDLIKYGGEQVSPAEI---EAVLLTHPDVLEAAVVG 463 (537)
T ss_pred EEecchhhheeeCCEEeCHHHH---HHHHHhCCCccEEEEEc
Confidence 6777778889999999999885 56799999987655443
No 292
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=33.58 E-value=1.4e+02 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 369 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL 369 (403)
.++...+.|+..+..+.+.+..|+++.+++.++++.|
T Consensus 122 kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 122 KLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555544444444433
No 293
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=33.58 E-value=5.3e+02 Score=26.19 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=57.6
Q ss_pred HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCc----chhhhhhHHHHH
Q 015660 235 QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI----DVDWLRNILNEI 310 (403)
Q Consensus 235 ~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agf----KvdWL~~KLeEV 310 (403)
++|=-..++...+|....+.-=+.|-+-+|.=|....... ...-|.+....+.++.-..| +-.||.+-+..+
T Consensus 7 ~~id~~~~~~i~~~G~~~~~~~a~~s~~iL~~v~~~d~~~----vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~ 82 (333)
T PF05816_consen 7 KQIDLTNPDAILSFGAEAQEKIAQFSDRILDRVRNKDSGE----VGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKA 82 (333)
T ss_pred hhhCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhh
Confidence 3333344444455555555555666666666565553333 23344444455544443333 235555533323
Q ss_pred H-HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 311 S-EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 353 (403)
Q Consensus 311 ~-Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kek 353 (403)
. -..+|+.+|+.+...=+.+-..++..+.+|......|.+...
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~ 126 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYE 126 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 334667778887776555544555555555554444444333
No 294
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.52 E-value=4e+02 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.+...+..+......+..++..|.+|+.+..++....
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555556666666655555554433
No 295
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=33.41 E-value=16 Score=26.51 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.3
Q ss_pred hHHHHHHHhhcccccccCcc
Q 015660 231 SSILQSIISRYGDIAANCNL 250 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l 250 (403)
-..+..|.++||||+..+.-
T Consensus 16 ~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 16 QSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHhChhHHHHHHh
Confidence 46889999999999976543
No 296
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.31 E-value=4.5e+02 Score=25.34 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 360 ESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
..|.++..+|.+...+..++.+.|
T Consensus 135 ~~i~eaE~~l~~a~~d~~r~s~~l 158 (211)
T cd07598 135 QIISQAESELQKASVDANRSTKEL 158 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888765544
No 297
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.24 E-value=4.9e+02 Score=29.53 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhH
Q 015660 359 KESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l 379 (403)
+.+...+.++|..|+.....|
T Consensus 188 ~~~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555444
No 298
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.11 E-value=2.7e+02 Score=22.65 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=15.4
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
|+.+|..+.+....+..|.....++.+-+..++.++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444433
No 299
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=33.10 E-value=73 Score=26.31 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=33.3
Q ss_pred hHHHHHHHhhcccccccCccc---------chhHH---HHHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCNLE---------SNSMR---AYYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lK---------s~~lR---s~ym~~Ll~LIetL~~sp 274 (403)
..+..++|++||++-.-|..- ++.++ ..++++|-.+|..|....
T Consensus 24 ~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~ 79 (140)
T cd01040 24 LEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLE 79 (140)
T ss_pred HHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccChH
Confidence 467889999999998888653 45555 478888888888876554
No 300
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=33.04 E-value=5.8e+02 Score=26.52 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=31.1
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
+.....+-..+.+||.+|+-+..=|.|-+.++..|++.
T Consensus 209 v~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 209 VNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456778999999999999999999999999863
No 301
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.00 E-value=2.8e+02 Score=24.73 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 015660 308 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 367 (403)
Q Consensus 308 eEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~ 367 (403)
+||.......+........-......+..+....+..|+=|.+|..++.+++..|.++|+
T Consensus 51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
No 302
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=32.99 E-value=1.9e+02 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNI 306 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~K 306 (403)
+..+.+++..+.-+ ..+++.||.|+=.+.-
T Consensus 37 R~Y~~~~v~~l~~I-~~lr~~GfsL~eI~~l 66 (131)
T cd04786 37 RDYPPETVWVLEII-SSAQQAGFSLDEIRQL 66 (131)
T ss_pred eecCHHHHHHHHHH-HHHHHcCCCHHHHHHH
Confidence 45677777766554 4489999986644443
No 303
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=32.96 E-value=89 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015660 341 LESQMNELALKEKEV 355 (403)
Q Consensus 341 LEe~leeL~~kekev 355 (403)
|.+++.+|..|++..
T Consensus 24 id~qIaeLe~KR~~L 38 (46)
T PF08946_consen 24 IDEQIAELEAKRQRL 38 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554443
No 304
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=32.94 E-value=4.3e+02 Score=29.89 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 015660 280 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 318 (403)
Q Consensus 280 ~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~ 318 (403)
.++--....++.-.++..+=+.||.+-++-+.-.+++-+
T Consensus 175 ~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~ 213 (775)
T TIGR00763 175 KDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITK 213 (775)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445677666665555555433
No 305
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.85 E-value=3.7e+02 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
+....+++++....+++++.+..+++.+
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333334445555555555443
No 306
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=32.82 E-value=6.7e+02 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.3
Q ss_pred cchhhhhhHHHHH
Q 015660 298 IDVDWLRNILNEI 310 (403)
Q Consensus 298 fKvdWL~~KLeEV 310 (403)
|+-.-|+..|++.
T Consensus 306 yR~erLEEqLNdl 318 (455)
T KOG3850|consen 306 YRYERLEEQLNDL 318 (455)
T ss_pred HHHHHHHHHHhHH
Confidence 3444444444433
No 307
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=2.7e+02 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
.+|.+..+++.+ ||.+|.+.|++. +++.+....+
T Consensus 115 ~~l~~lk~q~q~---ri~q~~~qlge~-~esk~~~~Al 148 (168)
T KOG3192|consen 115 EDLKQLKSQNQE---RIAQCKQQLGEA-FESKKYDEAL 148 (168)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH-HhhccHHHHH
Confidence 345555555555 888888888875 3444444333
No 308
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.50 E-value=6.2e+02 Score=28.01 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=45.2
Q ss_pred eEeccEEeeccchHHHH--HHHhhcccccccCcccchhHHHHHHHH------HHHHHHHHhcchhhhccHHHHHHHHHHH
Q 015660 219 VSVGKYHVRASISSILQ--SIISRYGDIAANCNLESNSMRAYYLEC------LCSVVQELQSTSLMQMTKAKVKEMMAVL 290 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~--~IFeKHpDIAsnf~lKs~~lRs~ym~~------Ll~LIetL~~spl~eLS~~dL~ea~~~L 290 (403)
|.+.|-.+. ..+..|. -|.-.+|++--+|...+...----+.. |=.++..|.++. ..-...+
T Consensus 264 v~~e~~e~p-~~~s~wspagis~~~~a~~e~c~~~d~eqs~EslqpleedmaLNEvL~kLk~tn---------~kQq~~I 333 (527)
T PF15066_consen 264 VTVEGVESP-EIASTWSPAGISWSSGASQEDCKTPDTEQSFESLQPLEEDMALNEVLQKLKHTN---------RKQQNRI 333 (527)
T ss_pred cchhcccCc-ccccCCCCCcccccccchhhhccCCCHHhhhhccCCcHHHHHHHHHHHHHHhhh---------HHHHHHH
Confidence 666666654 5566666 677788888888888765433211111 113333333333 2223344
Q ss_pred hHHHhcCcchhhhhhHHHHHHHH
Q 015660 291 KDVESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 291 ~dL~~agfKvdWL~~KLeEV~Ea 313 (403)
.||.-.+ -+|++|.+|+.-.
T Consensus 334 qdLq~sN---~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 334 QDLQCSN---LYLEKKVKELQMK 353 (527)
T ss_pred HHhhhcc---HHHHHHHHHHHHH
Confidence 4555444 5777777777543
No 309
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=32.49 E-value=6.8e+02 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=7.5
Q ss_pred HHhcCcchhhhhhHH
Q 015660 293 VESAQIDVDWLRNIL 307 (403)
Q Consensus 293 L~~agfKvdWL~~KL 307 (403)
|+.+.=+|.||+..|
T Consensus 220 leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 220 LEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555544
No 310
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.33 E-value=9e+02 Score=28.53 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=8.1
Q ss_pred hhccHHHHHHHHHHHhHH
Q 015660 276 MQMTKAKVKEMMAVLKDV 293 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL 293 (403)
..+|++++..+...+..+
T Consensus 211 ~~ls~e~~~~l~~~~~~l 228 (1047)
T PRK10246 211 ALLTPEQVQSLTASLQVL 228 (1047)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 344555554444444333
No 311
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.19 E-value=1.7e+02 Score=24.12 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 015660 300 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 361 (403)
Q Consensus 300 vdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~r 361 (403)
++-|+.||.....+.+-+. -.++-+++..++|+..-+.+..|..-+.+++++
T Consensus 30 ~~~lk~Klq~ar~~i~~lp----------gi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 30 TGSLKHKLQKARAAIRELP----------GIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHhCC----------CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788887776663211 133455555555555544555555555554444
No 312
>PLN02678 seryl-tRNA synthetase
Probab=32.15 E-value=4.5e+02 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
+++.+++++.++...|.+++.+...+
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554443
No 313
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.10 E-value=9.8e+02 Score=28.88 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=38.6
Q ss_pred eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..|||+.|..|.++.+-.=|...=|=---|.++-..-==+=|. =|+.|-.+- ..+..++|-..+..|.+|.
T Consensus 117 y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~----pi~LL~eTe-kAig~~~ll~~h~eL~~lr 187 (1072)
T KOG0979|consen 117 YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLS----PIELLVETE-KAIGAEELLQYHIELMDLR 187 (1072)
T ss_pred eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCC----hHHHHHHHH-HhcCchhhHHHHHHHHHHH
Confidence 8899999999887776666655444333344432221111111 122222222 5566666666666666654
No 314
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.01 E-value=6.7e+02 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=25.3
Q ss_pred eEeccEEeeccchHHHHHHHhhcccccccCcccch
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESN 253 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~ 253 (403)
..+.-|++.-.....+..+..-+|++.....-.+.
