Query 015660
Match_columns 403
No_of_seqs 119 out of 129
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 92.3 2 6.9E-05 43.2 13.9 53 337-389 528-580 (597)
2 3mq9_A Bone marrow stromal ant 91.0 2.1 7.1E-05 42.3 12.2 71 299-378 398-468 (471)
3 1c1g_A Tropomyosin; contractIl 90.3 4.7 0.00016 34.7 12.4 19 361-379 84-102 (284)
4 3hnw_A Uncharacterized protein 88.8 5.1 0.00017 34.9 11.4 50 332-381 82-131 (138)
5 3hnw_A Uncharacterized protein 88.4 5.5 0.00019 34.7 11.4 47 331-377 88-134 (138)
6 2dfs_A Myosin-5A; myosin-V, in 88.1 4.1 0.00014 45.8 12.9 57 335-391 987-1047(1080)
7 1m1j_B Fibrinogen beta chain; 86.3 4 0.00014 42.2 10.8 52 219-271 40-92 (464)
8 3na7_A HP0958; flagellar bioge 86.2 14 0.00047 34.4 13.5 43 335-377 93-135 (256)
9 3na7_A HP0958; flagellar bioge 86.0 4.8 0.00017 37.5 10.4 44 347-390 91-134 (256)
10 3vkg_A Dynein heavy chain, cyt 85.8 13 0.00045 46.5 16.4 24 256-280 1894-1917(3245)
11 3ol1_A Vimentin; structural ge 83.6 19 0.00065 30.3 12.3 8 300-307 50-57 (119)
12 4etp_A Kinesin-like protein KA 81.9 2.9 9.8E-05 41.9 7.3 60 334-393 5-64 (403)
13 3mq7_A Bone marrow stromal ant 81.8 23 0.00079 30.7 11.8 80 301-389 28-107 (121)
14 2dfs_A Myosin-5A; myosin-V, in 80.0 4.3 0.00015 45.6 8.6 10 302-311 925-934 (1080)
15 3iv1_A Tumor susceptibility ge 77.7 20 0.00067 29.0 9.5 64 301-373 10-73 (78)
16 2ve7_C Kinetochore protein NUF 76.5 27 0.00092 32.9 11.8 60 333-392 142-201 (250)
17 1wle_A Seryl-tRNA synthetase; 76.0 23 0.00079 36.6 12.1 40 354-393 117-156 (501)
18 3nmd_A CGMP dependent protein 75.2 9.3 0.00032 30.4 6.9 47 334-394 21-67 (72)
19 3ghg_A Fibrinogen alpha chain; 74.8 6.7 0.00023 41.4 7.7 90 263-373 62-151 (562)
20 1m1j_C Fibrinogen gamma chain; 73.6 19 0.00063 36.6 10.4 58 334-391 79-136 (409)
21 4ani_A Protein GRPE; chaperone 73.3 4.9 0.00017 37.6 5.7 58 346-403 59-116 (213)
22 3oja_B Anopheles plasmodium-re 72.7 19 0.00066 36.1 10.3 39 356-394 540-578 (597)
23 3qne_A Seryl-tRNA synthetase, 72.6 14 0.00048 38.3 9.4 38 356-393 74-111 (485)
24 2wtg_A Globin-like protein; me 72.3 32 0.0011 30.0 10.5 44 231-274 32-88 (159)
25 1c1g_A Tropomyosin; contractIl 72.0 46 0.0016 28.4 13.4 30 352-381 103-132 (284)
26 2b5u_A Colicin E3; high resolu 71.9 23 0.00077 37.3 10.7 62 333-394 315-376 (551)
27 3vem_A Helicase protein MOM1; 70.1 18 0.00062 31.1 8.0 33 368-402 80-112 (115)
28 3s4r_A Vimentin; alpha-helix, 70.1 43 0.0015 27.2 10.5 38 352-389 55-92 (93)
29 1ic2_A Tropomyosin alpha chain 69.9 38 0.0013 26.5 10.6 65 321-392 9-73 (81)
30 2wt7_B Transcription factor MA 69.4 30 0.001 28.4 8.9 29 267-296 8-36 (90)
31 1i84_S Smooth muscle myosin he 69.4 19 0.00064 40.5 10.2 14 222-235 718-731 (1184)
32 2dc3_A Cytoglobin; myoglobin, 69.1 61 0.0021 28.6 12.9 66 231-303 46-127 (193)
33 3u06_A Protein claret segregat 68.9 11 0.00038 37.9 7.6 56 338-393 9-64 (412)
34 3v6i_A V-type ATP synthase sub 67.3 64 0.0022 28.2 12.4 71 325-395 21-95 (187)
35 1i84_S Smooth muscle myosin he 65.4 29 0.001 39.0 10.7 6 222-227 764-769 (1184)
36 2dq0_A Seryl-tRNA synthetase; 64.8 64 0.0022 32.7 12.3 38 356-393 72-109 (455)
37 3ghg_A Fibrinogen alpha chain; 64.3 46 0.0016 35.2 11.2 33 332-367 131-163 (562)
38 2w83_C C-JUN-amino-terminal ki 64.1 26 0.0009 28.2 7.3 59 312-377 17-75 (77)
39 3swk_A Vimentin; cytoskeleton, 63.3 56 0.0019 26.1 11.6 79 303-387 5-83 (86)
40 1ses_A Seryl-tRNA synthetase; 62.1 36 0.0012 34.2 9.8 38 356-393 67-104 (421)
41 3a7p_A Autophagy protein 16; c 61.5 91 0.0031 27.9 12.0 64 321-384 71-134 (152)
42 3oja_A Leucine-rich immune mol 61.5 67 0.0023 31.6 11.5 38 353-390 435-472 (487)
43 1jf3_A Monomer hemoglobin comp 61.0 22 0.00075 29.4 6.8 43 231-273 28-76 (147)
44 2jee_A YIIU; FTSZ, septum, coi 60.3 67 0.0023 26.0 10.4 15 301-315 9-23 (81)
45 4fla_A Regulation of nuclear P 59.7 72 0.0025 28.1 10.2 42 340-381 100-142 (152)
46 1mba_A Myoglobin; oxygen stora 59.4 23 0.00078 29.4 6.6 43 231-273 27-82 (147)
47 1lwu_C Fibrinogen gamma chain; 59.0 20 0.00069 35.3 7.1 30 360-389 26-55 (323)
48 2oqq_A Transcription factor HY 58.6 25 0.00087 25.4 5.7 34 351-384 8-41 (42)
49 3iv1_A Tumor susceptibility ge 58.5 71 0.0024 25.7 9.0 63 328-393 10-72 (78)
50 4h22_A Leucine-rich repeat fli 58.2 84 0.0029 26.5 10.8 43 315-357 13-55 (103)
51 1it2_A Hemoglobin; hagfish, de 57.9 20 0.00069 30.1 6.1 42 231-272 35-88 (146)
52 1ic2_A Tropomyosin alpha chain 57.6 66 0.0023 25.1 10.6 35 337-371 39-73 (81)
53 2l5g_B Putative uncharacterize 57.3 18 0.00062 26.2 4.7 29 348-376 11-39 (42)
54 3pt8_B Hemoglobin III; oxygen 57.3 22 0.00074 29.8 6.2 42 231-272 28-83 (152)
55 3ghg_B Fibrinogen beta chain; 57.0 24 0.00081 36.6 7.5 53 219-272 36-88 (461)
56 3lss_A Seryl-tRNA synthetase; 56.5 1.1E+02 0.0038 31.6 12.4 35 359-393 109-144 (484)
57 3ghg_C Fibrinogen gamma chain; 55.5 51 0.0018 33.6 9.6 55 337-391 82-136 (411)
58 2zs0_A Extracellular giant hem 55.3 27 0.00092 29.0 6.4 43 231-273 29-80 (140)
59 2b9c_A Striated-muscle alpha t 54.8 1.1E+02 0.0037 26.8 12.5 44 348-391 82-125 (147)
60 2lem_A Apolipoprotein A-I; lip 54.6 1.2E+02 0.0043 27.4 12.5 38 276-313 30-69 (216)
61 3r2p_A Apolipoprotein A-I; amp 54.5 68 0.0023 28.3 9.3 18 373-390 147-164 (185)
62 1fzc_C Fibrin; blood coagulati 54.2 6.3 0.00022 38.8 2.6 49 344-392 2-50 (319)
63 3pt8_A Hemoglobin II; oxygen c 54.2 18 0.0006 30.3 5.1 42 231-272 28-83 (152)
64 4hrt_B Hemoglobin B chain; oxy 54.2 18 0.00061 30.6 5.2 42 231-272 37-89 (152)
65 3s84_A Apolipoprotein A-IV; fo 53.4 1.5E+02 0.0052 28.0 16.2 30 362-391 112-142 (273)
66 2dq3_A Seryl-tRNA synthetase; 53.4 76 0.0026 31.8 10.4 37 357-393 72-108 (425)
67 1deq_A Fibrinogen (alpha chain 52.6 89 0.0031 31.8 10.6 6 241-246 41-46 (390)
68 3oja_A Leucine-rich immune mol 52.6 63 0.0021 31.8 9.6 9 300-308 365-373 (487)
69 3tnu_B Keratin, type II cytosk 51.5 86 0.0029 26.3 9.0 14 301-314 11-24 (129)
70 2p22_C Protein SRN2; endosome, 51.4 85 0.0029 28.6 9.5 52 333-384 87-152 (192)
71 2fxo_A Myosin heavy chain, car 51.0 1.1E+02 0.0038 25.7 13.2 40 353-392 83-122 (129)
72 2v71_A Nuclear distribution pr 51.0 1.5E+02 0.0051 27.2 12.5 93 299-394 11-115 (189)
73 1hlm_A Hemoglobin (cyano Met); 51.0 23 0.00077 29.8 5.3 43 230-272 36-91 (159)
74 1yhu_C Hemoglobin B1A chain; g 50.3 48 0.0016 27.7 7.2 57 231-294 34-99 (148)
75 1nfn_A Apolipoprotein E3; lipi 50.2 1.4E+02 0.0049 26.7 12.2 16 227-242 22-37 (191)
76 1sct_A Hemoglobin II (carbonmo 49.7 36 0.0012 28.5 6.3 43 231-273 35-88 (150)
77 2lhb_A Hemoglobin V (cyano Met 49.0 39 0.0013 28.2 6.4 42 231-272 35-90 (149)
78 2ocy_A RAB guanine nucleotide 48.9 1.5E+02 0.005 26.5 12.3 22 370-391 111-132 (154)
79 2zs0_C Extracellular giant hem 48.1 40 0.0014 28.1 6.4 57 231-294 33-98 (147)
80 3mq9_A Bone marrow stromal ant 47.5 1.9E+02 0.0066 28.2 12.1 57 337-393 402-469 (471)
81 1x9f_B Erythrocruorin, globin 47.4 41 0.0014 27.9 6.3 43 231-273 31-82 (145)
82 3u59_A Tropomyosin beta chain; 46.7 1.1E+02 0.0039 24.6 12.1 19 365-383 77-95 (101)
83 3s84_A Apolipoprotein A-IV; fo 46.4 2E+02 0.0068 27.3 13.2 15 376-390 105-119 (273)
84 1yhu_D Hemoglobin B2 chain; gl 46.2 50 0.0017 27.6 6.7 43 231-273 33-84 (149)
85 2bk9_A CG9734-PA; oxygen trans 46.0 52 0.0018 27.5 6.8 40 231-270 25-76 (153)
86 1ses_A Seryl-tRNA synthetase; 45.9 98 0.0034 31.0 9.9 27 352-378 70-96 (421)
87 1gqe_A Release factor 2, RF2; 45.9 2E+02 0.0067 28.9 11.9 32 281-313 9-40 (365)
88 1gmj_A ATPase inhibitor; coile 45.8 1E+02 0.0035 25.1 8.1 29 346-374 51-79 (84)
89 3gp4_A Transcriptional regulat 45.7 1.4E+02 0.0047 25.3 11.5 29 276-305 39-67 (142)
90 3lb2_A Dehaloperoxidase A; glo 45.3 29 0.00098 29.3 5.1 43 231-273 18-73 (137)
91 1deq_A Fibrinogen (alpha chain 45.2 1.7E+02 0.0056 29.9 11.2 22 334-355 136-157 (390)
92 1m1j_C Fibrinogen gamma chain; 45.1 2.2E+02 0.0075 28.8 12.3 12 282-293 39-50 (409)
93 1dkg_A Nucleotide exchange fac 45.0 47 0.0016 30.3 6.8 40 364-403 57-96 (197)
94 2no2_A HIP-I, huntingtin-inter 44.9 1.3E+02 0.0046 24.9 10.2 47 333-379 55-101 (107)
95 1yhu_B Giant hemoglobins B cha 44.7 44 0.0015 27.5 6.0 43 231-273 31-82 (144)
96 1wle_A Seryl-tRNA synthetase; 44.6 2.2E+02 0.0074 29.4 12.4 22 355-376 125-146 (501)
97 2dq0_A Seryl-tRNA synthetase; 44.6 1.5E+02 0.0051 30.1 11.0 23 355-377 78-100 (455)
98 1gdj_A Leghemoglobin (deoxy); 44.4 1.3E+02 0.0045 24.6 13.0 69 231-305 27-109 (153)
99 2vyw_A Hemoglobin; trematode, 44.2 44 0.0015 28.2 6.1 42 231-272 30-84 (148)
100 2nrl_A Myoglobin; transport pr 43.9 1.4E+02 0.0048 24.8 10.0 42 231-272 23-77 (147)
101 1x9f_A Globin IV, extracellula 43.8 44 0.0015 28.2 6.0 57 231-294 36-101 (151)
102 1sct_B Hemoglobin II (carbonmo 43.7 30 0.001 28.9 4.9 42 231-272 36-88 (151)
103 1h97_A Globin-3; HET: HEM; 1.1 43.7 39 0.0013 28.5 5.7 42 231-272 29-83 (147)
104 2zs0_B Extracellular giant hem 43.7 51 0.0018 27.2 6.3 43 231-273 29-80 (142)
105 1u5p_A Spectrin alpha chain, b 43.6 1.5E+02 0.0053 25.2 10.9 22 229-250 33-54 (216)
106 3lax_A Phenylacetate-coenzyme 43.5 11 0.00038 29.6 2.1 30 217-249 5-34 (109)
107 3i00_A HIP-I, huntingtin-inter 43.2 98 0.0034 26.4 8.1 45 331-378 14-58 (120)
108 1x79_B RAB GTPase binding effe 43.2 1.5E+02 0.0053 25.1 9.8 15 282-296 21-35 (112)
109 3uul_A Utrophin; spectrin repe 43.1 1.1E+02 0.0038 23.5 10.8 6 301-306 16-21 (118)
110 1hlb_A Hemoglobin (deoxy); oxy 43.0 15 0.00052 30.9 3.0 43 230-272 36-91 (158)
111 1q06_A Transcriptional regulat 42.8 82 0.0028 26.4 7.5 25 276-301 37-61 (135)
112 3s4r_A Vimentin; alpha-helix, 42.5 1.3E+02 0.0046 24.2 10.8 79 280-369 15-93 (93)
113 2yy0_A C-MYC-binding protein; 42.3 26 0.0009 26.0 3.8 16 355-370 35-50 (53)
114 1q08_A Zn(II)-responsive regul 42.0 78 0.0027 24.4 6.8 23 287-316 6-28 (99)
115 3r2p_A Apolipoprotein A-I; amp 41.7 1.1E+02 0.0038 26.9 8.5 9 266-274 30-38 (185)
116 1gmj_A ATPase inhibitor; coile 41.2 1.4E+02 0.005 24.2 8.7 22 366-387 57-78 (84)
117 2fxo_A Myosin heavy chain, car 41.0 1.6E+02 0.0055 24.7 13.9 51 334-387 74-124 (129)
118 3g46_A Globin-1; oxygen transp 40.8 54 0.0018 27.4 6.1 42 231-272 34-86 (146)
119 3uux_B Mitochondrial division 40.8 1.8E+02 0.0063 27.8 10.2 57 321-391 166-222 (242)
120 2vhb_A Hemoglobin; heme, respi 40.6 1.5E+02 0.0051 24.2 10.5 44 231-274 26-72 (146)
121 1kd8_B GABH BLL, GCN4 acid bas 40.4 42 0.0014 23.6 4.3 25 359-383 7-31 (36)
122 4ad8_A DNA repair protein RECN 40.4 2.2E+02 0.0075 28.4 11.5 46 219-267 129-177 (517)
123 1b0b_A Hemoglobin; hemoprotein 40.1 37 0.0013 28.0 4.9 42 231-272 26-81 (142)
124 2ocy_A RAB guanine nucleotide 39.8 2E+02 0.007 25.6 12.8 33 361-393 116-148 (154)
125 3etw_A Adhesin A; antiparallel 39.7 1.8E+02 0.0062 24.9 10.4 53 342-394 47-102 (119)
126 1ith_A Hemoglobin (cyano Met); 39.6 35 0.0012 28.2 4.7 41 231-271 27-80 (141)
127 1x3k_A Hemoglobin component V; 39.1 71 0.0024 26.9 6.6 42 231-272 29-83 (152)
128 2jyp_A Aragonite protein AP7; 39.0 4.9 0.00017 27.7 -0.6 7 17-23 7-13 (36)
129 3uun_A Dystrophin; triple heli 38.7 1.3E+02 0.0045 23.0 12.3 6 301-306 16-21 (119)
130 4emc_A Monopolin complex subun 38.3 1.2E+02 0.004 28.1 8.2 55 328-382 16-70 (190)
131 2v66_B Nuclear distribution pr 38.3 1.8E+02 0.0063 24.6 11.0 13 297-309 16-28 (111)
132 2b9c_A Striated-muscle alpha t 38.1 2E+02 0.0069 25.0 11.3 32 361-392 74-105 (147)
133 2c0k_A Hemoglobin; oxygen tran 38.0 62 0.0021 27.1 6.0 41 231-271 25-78 (151)
