Query 015661
Match_columns 403
No_of_seqs 129 out of 428
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 4.1E-98 9E-103 751.1 33.1 358 5-399 1-374 (374)
2 KOG2777 tRNA-specific adenosin 100.0 6.3E-90 1.4E-94 703.4 26.0 357 5-401 173-542 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 2.5E-85 5.5E-90 656.2 15.5 328 51-394 1-343 (343)
4 COG0590 CumB Cytosine/adenosin 83.9 5.9 0.00013 35.4 8.0 34 46-88 38-71 (152)
5 PRK10860 tRNA-specific adenosi 49.3 16 0.00035 33.3 3.0 15 131-145 83-97 (172)
6 cd01285 nucleoside_deaminase N 47.6 14 0.00029 30.8 2.1 16 131-146 68-83 (109)
7 PF15134 DUF4570: Domain of un 44.6 18 0.0004 30.5 2.4 23 70-95 10-32 (109)
8 cd01283 cytidine_deaminase Cyt 27.9 44 0.00096 27.7 2.1 17 130-146 65-86 (112)
9 PF14737 DUF4470: Domain of un 21.2 69 0.0015 26.1 2.0 45 45-89 23-76 (100)
10 PF14216 DUF4326: Domain of un 16.3 63 0.0014 26.1 0.7 8 74-81 78-85 (86)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=4.1e-98 Score=751.09 Aligned_cols=358 Identities=41% Similarity=0.650 Sum_probs=290.6
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHH
Q 015661 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (403)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkP~~~e~tvLA~iV~~~~~-~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVlARR~ 83 (403)
.|||+||++|+++|++||++|||..+||||||||||+++. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999999874 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCC-CceEecCCcEEEEEeccCCCCccccccccCCCCCCCC--c--
Q 015661 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS--R-- 158 (403)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~~~--~-- 158 (403)
|+||||+||+.+.++ . ...||+..++ ++|+||+||+||||||++|||||||+.+....++... .
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999988542 1 3457887554 4999999999999999999999999977643332100 0
Q ss_pred ----CCCCCCccccCCCccccccccccccceeecCCCCC--CcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015661 159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (403)
Q Consensus 159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPGRg--d~t~SmSCSDKLarWnvlGlQGaLLS~~iePiYlssivi 232 (403)
.+.........+|+. +++..|+|||||||| ++|+|||||||||||||||||||||||||+||||++|||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~-----~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTV-----PVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCcc-----cccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 011111112233333 356789999999999 569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCCc-ceee
Q 015661 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI 311 (403)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Si~W~~~~~-~Evi 311 (403)
|.... .+++|+|||++|+.++ ..+|.+|.+++|++... +..+|+. ...+ +...|++|+.++. .|++
T Consensus 225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~--~~~~~~~---~~~~-s~~~Sl~W~~~~~~~ev~ 291 (374)
T smart00552 225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLV--SVADFQR---QTAK-SPNFSVNWSQGDESLEIL 291 (374)
T ss_pred cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeecc--Ccccccc---cCCC-CCCCeEEEEeCCCcEEEE
Confidence 96332 2479999999999877 56789999999998653 2335521 1111 2234899997665 8999
Q ss_pred eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCcccHHHHHhchHHHHHHHHHhhc---CCCCCCC
Q 015661 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNNW 388 (403)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~~g~W 388 (403)
+|.+|++++ .++++|+|||++||++|.+|......... ...||.|+|.++.+||++|+.|++ +.+||+|
T Consensus 292 ng~~G~~~~-------~~~~~S~lcK~~l~~~f~~l~~~~~~~~~-~~~sY~e~K~~a~~Yq~aK~~l~~~l~~~~~g~W 363 (374)
T smart00552 292 NGLTGKTQK-------SLGSPSRLCKKALFRLFQKLCSKLKRDDL-LHISYAEAKEAASEYQEAKQLLFEALNKAGLGSW 363 (374)
T ss_pred ECcCCeECC-------CCCCccHHHHHHHHHHHHHHHHhhccccc-CcCCHHHHHHhHHHHHHHHHHHHHHHhHhhCCCc
Confidence 999999883 25678999999999999999877654333 238999999999999999966543 3579999
Q ss_pred ccCCCCCcCcc
Q 015661 389 PLKPLGYEVFF 399 (403)
Q Consensus 389 ~~kp~~~~~F~ 399 (403)
++||+++++|.