T Consensus 210 ~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~ 244 (582)
T PF09731_consen 210 KIVEEYKELVEEEPEVQELVSIFNDLIESINEGNL 244 (582)
T ss_pred hhhhhhhhhhhhhhhHHHHHHhccchhhhhccccc
Confidence 44566777777777788888889999766655444
No 315
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.38 E-value=5.5e+02 Score=25.77 Aligned_cols=67 Identities=10% Similarity=0.196 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-HHH---HHHHHHHHH
Q 015660 301 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV-AKT---KARLSDLEL 374 (403)
Q Consensus 301 dWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv-~e~---k~RL~~LE~ 374 (403)
+-|-.|=+|+.+..++.-.++ ..+..|..++.++|..=+++.|.++..+++.--+ ++| +.+|..++.
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~-------k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQ-------KREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665555433222 2335666677777776667777777766653222 222 555555543
No 316
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=31.36 E-value=6.7e+02 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=40.1
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660 266 VVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 266 LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare 315 (403)
.+++++..- .+.+..=+..+=.++.|+..+.-++.-|+.++..|.+..+
T Consensus 46 ~~qe~~~~l-e~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~ 94 (766)
T PF10191_consen 46 YSQEVNASL-EETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIK 94 (766)
T ss_pred HHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555554 7777888888889999999999999999999999998764
No 317
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=31.27 E-value=2.2e+02 Score=23.60 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.8
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-+-.+.+|+..+.. +..|++.||.|+
T Consensus 36 yR~Y~~~~~~~l~~-I~~lr~~G~~l~ 61 (97)
T cd04782 36 YRYYTLEQFEQLDI-ILLLKELGISLK 61 (97)
T ss_pred CccCCHHHHHHHHH-HHHHHHcCCCHH
Confidence 36778888877766 456999999874
No 318
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=94 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++.++..++.++++++-++..+...+.++..-=+-+..+|....|+.+||
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlL 93 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555666666666666666666665666666666666665554
No 319
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.20 E-value=3.3e+02 Score=23.09 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 380 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~ 380 (403)
+.+..+...+.-.++..+++.+...+..++.+...++.....+.
T Consensus 65 A~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 65 AEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555556666666666666666665555555443
No 320
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=31.03 E-value=3.8e+02 Score=24.17 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=32.1
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH-h-cchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 015660 242 GDIAANCNLESNSMRAYYLECLCSVVQEL-Q-STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 304 (403)
Q Consensus 242 pDIAsnf~lKs~~lRs~ym~~Ll~LIetL-~-~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~ 304 (403)
+++|.-+.+.-..+| +|-. .+||.-- . .+--+..+.++|..+.- +..++.+||-|+=++
T Consensus 11 gevAk~~Gvs~~TLR-yYE~--~GLl~p~~r~~~gyR~Y~~~~l~rl~~-I~~lr~~G~sL~eI~ 71 (144)
T PRK13752 11 GVFAKAAGVNVETIR-FYQR--KGLLPEPDKPYGSIRRYGEADVTRVRF-VKSAQRLGFSLDEIA 71 (144)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCeecCHHHHHHHHH-HHHHHHcCCCHHHHH
Confidence 344444555444444 3433 2444311 1 22246788888877654 555889999875443
No 321
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.00 E-value=5.7e+02 Score=25.83 Aligned_cols=16 Identities=19% Similarity=-0.020 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhcch
Q 015660 259 YLECLCSVVQELQSTS 274 (403)
Q Consensus 259 ym~~Ll~LIetL~~sp 274 (403)
-|.=|+.--..|.+++
T Consensus 7 sl~el~~h~~~L~~~N 22 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLN 22 (258)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444433
No 322
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.66 E-value=1.8e+02 Score=28.48 Aligned_cols=20 Identities=0% Similarity=-0.024 Sum_probs=13.8
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 015660 251 ESNSMRAYYLECLCSVVQEL 270 (403)
Q Consensus 251 Ks~~lRs~ym~~Ll~LIetL 270 (403)
.++++-=..+-+|.+++-++
T Consensus 44 ~~p~lvilV~avi~gl~~~i 63 (201)
T COG1422 44 LPPHLVILVAAVITGLYITI 63 (201)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 66777667777777776655
No 323
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.65 E-value=4.8e+02 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=20.7
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.|....+....+|.+||.++... +|+.+-.|
T Consensus 186 ~~~~~~~~~~~~~Q~lEe~Ri~~------lk~~l~~~ 216 (236)
T cd07651 186 IWNREWKAALDDFQDLEEERIQF------LKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 45666777788888888776554 55555554
No 324
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=7.8e+02 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.4
Q ss_pred HhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 015660 270 LQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 309 (403)
Q Consensus 270 L~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeE 309 (403)
|..-..++..+.+..+|.+.|.-+ +.||..+|++
T Consensus 646 l~d~~~~e~~k~~re~a~N~LE~~------l~e~q~~l~d 679 (902)
T KOG0104|consen 646 LEDFVQKEKEKSEREEASNELEAF------LFELQDKLDD 679 (902)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHhcC
Confidence 333444778888888888888776 4999999998
No 325
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.47 E-value=3.3e+02 Score=22.85 Aligned_cols=26 Identities=0% Similarity=0.318 Sum_probs=21.2
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-+-.++++|..+. .+..+.+.||-+.
T Consensus 36 ~R~Y~~~~l~~l~-~I~~l~~~G~~l~ 61 (102)
T cd04789 36 YRLYPDSDLQRLL-LIQQLQAGGLSLK 61 (102)
T ss_pred CeeCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4778888998666 7888999999885
No 326
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.43 E-value=7.8e+02 Score=27.21 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ea 313 (403)
..-++.-+..|...|..|..|--.|.=|.++|+...+.
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578889999999999988888888888888877655
No 327
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.30 E-value=1.5e+02 Score=34.46 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~kS 388 (403)
+.++.-+.+|.+++.+..+|.+.|..++.
T Consensus 964 ~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 964 DVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677799999999999999998888773
No 328
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.27 E-value=7.2e+02 Score=27.12 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=48.4
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcch--hh---hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 015660 248 CNLESNSMRAYYLECLCSVVQELQSTS--LM---QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 318 (403)
Q Consensus 248 f~lKs~~lRs~ym~~Ll~LIetL~~sp--l~---eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~ 318 (403)
.+-++..+.+-|++.|--+|.+|...- |+ --|-+.|.++...++|+- .=.++.+.++.+..+++.
T Consensus 206 ~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l------~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 206 MKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLL------QKEKSAMVELQEKAKILE 275 (446)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356688889999999999999998654 11 236678888877777764 447788888888777765
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.24 E-value=4.2e+02 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=9.8
Q ss_pred hhHHhHHHHHHHHHHHHHhhhh
Q 015660 357 GLKESVAKTKARLSDLELESNR 378 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~ 378 (403)
++..++++++++|..|+.+...
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433
No 330
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.19 E-value=2.9e+02 Score=24.39 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=3.7
Q ss_pred HHHHHhhhhH
Q 015660 370 SDLELESNRL 379 (403)
Q Consensus 370 ~~LE~ess~l 379 (403)
++|.+|...|
T Consensus 39 ~~L~iEN~~L 48 (110)
T PRK13169 39 TALRLENDKL 48 (110)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 331
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=30.18 E-value=4.5e+02 Score=25.82 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.6
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 274 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 274 pl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
|++.+-+.|+.++....+-|+..-+.+|-.+.|+.
T Consensus 123 pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~ 157 (229)
T cd07594 123 PLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666667777777777777777777777777775
No 332
>PLN02939 transferase, transferring glycosyl groups
Probab=30.05 E-value=8.3e+02 Score=29.22 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH------------hhhhhhhHHHHHHhhHHHHHHHHHHH---H
Q 015660 278 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE------------FSTQHQTIDAAKANCVNLLESTKKEL---E 342 (403)
Q Consensus 278 LS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare------------~~~~~~~~e~~K~~~d~~~e~~~~EL---E 342 (403)
+=+-.|++....++.-...++.++-|+..|+.+....- +......++++--.....++.++.+| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (977)
T PLN02939 174 ILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA 253 (977)
T ss_pred HHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888899999999888876653221 11112223332111222333333333 2
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH-HHHHhhhhhhhc
Q 015660 343 SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ-IIQATQSKVTKF 393 (403)
Q Consensus 343 e~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~-~~~~~kSKV~kf 393 (403)
+.-+-+...++|-.-+.+-+.++..||...+...++|+- .+.+++-||+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 254 ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 222334444555444444555555555555554444422 123455555544
No 333
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.97 E-value=2.2e+02 Score=27.45 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=11.1
Q ss_pred hHHHHHHHhhcccccccCc
Q 015660 231 SSILQSIISRYGDIAANCN 249 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~ 249 (403)
...++.+..+||-...+..
T Consensus 65 ~~~i~~~~~~~gG~i~~~~ 83 (262)
T PF14257_consen 65 VKKIENLVESYGGYIESSS 83 (262)
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 4556667777765544444
No 334
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.92 E-value=2.4e+02 Score=29.77 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKT 365 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~ 365 (403)
..+....+||+.+.+.|.|....++....-+..|
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3777788899999988888877766644444444
No 335
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.78 E-value=5.9e+02 Score=25.64 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 015660 330 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 372 (403)
Q Consensus 330 ~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~L 372 (403)
++..+....+|+|-+...+..+..|+.+.++-|..-++-|...