134 3u1c_A Tropomyosin alpha-1 cha 37.6 1.6E+02 0.0056 23.9 13.2 16 322-337 13-28 (101)
135 3mvc_A Globin protein 6; oxyge 37.5 1.7E+02 0.006 24.9 8.9 44 231-274 28-79 (161)
136 3mq7_A Bone marrow stromal ant 37.5 1.3E+02 0.0044 26.1 7.8 18 277-294 28-45 (121)
137 1yhu_A Hemoglobin A1 chain; gl 37.2 60 0.0021 27.1 5.8 43 231-273 29-80 (145)
138 3ubc_A Hemoglobin-like flavopr 37.1 82 0.0028 25.4 6.5 44 231-274 25-68 (131)
139 2e7s_A RAB guanine nucleotide 36.8 44 0.0015 29.4 4.9 17 333-349 64-80 (135)
140 1x9f_D Globin C, hemoglobin ch 36.7 73 0.0025 26.1 6.2 43 231-273 29-80 (140)
141 1x46_A Globin chain, hemoglobi 36.6 71 0.0024 26.5 6.2 42 231-272 27-81 (150)
142 1deb_A APC protein, adenomatou 36.5 1.4E+02 0.0046 22.5 6.9 34 357-390 21-54 (54)
143 1x9f_C Erythrocruorin, globin 36.5 56 0.0019 27.4 5.5 57 231-294 37-102 (153)
144 1ci6_A Transcription factor AT 36.4 1.3E+02 0.0046 22.5 7.9 34 350-383 27-60 (63)
145 3p8c_E Probable protein brick1 36.0 1.3E+02 0.0046 24.0 7.2 46 347-392 24-70 (75)
146 1bin_A Leghemoglobin A; heme, 36.0 37 0.0013 27.6 4.2 68 231-306 27-105 (143)
147 1nfn_A Apolipoprotein E3; lipi 35.9 95 0.0033 27.9 7.2 17 374-390 165-181 (191)
148 2yy0_A C-MYC-binding protein; 35.8 49 0.0017 24.5 4.4 6 386-391 45-50 (53)
149 1lhs_A Myoglobin; oxygen stora 35.4 27 0.00093 29.4 3.4 42 231-272 26-81 (153)
150 1jeb_A Hemoglobin zeta chain; 35.3 78 0.0027 26.0 6.2 42 231-272 27-76 (142)
151 4dnd_A Syntaxin-10, SYN10; str 35.3 1.4E+02 0.0047 25.6 7.8 23 347-369 106-128 (130)
152 3nmd_A CGMP dependent protein 35.2 1.2E+02 0.0042 24.0 6.8 13 347-359 48-60 (72)
153 3vkg_A Dynein heavy chain, cyt 34.6 2.3E+02 0.0079 36.0 12.2 58 334-391 2016-2073(3245)
154 3d1k_A Hemoglobin subunit alph 34.3 94 0.0032 25.7 6.5 42 231-272 26-76 (142)
155 3tnu_A Keratin, type I cytoske 34.1 2.1E+02 0.0071 24.0 8.9 14 301-314 13-26 (131)
156 1l8d_A DNA double-strand break 33.9 82 0.0028 25.2 5.9 9 361-369 32-40 (112)
157 2aze_B Transcription factor E2 33.4 53 0.0018 27.3 4.7 58 337-398 7-67 (106)
158 1a6m_A Myoglobin; heme protein 33.1 2.1E+02 0.0072 23.8 11.1 43 231-273 26-82 (151)
159 3etw_A Adhesin A; antiparallel 33.1 2.1E+02 0.0073 24.5 8.6 52 335-386 8-60 (119)
160 2a01_A Apolipoprotein A-I; fou 32.9 1.5E+02 0.0052 27.3 8.3 13 378-390 195-207 (243)
161 3bas_A Myosin heavy chain, str 32.9 1.8E+02 0.0063 23.0 10.8 26 362-387 58-83 (89)
162 3pp5_A BRK1, protein brick1; t 32.5 1.7E+02 0.0057 23.3 7.2 37 355-391 32-69 (73)
163 2xu6_A MDV1 coiled coil; prote 32.5 1.9E+02 0.0064 23.0 8.4 42 340-391 25-66 (72)
164 3trt_A Vimentin; cytoskeleton, 32.1 1.6E+02 0.0056 22.2 8.2 22 354-375 50-71 (77)
165 1ash_A Hemoglobin (OXY); oxyge 31.8 93 0.0032 27.0 6.3 44 231-274 28-84 (150)
166 3kqg_A Langerin, C-type lectin 31.6 52 0.0018 27.7 4.6 35 341-375 4-38 (182)
167 1d7m_A Cortexillin I; coiled-c 31.2 2.3E+02 0.0079 23.6 9.5 24 352-375 45-73 (101)
168 3bom_B Hemoglobin subunit beta 30.9 83 0.0028 26.4 5.7 41 231-271 25-79 (147)
169 3bom_A Hemoglobin subunit alph 30.7 1E+02 0.0035 25.5 6.2 53 231-293 27-88 (143)
170 1t3j_A Mitofusin 1; coiled coi 30.6 2.3E+02 0.0079 23.5 8.6 49 331-379 42-90 (96)
171 2r80_B Hemoglobin subunit beta 30.6 49 0.0017 27.6 4.1 41 231-271 25-79 (146)
172 2w72_C Human hemoglobin A; iro 30.3 64 0.0022 26.5 4.8 42 231-272 26-75 (141)
173 1m1j_B Fibrinogen beta chain; 30.2 4.7E+02 0.016 26.9 13.1 13 161-173 42-54 (464)
174 1kd8_B GABH BLL, GCN4 acid bas 30.1 88 0.003 21.9 4.6 30 335-364 4-33 (36)
175 1xq5_A Hemoglobin alpha-1 chai 29.9 61 0.0021 26.9 4.6 41 231-271 27-76 (143)
176 3d1k_B Hemoglobin subunit beta 29.8 80 0.0027 26.4 5.4 41 231-271 25-79 (146)
177 1q1f_A Neuroglobin; globin fol 29.5 1.1E+02 0.0036 25.1 6.0 43 231-273 25-82 (151)
178 3lss_A Seryl-tRNA synthetase; 29.4 2.8E+02 0.0096 28.6 10.3 25 355-379 113-137 (484)
179 2zs0_D Extracellular giant hem 29.4 2.4E+02 0.0082 23.6 8.3 58 231-295 33-97 (145)
180 1out_A Hemoglobin I; heme, oxy 29.2 1E+02 0.0035 25.6 6.0 41 231-271 27-76 (143)
181 4h22_A Leucine-rich repeat fli 29.2 2.6E+02 0.0088 23.6 9.2 31 278-314 16-46 (103)
182 2fzt_A Hypothetical protein TM 29.1 2.3E+02 0.0078 22.9 7.8 20 297-316 1-20 (79)
183 1fxk_A Prefoldin; archaeal pro 28.7 2.1E+02 0.0072 22.4 9.5 33 359-391 71-103 (107)
184 1out_B Hemoglobin I; heme, oxy 28.0 82 0.0028 26.4 5.1 41 231-271 25-79 (146)
185 1m1j_A Fibrinogen alpha subuni 27.9 5.4E+02 0.019 26.9 11.9 18 301-318 93-110 (491)
186 3lay_A Zinc resistance-associa 27.5 2.1E+02 0.0071 25.7 7.9 14 360-373 113-126 (175)
187 2pnv_A Small conductance calci 27.4 73 0.0025 22.9 4.0 27 357-383 13-39 (43)
188 2xzr_A Immunoglobulin-binding 27.3 2.8E+02 0.0097 23.4 11.7 44 340-383 63-106 (114)
189 1go4_E MAD1 (mitotic arrest de 27.0 82 0.0028 26.3 4.8 32 361-392 13-44 (100)
190 3qh9_A Liprin-beta-2; coiled-c 26.8 2.6E+02 0.0087 22.7 8.1 27 327-353 42-68 (81)
191 1gs9_A Apolipoprotein E, APOE4 26.7 3.3E+02 0.011 23.9 10.1 61 333-393 96-162 (165)
192 1g6u_A Domain swapped dimer; d 26.7 62 0.0021 23.4 3.4 26 368-393 21-46 (48)
193 4dk0_A Putative MACA; alpha-ha 26.6 2.6E+02 0.009 26.0 8.9 17 386-402 148-164 (369)
194 3qne_A Seryl-tRNA synthetase, 26.5 3.2E+02 0.011 28.3 10.0 22 355-376 80-101 (485)
195 3u59_A Tropomyosin beta chain; 26.4 2.5E+02 0.0087 22.5 13.4 20 321-340 12-31 (101)
196 1dip_A Delta-sleep-inducing pe 26.4 38 0.0013 27.3 2.5 29 354-382 16-44 (78)
197 1gd2_E Transcription factor PA 26.1 1.2E+02 0.004 23.7 5.3 8 340-347 33-40 (70)
198 1spg_A Hemoglobin; carbon mono 26.0 1.7E+02 0.006 24.2 6.8 54 231-294 27-90 (144)
199 2qyw_A Vesicle transport throu 26.0 2.6E+02 0.009 22.6 8.3 6 350-355 67-72 (102)
200 3gpv_A Transcriptional regulat 25.9 3E+02 0.01 23.2 9.3 28 276-304 53-80 (148)
201 3q8t_A Beclin-1; autophagy, AT 25.8 2.7E+02 0.0091 22.6 12.6 31 363-393 63-93 (96)
202 1cg5_A Protein (hemoglobin); o 25.5 98 0.0033 25.7 5.1 40 231-270 26-74 (141)
203 2zqm_A Prefoldin beta subunit 25.3 2.5E+02 0.0087 22.2 9.0 35 359-393 76-110 (117)
204 4dbg_B Ring finger protein 31; 25.2 1.7E+02 0.006 26.4 6.9 47 264-314 15-61 (162)
205 1v4x_B Hemoglobin beta chain; 24.9 85 0.0029 26.2 4.7 41 231-271 25-79 (146)
206 4e61_A Protein BIM1; EB1-like 24.8 1.3E+02 0.0045 25.4 5.7 36 341-376 6-41 (106)
207 3gxs_A Phenylacetate-coenzyme 24.7 30 0.001 27.4 1.7 31 217-250 5-35 (109)
208 2aa1_B Hemoglobin beta-C chain 24.5 96 0.0033 25.9 4.9 41 231-271 25-79 (146)
209 2iak_A Bullous pemphigoid anti 24.3 3E+02 0.01 24.1 8.4 27 230-256 51-77 (224)
210 2oif_A Horvu GLB1, non-legume 24.2 3E+02 0.01 22.7 10.8 67 231-305 34-117 (162)
211 1l8d_A DNA double-strand break 24.2 2.7E+02 0.0092 22.1 10.4 11 304-314 30-40 (112)
212 4hrt_A Globin-2 A chain; oxyge 24.1 1.5E+02 0.0051 24.8 6.1 42 231-272 35-87 (150)
213 4fla_A Regulation of nuclear P 24.0 3.7E+02 0.012 23.6 9.8 34 359-392 113-146 (152)
214 1fxk_C Protein (prefoldin); ar 24.0 2.4E+02 0.0081 23.2 7.2 15 281-295 32-46 (133)
215 2a3d_A Protein (de novo three- 24.0 83 0.0028 24.4 3.9 41 356-396 5-48 (73)
216 3swy_A Cyclic nucleotide-gated 23.9 2.1E+02 0.0073 20.8 6.9 11 363-373 33-43 (46)
217 2r80_A Hemoglobin subunit alph 23.8 98 0.0034 25.6 4.8 41 231-271 26-74 (141)
218 3caz_A BAR protein; thermo-aci 23.6 4.2E+02 0.014 25.0 9.4 14 360-373 149-162 (294)
219 2wy4_A Single domain haemoglob 23.5 2.9E+02 0.0098 22.2 12.1 43 232-274 26-71 (140)
220 1sfc_D Protein (SNAP-25B), pro 23.4 2.7E+02 0.0093 21.9 8.7 38 359-396 49-86 (87)
221 1gcv_B Hemoglobin; oxygen stor 23.4 1.4E+02 0.005 24.7 5.8 42 231-272 25-70 (136)
222 1cqx_A Flavohemoprotein; globi 23.0 1.5E+02 0.0051 28.3 6.5 43 231-273 26-71 (403)
223 3nr7_A DNA-binding protein H-N 23.0 2.7E+02 0.0093 22.4 7.1 10 299-308 25-34 (86)
224 1m1j_A Fibrinogen alpha subuni 22.8 6.7E+02 0.023 26.2 11.5 44 333-379 108-151 (491)
225 1et1_A Parathyroid hormone; he 22.0 75 0.0026 22.0 3.0 22 285-310 10-31 (34)
226 1l4a_D S-SNAP25 fusion protein 21.9 2.8E+02 0.0097 21.9 6.9 37 359-395 50-86 (87)
227 2vxg_A LD41624, GE-1, CG6181-P 21.7 54 0.0018 28.5 2.8 56 228-308 26-84 (139)
228 2akf_A Coronin-1A; coiled coil 21.7 95 0.0032 21.0 3.3 23 352-374 5-27 (32)
229 2dq3_A Seryl-tRNA synthetase; 21.6 1.3E+02 0.0043 30.2 5.9 23 355-377 77-99 (425)
230 3mkb_A Hemoglobin subunit alph 21.4 2.3E+02 0.008 23.6 6.8 54 231-294 26-87 (140)
231 2eqb_B RAB guanine nucleotide 21.4 3.5E+02 0.012 22.4 8.4 12 300-311 7-18 (97)
232 3htk_A Structural maintenance 21.3 2.3E+02 0.008 20.3 8.0 11 346-356 40-50 (60)
233 1c7c_A Protein (deoxyhemoglobi 21.2 1.6E+02 0.0054 27.2 6.1 41 231-271 168-216 (283)
234 2w72_B Human hemoglobin A; iro 21.1 2.5E+02 0.0087 23.1 6.9 62 231-302 25-102 (146)
235 1r8e_A Multidrug-efflux transp 21.0 2.4E+02 0.0081 25.3 7.1 24 277-301 44-67 (278)
236 3swf_A CGMP-gated cation chann 20.8 3.2E+02 0.011 21.7 7.2 11 364-374 36-46 (74)
237 2no2_A HIP-I, huntingtin-inter 20.8 3.6E+02 0.012 22.3 12.0 19 365-383 73-91 (107)
238 3a6m_A Protein GRPE, HSP-70 co 20.7 3.9 0.00013 37.0 -4.8 50 354-403 27-76 (177)
239 2ovc_A Potassium voltage-gated 20.6 97 0.0033 21.2 3.3 23 364-386 7-29 (33)
240 4b4y_A Neuroglobin; transport 20.3 55 0.0019 27.5 2.5 41 231-271 33-87 (154)
241 3a7p_A Autophagy protein 16; c 20.3 4.6E+02 0.016 23.4 9.3 23 333-355 69-91 (152)
242 1lwu_C Fibrinogen gamma chain; 20.2 2.2E+02 0.0076 27.9 7.2 11 362-372 42-52 (323)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.28 E-value=2 Score=43.24 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
.+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455665666666777777777777777777766665544444333
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.00 E-value=2.1 Score=42.26 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=40.7
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 015660 299 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 378 (403)
Q Consensus 299 KvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~ 378 (403)
...||+++|+|+.... .+++.+-..|-+.+-++..-||. +.+|-++.|++...+|+.....|.+++.+..+
T Consensus 398 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888776655 44445545566666666555554 44555555555555555555555555544443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.35 E-value=4.7 Score=34.71 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHhhhhH
Q 015660 361 SVAKTKARLSDLELESNRL 379 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l 379 (403)
++..+..++..++.....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.77 E-value=5.1 Score=34.92 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
..++...+|+...-++|...+.+.......+++.+.++..|+.+..+|+.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444555555555555555544443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.43 E-value=5.5 Score=34.73 Aligned_cols=47 Identities=26% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 015660 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess 377 (403)
+..+..++.++.+....+....+++.++++++.++..++++||.+..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677666667777777777777788888888888875543
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.07 E-value=4.1 Score=45.75 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv----~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
..+.+|+++.-+++....+|.++..++. .++.+++..|+.+...|.+.+.++.+.+.