T Consensus 364 ~~KP~e~~~F~ 374 (374)
T smart00552 364 IKKPPEQDQFK 374 (374)
T ss_pred ccCCCchhccC
Confidence 99999999995
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=6.3e-90 Score=703.39 Aligned_cols=357 Identities=39% Similarity=0.611 Sum_probs=295.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHH
Q 015661 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (403)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkP~~~e~tvLA~iV~~~-~~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVlARR~ 83 (403)
.++|+||++|+++|++|+++|+|..+|||||||||+.. +..+.+||||||||||++++.|+.+|.+|||||||||||||
T Consensus 173 ~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR~ 252 (542)
T KOG2777|consen 173 TLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARRG 252 (542)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHHH
Confidence 58999999999999999999999999999999999987 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCCC-ceEecCCcEEEEEeccCCCCccccccccCCCCC-----CCC
Q 015661 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FFS 157 (403)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~-----~~~ 157 (403)
|+||||+||+++.+. ..+.||++.++| +|+||+||.||||||++|||||+|+.+.....+ ...
T Consensus 253 llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~~ 321 (542)
T KOG2777|consen 253 LLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNST 321 (542)
T ss_pred HHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCch
Confidence 999999999999642 134588865544 699999999999999999999999876543222 112
Q ss_pred cCCCCCCccccCCCccccccccccccceeecCCCC--CCcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEeCCC
Q 015661 158 REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRS 235 (403)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPGR--gd~t~SmSCSDKLarWnvlGlQGaLLS~~iePiYlssivig~~ 235 (403)
..+..+..++.++|+.. ++..+.||||||| |++++||||||||+||||||||||||||||+||||+|||||..
T Consensus 322 ~~~~~~~~~~~g~g~~~-----~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~~ 396 (542)
T KOG2777|consen 322 RRGQLRTKIESGEGTIP-----VGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGKS 396 (542)
T ss_pred hhhccchhhhccccccc-----cCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEeccc
Confidence 23444444455555543 5678999999999 8999999999999999999999999999999999999999975
Q ss_pred CCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCC-cceeeeCC
Q 015661 236 PNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVILGT 314 (403)
Q Consensus 236 ~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Si~W~~~~-~~Evi~~~ 314 (403)
.++ .++|.|||+.|+......+|.+|.+|.|.+... ++.+ + .+...+++|+||+.++ ..||++..
T Consensus 397 ~~~------~~~L~rAi~~R~~~~~~~lp~~~~~n~p~~~~v--~~~~-r-----~~~~~~~~slnW~~~~~~~ev~d~~ 462 (542)
T KOG2777|consen 397 LHS------PEHLSRAIHGRLSNFLGNLPPPYILNPPLLSRV--SDAE-R-----QPGKMTPFSLNWSLGDYDLEVNDVT 462 (542)
T ss_pred cCC------HHHHHHHHhcccccccCCCCCceeecCcccccC--CHhH-h-----ccccCCceeeeeecCCcceEecccc
Confidence 443 369999999999873334889999999987764 2222 2 2223345899999876 78998888
Q ss_pred CCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCcccHHHHHhchHHHHHHHHHhhc---CCCCCCCccC
Q 015661 315 TGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNNWPLK 391 (403)
Q Consensus 315 ~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~~g~W~~k 391 (403)
||+.-+ +.+|||||++||..|..+......... ...+|.++|..+++||.+|+.|.. +.+||+|++|
T Consensus 463 ~G~~~~---------~~~srlcK~~~~~~~~~l~~~~~~~~~-~~~~y~~ak~~~k~yq~ak~~l~~~Lk~~glG~Wi~K 532 (542)
T KOG2777|consen 463 TGRTSL---------GSASRLCKASLFEAFRKLHGLLPKLLL-LPLSYGEAKAEAKEYQSAKKQLKKALKQAGLGNWIRK 532 (542)
T ss_pred cCcccC---------CCccHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHhHHHHHHHHHHHHHHHHcccCcCccC
Confidence 887432 247999999999999999987654332 456799999999999999988753 4699999999
Q ss_pred CCCCcCcccc
Q 015661 392 PLGYEVFFQG 401 (403)
Q Consensus 392 p~~~~~F~~~ 401 (403)
|+|+++|.+.