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka 133 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4456667777888887777777777777776666655544333
No 336
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=29.74 E-value=4e+02 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=17.8
Q ss_pred ccCcccchhHHHHHHHHHH---HHHHHHhcch
Q 015660 246 ANCNLESNSMRAYYLECLC---SVVQELQSTS 274 (403)
Q Consensus 246 snf~lKs~~lRs~ym~~Ll---~LIetL~~sp 274 (403)
.|+..| ..||..-+..|+ .|+..|-..|
T Consensus 71 ~~~d~K-~ELRkLnrslllnfleL~~ILi~~P 101 (223)
T KOG0570|consen 71 NNYDYK-KELRKLNRSLLLNFLELLDILIRAP 101 (223)
T ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 555555 677776666655 4566666777
No 337
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.66 E-value=2.9e+02 Score=30.03 Aligned_cols=89 Identities=12% Similarity=0.240 Sum_probs=42.3
Q ss_pred chHHHHHHHhhcccccccCcccch-hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 230 ISSILQSIISRYGDIAANCNLESN-SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 230 qv~~v~~IFeKHpDIAsnf~lKs~-~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
+.++-..|-++|+|+..++.--.. ..| ...|..=|..+.+.-+.+-...+|.++...+..|+..=-...++-.-|+
T Consensus 27 k~eV~~~I~~~y~df~~~~~~~~~L~~~---~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 27 KEEVHSMINKKYSDFSPSLQSAKDLIER---SKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888899988876543322 222 1223333322222222344455666666665555543223333444444
Q ss_pred HHHHHHHhhhhhh
Q 015660 309 EISEAIEFSTQHQ 321 (403)
Q Consensus 309 EV~Eare~~~~~~ 321 (403)
.+.+.-+.++...
T Consensus 104 ~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 104 QLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 338
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.59 E-value=18 Score=39.58 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHH--HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHH
Q 015660 258 YYLECLCSVVQELQSTSLMQMTKAKVKEM--MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 335 (403)
Q Consensus 258 ~ym~~Ll~LIetL~~spl~eLS~~dL~ea--~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e 335 (403)
.+++.|+.++..|.-.|.....+.+|... ...-..|... .++||+..++++.+.+. .....+.
T Consensus 167 ~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~--~l~~L~~~~~~L~~~k~-------------~r~~~~~ 231 (619)
T PF03999_consen 167 ELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDE--NLEKLQELLQELEEEKE-------------EREEKLQ 231 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHH--HHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 45677788888888777213344444331 1112223222 35678777776655442 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccccch
Q 015660 336 STKKELESQMNELALKEKEVAGL--------KESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQKSL 398 (403)
Q Consensus 336 ~~~~ELEe~leeL~~kekev~d~--------~~rv~e~k~RL~~LE-~ess~l~~~~~~~kSKV~kf~~kSl 398 (403)
.+..+|...-.-|..-+.+...+ ..-|..++..|.+|+ ++...|...|..++.++..+-++.+
T Consensus 232 ~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~ 303 (619)
T PF03999_consen 232 ELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCH 303 (619)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 22222222222222222222111 234566677777777 6677777778888877777654433
No 339
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.47 E-value=2.7e+02 Score=24.34 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 015660 363 AKTKARLSDLE 373 (403)
Q Consensus 363 ~e~k~RL~~LE 373 (403)
...++||.+++
T Consensus 46 ~~Lr~~l~~~~ 56 (107)
T PF06156_consen 46 EHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 340
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.37 E-value=7.5e+02 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 015660 255 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 309 (403)
Q Consensus 255 lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeE 309 (403)
=|++|..-|+.||.-+++-- .++..+|.|-+..+=.+-||.-||+.
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk---------~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQK---------EEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888887766 45666777877777778888877763
No 341
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.29 E-value=4.8e+02 Score=24.40 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 384 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~ 384 (403)
++.+-+++-...+.+..-.++++..++.|--.||....+|..+|.
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555544444444443
No 342
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.03 E-value=3.8e+02 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=19.2
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-+..+.++|..+. .+..|++.||-|.
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sL~ 61 (126)
T cd04783 36 YRRYPEETVTRLR-FIKRAQELGFTLD 61 (126)
T ss_pred CeecCHHHHHHHH-HHHHHHHcCCCHH
Confidence 3667788887764 5667899999873
No 343
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.90 E-value=4.3e+02 Score=27.05 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAI 314 (403)
Q Consensus 300 vdWL~~KLeEV~Ear 314 (403)
.+||+.+|.++....
T Consensus 173 ~~fl~~ql~~~~~~l 187 (444)
T TIGR03017 173 ALWFVQQIAALREDL 187 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478888888877555
No 344
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.85 E-value=1e+03 Score=28.84 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 015660 342 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 342 Ee~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
...+....|..++..+++.+|..+..+|.+-..+-+++...+..+
T Consensus 470 ~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~el 514 (1195)
T KOG4643|consen 470 DQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNEL 514 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666667777777777777777666665544433
No 345
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.62 E-value=2.3e+02 Score=23.86 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHh
Q 015660 281 AKVKEMMAVLKDVES 295 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ 295 (403)
.++..+..+|..|..
T Consensus 30 ~e~~~~~~~l~~l~~ 44 (129)
T cd00890 30 TEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHhhc
Confidence 455556666666653
No 346
>PTZ00046 rifin; Provisional
Probab=28.51 E-value=1.5e+02 Score=31.15 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=46.4
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH-HHHHhhhhHHHHH-----------H
Q 015660 317 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS-DLELESNRLEQII-----------Q 384 (403)
Q Consensus 317 ~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~-~LE~ess~l~~~~-----------~ 384 (403)
+|-..+++..+++-++.--.+=+|-+|.+.+=+|++||-+|-.-|-==.|++|. +|..+.+.|+..| .
T Consensus 51 YDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~TdI~tddIPTCVCEK 130 (358)
T PTZ00046 51 YDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTDIQSDAIPTCVCEK 130 (358)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccCCccccCccccccc
Confidence 445555566667776666667778888888889999886663111111244442 3444555443333 2
Q ss_pred Hhhhhhhhc
Q 015660 385 ATQSKVTKF 393 (403)
Q Consensus 385 ~~kSKV~kf 393 (403)
++--||+|+
T Consensus 131 SlADKvEK~ 139 (358)
T PTZ00046 131 SLADKVEKG 139 (358)
T ss_pred hHHHHHHHH
Confidence 566688877
No 347
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.48 E-value=6.1e+02 Score=26.29 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHH-HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 298 IDVDWLRNILNEIS-EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 298 fKvdWL~~KLeEV~-Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
|-++-|..||..+- |...+-...+.++.+....+ +.-.+-|..=++.|...-.+|+.+.+.+....+...+.+.+.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E---ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE---EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHhhhhhhhc
Q 015660 377 NRLEQIIQATQSKVTKF 393 (403)
Q Consensus 377 s~l~~~~~~~kSKV~kf 393 (403)
+.|-..|.+++.|++.+
T Consensus 237 t~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHH
No 348
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=28.00 E-value=1.4e+03 Score=29.47 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660 283 VKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 283 L~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare 315 (403)
...-.+.-.-+..+..+++=|+.+|+|=.+++.
T Consensus 1314 ~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1314 TREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556667778888888888887774
No 349
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.77 E-value=4.6e+02 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 363 AKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
.+.++=|.++..-..+|++-|..-...|..|.
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888888888888888874
No 350
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.66 E-value=7e+02 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=5.9
Q ss_pred HhHHHHHHHHHHHH
Q 015660 360 ESVAKTKARLSDLE 373 (403)
Q Consensus 360 ~rv~e~k~RL~~LE 373 (403)
..+..|..-|..++
T Consensus 350 ~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 350 SQLKKWEELLNKVE 363 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 351
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.62 E-value=8e+02 Score=26.43 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 015660 368 RLSDLELE 375 (403)
Q Consensus 368 RL~~LE~e 375 (403)
||.+|+..
T Consensus 376 ~~~~l~~~ 383 (582)
T PF09731_consen 376 RLAKLAEL 383 (582)
T ss_pred HHHHHHHH
Confidence 44444433
No 352
>PLN02281 chlorophyllide a oxygenase
Probab=27.61 E-value=2e+02 Score=31.89 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=41.9
Q ss_pred hhhHHHHHH--HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 303 LRNILNEIS--EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 303 L~~KLeEV~--Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
|+.|..||+ .+|++ +-++++++||-...+||++.-.++---..|+.-.-.+|+++|.-
T Consensus 105 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T PLN02281 105 LHDKVVDVLNPLAREY---------------KSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEEL 164 (536)
T ss_pred HhHHHHHHhhhHHHhh---------------hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 566777766 34443 45677888888888888888888666667888888888887743
No 353
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=27.51 E-value=7.8e+02 Score=27.27 Aligned_cols=122 Identities=23% Similarity=0.298 Sum_probs=66.1
Q ss_pred cchHHHHHHHhhcccccccC---ccc-c-----hhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHHHHHhHHH
Q 015660 229 SISSILQSIISRYGDIAANC---NLE-S-----NSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 229 Sqv~~v~~IFeKHpDIAsnf---~lK-s-----~~lRs~ym~~Ll~LIetL~~sp-----l~eLS~~dL~ea~~~L~dL~ 294 (403)
-|..+|++|++-.-||...= .+. + ...+.--|+-|-..|++||++- |.++=.+|+.-|...|.
T Consensus 441 aqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~--- 517 (583)
T KOG3809|consen 441 AQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELE--- 517 (583)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHH---
Confidence 35789999999877764321 111 1 1122235888899999999875 22233333333333222
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 015660 295 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 295 ~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ 374 (403)
-|= .+.++ ..+.+..++....-.. |-....|++.+++|+|.++.|-+.++|+-+-|.
T Consensus 518 ------mWr-------se~rq---~~~elq~eq~~t~~a~-------epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~ 574 (583)
T KOG3809|consen 518 ------MWR-------SEQRQ---NEQELQNEQAATFGAS-------EPLYNILANLQKEINDTKEEISKARGRILNNEK 574 (583)
T ss_pred ------HHH-------HHHHH---hHHHHHhhhhcccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 121 01111 0111111222222222 334567888899999999999999888866554
Q ss_pred hh
Q 015660 375 ES 376 (403)
Q Consensus 375 es 376 (403)
..