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444434333333 34456666788888888887777775443
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=86.34 E-value=4 Score=42.19 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=17.7
Q ss_pred eEeccEEeeccchHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 015660 219 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ 271 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v-~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~ 271 (403)
|+-+||+++|..++.- ++=.++++--|-+|+.-++.|=++|=. =|.|-.+|.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~ 92 (464)
T 1m1j_B 40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL 92 (464)
T ss_dssp -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence 7789999999888775 444555555577777766655544422 366666665
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.16 E-value=14 Score=34.36 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess 377 (403)
.++.+||+..-......++++.+.-+++.+.++.+..++....
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444344444444444444444444433333333333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.04 E-value=4.8 Score=37.46 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
++....+++...+.++....+++.++......+...+..++.++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.84 E-value=13 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhhccH
Q 015660 256 RAYYLECLCSVVQELQSTSLMQMTK 280 (403)
Q Consensus 256 Rs~ym~~Ll~LIetL~~spl~eLS~ 280 (403)
=+.||+.|-.-...|.+.- ++|..
T Consensus 1894 P~syLeli~~y~~ll~~K~-~el~~ 1917 (3245)
T 3vkg_A 1894 PRHYLDFINQVVLLINEKR-DQLEE 1917 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3557777766666665554 44443
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.62 E-value=19 Score=30.33 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=3.0
Q ss_pred hhhhhhHH
Q 015660 300 VDWLRNIL 307 (403)
Q Consensus 300 vdWL~~KL 307 (403)
++.++.|+
T Consensus 50 ~edfk~Ky 57 (119)
T 3ol1_A 50 IMRLREKL 57 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.89 E-value=2.9 Score=41.92 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+..++.+|+...+++.+.+.++++++.++.++.++|.+.|..+.+|.-.+.++|.+|+=|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 344555666666667777777888888899999999999999999999999999887655
No 13
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.83 E-value=23 Score=30.67 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 015660 301 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 380 (403)
Q Consensus 301 dWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~ 380 (403)
.-|+..|....+.- ...+..-..|-+.+..++.-|++ +-++.++.+++++..|+.+...|.+++.+..+|.
T Consensus 28 ~lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~---ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 28 HLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444333 22233335566677777766665 3444466788888888888888888888888876
Q ss_pred HHHHHhhhh
Q 015660 381 QIIQATQSK 389 (403)
Q Consensus 381 ~~~~~~kSK 389 (403)
.-...+...
T Consensus 99 ~~~~~~~~r 107 (121)
T 3mq7_A 99 RENQVLSVR 107 (121)
T ss_dssp HHHHHHHHH
T ss_pred hhchhhhhH
Confidence 655544443
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.99 E-value=4.3 Score=45.63 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhhhHHHHHH
Q 015660 302 WLRNILNEIS 311 (403)
Q Consensus 302 WL~~KLeEV~ 311 (403)
.|+.+|.|+.
T Consensus 925 ~LE~kl~eLq 934 (1080)
T 2dfs_A 925 GLENKIMQLQ 934 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.68 E-value=20 Score=28.95 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=36.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 301 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 301 dWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
|=|+.||.|...-- ++.++.-+. +...++...++|+.++..|.+.+.++.. -|.-++++..+|+
T Consensus 10 DKLRrrl~E~~~q~-----qaEl~sLrr-T~~EL~~G~~KL~~mi~~l~~E~~~l~~---ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRA-----QAELNALKR-TEEDLKKGHQKLEEMVTRLDQEVAEVDK---NIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 55666776543322 233333222 3346666777888887777776666655 5566666666555
No 16
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.51 E-value=27 Score=32.91 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
..++..++.|+.++++.+++.+..+++.++.+++.++.+.+.+.....+.+..|.-+|.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 445555666777777788888877777888888888777776666555666666666654
No 17
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.01 E-value=23 Score=36.64 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=25.0
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+..++++++.+++++|..||.+...++..+..+=..+=+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445566677777777777777777766665554444443
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.15 E-value=9.3 Score=30.44 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
+..++.-|++..++|.+++..|+ +...+|.+.+. .|..+++.++||.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~-------eLEk~L~ekd~-------eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALID-------ELELELDQKDE-------LIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 44444555555555555554433 34444444443 3444777777774
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.84 E-value=6.7 Score=41.37 Aligned_cols=90 Identities=12% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 015660 263 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 342 (403)
Q Consensus 263 Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELE 342 (403)
|...|++|.+.- .+| ..--.++++....+. +=|+.++....+....+.++.. ..++.+..++++|.
T Consensus 62 ltkrINELKnqL-Edl-sKnsKdseqy~k~~~------E~Lr~rq~q~~dNdNtynE~S~------ELRRrIqyLKekVd 127 (562)
T 3ghg_A 62 FTNRINKLKNSL-FEY-QKNNKDSHSLTTNIM------EILRGDFSSANNRDNTYNRVSE------DLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHH-THH-HHHHHHHHHHHHHHH------HTTSSHHHHHHHHHHHHHHTTH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-HhhchhHHHHHHHHH------HHHHHHHHhhhccchhHHHHHH------HHHHHHHHHHHHHH
Confidence 334455554444 444 233344444444443 5566666666555543333331 12234444555555
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 015660 343 SQMNELALKEKEVAGLKESVAKTKARLSDLE 373 (403)
Q Consensus 343 e~leeL~~kekev~d~~~rv~e~k~RL~~LE 373 (403)
.++..|+.++. .|++..-.+.+||
T Consensus 128 nQlsnIrvLQs-------nLedq~~kIQRLE 151 (562)
T 3ghg_A 128 EKVQHIQLLQK-------NVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 55444433333 3334444445555
No 20
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.56 E-value=19 Score=36.63 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
.+.+.+...+|++++.+.|..+....++|..++..|..++.+...|.+.|..+..++.
T Consensus 79 ~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 79 IEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3444666677777777777777777777777887777777666666666666666554
No 21
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=73.27 E-value=4.9 Score=37.56 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
+++...+.++.+++.++.++++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556667777778888899999999999999999888888899998888887765
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.67 E-value=19 Score=36.13 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=20.5
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
+..++++.+++.++.+......++.+-+..++.++.++.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555555555555543
No 23
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=72.58 E-value=14 Score=38.27 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=23.6
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.++++++.+++++|.+||.+...++..+..+=..+=+.
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555667777777777777777766665554444443
No 24
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=72.34 E-value=32 Score=30.02 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.2
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHH---HHHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCN----------LESNSMR---AYYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----------lKs~~lR---s~ym~~Ll~LIetL~~sp 274 (403)
..+..++|+.|||+..=|. .+|+.|+ ...|..|..+|..|....
T Consensus 32 ~~fy~~LF~~~Pe~r~lF~~~~~v~~~d~~~s~~f~~q~~rl~~aL~~~v~~lDd~~ 88 (159)
T 2wtg_A 32 NAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLANVYTNEE 88 (159)
T ss_dssp HHHHHHHHHHCGGGGGGSTTCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHChhHHHHccCcccCCHHhhhcCHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3578999999999999998 5677664 567777777787776554
No 25
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=72.03 E-value=46 Score=28.38 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=12.1
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
..++..+..++.+...+|..++.....+..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (284)
T 1c1g_A 103 QERLATALQKLEEAEKAADESERGMKVIES 132 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333333
No 26
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.95 E-value=23 Score=37.34 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
-++.+++++|+-..||.+.++.++..++|+...-.=+..+.++.-.+.++|.++.-=+++|.
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 35666677777777777778888888888777767777777777778888888887777775
No 27
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=70.13 E-value=18 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 015660 368 RLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 402 (403)
Q Consensus 368 RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~l 402 (403)
.|.++|.+...-.+.+..+..|| |.+++|+|.|
T Consensus 80 ~lqe~ese~~~kkK~le~~~~kV--~mNk~LAe~F 112 (115)
T 3vem_A 80 KFHEVEAEHNTRTTKIEKDKNLV--IMNKLLANAF 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46777888888888888888888 5567777765
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.09 E-value=43 Score=27.21 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
+.++.+++.+|.+....=++|+.+...|..-+..+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666777666666667777777776666666665
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.87 E-value=38 Score=26.51 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=36.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
++++.++++.....+.+..+++..-..+.+.+. -|..+.-|+..||.+..+....+..+..|++.
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~-------ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLED-------ELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565544555555555554444444444 44555666666666666666666666666654
No 30
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.39 E-value=30 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 015660 267 VQELQSTSLMQMTKAKVKEMMAVLKDVESA 296 (403)
Q Consensus 267 IetL~~spl~eLS~~dL~ea~~~L~dL~~a 296 (403)
|.+|+... ..||.+++..+-..=.-|++-
T Consensus 8 VreLN~~L-~gls~eev~~lKq~RRtlKNR 36 (90)
T 2wt7_B 8 VRELNRHL-RGFTKDEVIRLKQKRRTLKNR 36 (90)
T ss_dssp HHHHHTTC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhhhh
Confidence 34555554 667777666555444444433
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=69.38 E-value=19 Score=40.52 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=8.2
Q ss_pred ccEEeeccchHHHH
Q 015660 222 GKYHVRASISSILQ 235 (403)
Q Consensus 222 nGfqVl~Sqv~~v~ 235 (403)
.||.++..+.++++
T Consensus 718 ~Gfp~R~~~~~F~~ 731 (1184)
T 1i84_S 718 QGFPNRIVFQEFRQ 731 (1184)
T ss_dssp HSCCEEEEHHHHHH
T ss_pred hcCcccccHHHHHH
Confidence 56666666655544
No 32
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=69.06 E-value=61 Score=28.58 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.8
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH--
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE-- 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~-- 294 (403)
..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|.... .|..+...|...=
T Consensus 46 ~~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~-------~l~~~l~~L~~~H~~ 118 (193)
T 2dc3_A 46 VAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD-------KVSSVLALVGKAHAL 118 (193)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHH
Confidence 47899999999999888864 5666655 57888888887775432 4556666665544
Q ss_pred hcCcchhhh
Q 015660 295 SAQIDVDWL 303 (403)
Q Consensus 295 ~agfKvdWL 303 (403)
..|++-+-.
T Consensus 119 ~~gV~p~~f 127 (193)
T 2dc3_A 119 KHKVEPVYF 127 (193)
T ss_dssp TSCCCHHHH
T ss_pred HcCCCHHHH
Confidence 346554433
No 33
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.92 E-value=11 Score=37.92 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 338 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 338 ~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..|+++..+.+...+.+++.....+.+++++|.+.++++.+|.-.+.+++-.|+=|
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 33333333344444444555556788888899999999999999999999877644
No 34
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=67.33 E-value=64 Score=28.22 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHhH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 325 AAKANCVNLLESTKKELESQMNELALK-EKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 325 ~~K~~~d~~~e~~~~ELEe~leeL~~k-ekev~d~~~rv---~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
+++..-+.+++..+++.+...++..++ +.+....++|. ..+..|...|.....=+...+..++.++..|.+
T Consensus 21 eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~ 95 (187)
T 3v6i_A 21 EAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQ 95 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 334444456666666555554333322 22233332332 445666666666666667777777777777754
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.41 E-value=29 Score=38.96 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.6
Q ss_pred ccEEee
Q 015660 222 GKYHVR 227 (403)
Q Consensus 222 nGfqVl 227 (403)
++|+|-
T Consensus 764 ~~~~iG 769 (1184)
T 1i84_S 764 NLYRIG 769 (1184)
T ss_dssp TTCCBC
T ss_pred cceeEc
Confidence 444443
No 36
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.83 E-value=64 Score=32.74 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=23.8
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.++++++.+++++|.+||.+...++..+..+=..+=+.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34456666777777777777777766665555554444
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.31 E-value=46 Score=35.24 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 015660 332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 367 (403)
Q Consensus 332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~ 367 (403)
..+..++.-|+.++.++.++|..|.- ++..|++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi---qirsCKg 163 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI---KIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccc
Confidence 34555666666666666666666665 6666654
No 38
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.10 E-value=26 Score=28.24 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 015660 312 EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 312 Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess 377 (403)
|..+++.-.-.+...|+-.-.+++++--|-+....||...+. -.+.+..|+.+||.+..