T Consensus 533 P~e~~~F~l~ 542 (542)
T KOG2777|consen 533 PPELDQFTLA 542 (542)
T ss_pred ChhhhccccC
Confidence 9999999863
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=2.5e-85 Score=656.17 Aligned_cols=328 Identities=39% Similarity=0.625 Sum_probs=183.7
Q ss_pred EEecCCCcccCCccCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeC--CCCceEecCC
Q 015661 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (403)
Q Consensus 51 slgTG~Kc~~~~~l~~~G~~lhD~HAEVlARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (403)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+.+... .+ ...+||+.. .+++|+|||+
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~------~~-~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGS------GD-KESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH-------H-HHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCC------cc-ccCceEeecCCCCceeEeCCC
Confidence 79999999999999999999999999999999999999999999865310 00 123567654 5679999999
Q ss_pred cEEEEEeccCCCCccccccccCCCCCC--CCc---CCCCCCccccCCCc-------cccccccccccceeecCCCCCCcc
Q 015661 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSR---EGNSLSSVDELNGF-------KDGIYDSLQHIGRVQRKPGRGDTT 196 (403)
Q Consensus 129 v~lhLYiS~~PCGDAsi~~~~~~~~~~--~~~---~~~~~~~~~~~~g~-------~~~~~~~~~~~g~vRtKPGRgd~t 196 (403)
|+||||||++|||||||+.+...+.+. ... ........ ...+. .......++..|++||||||||++
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~ 152 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKI-TGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRT 152 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEE-TSSSEEE--SS----------HHHHH-----TT---
T ss_pred eEEEEEeccCccCcccccccccccccccccccccccccccccc-CCCcccCCCccccccccccccCCceeeeeccccCCC
Confidence 999999999999999999876421110 000 00000000 01111 011124578899999999999999
Q ss_pred eeechhhHHHHHHHhhhhhhhhhhccccceeceEEeCCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEee
Q 015661 197 LSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLA 276 (403)
Q Consensus 197 ~SmSCSDKLarWnvlGlQGaLLS~~iePiYlssivig~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~ 276 (403)
.|||||||||+||||||||||||+|||||||++||||..+. + .+++|+|||++|+......++.||.++.|++..