T Consensus 575 rI 576 (583)
T KOG3809|consen 575 RI 576 (583)
T ss_pred HH
Confidence 43
No 354
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.47 E-value=3.2e+02 Score=23.01 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=37.8
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 354 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~keke 354 (403)
-+..+.+++..+ ..+..|+..||-|. +|..... .... +.....++...++|+.++.+|.+....
T Consensus 37 yR~Y~~~~i~~l-~~I~~lr~~G~sl~-------~i~~l~~---~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (108)
T cd01107 37 YRYYSAEQLERL-NRIKYLRDLGFPLE-------EIKEILD---ADND-----DELRKLLREKLAELEAEIEELQRILRL 100 (108)
T ss_pred ccccCHHHHHHH-HHHHHHHHcCCCHH-------HHHHHHh---cCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888877 47788888998664 3333222 1111 122234555555666665555555554
Q ss_pred Hhh
Q 015660 355 VAG 357 (403)
Q Consensus 355 v~d 357 (403)
+..
T Consensus 101 l~~ 103 (108)
T cd01107 101 LED 103 (108)
T ss_pred HHH
Confidence 444
No 355
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.34 E-value=1.9e+02 Score=29.92 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHH
Q 015660 361 SVAKTKARLSDLEL 374 (403)
Q Consensus 361 rv~e~k~RL~~LE~ 374 (403)
++..+.++|..||.
T Consensus 173 ~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 173 RIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444444
No 356
>PRK14149 heat shock protein GrpE; Provisional
Probab=27.25 E-value=99 Score=29.70 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTK 366 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k 366 (403)
++.+++++++....+.+...+....|.|...=+
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~ 77 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDK 77 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 357
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.25 E-value=3.9e+02 Score=29.28 Aligned_cols=6 Identities=0% Similarity=0.373 Sum_probs=3.2
Q ss_pred ccHHHH
Q 015660 278 MTKAKV 283 (403)
Q Consensus 278 LS~~dL 283 (403)
||-+++
T Consensus 42 ltpee~ 47 (472)
T TIGR03752 42 LSPEEL 47 (472)
T ss_pred CCcchh
Confidence 555554
No 358
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=27.19 E-value=9.3e+02 Score=27.99 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 330 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 330 ~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
....+....+++...+.-+..|+.+++++...+.+.+....+|+.........+...+.+.+
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe 292 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQE 292 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 33445556666666677788888889999889999999999998877766666665555544
No 359
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.12 E-value=3.5e+02 Score=22.11 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=4.3
Q ss_pred hHHhHHHHHHH
Q 015660 358 LKESVAKTKAR 368 (403)
Q Consensus 358 ~~~rv~e~k~R 368 (403)
|.+|+..+-+|
T Consensus 58 ~~~rl~~LL~k 68 (72)
T PF06005_consen 58 WQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33344444333
No 360
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=27.01 E-value=5.3e+02 Score=25.29 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 327 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 327 K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
|......+..+..++.....+...++.+...|+.++.+.+..+.....+
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555545555556666666666665555555444433
No 361
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.97 E-value=7e+02 Score=26.34 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=8.2
Q ss_pred CcchhhhhhHHHHHHHHH
Q 015660 297 QIDVDWLRNILNEISEAI 314 (403)
Q Consensus 297 gfKvdWL~~KLeEV~Ear 314 (403)
.++++=|+.+.++++..+
T Consensus 41 ~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 41 QTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 362
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.84 E-value=5.9e+02 Score=26.87 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=10.7
Q ss_pred hccHHHHHHHHHHHhHHHhcCcc
Q 015660 277 QMTKAKVKEMMAVLKDVESAQID 299 (403)
Q Consensus 277 eLS~~dL~ea~~~L~dL~~agfK 299 (403)
+-+.+...+.|.. .-|+..||+
T Consensus 288 eqTHtrhYElyRr-~kL~~Mgf~ 309 (406)
T KOG3859|consen 288 EQTHTRHYELYRR-CKLEEMGFK 309 (406)
T ss_pred hhccccchHHHHH-HHHHHcCCc
Confidence 3344445555543 235666663
No 363
>PLN02372 violaxanthin de-epoxidase
Probab=26.75 E-value=7.1e+02 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHH
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQ 384 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~ 384 (403)
.-.+-++-|.+|.|+.+++++.+.
T Consensus 426 lskee~~~l~~~~~~~~~vek~f~ 449 (455)
T PLN02372 426 LSKEEKELLEKLKMEASEVEKLFG 449 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445567777788887777664
No 364
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=26.70 E-value=4.7e+02 Score=23.42 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=31.8
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHhH-HHHHHHHHHHHHhhhhHHHHH
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEKEV----AGLKESV-AKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev----~d~~~rv-~e~k~RL~~LE~ess~l~~~~ 383 (403)
+-|+.+|+.-.+.|+.-+.+.|. |+..++... ..+..++ .++.++|..|+..+.+.+.-|
T Consensus 31 ~RLKQAKeEA~~Eie~yr~qrE~---efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~~V 95 (108)
T KOG1772|consen 31 RRLKQAKEEAEKEIEEYRSQREK---EFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSDDV 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444444444455555555444 344444443 1122233 567788888887777765544
No 365
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=26.62 E-value=4.3e+02 Score=22.93 Aligned_cols=59 Identities=12% Similarity=0.279 Sum_probs=32.4
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660 243 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305 (403)
Q Consensus 243 DIAsnf~lKs~~lRs~ym~~Ll~LIetL--~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~ 305 (403)
++|.-+.+.-..+| +|-.. +|+.-- ..+.-+..+.++|. ....+..|+++||-|.=.+.
T Consensus 5 e~a~~~gvs~~tlR-yYe~~--GLl~~~~r~~~g~R~Y~~~~~~-~l~~I~~lr~~G~sL~eI~~ 65 (127)
T cd01108 5 EAAKLTGLSAKMIR-YYEEI--GLIPPPSRSDNGYRVYNQRDIE-ELRFIRRARDLGFSLEEIRE 65 (127)
T ss_pred HHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCceecCHHHHH-HHHHHHHHHHcCCCHHHHHH
Confidence 44444445444455 44333 333211 12234678888888 45566778899997654443
No 366
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.52 E-value=5.1e+02 Score=23.83 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=8.5
Q ss_pred ccHHHHHHHHHHHhHHHh
Q 015660 278 MTKAKVKEMMAVLKDVES 295 (403)
Q Consensus 278 LS~~dL~ea~~~L~dL~~ 295 (403)
+|...=.-+..++.++-.
T Consensus 16 ft~~QAe~i~~~l~~~l~ 33 (177)
T PF07798_consen 16 FTEEQAEAIMKALREVLN 33 (177)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 367
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.51 E-value=1.2e+03 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHhhcccccccCcccchhHHHHHHHHHHHHHHH
Q 015660 234 LQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQE 269 (403)
Q Consensus 234 v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIet 269 (403)
+..+-++|.||.+.+.---+.+...+...+-.+-..
T Consensus 368 ~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~ 403 (1201)
T PF12128_consen 368 LDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQ 403 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899998888777777777666555444444
No 368
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.49 E-value=3e+02 Score=23.75 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=18.5
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 275 LMQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-+-.+.++|..+.- +..++.+||-|.
T Consensus 36 yR~Y~~~~l~~l~~-I~~lr~~G~sL~ 61 (127)
T cd04784 36 YRLYDEEHLERLLF-IRRCRSLDMSLD 61 (127)
T ss_pred CeecCHHHHHHHHH-HHHHHHcCCCHH
Confidence 46677888776554 566888998764
No 369
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.42 E-value=3.7e+02 Score=27.91 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 365 TKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 365 ~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
.++||.+++.|..-+.++|.-+|+=++.
T Consensus 201 L~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999888877663
No 370
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=1e+03 Score=27.36 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
+..+.+..++++-...|.+.+..+.+.+..+..++-.+.+||.+-.+|...+..+++.
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444455566666677777777777877788888888899999988888877766654
No 371
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.22 E-value=5.3e+02 Score=26.63 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHH-------------HHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 347 ELALKEKEVAGLKESVAKTKARLS-------------DLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~-------------~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
-|+.+|+||.++..+|.+.+..+. ...+..++|+.-+..-+-|++...
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Q 197 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655442 123455666666666666666543
No 372
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=26.21 E-value=4.7e+02 Score=23.28 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
+.++.....+....+.++..-...|......|+.-|++|.
T Consensus 172 i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 172 IEEISEISEQISASSEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333334455555555566666666666666666677763
No 373
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=26.07 E-value=5.5e+02 Score=24.01 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHhH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 328 ANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 328 ~~~d~~~e~~~~ELEe~leeL-~~kekev~d~~~rv---~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
...+..+..++.+.++..++. ...+.++...++|+ ..+..|+..|+....=|...+..++.|+..+.
T Consensus 27 ~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~ 97 (185)
T PRK01194 27 KRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLMNIT 97 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333445555666655554433 33334455555555 55677888888777778888888888887765
No 374
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.04 E-value=5.4e+02 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=23.8
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+...+.+..+|-+.|.+|..+-..-+.-|..++++.+-.
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444444556666666666666666666677777776544
No 375
>PF13166 AAA_13: AAA domain
Probab=25.99 E-value=8.9e+02 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 350 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 350 ~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..++++..++..+.....++.+|+.........+..+-..+..|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444555555566666666666666555555556666666666
No 376
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.91 E-value=70 Score=32.26 Aligned_cols=81 Identities=14% Similarity=0.285 Sum_probs=55.8
Q ss_pred cccccccceeEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHH
Q 015660 210 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAV 289 (403)
Q Consensus 210 E~~Sv~~etv~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~ 289 (403)
|++..+..-|.=|.|+=--.....++++..+||++..--.+ ...+...-..+|-+||..|..+- .|..+..+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i-~~ev~~~~~~ml~~Li~~L~~~l-------~l~~~ik~ 179 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI-AQEVEAALQQMLSQLINQLRTPL-------KLPACIKT 179 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHHHHHHHHHHcCcc-------cHHHHHHH
Confidence 55555554467778888888889999999999994322222 23334455666777888776554 57788888
Q ss_pred HhHHHhcCc
Q 015660 290 LKDVESAQI 298 (403)
Q Consensus 290 L~dL~~agf 298 (403)
+.+|++++.