T Consensus 17 EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~-------~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 17 ENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ-------AKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 444555555555556554333444443333333333333333 33445555555555543
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.27 E-value=56 Score=26.12 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 303 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 303 L~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
|+.+++.+.-.+ +.++.+-++....++..+.+.|.++.-=...|.++..++.-+.+..--=..||.+...|..-
T Consensus 5 Lr~qi~~l~~e~------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555444 44555666666677777777777654444455555555555544444445566666666555
Q ss_pred HHHhh
Q 015660 383 IQATQ 387 (403)
Q Consensus 383 ~~~~k 387 (403)
|.++|
T Consensus 79 l~fLk 83 (86)
T 3swk_A 79 IAFLK 83 (86)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=62.12 E-value=36 Score=34.15 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=21.2
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.++++++.+++++|.+|+.+...++..+..+-..+=+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455566666666666666666655555444444333
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.52 E-value=91 Score=27.93 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=43.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 384 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~ 384 (403)
..+..+....+..+..+..+|+++-+.+.....|+..++-+...+.++|..|+.+...|=++.-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444556666666777776777777777777777778888888888888877755443
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.50 E-value=67 Score=31.64 Aligned_cols=38 Identities=3% Similarity=0.062 Sum_probs=22.0
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 353 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 353 kev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
..++..++++..++++=.+++.+..++...+..++-++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 33444455666666666666666666666665555544
No 43
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=60.99 E-value=22 Score=29.40 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=34.4
Q ss_pred hHHHHHHHhhcccccccCcc---cchhHH---HHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL---ESNSMR---AYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l---Ks~~lR---s~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.++ ..+|..|..+|..|...
T Consensus 28 ~~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 76 (147)
T 1jf3_A 28 KECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDE 76 (147)
T ss_dssp HHHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 56889999999999887764 456777 58999999998877544
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.27 E-value=67 Score=26.00 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHH
Q 015660 301 DWLRNILNEISEAIE 315 (403)
Q Consensus 301 dWL~~KLeEV~Eare 315 (403)
+=|+.|.....+.+.
T Consensus 9 eqLE~KIq~avdtI~ 23 (81)
T 2jee_A 9 EKLEAKVQQAIDTIT 23 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555554444443
No 45
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=59.68 E-value=72 Score=28.11 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660 340 ELESQMNELALKEKE-VAGLKESVAKTKARLSDLELESNRLEQ 381 (403)
Q Consensus 340 ELEe~leeL~~keke-v~d~~~rv~e~k~RL~~LE~ess~l~~ 381 (403)
.|.++|++.-+-+++ +.+.+.++.+.+..|.++..-..+|..
T Consensus 100 ~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 100 QLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 445555555666665555555555433
No 46
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=59.37 E-value=23 Score=29.37 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (147)
T 1mba_A 27 LDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANA 82 (147)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 46889999999999988853 4556666 5788888888877544
No 47
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.00 E-value=20 Score=35.31 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=11.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660 360 ESVAKTKARLSDLELESNRLEQIIQATQSK 389 (403)
Q Consensus 360 ~rv~e~k~RL~~LE~ess~l~~~~~~~kSK 389 (403)
++|..++..|..++....+|.+.|..+..+
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=58.65 E-value=25 Score=25.41 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=25.3
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 015660 351 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 384 (403)
Q Consensus 351 kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~ 384 (403)
.|..+++...+..+..+|++-|+.+..-|.|++.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3445555556888889999999988888877653
No 49
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.50 E-value=71 Score=25.70 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=45.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 328 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 328 ~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
|..++++.+....-..+|+-|.+-+.+..+=+.++.+|=.| |+.+...+.+.|..++-|-...
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~---l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTR---LDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777888888888888877777777554 5566677777888888776543
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.22 E-value=84 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=31.8
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660 315 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 357 (403)
Q Consensus 315 e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d 357 (403)
+-+-..++++.+|.+.-=.++.++..||++-+.+++...+-.+
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888887777788888888877777777666555
No 51
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=57.85 E-value=20 Score=30.11 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=32.6
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l---------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 88 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDN 88 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999998864 7888875 566777777766643
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.60 E-value=66 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSD 371 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~ 371 (403)
+..++......+.+.+.++....+++.+...+|..
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443344444444444444444444444433
No 53
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.34 E-value=18 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
+.....||+..+++|.+.+.||.+||.-.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566667778888888888888654
No 54
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=57.32 E-value=22 Score=29.76 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 28 ~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ldd 83 (152)
T 3pt8_B 28 TNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDNLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999888874 6777776 577777777766643
No 55
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=57.03 E-value=24 Score=36.63 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=20.2
Q ss_pred eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS 272 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~ 272 (403)
|+-+||+.+|..++....-.++-+==|-+|+.-++.|=++| =.=|+|-.+|.+
T Consensus 36 ~s~~~y~~~~~~~~~~~~~~~~~~pd~g~c~~~~~~fG~yC-PTtCglad~L~k 88 (461)
T 3ghg_B 36 ISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC-PTGCQLQEALLQ 88 (461)
T ss_dssp ----------------------CCCCCCCCBCSSTTTCBCE-ECHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCccccccccccCCCCCCccccCcccCCcC-CCcchHHHHHHh
Confidence 55689999999988877777766655888998888876644 233566666643
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.48 E-value=1.1e+02 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHh-HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 359 KES-VAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 359 ~~r-v~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.++ ..+++++|.+||.+...++..+..+=..+-+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444 56666666666666666666555444444443
No 57
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=55.51 E-value=51 Score=33.59 Aligned_cols=55 Identities=7% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
.-+.-.+||+|..+.+.-+......|.++++-|.........|.+.|..+..++.
T Consensus 82 ~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 82 ATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445666666666656555556666666555555555555555555555543
No 58
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=55.33 E-value=27 Score=28.98 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|...
T Consensus 29 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~ 80 (140)
T 2zs0_A 29 RDLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQ 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3688999999999987774 34677775 5667777777777543
No 59
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=54.84 E-value=1.1e+02 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 348 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 348 L~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
|...+.+.....+|......++.+|+.+...+..++.++...-+
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 33344444444556666666666666666666666655544433
No 60
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=54.58 E-value=1.2e+02 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=21.3
Q ss_pred hhccHHHHHHHHHHH--hHHHhcCcchhhhhhHHHHHHHH
Q 015660 276 MQMTKAKVKEMMAVL--KDVESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L--~dL~~agfKvdWL~~KLeEV~Ea 313 (403)
..|-.++|..=++++ ..+..+.=-+++|+.+|.-+.+.
T Consensus 30 ~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e 69 (216)
T 2lem_A 30 SQFESSSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRD 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555555554433332 33455555578888888775543
No 61
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=54.53 E-value=68 Score=28.30 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHhhhhHHHHHHHhhhhh
Q 015660 373 ELESNRLEQIIQATQSKV 390 (403)
Q Consensus 373 E~ess~l~~~~~~~kSKV 390 (403)
|...++|.+++..+|..+
T Consensus 147 e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 147 EEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666666666666654
No 62
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=54.22 E-value=6.3 Score=38.82 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 344 QMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 344 ~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
+|+||.+.|..|....+++..+++.|..++.+...|++.|..+..++..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667777777777777777777777777777777777666666666543
No 63
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=54.19 E-value=18 Score=30.31 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 28 ~~~y~rlF~~~P~~k~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 83 (152)
T 3pt8_A 28 QGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGHHHHTTSCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999888875 6777765 567777777766644
No 64
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=54.16 E-value=18 Score=30.58 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=33.4
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l--------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd 89 (152)
T 4hrt_B 37 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 89 (152)
T ss_dssp HHHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999998776664 7888777 488888888887754
No 65
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=53.41 E-value=1.5e+02 Score=28.04 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=15.5
Q ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHhhhhhh
Q 015660 362 VAKTKARLSDL-ELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 362 v~e~k~RL~~L-E~ess~l~~~~~~~kSKV~ 391 (403)
+.+++++|.-+ +.-.+++.+.+..++-++.
T Consensus 112 veelk~~L~Py~eelr~k~~~~leeLr~~l~ 142 (273)
T 3s84_A 112 VEELKGRLTPYADEFKVKIDQTVEELRRSLA 142 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555443 3444556666666665554
No 66
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.41 E-value=76 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
++++++.+++++|.+|+.+...++..+..+-..+=+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456777778888888888877777766655555444
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.62 E-value=89 Score=31.77 Aligned_cols=6 Identities=17% Similarity=-0.019 Sum_probs=2.7
Q ss_pred cccccc
Q 015660 241 YGDIAA 246 (403)
Q Consensus 241 HpDIAs 246 (403)
++|+..
T Consensus 41 DeDwG~ 46 (390)
T 1deq_A 41 DEDWNT 46 (390)
T ss_pred hhhccC
Confidence 344444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.59 E-value=63 Score=31.83 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.4
Q ss_pred hhhhhhHHH
Q 015660 300 VDWLRNILN 308 (403)
Q Consensus 300 vdWL~~KLe 308 (403)
+.|-++.|+
T Consensus 365 l~~~~~~le 373 (487)
T 3oja_A 365 LEQKKKALD 373 (487)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 69
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.46 E-value=86 Score=26.30 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 015660 301 DWLRNILNEISEAI 314 (403)
Q Consensus 301 dWL~~KLeEV~Ear 314 (403)
.|-+.|++++....
T Consensus 11 ~~y~~K~eel~~~~ 24 (129)
T 3tnu_B 11 SWYQTKYEELQQTA 24 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888776544
No 70
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=51.37 E-value=85 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhH----------HHHHHHH----HHHHHhhhhHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESV----------AKTKARL----SDLELESNRLEQIIQ 384 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv----------~e~k~RL----~~LE~ess~l~~~~~ 384 (403)
.++..++.++++++++.+.+.+...-..+. ..+..|| .+.|.++..|.+.+.
T Consensus 87 ~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 87 DLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555566666666555555542211111 2234444 455677777655443
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.04 E-value=1.1e+02 Score=25.72 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 353 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 353 kev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
..+.++.+|+.+..++...|...-.++...+..++..++-
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677777776666777777666666554
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=51.03 E-value=1.5e+02 Score=27.22 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHH--------HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH--
Q 015660 299 DVDWLRNILNEIS--------EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR-- 368 (403)
Q Consensus 299 KvdWL~~KLeEV~--------Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~R-- 368 (403)
.+.|.+.++.+.. |.-+|-..+..++.+=+ ..++...+.+......+.+..-++..|+.+.......
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 369 --LSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 369 --L~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
+..|+.+.+.|......++.+++...
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 73
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=50.95 E-value=23 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=34.6
Q ss_pred chHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 230 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 230 qv~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 36 g~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 91 (159)
T 1hlm_A 36 VADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDT 91 (159)
T ss_dssp HHHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357889999999999988865 5677776 788888888877755
No 74
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=50.35 E-value=48 Score=27.70 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=39.4
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 34 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H 99 (148)
T 1yhu_C 34 EEVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIP-------TLESMLDHLAGQH 99 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHH
Confidence 57899999999999888764 3666654 67788888887775533 3555555555443
No 75
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=50.22 E-value=1.4e+02 Score=26.74 Aligned_cols=16 Identities=6% Similarity=-0.126 Sum_probs=8.7
Q ss_pred eccchHHHHHHHhhcc
Q 015660 227 RASISSILQSIISRYG 242 (403)
Q Consensus 227 l~Sqv~~v~~IFeKHp 242 (403)
.+|+.+-|+..|.-|=
T Consensus 22 ~~s~~e~v~~~~~~y~ 37 (191)
T 1nfn_A 22 SGQRWELALGRFWDYL 37 (191)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 4566666666665443
No 76
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=49.68 E-value=36 Score=28.47 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l--------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~ 88 (150)
T 1sct_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDP 88 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57889999999999888863 5666664 6888888888777553
No 77
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=49.03 E-value=39 Score=28.22 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd 90 (149)
T 2lhb_A 35 VDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDD 90 (149)
T ss_dssp HHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47889999999999888852 4677764 578888888877754
No 78
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.86 E-value=1.5e+02 Score=26.50 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=11.4
Q ss_pred HHHHHhhhhHHHHHHHhhhhhh
Q 015660 370 SDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 370 ~~LE~ess~l~~~~~~~kSKV~ 391 (403)
..+|.....|...+.+....++
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 79
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=48.11 E-value=40 Score=28.12 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=38.6
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H 98 (147)
T 2zs0_C 33 QAVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPA-------VLNEQLAHLSAQH 98 (147)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHh
Confidence 5689999999999988774 33677776 46777777777765432 3445555554443
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.50 E-value=1.9e+02 Score=28.17 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH-----------HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 337 TKKELESQMNELALKEKEVAGLK-----------ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~-----------~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
+.++|.+-.+.|.+.+++..-+. .++..-..|+.+||.+.++|++.|.++..-|++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555556666666543332 2232334688899999999999998888877653
No 81
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=47.42 E-value=41 Score=27.93 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lR---s~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.|+ ...|+.|..+|..|...
T Consensus 31 ~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 82 (145)
T 1x9f_B 31 QAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQP 82 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56889999999999887753 355565 46788888888777543
No 82
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.68 E-value=1.1e+02 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 015660 365 TKARLSDLELESNRLEQII 383 (403)
Q Consensus 365 ~k~RL~~LE~ess~l~~~~ 383 (403)
...++..+|.+..-|..+|
T Consensus 77 ~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 83
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=46.39 E-value=2e+02 Score=27.28 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=6.5
Q ss_pred hhhHHHHHHHhhhhh
Q 015660 376 SNRLEQIIQATQSKV 390 (403)
Q Consensus 376 ss~l~~~~~~~kSKV 390 (403)
..+|.+.+..+|..+
T Consensus 105 r~kl~~~veelk~~L 119 (273)
T 3s84_A 105 KAKIDQNVEELKGRL 119 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHh
Confidence 334444444444443
No 84
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=46.22 E-value=50 Score=27.58 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=32.8
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lR---s~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|...
T Consensus 33 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 84 (149)
T 1yhu_D 33 QAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDP 84 (149)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 56889999999999887753 366677 46678888888877643
No 85
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=46.03 E-value=52 Score=27.50 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=30.4
Q ss_pred hHHHHHHHhhcccccccCccc---------chhHHH---HHHHHHHHHHHHH
Q 015660 231 SSILQSIISRYGDIAANCNLE---------SNSMRA---YYLECLCSVVQEL 270 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lK---------s~~lRs---~ym~~Ll~LIetL 270 (403)
..+..++|..||++-.-|... |+.++. ..|..|..+|..|
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l 76 (153)
T 2bk9_A 25 AAILTQFFNRFPSNLEKFPFRDVPLEELSGNARFRAHAGRIIRVFDESIQVL 76 (153)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhHHhcCcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999888743 556664 5677777777766
No 86
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.92 E-value=98 Score=30.97 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 015660 352 EKEVAGLKESVAKTKARLSDLELESNR 378 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ess~ 378 (403)
..+++++++++.++.+.|.+++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554443
No 87
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=45.87 E-value=2e+02 Score=28.91 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 015660 281 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 313 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ea 313 (403)
..|.++...+..+. .-|+++=|+.+++|+...