T Consensus 153 ~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~-~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 153 PSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----F-SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred cceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----C-CHHHHHhhhhcccccccccCCCCceecCcceee
Confidence 99999999999999999999999999999999999997642 1 247999999999955556778999999998874
Q ss_pred ccCCCcccccCccccCCCCCcccEEeeCCCcceeeeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhccc
Q 015661 277 ASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCL 356 (403)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~Si~W~~~~~~Evi~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~ 356 (403)
.... .............++++|++|+..+..|+++ +|+++|.++|+...++++|+|||++||+.|.+|...+....+
T Consensus 228 ~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck~~l~~~f~~l~~~~~~~~~ 304 (343)
T PF02137_consen 228 SSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCKAALFELFLQLLKALNRSDL 304 (343)
T ss_dssp ------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSHHHHHHHHHHHHCCS-SS--
T ss_pred cccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccHHHHHHHHHHHHHhhccccC
Confidence 2110 0122233445667889999999855567766 899999988888889999999999999999999876655556
Q ss_pred CCcccHHHHHhchHHHHHHHHHhhcC-CCCCCCccCCCC
Q 015661 357 AADISYRELKDGAQAYNIASKVFKGG-PPFNNWPLKPLG 394 (403)
Q Consensus 357 ~~~~tY~e~K~~a~~Yq~~k~~l~~~-~~~g~W~~kp~~ 394 (403)
....||+++|..+.+||++|+.|+.. .+|++|++||+|
T Consensus 305 ~~~~tY~~~K~~a~~Y~~ak~~l~~~~~~~~~W~~k~~e 343 (343)
T PF02137_consen 305 KSSKTYYEAKRAASDYQEAKQQLKSAQQGLGGWIRKPPE 343 (343)
T ss_dssp SS--SHHHHHHT-HHHHHHHHHHHHHHTTS-------GG
T ss_pred CCcccHHHHHHCHHHHHHHHHHHHhhhccCCCCCCCCCC
Confidence 66679999999999999999999875 789999999976
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=83.91 E-value=5.9 Score=35.39 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHHHHHHH
Q 015661 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (403)
Q Consensus 46 ~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVlARR~f~r~L 88 (403)
+-+||+-|-++..-..+-.. ||||+|.|.+-+-|
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~~ 71 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAETL 71 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHhh
Confidence 34788877776665543221 99999999885544
No 5
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=49.29 E-value=16 Score=33.30 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.6
Q ss_pred EEEEeccCCCCcccc
Q 015661 131 LHLYISQLPCGDASL 145 (403)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (403)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 579999999965443
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=47.61 E-value=14 Score=30.79 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.3
Q ss_pred EEEEeccCCCCccccc
Q 015661 131 LHLYISQLPCGDASLS 146 (403)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (403)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 7899999999876653
No 7
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=44.62 E-value=18 Score=30.51 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Q 015661 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (403)
Q Consensus 70 ~lhD~HAEVlARR~f~r~Ly~el~~~ 95 (403)
-|++-|.|||++|.+ |++++++-
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 368899999999987 66777664
No 8
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=27.87 E-value=44 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.0
Q ss_pred EEEEEec-----cCCCCccccc
Q 015661 130 QLHLYIS-----QLPCGDASLS 146 (403)
Q Consensus 130 ~lhLYiS-----~~PCGDAsi~ 146 (403)
..-+|+| -+|||.++-.
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~ 86 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQV 86 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHH
Confidence 4678899 8999998865
No 9
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=21.23 E-value=69 Score=26.13 Aligned_cols=45 Identities=31% Similarity=0.416 Sum_probs=29.0
Q ss_pred CCeEEEEEecCCC-----cccCCccCCCC----CcccchHHHHHHHHHHHHHHH
Q 015661 45 KDLEVVALGTGTK-----CIGRSLLSPHG----DIVNDSHAEIVARRALLRFFY 89 (403)
Q Consensus 45 ~~~~vvslgTG~K-----c~~~~~l~~~G----~~lhD~HAEVlARR~f~r~Ly 89 (403)
+++.++=+|.|.- .+........+ -.|+|.++||+||--++-.+.
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHH
Confidence 3577777777751 22211112222 489999999999998877664
No 10
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=16.27 E-value=63 Score=26.10 Aligned_cols=8 Identities=25% Similarity=0.708 Sum_probs=7.2
Q ss_pred hHHHHHHH
Q 015661 74 SHAEIVAR 81 (403)
Q Consensus 74 ~HAEVlAR 81 (403)
|||+||+.
T Consensus 78 CHgDVL~e 85 (86)
T PF14216_consen 78 CHGDVLAE 85 (86)
T ss_pred CchHHHhh
Confidence 99999985
Done!