T Consensus 180 v~~Lrrl~~ 188 (338)
T PF04124_consen 180 VGYLRRLPV 188 (338)
T ss_pred HHHHHHhcc
Confidence 888887764
No 377
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.83 E-value=6.1e+02 Score=26.35 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHh
Q 015660 303 LRNILNEISEAIEF 316 (403)
Q Consensus 303 L~~KLeEV~Eare~ 316 (403)
|++|+.|...++.-
T Consensus 249 l~~Ri~et~~ak~~ 262 (384)
T PF03148_consen 249 LRKRIHETQEAKNE 262 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888843
No 378
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.62 E-value=3.5e+02 Score=27.71 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=12.6
Q ss_pred cchhhhhhHHHHHHHHH
Q 015660 298 IDVDWLRNILNEISEAI 314 (403)
Q Consensus 298 fKvdWL~~KLeEV~Ear 314 (403)
+.||-|+.+|+++-|..
T Consensus 112 yqvd~Lkd~lee~eE~~ 128 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETL 128 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35788888888877655
No 379
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=25.46 E-value=8.4e+02 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHH
Q 015660 361 SVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~ 382 (403)
+-.+.+.-|.+||+-+.+|.+.
T Consensus 209 ~K~~Y~~slrnLE~ISd~IHee 230 (426)
T KOG2008|consen 209 AKGEYKMSLRNLEMISDEIHEE 230 (426)
T ss_pred hhccHHHHHHHHHHHHHHHHHh
Confidence 3345677788898888888663
No 380
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.35 E-value=1.2e+03 Score=27.57 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=20.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 015660 320 HQTIDAAKANCVNLLESTKKELESQMNELAL 350 (403)
Q Consensus 320 ~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~ 350 (403)
.+++.+-|..++..+...+.|+++-|.++..
T Consensus 482 d~~l~~~kq~~d~e~~rik~ev~eal~~~k~ 512 (861)
T PF15254_consen 482 DQELLENKQQFDIETTRIKIEVEEALVNVKS 512 (861)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555777777777777777776655443
No 381
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.30 E-value=6.6e+02 Score=24.66 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh--------hhhHHHHHHHhhhhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE--------SNRLEQIIQATQSKV 390 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e--------ss~l~~~~~~~kSKV 390 (403)
+.+++....+.|.....++...++-=+...+.++.++.. --.+...+.++.+|.
T Consensus 121 l~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf 182 (203)
T KOG3433|consen 121 LTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKF 182 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 333333333333333444433333334445556666544 334566667776654
No 382
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=25.12 E-value=5.8e+02 Score=23.94 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=3.1
Q ss_pred ccccccC
Q 015660 242 GDIAANC 248 (403)
Q Consensus 242 pDIAsnf 248 (403)
+||+.|+
T Consensus 54 ~D~TidL 60 (152)
T PF11500_consen 54 PDVTIDL 60 (152)
T ss_pred CCccccC
Confidence 3444443
No 383
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.09 E-value=5e+02 Score=23.21 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=10.3
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 355 VAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
+..++.++.+...++..++.....+
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 384
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.08 E-value=8.9e+02 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 338 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 338 ~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+.+|+.+-..|.+.+.|+.-....+.+..-++.+++.+..+.+.++..|+-++.+.
T Consensus 696 ~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 696 KLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKV 751 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443
No 385
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.98 E-value=2.9e+02 Score=25.15 Aligned_cols=6 Identities=17% Similarity=0.352 Sum_probs=2.5
Q ss_pred hhhhhh
Q 015660 300 VDWLRN 305 (403)
Q Consensus 300 vdWL~~ 305 (403)
++||+.
T Consensus 23 ~e~Lee 28 (135)
T PRK10947 23 LETLEE 28 (135)
T ss_pred HHHHHH
Confidence 444443
No 386
>PLN02943 aminoacyl-tRNA ligase
Probab=24.92 E-value=2e+02 Score=33.61 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQS 388 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~kS 388 (403)
+.++.-+++|.+++.+...|.+.+..+++
T Consensus 924 evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 924 DVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788899999998888888877764
No 387
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.62 E-value=1.2e+02 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.082 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHH
Q 015660 302 WLRNILNEISEAI 314 (403)
Q Consensus 302 WL~~KLeEV~Ear 314 (403)
=++.||+.+.|-.
T Consensus 4 D~EsklN~AIERn 16 (166)
T PF04880_consen 4 DFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3566666555544
No 388
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.58 E-value=4.6e+02 Score=23.60 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=4.0
Q ss_pred HhhhHHhHHHH
Q 015660 355 VAGLKESVAKT 365 (403)
Q Consensus 355 v~d~~~rv~e~ 365 (403)
+...++.|++|
T Consensus 56 ~~~lk~dVsem 66 (112)
T PF07439_consen 56 VSTLKADVSEM 66 (112)
T ss_pred HHHHHhhHHhc
Confidence 33333333333
No 389
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.51 E-value=4.5e+02 Score=27.06 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 316 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 316 ~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+|-.||.++.+|+.- ...-....++.+.+++++..+..... ....+-|.+......++.+.|.+++.++.+|
T Consensus 36 ~Y~~yQ~~EQAr~~A-~~fA~~ld~~~~kl~~Ms~~ql~~~~-----~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 36 WYYFYQNAEQARQEA-IEFADSLDELKEKLKEMSSTQLRANI-----AKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=24.48 E-value=1.2e+03 Score=31.04 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 329 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 329 ~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
.|+....+...+|++.-++..+++.++.++=.+.-++-+.-.-++..-..|.+.|.++--|
T Consensus 555 ~W~~~k~e~~~~L~~~ne~~i~Le~~I~~Lfk~y~~~~~e~~yi~~lK~~lk~kiK~is~k 615 (2757)
T TIGR01612 555 NWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDK 615 (2757)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555666666666666666666655555444444334444444444444444433
No 391
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=24.29 E-value=3.1e+02 Score=30.26 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=10.7
Q ss_pred HHHHHhhhhHHHHHH
Q 015660 370 SDLELESNRLEQIIQ 384 (403)
Q Consensus 370 ~~LE~ess~l~~~~~ 384 (403)
.+|||+..+|.+.++
T Consensus 611 ~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 611 SNLEMEIEKLKKAVL 625 (627)
T ss_pred hhhHhhHHHHHHHhh
Confidence 467888888877654
No 392
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=24.20 E-value=5.7e+02 Score=23.57 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=21.6
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 015660 274 SLMQMTKAKVKEMMAVLKDVESAQIDVDW 302 (403)
Q Consensus 274 pl~eLS~~dL~ea~~~L~dL~~agfKvdW 302 (403)
.-+-.+.+||..+ ..+..|+++||.|+=
T Consensus 36 gyR~Y~~~dl~rL-~~I~~lr~~G~sL~e 63 (172)
T cd04790 36 NYRLYGERDLERL-EQICAYRSAGVSLED 63 (172)
T ss_pred CCccCCHHHHHHH-HHHHHHHHcCCCHHH
Confidence 3477888999888 666778999998653
No 393
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.17 E-value=9.4e+02 Score=27.42 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
|-+.-+....+.++.+|+..++|.+.++++-.-..+|..++-
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~ 629 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAK 629 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666665555555554444444444444333
No 394
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.14 E-value=5.5e+02 Score=23.37 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 399 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~ 399 (403)
..+.-.+.++.....++.....++.+..+.+...++.|..+..+..++......++.+-.-|..-+|+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 45555666777777788888888888888889999999999999999888888787777666555554
No 395
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=24.11 E-value=89 Score=30.71 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcc-hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 237 IISRYGDIAANCNLESNSMRAYYLECLCSVVQELQST-SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 237 IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~s-pl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
|+..||=|+..-.+..-..+..|||-.|.+.-..... .+..|+.+++.++...+..-..+-+-.+|+..++.
T Consensus 180 LL~nHGvi~~G~~l~eA~~~~~~LE~~A~i~l~a~~~G~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (260)
T PRK07090 180 LLSHHGQLVAGKSIEEACVLALLIERAARLQLLAMAAGPIKPIPPELAREAHDWISTPKRSAATFAYYARRAL 252 (260)
T ss_pred EECCCCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCHHHHHHHHHhhcCcchhHhhHHHHHHHHH
Confidence 4578999999999999999999999999986554432 34889999998886654322222233445544443
No 396
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=24.05 E-value=4.7e+02 Score=22.59 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=33.1
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 015660 242 GDIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 304 (403)
Q Consensus 242 pDIAsnf~lKs~~lRs~ym~~Ll~LIetL--~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~ 304 (403)
+++|.-+.+....+| +|-. .+||--- ..+--+..|.+++.... .+..++.+||-|+=++
T Consensus 4 ~e~a~~~gvs~~tlR-yYe~--~GLl~p~~r~~~gyR~Y~~~~l~~l~-~I~~lr~~G~sL~eI~ 64 (127)
T TIGR02044 4 GQVAKLTGLSSKMIR-YYEE--KGLIPPPLRSEGGYRTYTQQHLDELR-LISRARQVGFSLEECK 64 (127)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCCcCCCCCeecCHHHHHHHH-HHHHHHHCCCCHHHHH
Confidence 345555555555555 3322 2333211 12334778888888776 5556889999765333
No 397
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.04 E-value=1.8e+02 Score=24.81 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=35.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 015660 321 QTIDAAKANCVNLLESTKKELESQM---NELALKEKEVAGLKESVAKTKARLSDLELESNR 378 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~l---eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~ 378 (403)
..++++-..|.+.++.....|.... +.=...++|+..+++++......|..|.-+..+
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 5566677777777777766553321 222334466666666777777777777666555
No 398
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.02 E-value=9.1e+02 Score=26.89 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAI 314 (403)
Q Consensus 300 vdWL~~KLeEV~Ear 314 (403)
.+||..+|.++....