T Consensus 9 ~~~~~~~~~~~~~~-~~~~l~~~~~r~~el~~~ 40 (365)
T 1gqe_A 9 NRIQDLTERSDVLR-GYLDYDAKKERLEEVNAE 40 (365)
T ss_dssp HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Confidence 34444455555554 347778888888888653
No 88
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.79 E-value=1e+02 Score=25.11 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 015660 346 NELALKEKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 346 eeL~~kekev~d~~~rv~e~k~RL~~LE~ 374 (403)
++|..-.++|++..+.|...+.+|.+|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555555566655543
No 89
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.71 E-value=1.4e+02 Score=25.31 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=19.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~ 305 (403)
+-.+.+||..+ ..+..|.+.||-|+=.+.
T Consensus 39 R~Y~~~dl~~l-~~I~~lr~~G~sL~eIk~ 67 (142)
T 3gp4_A 39 RKFGAEDLRWI-LFTRQMRRAGLSIEALID 67 (142)
T ss_dssp BCBCHHHHHHH-HHHHHHHHTTCCHHHHHH
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHH
Confidence 56788888865 455667889997643333
No 90
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=45.26 E-value=29 Score=29.34 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=32.2
Q ss_pred hHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-l---------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..++.++|+.||++-.-|. + .|+.|+. ..|..|..+|..|...
T Consensus 18 ~~~l~rlF~~~P~tk~~F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~ 73 (137)
T 3lb2_A 18 QDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDC 73 (137)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHCHHHHHHhHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4688999999999988876 2 3577776 5677777777777553
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.24 E-value=1.7e+02 Score=29.86 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015660 334 LESTKKELESQMNELALKEKEV 355 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev 355 (403)
|+.++.-|+.++.++.++|..|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.09 E-value=2.2e+02 Score=28.82 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=4.7
Q ss_pred HHHHHHHHHhHH
Q 015660 282 KVKEMMAVLKDV 293 (403)
Q Consensus 282 dL~ea~~~L~dL 293 (403)
+|.++...|.+|
T Consensus 39 ~l~~LE~~l~el 50 (409)
T 1m1j_C 39 ELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 93
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=45.02 E-value=47 Score=30.27 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 364 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 57 ~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LL 96 (197)
T 1dkg_A 57 RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888888888888887775
No 94
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.89 E-value=1.3e+02 Score=24.93 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
.++.++++|+....||......+.....--..|..+|..++.+...|
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444433333344555555555554444
No 95
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=44.68 E-value=44 Score=27.52 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 31 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 82 (144)
T 1yhu_B 31 HFIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDDE 82 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 57889999999998877764 3566665 6888888888887653
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.65 E-value=2.2e+02 Score=29.44 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=9.6
Q ss_pred HhhhHHhHHHHHHHHHHHHHhh
Q 015660 355 VAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~es 376 (403)
++++++++.++.+.+.+++.+.
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 97
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.58 E-value=1.5e+02 Score=30.07 Aligned_cols=23 Identities=4% Similarity=0.203 Sum_probs=10.3
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhh
Q 015660 355 VAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess 377 (403)
++++++++.++.+.+.+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 98
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=44.43 E-value=1.3e+02 Score=24.64 Aligned_cols=69 Identities=6% Similarity=0.050 Sum_probs=43.8
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESA 296 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l---------Ks~~lRs---~ym~~Ll~LIetL~~spl~eL--S~~dL~ea~~~L~dL~~a 296 (403)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|....+..| .-.+|...+.. -
T Consensus 27 ~~fy~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~l~~~l~~L~~~H~~------~ 100 (153)
T 1gdj_A 27 HRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLEVTGVVVTDATLKNLGSVHVS------K 100 (153)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHCHhHHHhhhhccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhh------c
Confidence 57889999999999987763 3677754 478888888887765331122 23344444443 2
Q ss_pred Ccchhhhhh
Q 015660 297 QIDVDWLRN 305 (403)
Q Consensus 297 gfKvdWL~~ 305 (403)
|++-+|..-
T Consensus 101 gV~p~~f~~ 109 (153)
T 1gdj_A 101 GVADAHFPV 109 (153)
T ss_dssp TCCGGGHHH
T ss_pred CCCHHHHHH
Confidence 555555543
No 99
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=44.17 E-value=44 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..++.++|..||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 30 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 84 (148)
T 2vyw_A 30 VSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASN 84 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999887752 4555654 578888888876654
No 100
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=43.87 E-value=1.4e+02 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=32.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 23 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 77 (147)
T 2nrl_A 23 GLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGS 77 (147)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999998887754 6777765 578888888877654
No 101
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=43.78 E-value=44 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=38.1
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 36 ~~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H 101 (151)
T 1x9f_A 36 RAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTL-------VLQSHLGHLADQH 101 (151)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHh
Confidence 47899999999999877753 3777764 56777777776665432 3444444444443
No 102
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=43.73 E-value=30 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.2
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l--------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~ 88 (151)
T 1sct_B 36 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 88 (151)
T ss_dssp HHHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999998887762 5666654 677777777776654
No 103
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=43.70 E-value=39 Score=28.46 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..++.++|..||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 83 (147)
T 1h97_A 29 LGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISN 83 (147)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 57899999999999887752 3777764 566677776655543
No 104
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=43.67 E-value=51 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lR---s~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.|+ ...|..|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 80 (142)
T 2zs0_B 29 NRIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDDV 80 (142)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56899999999999887753 356555 45677777777776543
No 105
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=43.61 E-value=1.5e+02 Score=25.25 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=16.2
Q ss_pred cchHHHHHHHhhcccccccCcc
Q 015660 229 SISSILQSIISRYGDIAANCNL 250 (403)
Q Consensus 229 Sqv~~v~~IFeKHpDIAsnf~l 250 (403)
.-+..|+.++.||-.+-.++..
T Consensus 33 ~dl~~v~~ll~kh~~le~~i~~ 54 (216)
T 1u5p_A 33 KDLASVNNLLKKHQLLEADISA 54 (216)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999877666543
No 106
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=43.49 E-value=11 Score=29.65 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=24.7
Q ss_pred ceeEeccEEeeccchHHHHHHHhhcccccccCc
Q 015660 217 DSVSVGKYHVRASISSILQSIISRYGDIAANCN 249 (403)
Q Consensus 217 etv~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~ 249 (403)
+.+.|+|++|-|+.++ .++..||+++..+.
T Consensus 5 DmIiv~G~nv~P~eIE---~vl~~~p~v~~~~v 34 (109)
T 3lax_A 5 DMIILKGVNIFPIQIE---TILLQFKELGSDYL 34 (109)
T ss_dssp SCEEETTEEECHHHHH---HHHHTCTTEEEEEE
T ss_pred EEEEECCEEECHHHHH---HHHHhCCCcccceE
Confidence 3488999999999988 56889999976543
No 107
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.22 E-value=98 Score=26.38 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 015660 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 378 (403)
Q Consensus 331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~ 378 (403)
|..|+.++++++..-.+|.... .+.+..|..+++|+.+||.+...
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555554443 33344677777777777755544
No 108
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.16 E-value=1.5e+02 Score=25.13 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHhc
Q 015660 282 KVKEMMAVLKDVESA 296 (403)
Q Consensus 282 dL~ea~~~L~dL~~a 296 (403)
+|..+...-.+|+..
T Consensus 21 qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 21 QLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666643
No 109
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=43.14 E-value=1.1e+02 Score=23.53 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=3.1
Q ss_pred hhhhhH
Q 015660 301 DWLRNI 306 (403)
Q Consensus 301 dWL~~K 306 (403)
+||..+
T Consensus 16 ~WL~e~ 21 (118)
T 3uul_A 16 TWLLSA 21 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566543
No 110
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=43.02 E-value=15 Score=30.90 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.5
Q ss_pred chHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 230 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 230 qv~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
-..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~ 91 (158)
T 1hlb_A 36 VTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS 91 (158)
T ss_dssp HHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCc
Confidence 357899999999999888865 6777776 677777777766644
No 111
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.82 E-value=82 Score=26.35 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=18.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
+-.+.+||..+. .+..|++.||-|+
T Consensus 37 R~Y~~~dl~~l~-~I~~lr~~G~sl~ 61 (135)
T 1q06_A 37 RTYTQQHLNELT-LLRQARQVGFNLE 61 (135)
T ss_dssp EECCHHHHHHHH-HHHHHHHTTCCHH
T ss_pred eeeCHHHHHHHH-HHHHHHHCCCCHH
Confidence 457888887554 4556788998876
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.54 E-value=1.3e+02 Score=24.23 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 015660 280 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 359 (403)
Q Consensus 280 ~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~ 359 (403)
++.|+.=+..|..|+...= =|+.++.++..... . .-....+..|..+++.|+....+-++.+.+++.+.
T Consensus 15 NdRlAsyIdKVR~LEqqN~---~Le~~i~~l~~~~~-----~---~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNK---ILLAELEQLKGQGK-----S---RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccC-----C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777766652 23445444332110 0 01122344555566666666566666666666655
Q ss_pred HhHHHHHHHH
Q 015660 360 ESVAKTKARL 369 (403)
Q Consensus 360 ~rv~e~k~RL 369 (403)
..+.+++.||
T Consensus 84 ~~~~~~k~KL 93 (93)
T 3s4r_A 84 EDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 5555555554
No 113
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.30 E-value=26 Score=25.96 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=7.4
Q ss_pred HhhhHHhHHHHHHHHH
Q 015660 355 VAGLKESVAKTKARLS 370 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~ 370 (403)
+..+.+++.+.+.||.
T Consensus 35 ~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 35 YEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333345555555554
No 114
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=42.01 E-value=78 Score=24.45 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=15.3
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 015660 287 MAVLKDVESAQIDVDWLRNILNEISEAIEF 316 (403)
Q Consensus 287 ~~~L~dL~~agfKvdWL~~KLeEV~Eare~ 316 (403)
...+..|+.+|| -|+||.+....
T Consensus 6 L~~I~~lr~lGf-------sL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLGF-------SLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTTC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-------CHHHHHHHHHH
Confidence 345666777776 38888777754
No 115
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=41.67 E-value=1.1e+02 Score=26.93 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.6
Q ss_pred HHHHHhcch
Q 015660 266 VVQELQSTS 274 (403)
Q Consensus 266 LIetL~~sp 274 (403)
.++.|+++.
T Consensus 30 ~ve~l~~se 38 (185)
T 3r2p_A 30 YVSQFEGSA 38 (185)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 345555554
No 116
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.16 E-value=1.4e+02 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh
Q 015660 366 KARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 366 k~RL~~LE~ess~l~~~~~~~k 387 (403)
+..|.+||....+..+.|..|+
T Consensus 57 ~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444443
No 117
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.98 E-value=1.6e+02 Score=24.71 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
+...+.+|+..+.+|.....+..+ +..++...-..|+.+...|.+-|.++-
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee---~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEE---MNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666666544444443 444444444445555555555555443
No 118
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=40.79 E-value=54 Score=27.36 Aligned_cols=42 Identities=10% Similarity=0.302 Sum_probs=31.7
Q ss_pred hHHHHHHHhhcccccccCc-c-------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCN-L-------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-l-------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|..||++-.-|. + .|+.++. ..|..|..+|..|..
T Consensus 34 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd 86 (146)
T 3g46_A 34 VALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDN 86 (146)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999999999987776 3 4666655 577888888877744
No 119
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.77 E-value=1.8e+02 Score=27.76 Aligned_cols=57 Identities=14% Similarity=0.373 Sum_probs=30.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 321 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
.++...|.-+...|. ||..+++.|..+++-+.+ ||+.||+..+.|+..|..++.+++
T Consensus 166 elL~IRK~ma~sEI~----EID~KI~~L~~mR~~vl~----------RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 166 EFLNIQKNSTLSEIR----DIEVEVENLRQKKEKLLG----------KIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555554433333 334444445444444443 666666666666666666666554
No 120
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=40.59 E-value=1.5e+02 Score=24.21 Aligned_cols=44 Identities=2% Similarity=0.138 Sum_probs=28.8
Q ss_pred hHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lKs~~l---Rs~ym~~Ll~LIetL~~sp 274 (403)
..+..++|+.||++..-|.--|+.+ ....+..|..+|..|....
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~v~~ld~~~ 72 (146)
T 2vhb_A 26 TTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLP 72 (146)
T ss_dssp HHHHHHHHHHCGGGGGGC--------CCCCCHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHChHHHHhcCcchhhhhHHHHHHHHHHHHHHHhccChH
Confidence 3577889999999999887644433 2467788888888776543
No 121
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.41 E-value=42 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 359 KESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
..+|++...+...||.+..+|...+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3355555666666666666665544
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=40.37 E-value=2.2e+02 Score=28.43 Aligned_cols=46 Identities=15% Similarity=-0.016 Sum_probs=24.9
Q ss_pred eEeccEEeeccchHHHHHHHhhccccc---ccCcccchhHHHHHHHHHHHHH
Q 015660 219 VSVGKYHVRASISSILQSIISRYGDIA---ANCNLESNSMRAYYLECLCSVV 267 (403)
Q Consensus 219 v~VnGfqVl~Sqv~~v~~IFeKHpDIA---snf~lKs~~lRs~ym~~Ll~LI 267 (403)
+.|||=.|.. ..++.++....+|. .++.+-++..|..||+.+++..
T Consensus 129 ~~ing~~v~~---~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~ 177 (517)
T 4ad8_A 129 ARLSGEVVSV---RELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKE 177 (517)
T ss_dssp EESSSSBCCH---HHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHH
T ss_pred EEECCEECCH---HHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcc
Confidence 6777765542 23444444433331 1233347777777777666554
No 123
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=40.08 E-value=37 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (142)
T 1b0b_A 26 PEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDN 81 (142)
T ss_dssp HHHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 46889999999999887765 3555664 567777777765543
No 124
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.80 E-value=2e+02 Score=25.57 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
|+..++.+|.+.+.-...+..-+..+|.=|.+.
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555544444444455555544443
No 125
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=39.65 E-value=1.8e+02 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhHHh---HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660 342 ESQMNELALKEKEVAGLKES---VAKTKARLSDLELESNRLEQIIQATQSKVTKFS 394 (403)
Q Consensus 342 Ee~leeL~~kekev~d~~~r---v~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~ 394 (403)
+++.+.+.+++.+|...+.. =.++.+-+..++.....|...|..-..+|+.|.
T Consensus 47 ~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 47 EQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554443221 156788888888888999999999999999994
No 126
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=39.56 E-value=35 Score=28.16 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----------lKs~~lRs---~ym~~Ll~LIetL~ 271 (403)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 80 (141)
T 1ith_A 27 DSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Confidence 4688999999999988776 33676665 56677777776664
No 127
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=39.14 E-value=71 Score=26.88 Aligned_cols=42 Identities=5% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ldd 83 (152)
T 1x3k_A 29 NTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGN 83 (152)
T ss_dssp HHHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47889999999999888862 3666665 455556566666643
No 128
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=39.00 E-value=4.9 Score=27.66 Aligned_cols=7 Identities=57% Similarity=1.644 Sum_probs=6.0
Q ss_pred CchhhhH
Q 015660 17 NPYHECG 23 (403)
Q Consensus 17 NP~H~C~ 23 (403)
-|||||+
T Consensus 7 rpfheca 13 (36)
T 2jyp_A 7 RPFHECA 13 (36)
T ss_dssp TTTTCCS
T ss_pred Cccchhe
Confidence 5999996
No 129
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=38.71 E-value=1.3e+02 Score=23.03 Aligned_cols=6 Identities=33% Similarity=0.922 Sum_probs=3.4
Q ss_pred hhhhhH
Q 015660 301 DWLRNI 306 (403)
Q Consensus 301 dWL~~K 306 (403)
+||..+
T Consensus 16 ~WL~~~ 21 (119)
T 3uun_A 16 SWLLSA 21 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.32 E-value=1.2e+02 Score=28.14 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 328 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 328 ~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
++.+.++..+-.|..-.-++|..+..|++.+++++...++.....+...++-..+
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~ 70 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN 70 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 4445566666666655556666677777777777777766666655544443333
No 131
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=38.27 E-value=1.8e+02 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.0
Q ss_pred CcchhhhhhHHHH
Q 015660 297 QIDVDWLRNILNE 309 (403)
Q Consensus 297 gfKvdWL~~KLeE 309 (403)
++.++=++.|+..