T Consensus 196 ~~~L~~ql~~l~~~l 210 (754)
T TIGR01005 196 ADFLAPEIADLSKQS 210 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589988888877655
No 399
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=24.00 E-value=2.9e+02 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=5.2
Q ss_pred HHHHhhhhhhhc
Q 015660 382 IIQATQSKVTKF 393 (403)
Q Consensus 382 ~~~~~kSKV~kf 393 (403)
++..=+.++.+|
T Consensus 68 Rl~~dW~~~~~~ 79 (134)
T PF08336_consen 68 RLHQDWPKWEKL 79 (134)
T ss_pred HHHHhhhhHHHH
Confidence 333344444444
No 400
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=23.96 E-value=5.1e+02 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 282 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 282 dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
.+.+|...+..+-..-+++.=+++.|.-+.++.
T Consensus 117 ~lD~a~~~~~~ll~~~i~lAe~E~~l~~L~~ei 149 (201)
T PRK02195 117 WVDTGIELLKELVQLKIEAEVLQERLLLLEEEL 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555566666666666555555
No 401
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.90 E-value=6.2e+02 Score=24.64 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=18.6
Q ss_pred ccEEeeccchHHHHHHHhhcc
Q 015660 222 GKYHVRASISSILQSIISRYG 242 (403)
Q Consensus 222 nGfqVl~Sqv~~v~~IFeKHp 242 (403)
+||.|..+.=.+|+.+|+|.-
T Consensus 17 ~G~rIPr~vPasLrasf~k~~ 37 (195)
T PF12761_consen 17 DGYRIPREVPASLRASFEKEQ 37 (195)
T ss_pred cCCcCCccCCHHHHHHHhcCC
Confidence 599999999999999999864
No 402
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.76 E-value=2.2e+02 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=11.7
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHH
Q 015660 351 KEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 351 kekev~d~~~rv~e~k~RL~~LE 373 (403)
-++.+.+++.|+.++..+..++|
T Consensus 13 ~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 13 TKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 403
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.75 E-value=2.7e+02 Score=24.73 Aligned_cols=21 Identities=43% Similarity=0.428 Sum_probs=13.6
Q ss_pred HhcCcchhhhhhHHHHHHHHH
Q 015660 294 ESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 294 ~~agfKvdWL~~KLeEV~Ear 314 (403)
++|.=-|=||+.+|+++.+++
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~ 26 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELK 26 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444567778888776666
No 404
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.67 E-value=4.4e+02 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=5.5
Q ss_pred hHHHHHHHhhhhhh
Q 015660 378 RLEQIIQATQSKVT 391 (403)
Q Consensus 378 ~l~~~~~~~kSKV~ 391 (403)
.|+.+|..|..+++
T Consensus 100 ~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 100 ALSAKIEQLAVQVE 113 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333433444443
No 405
>PRK11519 tyrosine kinase; Provisional
Probab=23.64 E-value=1.1e+03 Score=26.54 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHh
Q 015660 281 AKVKEMMAVLKDVES 295 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ 295 (403)
.+|..+...|.+.+.
T Consensus 281 ~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 281 SRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 406
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=23.54 E-value=6.9e+02 Score=24.30 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-----cCcchhhhhhHHHHHH
Q 015660 252 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-----AQIDVDWLRNILNEIS 311 (403)
Q Consensus 252 s~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~-----agfKvdWL~~KLeEV~ 311 (403)
...+-..+++.+..+++.+...+-..+...-.......+.+|.. ..+. .|+.+.|.++.
T Consensus 181 ~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~-~~~~~~l~~~~ 244 (367)
T PF04286_consen 181 LDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIE-ELKDKLLSELI 244 (367)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhhhhhH
Confidence 45555666777777777777444344554444444445555544 2222 55555555544
No 407
>PRK11281 hypothetical protein; Provisional
Probab=23.52 E-value=1e+03 Score=28.83 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660 282 KVKEMMAVLKDVESAQIDVDWLRNILN 308 (403)
Q Consensus 282 dL~ea~~~L~dL~~agfKvdWL~~KLe 308 (403)
+|..+.+.|...++..=+.+=|+++|.
T Consensus 64 ~l~~tL~~L~qi~~~~~~~~~L~k~l~ 90 (1113)
T PRK11281 64 DLEQTLALLDKIDRQKEETEQLKQQLA 90 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433344444443
No 408
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.46 E-value=3.5e+02 Score=30.81 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 015660 333 LLESTKKELESQMNELALKEKEVA 356 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~ 356 (403)
.++.++|||.++++++.+|.+|.+
T Consensus 97 ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555555544444433
No 409
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.37 E-value=2.8e+02 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=15.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 325 AAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 325 ~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
++++-.++.++.+.+.+++..+.|..+.+++..
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434445555555455444444444444444
No 410
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.25 E-value=7.4e+02 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015660 334 LESTKKELESQMNELALK 351 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~k 351 (403)
+...++.|.+..+.|...
T Consensus 41 I~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 411
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=23.17 E-value=4.2e+02 Score=21.70 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+....+++.....++.+.+.|.+....|.+.|..+-.+|++.
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666667777777777777777777777777777654
No 412
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=23.16 E-value=8.8e+02 Score=25.38 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhH
Q 015660 363 AKTKARLSDLELESNRL 379 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l 379 (403)
.+|.++|+.|+....+|
T Consensus 71 ~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 71 EEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 67777777777766665
No 413
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.15 E-value=9.3e+02 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=15.3
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhHHHhcC
Q 015660 266 VVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 297 (403)
Q Consensus 266 LIetL~~spl~eLS~~dL~ea~~~L~dL~~ag 297 (403)
|+..+=-.|+..+=+..=..+...|.+.+.+.
T Consensus 17 lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~ 48 (445)
T PRK13428 17 LVWRFVVPPVRRLMAARQDTVRQQLAESATAA 48 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445554555555555555555543
No 414
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.13 E-value=9e+02 Score=27.65 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 355 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev 355 (403)
+.++..+|....+.|..+-.. +--.|++..|......-+.+.++.. .-++....+|.+. |...++..
T Consensus 617 ~~~t~~dL~~~a~~L~~la~~-~~~~~~~~~L~~~a~~l~~~~~~~v---------~pl~~~~~~L~~~---l~~L~~~~ 683 (806)
T PF05478_consen 617 KPLTPVDLPSLANQLEALANS-LPNGWLRNALKNEAQNLRAIQKELV---------SPLEQLVSKLNQS---LKKLDSLS 683 (806)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHH---HHHHHHhc
Confidence 445666777777777777654 5567799999877665543322111 1222233333333 33333335
Q ss_pred hhhHHhHHHHHHHHHHHHHh
Q 015660 356 AGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~e 375 (403)
..+...+...-+++.++|..
T Consensus 684 ~~l~~~i~~ll~~v~~aq~f 703 (806)
T PF05478_consen 684 SNLQNSINILLDAVQRAQDF 703 (806)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777755
No 415
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.06 E-value=8.8e+02 Score=25.36 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=5.6
Q ss_pred CcccchhHHHH
Q 015660 248 CNLESNSMRAY 258 (403)
Q Consensus 248 f~lKs~~lRs~ 258 (403)
.+..+..+|+-
T Consensus 211 ~~~d~kDWR~h 221 (359)
T PF10498_consen 211 IRADAKDWRSH 221 (359)
T ss_pred ccCCcchHHHH
Confidence 34445556653
No 416
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.80 E-value=4.5e+02 Score=24.97 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=8.8
Q ss_pred hhhhhhhccccchhhhc
Q 015660 386 TQSKVTKFSQKSLADEI 402 (403)
Q Consensus 386 ~kSKV~kf~~kSl~D~l 402 (403)
++..+++..-.+.+||.
T Consensus 128 ~~~~~~~~~i~AP~~G~ 144 (322)
T TIGR01730 128 AQLNLRYTEIRAPFDGT 144 (322)
T ss_pred HHHhhccCEEECCCCcE
Confidence 44444555555555554
No 417
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=22.76 E-value=7.4e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=32.8
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 015660 273 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 310 (403)
Q Consensus 273 spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV 310 (403)
.||+.+-+.++.++...-+-|+..-+.+|-.++|+...
T Consensus 110 ~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka 147 (244)
T cd07595 110 SPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA 147 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 35578888999999999999999999999999999744
No 418
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.76 E-value=74 Score=25.62 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=19.5
Q ss_pred eEeccEEeeccchHHHHHHHhhccccc
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIA 245 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIA 245 (403)
+.=+|+.|.|+. +.+...|.|||+.+
T Consensus 51 a~~~~~kv~p~C-~y~~~~~~~hpey~ 76 (78)
T PF14542_consen 51 ARENGLKVVPTC-SYVAKYFRRHPEYQ 76 (78)
T ss_dssp HHHTT-EEEETS-HHHHHHHHH-GGGT
T ss_pred HHHCCCEEEEEC-HHHHHHHHhCcccc
Confidence 556899999987 57779999999853
No 419
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=22.75 E-value=9.2e+02 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 281 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
.+|.+....+..|. -.|+|+=|+.++.++.+..