T Consensus 16 ~~E~e~~k~K~~~ 28 (111)
T 2v66_B 16 KYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 132
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.09 E-value=2e+02 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
+..+..-+|+-++....+...+...+-+|+..
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~e 105 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAE 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444444444444443
No 133
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=38.03 E-value=62 Score=27.09 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-l---------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..+..++|+.||++-.-|. + .|+.+|. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 25 VEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999887775 1 4555554 57888888888776
No 134
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.58 E-value=1.6e+02 Score=23.85 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=6.4
Q ss_pred hHHHHHHhhHHHHHHH
Q 015660 322 TIDAAKANCVNLLEST 337 (403)
Q Consensus 322 ~~e~~K~~~d~~~e~~ 337 (403)
+++.++++.....+.+
T Consensus 13 ~lk~e~e~a~drae~~ 28 (101)
T 3u1c_A 13 MLKLDKENALDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444443333333
No 135
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=37.53 E-value=1.7e+02 Score=24.88 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred hHHHHHHHhhcccccccCcccc-----hhHHH---HHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCNLES-----NSMRA---YYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lKs-----~~lRs---~ym~~Ll~LIetL~~sp 274 (403)
..+..++|+.||++-.=|.... +.+|. ..|++|-.+|..|..+.
T Consensus 28 ~~~f~rLF~~~P~~k~lF~~~~~~~~~~~~~~Ha~rv~~~l~~~V~~Ldd~~ 79 (161)
T 3mvc_A 28 ISIFRNSFFKNPEIRQMIMFGTKNEGHERLKKHAQLFTVLMDDLIANLDSPS 79 (161)
T ss_dssp HHHHHHHHHHCHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhChhHHHHhccCcccCCcHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5789999999999877765422 22332 57788888888776544
No 136
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.45 E-value=1.3e+02 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=9.0
Q ss_pred hccHHHHHHHHHHHhHHH
Q 015660 277 QMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 277 eLS~~dL~ea~~~L~dL~ 294 (403)
.|=+..|..|...|.+-+
T Consensus 28 ~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554433
No 137
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=37.24 E-value=60 Score=27.10 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..++.++|+.||++-.-|. ..|+.|+. ..|+.|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 80 (145)
T 1yhu_A 29 DALWRNVFNYAPNARDIFESVNSKDMASPEFKAHIARVLGGLDRVISMLDNQ 80 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHcCHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4788999999999877664 23566654 5677777777666543
No 138
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=37.12 E-value=82 Score=25.39 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~sp 274 (403)
..+..++|+.||++-.-|.-....=....|..|..+|..|....
T Consensus 25 ~~fy~rlf~~~P~~k~~F~~d~~~h~~~l~~al~~~v~~ld~~~ 68 (131)
T 3ubc_A 25 LLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLE 68 (131)
T ss_dssp HHHHHHHHHHCGGGGGGCCSCHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHhChHHHHHccccHHHHHHHHHHHHHHHHHhCCChH
Confidence 35688999999999888876433345567888888887775544
No 139
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.77 E-value=44 Score=29.40 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELA 349 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~ 349 (403)
..+..+..|+.++++|.
T Consensus 64 ~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555555553
No 140
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=36.73 E-value=73 Score=26.14 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.- .|+.|+. ..|+.|..+|..|...
T Consensus 29 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~ 80 (140)
T 1x9f_D 29 LELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTP 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 46889999999999887753 3566664 5788888888777543
No 141
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=36.60 E-value=71 Score=26.46 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=33.4
Q ss_pred hHHHHHHHhhcccccccCcc----c------chhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL----E------SNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l----K------s~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- . |+.++. ..|+.|..+|..|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGV 81 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccC
Confidence 88999999999999888862 1 555654 678888888888866
No 142
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.51 E-value=1.4e+02 Score=22.54 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=24.7
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKV 390 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV 390 (403)
-+|..+.+-..+|..||.+-++++..+.-+++|+
T Consensus 21 hLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 21 NLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 3344455667788888888888888887777763
No 143
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=36.48 E-value=56 Score=27.41 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H 102 (153)
T 1x9f_C 37 RLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPP-------ALDAALDHLAHQH 102 (153)
T ss_dssp HHHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhh
Confidence 5789999999999877664 34666663 45777777777665433 3445555454443
No 144
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.35 E-value=1.3e+02 Score=22.48 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=21.4
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 350 LKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 350 ~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
..+.++.++..+-.+++.++..|+.+..-|.+.|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566677777777777777766544
No 145
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=36.03 E-value=1.3e+02 Score=23.95 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 347 ELALKEKEVAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 347 eL~~kekev~d~~~rv-~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
-+..--..+.++=.++ ..|+.||..|+.+...|+..|..+..||..
T Consensus 24 ~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 24 IITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445556665666 458999999999999999999999999865
No 146
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=35.98 E-value=37 Score=27.58 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=43.1
Q ss_pred hHHHHHHHhhcccccccCcc-------cchhHH---HHHHHHHHHHHHHHhcchhhhc-cHHHHHHHHHHHhHHHhcCcc
Q 015660 231 SSILQSIISRYGDIAANCNL-------ESNSMR---AYYLECLCSVVQELQSTSLMQM-TKAKVKEMMAVLKDVESAQID 299 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-------Ks~~lR---s~ym~~Ll~LIetL~~spl~eL-S~~dL~ea~~~L~dL~~agfK 299 (403)
..+..++|+.||++..-|.- .|+.++ ...|..|..+|..|.... .+ ....|...+.. .|++
T Consensus 27 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~~~~~~~l~~~H~~------~gv~ 98 (143)
T 1bin_A 27 VVFYTSILEKAPAAKDLFSFLANGVDPTNPKLTGHAEKLFALVRDSAGQLKASG--TVVADAALGSVHAQ------KAVT 98 (143)
T ss_dssp HHHHHHHHHHCTTHHHHSGGGTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHS--CCCCCHHHHHHHTT------TTCC
T ss_pred HHHHHHHHHHChHHHHHhHhcccCccccCHHHHHHHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHHh------cCCC
Confidence 35677999999999987765 577774 457888888888887544 11 11115554442 3666
Q ss_pred hhhhhhH
Q 015660 300 VDWLRNI 306 (403)
Q Consensus 300 vdWL~~K 306 (403)
-+|..--
T Consensus 99 p~~f~~~ 105 (143)
T 1bin_A 99 DPQFVVV 105 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 147
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.93 E-value=95 Score=27.90 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhh
Q 015660 374 LESNRLEQIIQATQSKV 390 (403)
Q Consensus 374 ~ess~l~~~~~~~kSKV 390 (403)
...++|.+.+..++.++
T Consensus 165 elk~~l~~~veel~~~L 181 (191)
T 1nfn_A 165 GAREGAERGLSAIRERL 181 (191)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444444
No 148
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.83 E-value=49 Score=24.48 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.3
Q ss_pred hhhhhh
Q 015660 386 TQSKVT 391 (403)
Q Consensus 386 ~kSKV~ 391 (403)
+++|+.
T Consensus 45 l~~~l~ 50 (53)
T 2yy0_A 45 LKAKLA 50 (53)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 333433
No 149
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=35.43 E-value=27 Score=29.45 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----l-------Ks~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 81 (153)
T 1lhs_A 26 QEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNN 81 (153)
T ss_dssp HHHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 5788999999999888776 3 6777776 678888888876654
No 150
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=35.31 E-value=78 Score=26.03 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHH---HHHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCN-----LESNSMR---AYYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-----lKs~~lR---s~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|. ..|+.|+ ...|+.|..+|.-|..
T Consensus 27 ~~~y~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~ 76 (142)
T 1jeb_A 27 TETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDD 76 (142)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3788999999999988776 3466676 4678888888876644
No 151
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.28 E-value=1.4e+02 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHH
Q 015660 347 ELALKEKEVAGLKESVAKTKARL 369 (403)
Q Consensus 347 eL~~kekev~d~~~rv~e~k~RL 369 (403)
||.....-|.+++.+|.+|+..|
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666666554
No 152
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.16 E-value=1.2e+02 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhH
Q 015660 347 ELALKEKEVAGLK 359 (403)
Q Consensus 347 eL~~kekev~d~~ 359 (403)
+|.+++.+|.+++
T Consensus 48 ~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 48 ELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.60 E-value=2.3e+02 Score=35.98 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
+..+.+++++..+.|.+++.+++++.+++.+.++.+.++-.+-.+|+..+...+.|+.
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555554444444444444444444443
No 154
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=34.28 E-value=94 Score=25.66 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~ 76 (142)
T 3d1k_A 26 NDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDD 76 (142)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3678999999999876664 34677776 577777777766643
No 155
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.10 E-value=2.1e+02 Score=24.01 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 015660 301 DWLRNILNEISEAI 314 (403)
Q Consensus 301 dWL~~KLeEV~Ear 314 (403)
.|-+.|++++....
T Consensus 13 ~~y~~K~eel~~~~ 26 (131)
T 3tnu_A 13 EWFFTKTEELNREV 26 (131)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888776544
No 156
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.94 E-value=82 Score=25.23 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 015660 361 SVAKTKARL 369 (403)
Q Consensus 361 rv~e~k~RL 369 (403)
++...+..|
T Consensus 32 ~i~~l~~~l 40 (112)
T 1l8d_A 32 KIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.44 E-value=53 Score=27.35 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH---HHHHhhhhhhhccccch
Q 015660 337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ---IIQATQSKVTKFSQKSL 398 (403)
Q Consensus 337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~---~~~~~kSKV~kf~~kSl 398 (403)
..+.|..++++|.+.|+++.+ .+..+...|.++-.......- |-.++++ +..|.+.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~---~i~~~~~~l~~lted~~n~~~aYVT~~Di~~-i~~f~~qtv 67 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDH---LMNICTTQLRLLSEDTDSQRLAYVTCQDLRS-IADPAEQMV 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHHHHCEEEHHHHHT-TSCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccceecHHHHhc-CcCCCcCeE
Confidence 344666677778888888777 677777778777754322110 1134444 555666554
No 158
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=33.15 E-value=2.1e+02 Score=23.79 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~~s 273 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~ 82 (151)
T 1a6m_A 26 QDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHH 82 (151)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCH
Confidence 57889999999998877742 4556665 5788888888777653
No 159
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.14 E-value=2.1e+02 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHh
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESV-AKTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv-~e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
+...+.||.++.-|.+++.+.=..+..+ +.-..+|..+..+...++.++..+
T Consensus 8 ~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i 60 (119)
T 3etw_A 8 VGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRL 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666533322233 333566666666666666655444
No 160
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.87 E-value=1.5e+02 Score=27.26 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=5.7
Q ss_pred hHHHHHHHhhhhh
Q 015660 378 RLEQIIQATQSKV 390 (403)
Q Consensus 378 ~l~~~~~~~kSKV 390 (403)
+|...+..++.|+
T Consensus 195 kl~~~~e~lr~~l 207 (243)
T 2a01_A 195 KATEHLSTLSEKA 207 (243)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 161
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.86 E-value=1.8e+02 Score=23.02 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhh
Q 015660 362 VAKTKARLSDLELESNRLEQIIQATQ 387 (403)
Q Consensus 362 v~e~k~RL~~LE~ess~l~~~~~~~k 387 (403)
..+..+|..+|...-..|+..|..+.
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433344444444443
No 162
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.54 E-value=1.7e+02 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.4
Q ss_pred HhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 355 VAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 355 v~d~~~rv-~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
+.++=.++ .-|+.||..|+.+...|+.++..+..||.
T Consensus 32 ~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 32 IVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455 34778888888888888888888888774
No 163
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.54 E-value=1.9e+02 Score=23.00 Aligned_cols=42 Identities=17% Similarity=0.431 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
||.-+++.|..+.+-+-+ ||+.||+.-+.|+..+..+..+++
T Consensus 25 EID~Ki~nL~~mR~ivld----------RlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 25 DIEVEVENLRQKKEKLLG----------KIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455555666666665555 888999999999888888887765
No 164
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.13 E-value=1.6e+02 Score=22.20 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=10.5
Q ss_pred HHhhhHHhHHHHHHHHHHHHHh
Q 015660 354 EVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~e 375 (403)
++...+..|.+++-.+..|+.+
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444
No 165
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=31.78 E-value=93 Score=27.01 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.2
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHhcch
Q 015660 231 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQSTS 274 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----------lKs~~lRs---~ym~~Ll~LIetL~~sp 274 (403)
..+.+.+|+.|||+..=|. .+|+.|+. ..|+.|..+|..|....
T Consensus 28 ~~fy~~LF~~~Pe~r~~F~~~~~~~~~d~~~s~~f~~q~~rl~~aL~~~i~~lDd~~ 84 (150)
T 1ash_A 28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE 84 (150)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHChhHHHHhhhcccCChhhhhcCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3678899999999999885 33676655 46666666666665444
No 166
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=31.56 E-value=52 Score=27.69 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660 341 LESQMNELALKEKEVAGLKESVAKTKARLSDLELE 375 (403)
Q Consensus 341 LEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e 375 (403)
|..++..|++....+..+..++.+++.+|.++...
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666543
No 167
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.16 E-value=2.3e+02 Score=23.61 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=11.2
Q ss_pred HHHHhhhHHhHHHH-----HHHHHHHHHh
Q 015660 352 EKEVAGLKESVAKT-----KARLSDLELE 375 (403)
Q Consensus 352 ekev~d~~~rv~e~-----k~RL~~LE~e 375 (403)
++.+.++..|+.+. -+||.+|+++
T Consensus 45 ~~~i~el~akidd~Lk~l~~EklAkldLE 73 (101)
T 1d7m_A 45 EKRLRELEAKLDETLKNLELEKLARMELE 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33344444455443 3455555544
No 168
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=30.90 E-value=83 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (147)
T 3bom_B 25 PQALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLD 79 (147)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 4566655 56677777766553
No 169
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=30.74 E-value=1e+02 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=35.4
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH
Q 015660 231 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 293 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~------lKs~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL 293 (403)
..+..++|+.||++-.-|. ..|+.+|. ..|+.|..+|..|.. |..+...|...
T Consensus 27 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~ 88 (143)
T 3bom_A 27 EQALSRMLVVYPQTKAYFSHWASVAPGSAPVKKHGITIMNQIDDCVGHMDD----------LFGFLTKLSEL 88 (143)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSSCCSTTCHHHHHHHHHHHHHHHHHHTTTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHH
Confidence 3678999999999877664 34677776 567777777755532 45555555544
No 170
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.63 E-value=2.3e+02 Score=23.48 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
...+....++|+.+++.|..+-..+..+..+..-++.+-..|+.+..+-
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3466667777777666666666666666556666666655555554443
No 171
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=30.61 E-value=49 Score=27.58 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld 79 (146)
T 2r80_B 25 AEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 5666665 47777777776664
No 172
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=30.30 E-value=64 Score=26.52 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-----lKs~~lRs---~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|. ..|+.++. ..|..|..+|..|..