T Consensus 7 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~l 39 (367)
T PRK00578 7 ERLKDLDEKLENIR-GVLDVDALKERLEELEAEA 39 (367)
T ss_pred HHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHh
Confidence 45777777777776 5688888888888887544
No 420
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=22.61 E-value=5.2e+02 Score=22.56 Aligned_cols=25 Identities=0% Similarity=0.101 Sum_probs=18.3
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
+..+.+++..+ ..+..|++.||-|+
T Consensus 37 R~Y~~~~~~~l-~~I~~lr~~G~sL~ 61 (133)
T cd04787 37 RLYSEKDLSRL-RFILSARQLGFSLK 61 (133)
T ss_pred eeCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 46677777766 56677889999764
No 421
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=22.49 E-value=1.7e+02 Score=24.26 Aligned_cols=61 Identities=11% Similarity=0.280 Sum_probs=33.2
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 015660 243 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 307 (403)
Q Consensus 243 DIAsnf~lKs~~lRs~ym~~Ll~LIetL--~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KL 307 (403)
++|.-|.+....+| +|-. .+++.-. ..+.-+..|.+|+..+.... .|+..||-++=++.-|
T Consensus 5 eva~~~gvs~~tlR-~ye~--~Gll~~~~~~~~g~R~y~~~di~~l~~i~-~lr~~g~~l~~i~~~~ 67 (103)
T cd01106 5 EVAKLTGVSVRTLH-YYDE--IGLLKPSRRTENGYRLYTEEDLERLQQIL-FLKELGFSLKEIKELL 67 (103)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCceeeCHHHHHHHHHHH-HHHHcCCCHHHHHHHH
Confidence 44555566666666 3322 1222111 11223668888887776554 5888898876444433
No 422
>PF13514 AAA_27: AAA domain
Probab=22.48 E-value=1.1e+03 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
.++.....++.+++.|+..|...+..++.....|
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555444443
No 423
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=22.43 E-value=5.6e+02 Score=22.87 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHH
Q 015660 361 SVAKTKARLSDLE 373 (403)
Q Consensus 361 rv~e~k~RL~~LE 373 (403)
.++++..|+.+||
T Consensus 127 ~~~~~~~riaEle 139 (139)
T PF13935_consen 127 EIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHhcC
Confidence 3455555666654
No 424
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=22.40 E-value=6.3e+02 Score=23.41 Aligned_cols=11 Identities=27% Similarity=-0.064 Sum_probs=6.9
Q ss_pred HhhcccccccC
Q 015660 238 ISRYGDIAANC 248 (403)
Q Consensus 238 FeKHpDIAsnf 248 (403)
-.=|||..++.
T Consensus 29 ~~~HPDk~~~~ 39 (171)
T PRK05014 29 RQFHPDKFANA 39 (171)
T ss_pred HHhCcCCCCCC
Confidence 34599976543
No 425
>PRK12705 hypothetical protein; Provisional
Probab=22.40 E-value=8.7e+02 Score=26.73 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015660 340 ELESQMNELALKEKEVAG 357 (403)
Q Consensus 340 ELEe~leeL~~kekev~d 357 (403)
.|+...+.|..++.++..
T Consensus 92 ~l~~~~~~l~~~~~~l~~ 109 (508)
T PRK12705 92 QLDARAEKLDNLENQLEE 109 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 426
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.37 E-value=9.3e+02 Score=29.67 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
.++...+.++++++.+.++...+.+..+++...+..|...+
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAE 552 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 44445556666666676666666666667766666666544
No 427
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.34 E-value=9.7e+02 Score=26.96 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 015660 364 KTKARLSDLELESNRLEQII 383 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~ 383 (403)
+.++||.+||....++....
T Consensus 119 EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555444444433
No 428
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.29 E-value=3.2e+02 Score=24.62 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=21.4
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 315 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 315 e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
+++++...+++.=-..-+.+..+++.+.++++|=...+.|-..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 4455555544443333344555555555555555555544444
No 429
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.26 E-value=9.5e+02 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
.+.++|.++++....+.+--+||.++.
T Consensus 349 rvkekE~elke~Ekel~~kf~~lkr~h 375 (406)
T KOG3859|consen 349 RVKEKEAELKEAEKELHEKFDRLKRLH 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 430
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.15 E-value=2.5e+02 Score=32.24 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
+.++.-+.+|.+++.+...|.+.+..++
T Consensus 846 ~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 846 EVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778888888888888888776653
No 431
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.14 E-value=9.9e+02 Score=26.82 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 015660 301 DWLRNILNEISEAIEFST 318 (403)
Q Consensus 301 dWL~~KLeEV~Eare~~~ 318 (403)
+.++.|.++...+.++++
T Consensus 256 ~~l~~k~~~a~~a~~fL~ 273 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQ 273 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777776665
No 432
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.12 E-value=3.1e+02 Score=29.29 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHH
Q 015660 300 VDWLRNILNEISEAIE 315 (403)
Q Consensus 300 vdWL~~KLeEV~Eare 315 (403)
..=|+.||.++.+.++
T Consensus 165 ~~L~~~Rl~~L~~qi~ 180 (475)
T PF10359_consen 165 IELIQERLDELEEQIE 180 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777766664
No 433
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.10 E-value=9.2e+02 Score=25.23 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 364 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
+....|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~ 326 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGV 326 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeE
Confidence 445555555566666666666667777777777777775
No 434
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.97 E-value=7.4e+02 Score=29.83 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHhcC
Q 015660 280 KAKVKEMMAVLKDVESAQ 297 (403)
Q Consensus 280 ~~dL~ea~~~L~dL~~ag 297 (403)
...|.+-.++|.|--+|.
T Consensus 371 ~~~lEETlSTLEYA~RAK 388 (1041)
T KOG0243|consen 371 KHNLEETLSTLEYAHRAK 388 (1041)
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 456777788888877664
No 435
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.95 E-value=1.2e+03 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=13.9
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHHH
Q 015660 232 SILQSIISRYGDIAANCNLESNSMRAYYLEC 262 (403)
Q Consensus 232 ~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~ 262 (403)
..+..+-+|-++.-. +|..+|+-.|-.
T Consensus 159 ~~~EaL~ekLk~~~e----en~~lr~k~~ll 185 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEE----ENTQLRSKAMLL 185 (596)
T ss_pred HHHHHHHhhcCChHH----HHHHHHHHHHHH
Confidence 334445555555432 466667655443
No 436
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=21.94 E-value=1e+03 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH----HHHhhhhHHHHHHHhhhhhhhccccchhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSD----LELESNRLEQIIQATQSKVTKFSQKSLAD 400 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~----LE~ess~l~~~~~~~kSKV~kf~~kSl~D 400 (403)
.+.+++++.+.|.++..-....++.+.+|+..+.. +......|......+..|++-|......|
T Consensus 118 ~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~~~~~ 185 (377)
T KOG2896|consen 118 LESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQRIQD 185 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhHHHhh
Confidence 35567777777766655555555555555443322 22223333444556777888887766555
No 437
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.91 E-value=2e+02 Score=24.87 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.6
Q ss_pred HHhHHHhcCc
Q 015660 289 VLKDVESAQI 298 (403)
Q Consensus 289 ~L~dL~~agf 298 (403)
+|.+-++.|+
T Consensus 16 tlRyYe~~GL 25 (118)
T cd04776 16 TLRFYEDKGL 25 (118)
T ss_pred HHHHHHHCCC
Confidence 4444444443
No 438
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.85 E-value=30 Score=38.35 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 358 LKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 358 ~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
+...+..+++++..|+.+..+|..-...++..++
T Consensus 389 l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 389 LEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444444444443
No 439
>PRK10698 phage shock protein PspA; Provisional
Probab=21.79 E-value=7.3e+02 Score=23.94 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-----------hhhhHH
Q 015660 312 EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL-----------ESNRLE 380 (403)
Q Consensus 312 Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~-----------ess~l~ 380 (403)
.|++-+.........-...+..++.....+++....|.+.+..+.+++.|-..+..|...++. ....-.
T Consensus 86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~ 165 (222)
T PRK10698 86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAM 165 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Q ss_pred HHHHHhhhhhhhccccchhhhcC
Q 015660 381 QIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 381 ~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
..|.-+..||+..+...=+.+++
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~~~~ 188 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESHGFG 188 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcc
No 440
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=21.73 E-value=1.7e+02 Score=25.57 Aligned_cols=48 Identities=6% Similarity=0.077 Sum_probs=40.9
Q ss_pred HhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 015660 270 LQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 318 (403)
Q Consensus 270 L~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~ 318 (403)
-|..| .+|+..||....+.+..=..+.|.+..++-+-+-.....+.+.
T Consensus 45 TC~~P-eNI~~~D~~~L~~~I~~~q~~~~~~~~~~lk~~yl~~l~e~l~ 92 (100)
T PF11291_consen 45 TCNRP-ENISEKDLNNLENSIQNYQSDIFYINFYKLKKDYLSLLKENLE 92 (100)
T ss_pred ccCCC-CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677 9999999999999999999999999999888777776665443
No 441
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.62 E-value=8.3e+02 Score=24.54 Aligned_cols=24 Identities=8% Similarity=-0.134 Sum_probs=17.0
Q ss_pred ccccCcccchhHHHHHHHHHHHHH
Q 015660 244 IAANCNLESNSMRAYYLECLCSVV 267 (403)
Q Consensus 244 IAsnf~lKs~~lRs~ym~~Ll~LI 267 (403)
|...+.-.+|..=....|.|+...
T Consensus 133 i~I~~~~~dP~~A~~ian~l~~~~ 156 (362)
T TIGR01010 133 LTLNVTAFDAEEAQKINQRLLKEG 156 (362)
T ss_pred EEEEEEecCHHHHHHHHHHHHHHH
Confidence 455677778888887777776633
No 442
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.60 E-value=5.8e+02 Score=23.37 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=29.3
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare 315 (403)
...|..||..=..++.|=-+-|+|| -++..++++....+
T Consensus 15 ~K~s~~dLahNL~v~~~R~dL~~KV-~~~~~~~~lk~~~k 53 (126)
T PF07028_consen 15 EKVSNSDLAHNLRVTCYRSDLGSKV-SQKKLLEELKNLSK 53 (126)
T ss_pred cCCcHHHHHhhhhhhhhHhhHHHHH-HHHHHHHHHHHHHH
Confidence 5678999999999999999999999 34444555554443
No 443
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.58 E-value=3.7e+02 Score=27.77 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
+|.+++++|.+..+.+.. .+..-+.+|..|+.....|.+....++..+
T Consensus 105 ~L~~~~~el~~~k~~l~~---~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQ---ENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 444555555444444433 577778888888888888877776666554
No 444
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.54 E-value=3.8e+02 Score=28.97 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=9.7
Q ss_pred HHhhhhhhhccccc
Q 015660 384 QATQSKVTKFSQKS 397 (403)
Q Consensus 384 ~~~kSKV~kf~~kS 397 (403)
...+.||+.|..++
T Consensus 106 ~~v~~qvEeFf~~~ 119 (436)
T PF01093_consen 106 GLVGRQVEEFFNKS 119 (436)
T ss_pred hhHHHHHHHHHhhC
Confidence 45677888887665
No 445
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=21.49 E-value=8e+02 Score=24.30 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660 252 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 315 (403)
Q Consensus 252 s~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare 315 (403)
-......|.++|+..|++|++.- ++.. ..+..++. ..+.+||..|=+-+..+.+
T Consensus 104 l~~q~~~y~~vL~~cl~~L~~li-~~~r-------l~~q~~~d--~~~~~~L~~kceam~lKLr 157 (238)
T PF14735_consen 104 LERQFATYYQVLLQCLQLLQKLI-EKHR-------LGTQAELD--KIKAEYLEAKCEAMILKLR 157 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHh-------hcchHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999998754 2221 11222222 3347899888777765553
No 446
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.42 E-value=8.4e+02 Score=26.29 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 015660 329 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 385 (403)
Q Consensus 329 ~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~ 385 (403)
.||..++....-|..=..+|...-.+|..+++|-.+|.-+|.+-..-..+|...|.+
T Consensus 25 ~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~ 81 (508)
T PF04129_consen 25 ECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDD 81 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355566666555555567777777788888888888888888777777777665544
No 447
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=1.6e+02 Score=30.51 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 015660 337 TKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d 357 (403)
+.+||....+||.+|+.|++-
T Consensus 65 kq~eL~~rqeEL~Rke~ELdR 85 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDR 85 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 445666666666666666655
No 448
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=21.22 E-value=3.2e+02 Score=31.32 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 015660 279 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 316 (403)
Q Consensus 279 S~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~ 316 (403)
+.++--+...++.-.++..+=+.+|+.-++-+...+++
T Consensus 176 ~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I 213 (784)
T PRK10787 176 KLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI 213 (784)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444456665555544444444
No 449
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=4e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=29.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ 374 (403)
+.+++++.+.+++++.... |+.+.+..+.+..+..+.+++.|.+|..
T Consensus 65 qel~EAr~nV~kRlefI~~-------Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 65 QELEEARTNVGKRLEFISK-------EIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665543 4455566666766666777777766654
No 450
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.19 E-value=4.6e+02 Score=23.18 Aligned_cols=43 Identities=30% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
++++|++...+|.+-+.+|.+ =+....+-|.+|-....+|-+-
T Consensus 30 l~~eL~~~k~el~~yk~~V~~---HF~~ta~Ll~~l~~~Y~~l~~H 72 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVND---HFAQTAELLDNLTQDYQKLYQH 72 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555 4455555555555555554433
No 451
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=7.4e+02 Score=26.81 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhHH
Q 015660 359 KESVAKTKARLSDLELESNRLE 380 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~ 380 (403)
.+.+.+++.+|..++.....++
T Consensus 74 ~~e~~~l~~~l~~~e~~~~~~~ 95 (429)
T COG0172 74 IAEVKELKEKLKELEAALDELE 95 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHHH
Confidence 3344444444444444444433
No 452
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.06 E-value=7.6e+02 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=9.3
Q ss_pred hhhccHHHHHHHHHHHhHHH
Q 015660 275 LMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 275 l~eLS~~dL~ea~~~L~dL~ 294 (403)
.+..-+.++.+|...|..+.
T Consensus 147 ~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 147 QRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 453
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.93 E-value=4.9e+02 Score=21.62 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 015660 328 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 328 ~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~k 396 (403)
+.+-..=...-..|+..-++|......... |+..+..++.+=-.....+.+-+.++..||+.+.++
T Consensus 14 ~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~---rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~k 79 (88)
T PF10241_consen 14 DEILALQAQTLGRLNKTNEELLNLNDLSQQ---RLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAK 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=20.74 E-value=7.1e+02 Score=23.39 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=30.2
Q ss_pred hHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~sp 274 (403)
++....-|---|.|+++|.+++| .+...-|=.||..|+..+
T Consensus 21 le~~~e~~~~Lgl~vs~F~~tsq---~~L~qrl~tLv~~L~~l~ 61 (147)
T KOG3046|consen 21 LEKFLENFRQLGLIVSNFQPTSQ---DALNQRLNTLVRGLQDLD 61 (147)
T ss_pred HHHHHHHHHHHhHhhhcCCCCcH---HHHHHHHHHHHHHhhhhH
Confidence 33334445567999999999999 777777777777776655
No 455
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.74 E-value=5.3e+02 Score=21.91 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHhhhHHhHHHHHHHH
Q 015660 354 EVAGLKESVAKTKARL 369 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL 369 (403)
+-..|.+|+..+-+++
T Consensus 61 E~~~WqerLr~LLGkm 76 (79)
T PRK15422 61 QQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444445555554443
No 456
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.69 E-value=6.3e+02 Score=22.80 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH
Q 015660 362 VAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~ 383 (403)
+....+=+.+|+.+..+-+++|
T Consensus 95 lk~y~~~~~~L~k~I~~~e~iI 116 (126)
T PF09403_consen 95 LKKYKDLLNKLDKEIAEQEQII 116 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 457
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.67 E-value=5.9e+02 Score=22.48 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHHH
Q 015660 280 KAKVKEMMAVLKDVE 294 (403)
Q Consensus 280 ~~dL~ea~~~L~dL~ 294 (403)
..++..++++|.+|-
T Consensus 30 ~~~~~~vin~i~~Ll 44 (151)
T PF11559_consen 30 EDNDVRVINCIYDLL 44 (151)
T ss_pred cccHHHHHHHHHHHH
Confidence 455666666666553
No 458
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=20.38 E-value=6e+02 Score=28.73 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.5
Q ss_pred HHHhcCcch
Q 015660 292 DVESAQIDV 300 (403)
Q Consensus 292 dL~~agfKv 300 (403)
.|.+.||..
T Consensus 521 ~Ls~iGItt 529 (661)
T PRK06664 521 MLNQIGIST 529 (661)
T ss_pred CHHHCCeee
Confidence 345556643
No 459
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.36 E-value=5.6e+02 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 363 AKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
....++|.+||.-...|-+++..|--|++-
T Consensus 54 ~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDV 83 (90)
T PHA02675 54 RETGARLDRLERHLETLREALLKLNTKIDV 83 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Confidence 445568888888777888888888777763
No 460
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=20.28 E-value=5.2e+02 Score=21.60 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=27.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHhH-HHHHHHHHHHHHhhh-hHHHHHHHhhhhh
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEK-EVAGLKESV-AKTKARLSDLELESN-RLEQIIQATQSKV 390 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kek-ev~d~~~rv-~e~k~RL~~LE~ess-~l~~~~~~~kSKV 390 (403)
..+..+++.-+..++..+.+.++.+........ +.......+ .++.+++..|..... +.++.+..|=+.|
T Consensus 29 ~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 29 QRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444555555555544333222211 222222233 444555655554333 3344444444433
No 461
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.26 E-value=72 Score=27.08 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=3.8
Q ss_pred HHHhcCcchhh
Q 015660 292 DVESAQIDVDW 302 (403)
Q Consensus 292 dL~~agfKvdW 302 (403)
|+....|+..|
T Consensus 5 di~~~~F~~~~ 15 (131)
T PF05103_consen 5 DIRNKEFKKSM 15 (131)
T ss_dssp HHHH----EEE
T ss_pred HHhhCccCCCC
Confidence 45555565555
No 462
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.25 E-value=4.7e+02 Score=21.14 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHH
Q 015660 303 LRNILNEISEAI 314 (403)
Q Consensus 303 L~~KLeEV~Ear 314 (403)
|.-.|+++....
T Consensus 12 l~P~l~~~~~~l 23 (92)
T PF14712_consen 12 LEPDLDRLDQQL 23 (92)
T ss_pred HhhhHHHHHHHH
Confidence 444555555444
No 463
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.20 E-value=6e+02 Score=22.33 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 015660 339 KELESQMNELALKEKEVAGLKESVAKTKARLSDL 372 (403)
Q Consensus 339 ~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~L 372 (403)
.+|+..-.++..+..+...++.+..+...++..+
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 464
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=20.20 E-value=8.7e+02 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
+|...++.+. +...++++++.+||.+.+.|.-+.
T Consensus 78 ~lk~l~~~~~---~~f~a~~edi~rlE~~i~~lgaRw 111 (231)
T COG5493 78 DLKLLQRFQE---EEFRATKEDIKRLETIITGLGARW 111 (231)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444442 366778888888887666664443
No 465
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=20.10 E-value=7.2e+02 Score=29.16 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+-.+..+-=.+.+++.++|+.-|..+-.+|+.|
T Consensus 481 kd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~ 513 (861)
T PF15254_consen 481 KDQELLENKQQFDIETTRIKIEVEEALVNVKSL 513 (861)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334334445566666666665555555544
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.05 E-value=1.4e+03 Score=26.41 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=5.3
Q ss_pred hhhhHHHHHH
Q 015660 302 WLRNILNEIS 311 (403)
Q Consensus 302 WL~~KLeEV~ 311 (403)
|....++++.
T Consensus 583 ~~~~~l~~~r 592 (908)
T COG0419 583 TRKEELEELR 592 (908)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 467
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=20.03 E-value=8.2e+02 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhhhhhccccchhhhc
Q 015660 378 RLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 378 ~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
.+...+..++..+.+-.-.+.+||.
T Consensus 190 ~~~~~l~~a~~~l~~~~i~AP~dG~ 214 (327)
T TIGR02971 190 SALEAVQQAEALLELTYVKAPIDGR 214 (327)
T ss_pred HHHHHHHHHHHHHhcCEEECCCCeE
Confidence 3334444455555555556666664
Done!