T Consensus 26 ~~~y~rlF~~~P~~~~~F~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~ 75 (141)
T 2w72_C 26 AEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVDD 75 (141)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4788999999999988776 34566654 777788887776643
No 173
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.15 E-value=4.7e+02 Score=26.93 Aligned_cols=13 Identities=0% Similarity=-0.209 Sum_probs=0.0
Q ss_pred CCCCCCccccccc
Q 015660 161 NGKDNKVQAPIEI 173 (403)
Q Consensus 161 ~~~~~~~~~~~p~ 173 (403)
+|--++-+++.|.
T Consensus 42 ~~~~~~~~~~~~~ 54 (464)
T 1m1j_B 42 GTGYQPRPPKQDK 54 (464)
T ss_dssp -------------
T ss_pred CCCcCCCCCCCcc
Confidence 4445555555553
No 174
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.15 E-value=88 Score=21.93 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q 015660 335 ESTKKELESQMNELALKEKEVAGLKESVAK 364 (403)
Q Consensus 335 e~~~~ELEe~leeL~~kekev~d~~~rv~e 364 (403)
..++.++|+.+.+....+.+|.-+++-+.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 333344444444444444444444443333
No 175
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=29.86 E-value=61 Score=26.92 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~d~~~~n~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1xq5_A 27 SDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASID 76 (143)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 37889999999999877753 4777765 57777777776554
No 176
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=29.85 E-value=80 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----l-------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 3d1k_B 25 PKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCHHHHHHHHHHHHHTHHHHHTGG
T ss_pred HHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999987775 3 3566665 47777777776553
No 177
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=29.45 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=31.6
Q ss_pred hHHHHHHHhhcccccccCccc------------chhHH---HHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNLE------------SNSMR---AYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lK------------s~~lR---s~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|... |+.++ ...|..|..+|..|...
T Consensus 25 ~~~y~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (151)
T 1q1f_A 25 TVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDL 82 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHChHHHHhCCccccccccHHHHhhChHHHHHHHHHHHHHHHHHHhcCCH
Confidence 478899999999999988753 33344 35677777777777654
No 178
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.43 E-value=2.8e+02 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.2
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 355 VAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
++++++++.++.+.+.+++.+...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777776665543
No 179
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=29.37 E-value=2.4e+02 Score=23.62 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=36.8
Q ss_pred hHHHHHHHhhcccccccCc----ccchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 015660 231 SSILQSIISRYGDIAANCN----LESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 295 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~----lKs~~lRs~---ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~ 295 (403)
..++.++|+.||++-.-|. ..|+.++.- .|..|..+|..|... +.|..+...|...=.
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~aH~~~v~~~l~~~v~~ldd~-------~~l~~~l~~L~~~H~ 97 (145)
T 2zs0_D 33 VAIFDVFFTSSGVSPSMFPGGGDSSSAEFLAQVSRVISGADIAINSLTNR-------ATCDSLLSHLNAQHK 97 (145)
T ss_dssp HHHHHHHHHHHCCCGGGSGGGGCTTSHHHHHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHhc
Confidence 5789999999999988774 457777654 445555555555432 235555555554443
No 180
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=29.21 E-value=1e+02 Score=25.63 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=29.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|...|.-|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1out_A 27 AEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMD 76 (143)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57889999999998866643 4566654 66777777776553
No 181
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.17 E-value=2.6e+02 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 278 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 278 LS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
+|+..|.+=-++|.|- ||-|+.+|+|.-|..
T Consensus 16 VsnAQLDNEKsal~Yq------VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQ------VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3455566666666664 699999999888776
No 182
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=29.08 E-value=2.3e+02 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=11.4
Q ss_pred CcchhhhhhHHHHHHHHHHh
Q 015660 297 QIDVDWLRNILNEISEAIEF 316 (403)
Q Consensus 297 gfKvdWL~~KLeEV~Eare~ 316 (403)
|..++=++++.++.-|.-.|
T Consensus 1 ~~~I~EIEk~ID~aIE~edy 20 (79)
T 2fzt_A 1 GMNIDEIERKIDEAIEKEDY 20 (79)
T ss_dssp -CCHHHHHHHHHHHHHHTCH
T ss_pred CCcHHHHHHHHHHHHHHhhH
Confidence 44556667777766555543
No 183
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.67 E-value=2.1e+02 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVT 391 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~ 391 (403)
..++..+..++..|+.....+.+.+..++.++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555543
No 184
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=28.03 E-value=82 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1out_B 25 PLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMG 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhcCHhHHHHHHHhCCCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999999887753 3666665 56677777766553
No 185
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.94 E-value=5.4e+02 Score=26.88 Aligned_cols=18 Identities=17% Similarity=-0.008 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 015660 301 DWLRNILNEISEAIEFST 318 (403)
Q Consensus 301 dWL~~KLeEV~Eare~~~ 318 (403)
+-|+.++..+...-..+.
T Consensus 93 ~~lk~~~~q~~dndn~~~ 110 (491)
T 1m1j_A 93 NILKPGLEGAQQLDENYG 110 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHH
Confidence 455666666555554443
No 186
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.46 E-value=2.1e+02 Score=25.73 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=7.1
Q ss_pred HhHHHHHHHHHHHH
Q 015660 360 ESVAKTKARLSDLE 373 (403)
Q Consensus 360 ~rv~e~k~RL~~LE 373 (403)
.+|.+...++.+|.
T Consensus 113 akI~aL~~Ei~~Lr 126 (175)
T 3lay_A 113 AKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 187
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.41 E-value=73 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=14.0
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 357 GLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 357 d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
++..|-+++..|+..||.+...|...+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666665555544433
No 188
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.29 E-value=2.8e+02 Score=23.40 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 383 (403)
Q Consensus 340 ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~ 383 (403)
-|..|...+..-.+||+....+++++..+.--+|.+..+|.+.+
T Consensus 63 RlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 63 RLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444555556666666677777777777788888877655
No 189
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.02 E-value=82 Score=26.34 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 361 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 361 rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
.+...+.++..|+++..+|.+.+..+..++++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 190
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.79 E-value=2.6e+02 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015660 327 KANCVNLLESTKKELESQMNELALKEK 353 (403)
Q Consensus 327 K~~~d~~~e~~~~ELEe~leeL~~kek 353 (403)
|--.++.+.+.+.||-....-|..++.
T Consensus 42 rlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 42 RNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 333344444444444333333333333
No 191
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.73 E-value=3.3e+02 Score=23.95 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhHHhHH----HHHHHHHHH-HHhhhhHHHHHHHhhhhhhhc
Q 015660 333 LLESTKKELESQMNELALKEKE-VAGLKESVA----KTKARLSDL-ELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~keke-v~d~~~rv~----e~k~RL~~L-E~ess~l~~~~~~~kSKV~kf 393 (403)
.++.++.+|...+++|+.+... +.+++.++. +.+.+|.-+ +.-..++.+.+..|+-|+.-+
T Consensus 96 ~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~p~ 162 (165)
T 1gs9_A 96 ELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 4444444555555555444333 333444443 556555543 233455566666666666543
No 192
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.72 E-value=62 Score=23.41 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 368 RLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 368 RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.|..||-+...|++.+..+|||+.-.
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555566665443
No 193
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.62 E-value=2.6e+02 Score=25.99 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=9.2
Q ss_pred hhhhhhhccccchhhhc
Q 015660 386 TQSKVTKFSQKSLADEI 402 (403)
Q Consensus 386 ~kSKV~kf~~kSl~D~l 402 (403)
++..+.+..-.+.+||.
T Consensus 148 a~~~l~~~~i~AP~~G~ 164 (369)
T 4dk0_A 148 AETNLGYTKITSPIDGT 164 (369)
T ss_dssp HHHTTCCSSCCCSCCSC
T ss_pred HHHHhhcCEEECCCCeE
Confidence 44444555556666664
No 194
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.45 E-value=3.2e+02 Score=28.27 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=9.0
Q ss_pred HhhhHHhHHHHHHHHHHHHHhh
Q 015660 355 VAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~es 376 (403)
++++++++.++.++|.+++.+.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 195
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.37 E-value=2.5e+02 Score=22.53 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=8.2
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q 015660 321 QTIDAAKANCVNLLESTKKE 340 (403)
Q Consensus 321 ~~~e~~K~~~d~~~e~~~~E 340 (403)
+.++.++++.....+.+..+
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~ 31 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333
No 196
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=26.36 E-value=38 Score=27.30 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQI 382 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~ 382 (403)
|+.-+|++|.+..+|..+||.|.+-|...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556778888999999999888877654
No 197
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.08 E-value=1.2e+02 Score=23.67 Aligned_cols=8 Identities=38% Similarity=0.464 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015660 340 ELESQMNE 347 (403)
Q Consensus 340 ELEe~lee 347 (403)
+||.++.+
T Consensus 33 ~LE~~v~~ 40 (70)
T 1gd2_E 33 ALETQVVT 40 (70)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 198
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=26.00 E-value=1.7e+02 Score=24.23 Aligned_cols=54 Identities=7% Similarity=0.204 Sum_probs=35.7
Q ss_pred hHHHHHHHhhcccccccCcc-------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCNL-------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-------Ks~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.. |..+...|...=
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H 90 (144)
T 1spg_A 27 AEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDN----------LVGGLSQLSELH 90 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHH
Confidence 57889999999998776642 3555644 577777777765533 455555555443
No 199
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.96 E-value=2.6e+02 Score=22.60 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.2
Q ss_pred HHHHHH
Q 015660 350 LKEKEV 355 (403)
Q Consensus 350 ~kekev 355 (403)
|.+.|+
T Consensus 67 qMelE~ 72 (102)
T 2qyw_A 67 EMEEEL 72 (102)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 200
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.86 E-value=3e+02 Score=23.24 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=19.4
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 015660 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLR 304 (403)
Q Consensus 276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~ 304 (403)
+..+.+||..+.. +..|.+.||-|+=.+
T Consensus 53 R~Y~~~dl~~l~~-I~~lr~~G~sL~eIk 80 (148)
T 3gpv_A 53 RIFNEEALKYLEM-ILCLKNTGMPIQKIK 80 (148)
T ss_dssp EEBCHHHHHHHHH-HHHHHTTTCCHHHHH
T ss_pred eecCHHHHHHHHH-HHHHHHcCCCHHHHH
Confidence 5678888886554 566688999764333
No 201
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.75 E-value=2.7e+02 Score=22.56 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 363 AKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 363 ~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
.+.+..|-+++++.--|.-.+.+...-+++.
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666655554
No 202
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=25.46 E-value=98 Score=25.66 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHH
Q 015660 231 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQEL 270 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l------Ks~~lRs---~ym~~Ll~LIetL 270 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~l 74 (141)
T 1cg5_A 26 ADALARLFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHL 74 (141)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhH
Confidence 46889999999998776643 3777776 4666666665443
No 203
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.31 E-value=2.5e+02 Score=22.19 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 393 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf 393 (403)
..|+..+..++..|+.....+.+.+..++.++...
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555543
No 204
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=25.15 E-value=1.7e+02 Score=26.38 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 015660 264 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 314 (403)
Q Consensus 264 l~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Ear 314 (403)
+.||+.|..---..+|-+++.-|+ .... .+.-++||++.+-.+.+.+
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl-~~~g---~~~P~~WLk~ewp~ll~~V 61 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSAL-QYSG---TEVPLQWLRSELPYVLEMV 61 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHH-HHHT---CCCCHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HhcC---CCCcHHHHHHHHHHHHHHH
Confidence 457777777777889999988777 3332 5779999999877665544
No 205
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=24.89 E-value=85 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~s~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1v4x_B 25 PKALARCLIVYPWTQRYFGAYGDLSTPDAIKGNAKIAAHGVKVLHGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSCCCSSHHHHHTCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCHhHHHHHHhhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999998877753 4567765 56677777776553
No 206
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.76 E-value=1.3e+02 Score=25.41 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660 341 LESQMNELALKEKEVAGLKESVAKTKARLSDLELES 376 (403)
Q Consensus 341 LEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~es 376 (403)
+-...++|++...++.++.+++.+++..+..||.++
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 207
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=24.70 E-value=30 Score=27.37 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=24.5
Q ss_pred ceeEeccEEeeccchHHHHHHHhhcccccccCcc
Q 015660 217 DSVSVGKYHVRASISSILQSIISRYGDIAANCNL 250 (403)
Q Consensus 217 etv~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~l 250 (403)
+.+.|+|+.|.|++++. ++..||.++..+.+
T Consensus 5 D~Iiv~G~nv~P~eIE~---~l~~~p~v~~~~~v 35 (109)
T 3gxs_A 5 DMIILKGVNIFPIQIET---ILLQFKELGSDYLI 35 (109)
T ss_dssp SCEEETTEEECHHHHHH---HHHTCTTEEEEEEE
T ss_pred CEEEECCEEECHHHHHH---HHHhCCCcCCcEEE
Confidence 45899999999998765 56679999866543
No 208
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=24.46 E-value=96 Score=25.93 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 2aa1_B 25 PATLARCLVVYPWTQRYFGKFGNLYNAAAIAQNAMVSKHGTTILNGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999998877743 3466554 56677777766553
No 209
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=24.30 E-value=3e+02 Score=24.11 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=18.0
Q ss_pred chHHHHHHHhhcccccccCcccchhHH
Q 015660 230 ISSILQSIISRYGDIAANCNLESNSMR 256 (403)
Q Consensus 230 qv~~v~~IFeKHpDIAsnf~lKs~~lR 256 (403)
-...|+..+.||-.+-.....-.+.++
T Consensus 51 Dl~~v~~ll~kh~~~e~ei~~~~~~v~ 77 (224)
T 2iak_A 51 DLPSVESHLENHKNVHRAIEEFESSLK 77 (224)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888877666655444443
No 210
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=24.21 E-value=3e+02 Score=22.67 Aligned_cols=67 Identities=6% Similarity=0.070 Sum_probs=45.3
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHH---HHHHHHHHHHHHHHhcchhhhc-----cHHHHHHHHHHHhHH
Q 015660 231 SSILQSIISRYGDIAANCNL---------ESNSMR---AYYLECLCSVVQELQSTSLMQM-----TKAKVKEMMAVLKDV 293 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l---------Ks~~lR---s~ym~~Ll~LIetL~~spl~eL-----S~~dL~ea~~~L~dL 293 (403)
..+..++|+.||++-.-|.. .|+.++ ..+|..|..+|..|..+. .| .-.+|...+..
T Consensus 34 ~~fy~rlf~~~P~~k~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~l~~~~~~l~~Lg~~H~~---- 107 (162)
T 2oif_A 34 LRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAG--KITVRETTLKRLGGTHLK---- 107 (162)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHTHHHHT--SCCCSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHChHHHHhcccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCHH--hhhhHHHHHHHHHHHHHh----
Confidence 46788899999999988864 677775 457888888888876533 23 34455555544
Q ss_pred HhcCcchhhhhh
Q 015660 294 ESAQIDVDWLRN 305 (403)
Q Consensus 294 ~~agfKvdWL~~ 305 (403)
-|++-+|...
T Consensus 108 --~gV~p~~f~~ 117 (162)
T 2oif_A 108 --YGVADGHFEV 117 (162)
T ss_dssp --TTCCHHHHHH
T ss_pred --cCCCHHHHHH
Confidence 2565555543
No 211
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.15 E-value=2.7e+02 Score=22.09 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=4.2
Q ss_pred hhHHHHHHHHH
Q 015660 304 RNILNEISEAI 314 (403)
Q Consensus 304 ~~KLeEV~Ear 314 (403)
++++.++....
T Consensus 30 ~~~i~~l~~~l 40 (112)
T 1l8d_A 30 KNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 212
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=24.13 E-value=1.5e+02 Score=24.76 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHH---HHHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL--------ESNSMR---AYYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l--------Ks~~lR---s~ym~~Ll~LIetL~~ 272 (403)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~~H~~~v~~al~~~v~~ldd 87 (150)
T 4hrt_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDD 87 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 36889999999999777653 244553 4688888888887754
No 213
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.04 E-value=3.7e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTK 392 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k 392 (403)
++.+.+-+.+|.++..+..++.+.-..+++.|..
T Consensus 113 ~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 113 KDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777777777777755555555544
No 214
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.03 E-value=2.4e+02 Score=23.19 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhHHHh
Q 015660 281 AKVKEMMAVLKDVES 295 (403)
Q Consensus 281 ~dL~ea~~~L~dL~~ 295 (403)
.++..+..+|..|..
T Consensus 32 ~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 32 SELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccc
Confidence 466777777777764
No 215
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.97 E-value=83 Score=24.42 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=27.3
Q ss_pred hhhHHhHHHHHHHHHHH---HHhhhhHHHHHHHhhhhhhhcccc
Q 015660 356 AGLKESVAKTKARLSDL---ELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 356 ~d~~~rv~e~k~RL~~L---E~ess~l~~~~~~~kSKV~kf~~k 396 (403)
++++.|+.+++.||..| |.+....++-|....|-+.-|.|+
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35566777777777665 455556667777777777766554
No 216
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.87 E-value=2.1e+02 Score=20.78 Aligned_cols=11 Identities=64% Similarity=0.736 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 015660 363 AKTKARLSDLE 373 (403)
Q Consensus 363 ~e~k~RL~~LE 373 (403)
..++.||.+||
T Consensus 33 ~KlKqRit~lE 43 (46)
T 3swy_A 33 MKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 217
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=23.77 E-value=98 Score=25.64 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-----lKs~~lRs---~ym~~Ll~LIetL~ 271 (403)
..+..++|+.||++-.-|. ..|+.|+. ..|+.|..+|..|.
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld 74 (141)
T 2r80_A 26 GEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHID 74 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCchHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999998776665 35666665 56777777776553
No 218
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=23.55 E-value=4.2e+02 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=5.7
Q ss_pred HhHHHHHHHHHHHH
Q 015660 360 ESVAKTKARLSDLE 373 (403)
Q Consensus 360 ~rv~e~k~RL~~LE 373 (403)
+||.--..+|...|
T Consensus 149 eKI~RNQsKLssAE 162 (294)
T 3caz_A 149 ERIERNQQKFKDAE 162 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhhhHH
Confidence 34444444444433
No 219
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=23.48 E-value=2.9e+02 Score=22.15 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHHhhcccccccCcc---cchhHHHHHHHHHHHHHHHHhcch
Q 015660 232 SILQSIISRYGDIAANCNL---ESNSMRAYYLECLCSVVQELQSTS 274 (403)
Q Consensus 232 ~~v~~IFeKHpDIAsnf~l---Ks~~lRs~ym~~Ll~LIetL~~sp 274 (403)
.+..++|+.||++..-|.- +...-+...|+.|..+|.-|....
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~ 71 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLE 71 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHH
Confidence 5677999999999998852 223345688888888888776644
No 220
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.45 E-value=2.7e+02 Score=21.85 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 396 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~k 396 (403)
...+..=-..|.+++....+..-+|.....++.++..+
T Consensus 49 g~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 49 GNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566666777778777777777788888888877643
No 221
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.36 E-value=1.4e+02 Score=24.73 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.0
Q ss_pred hHHHHHHHhhcccccccCcc-cch---hHHHHHHHHHHHHHHHHhc
Q 015660 231 SSILQSIISRYGDIAANCNL-ESN---SMRAYYLECLCSVVQELQS 272 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-Ks~---~lRs~ym~~Ll~LIetL~~ 272 (403)
..++.++|+.||++-.-|.- .++ .=....|+.|...|.-|..
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~h~~~v~~al~~~v~~ld~ 70 (136)
T 1gcv_B 25 TQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDD 70 (136)
T ss_dssp HHHHHHHHHHSGGGGGGTTTCTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChHHHHHhhcccCCCccHHHHHHHHHHHHHHHhHhh
Confidence 37899999999998887754 344 3345678888888876643
No 222
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=23.00 E-value=1.5e+02 Score=28.28 Aligned_cols=43 Identities=5% Similarity=0.149 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcc
Q 015660 231 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQST 273 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~lKs~~l---Rs~ym~~Ll~LIetL~~s 273 (403)
..+..++|+.||++-.-|.--|+.+ ....++.|..+|.-|...
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~~l~~~~~~ld~~ 71 (403)
T 1cqx_A 26 KCFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDP 71 (403)
T ss_dssp HHHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhChHHHhhCcccchhhHHHHHHHHHHHHHHHHhccCH
Confidence 3677889999999999888765544 667888888888777543
No 223
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.97 E-value=2.7e+02 Score=22.37 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.6
Q ss_pred chhhhhhHHH
Q 015660 299 DVDWLRNILN 308 (403)
Q Consensus 299 KvdWL~~KLe 308 (403)
.|+||+.-|+
T Consensus 25 ~le~Lee~le 34 (86)
T 3nr7_A 25 TLETLEEMLE 34 (86)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3666665444
No 224
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.80 E-value=6.7e+02 Score=26.20 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 379 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l 379 (403)
.+.+.-.+||.+++.|.++-..-- .+|..++.-|.++--+-.+|
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi---~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQV---NRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444455566666555544433211 34444444444443333333
No 225
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=22.02 E-value=75 Score=22.03 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=15.5
Q ss_pred HHHHHHhHHHhcCcchhhhhhHHHHH
Q 015660 285 EMMAVLKDVESAQIDVDWLRNILNEI 310 (403)
Q Consensus 285 ea~~~L~dL~~agfKvdWL~~KLeEV 310 (403)
+....+.+++ +.+||+.+|++|
T Consensus 10 d~gr~~q~~~----R~~WLq~~l~~v 31 (34)
T 1et1_A 10 NLGKHLNSME----RVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHhc
Confidence 3445555555 368999999987
No 226
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=21.95 E-value=2.8e+02 Score=21.92 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660 359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395 (403)
Q Consensus 359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~ 395 (403)
...+..=-..|.+++.+..++.-+|...-.++.+|..
T Consensus 50 g~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 50 GNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355566667777777777777777777777777754
No 227
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=21.73 E-value=54 Score=28.50 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=32.7
Q ss_pred ccchHHHHHHHhhcc-cccccC--cccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 015660 228 ASISSILQSIISRYG-DIAANC--NLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 304 (403)
Q Consensus 228 ~Sqv~~v~~IFeKHp-DIAsnf--~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~ 304 (403)
.+.+++|..+|.++. +..-+. .+=+| .+||+||+.|...- -++.+.|+.||+
T Consensus 26 ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq-------~vLLSLiqqls~dL------------------~~~~~~Kl~WLe 80 (139)
T 2vxg_A 26 ANDLGLVEFTLRHTDSNQAFAPEGCRLEQ-------KVLLSLIQQISADM------------------TNHNELKQRYLN 80 (139)
T ss_dssp TTCHHHHHHHHHHSCHHHHTC----CCCH-------HHHHHHHHHHHHCC------------------TTCCHHHHHHHH
T ss_pred hCcHHHHHHHHHcCCHHHhcCCCCCCccH-------HHHHHHHHHHHHHh------------------ccCcHHHHHHHH
Confidence 456778888888763 211110 22233 46899998885322 124567899987
Q ss_pred hHHH
Q 015660 305 NILN 308 (403)
Q Consensus 305 ~KLe 308 (403)
.-+-
T Consensus 81 ~vl~ 84 (139)
T 2vxg_A 81 EALL 84 (139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 228
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.72 E-value=95 Score=21.02 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=12.1
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHH
Q 015660 352 EKEVAGLKESVAKTKARLSDLEL 374 (403)
Q Consensus 352 ekev~d~~~rv~e~k~RL~~LE~ 374 (403)
|+++..+..-+.+..+||.+||+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555666666654
No 229
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.58 E-value=1.3e+02 Score=30.19 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=10.0
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhh
Q 015660 355 VAGLKESVAKTKARLSDLELESN 377 (403)
Q Consensus 355 v~d~~~rv~e~k~RL~~LE~ess 377 (403)
++++++++.++.+.+.+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 230
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=21.41 E-value=2.3e+02 Score=23.65 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=35.4
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 015660 231 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~-----lKs~~lRs---~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~ 294 (403)
..++.++|..||++-.-|. ..|+.+|. ..|..|...|.-|. +|..+...|...=
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~aHg~~v~~al~~~v~~ld----------~l~~~l~~L~~~H 87 (140)
T 3mkb_A 26 AEALARLFATHPGAKSYFDYADYSAAGAKVQLHGGKVIRAVVSAAEHDD----------DLHAHLMVLAVTH 87 (140)
T ss_dssp HHHHHHHHHHCGGGGGGCCCSCCSTTCHHHHHHHHHHHHHHHHHHTTTT----------THHHHTHHHHHHH
T ss_pred HHHHHHHHHHChHHHhhCccccCCCCCHHHHHHHHHHHHHHHHHHHChh----------hHHHHHHHHHHHh
Confidence 3568999999999876655 35788875 56666666664442 2445555555554
No 231
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.41 E-value=3.5e+02 Score=22.44 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.4
Q ss_pred hhhhhhHHHHHH
Q 015660 300 VDWLRNILNEIS 311 (403)
Q Consensus 300 vdWL~~KLeEV~ 311 (403)
++-|+.+|..+.
T Consensus 7 ~e~lre~l~~le 18 (97)
T 2eqb_B 7 YNQLKEDYNTLK 18 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 232
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.29 E-value=2.3e+02 Score=20.29 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=3.9
Q ss_pred HHHHHHHHHHh
Q 015660 346 NELALKEKEVA 356 (403)
Q Consensus 346 eeL~~kekev~ 356 (403)
++|.....+|.
T Consensus 40 ~~l~~~~~~I~ 50 (60)
T 3htk_A 40 EKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 233
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=21.18 E-value=1.6e+02 Score=27.22 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=31.9
Q ss_pred hHHHHHHHhhcccccccCcc-----cchhHHH---HHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----ESNSMRA---YYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----Ks~~lRs---~ym~~Ll~LIetL~ 271 (403)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 168 ~~~~~rlF~~~P~~~~~F~~fd~~~~n~~~~~h~~~v~~al~~~v~~ld 216 (283)
T 1c7c_A 168 AEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVD 216 (283)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Confidence 57889999999999887765 7788876 46777777776553
No 234
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=21.14 E-value=2.5e+02 Score=23.08 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=37.4
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES- 295 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lRs~---ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~- 295 (403)
..+..++|+.||++-.-|.- .|+.++.- .|+.|..+|.-| ++|..+...|...=.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~l----------d~l~~~l~~L~~~H~~ 94 (146)
T 2w72_B 25 GEAYGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAQGKKVLGAFSDGLAHL----------DNLKGTFATLSELHCD 94 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCCSSHHHHHHCHHHHHHHHHHHHHHHHHTTCT----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChhHHHHhHhhcCCCcHHHHccCHHHHHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHHhhh
Confidence 47899999999999988863 56666654 444444444322 125555555555432
Q ss_pred -cCcchhh
Q 015660 296 -AQIDVDW 302 (403)
Q Consensus 296 -agfKvdW 302 (403)
-|++-+-
T Consensus 95 k~~V~p~~ 102 (146)
T 2w72_B 95 KLHVDPEN 102 (146)
T ss_dssp TSCCCTHH
T ss_pred ccCCChHH
Confidence 3554443
No 235
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.97 E-value=2.4e+02 Score=25.28 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=14.4
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchh
Q 015660 277 QMTKAKVKEMMAVLKDVESAQIDVD 301 (403)
Q Consensus 277 eLS~~dL~ea~~~L~dL~~agfKvd 301 (403)
-.|.++|..+. .+..|++.||-|+
T Consensus 44 ~y~~~~~~~l~-~i~~l~~~g~~l~ 67 (278)
T 1r8e_A 44 YYTDSQLIHLD-LIKSLKYIGTPLE 67 (278)
T ss_dssp EEETGGGGHHH-HHHHHHHTTCCHH
T ss_pred ccCHHHHHHHH-HHHHHHHCCCCHH
Confidence 35555655444 4556677887765
No 236
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.84 E-value=3.2e+02 Score=21.74 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 015660 364 KTKARLSDLEL 374 (403)
Q Consensus 364 e~k~RL~~LE~ 374 (403)
.++.||.+||.
T Consensus 36 KLKqRit~LE~ 46 (74)
T 3swf_A 36 KLKQRLTKVEK 46 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 237
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.80 E-value=3.6e+02 Score=22.30 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 015660 365 TKARLSDLELESNRLEQII 383 (403)
Q Consensus 365 ~k~RL~~LE~ess~l~~~~ 383 (403)
.++-|..++.....|...+
T Consensus 73 lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 238
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=20.72 E-value=3.9 Score=36.98 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 015660 354 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403 (403)
Q Consensus 354 ev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~lL 403 (403)
++.++.+++.++++++.++..+..++.++..-=+....+|...+|+-+||
T Consensus 27 ~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LL 76 (177)
T 3a6m_A 27 RLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALL 76 (177)
T ss_dssp STTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777777666666677776666665553
No 239
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.57 E-value=97 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 015660 364 KTKARLSDLELESNRLEQIIQAT 386 (403)
Q Consensus 364 e~k~RL~~LE~ess~l~~~~~~~ 386 (403)
-|-+||.+.|...+.+++.+..+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877766543
No 240
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=20.30 E-value=55 Score=27.50 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHH---HHHHHHHHHHHHHHh
Q 015660 231 SSILQSIISRYGDIAANCNL-----------ESNSMR---AYYLECLCSVVQELQ 271 (403)
Q Consensus 231 v~~v~~IFeKHpDIAsnf~l-----------Ks~~lR---s~ym~~Ll~LIetL~ 271 (403)
..+..++|+.||++-.-|.- .|+.++ ...|..|..+|..|.
T Consensus 33 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~v~~ld 87 (154)
T 4b4y_A 33 EDVLQQFMEENPETFQIFPWADASKTAKEMRSHPRFKSHAKSIGKVISDCLVDLN 87 (154)
T ss_dssp HHHHHHHHHHCTTHHHHSTTCCTTSCHHHHTTSHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHCHhHHHHhHHhcCCCcHHHHHcCHHHHHHHHHHHHHHHHHHHHCC
Confidence 46889999999998766653 334443 467788888887765
No 241
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.25 E-value=4.6e+02 Score=23.36 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015660 333 LLESTKKELESQMNELALKEKEV 355 (403)
Q Consensus 333 ~~e~~~~ELEe~leeL~~kekev 355 (403)
.++.+..++......+.+.+.++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 242
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.20 E-value=2.2e+02 Score=27.89 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 015660 362 VAKTKARLSDL 372 (403)
Q Consensus 362 v~e~k~RL~~L 372 (403)
|.+++..|.+|
T Consensus 42 i~~l~~~i~~l 52 (323)
T 1lwu_C 42 VTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!