Query 015661
Match_columns 403
No_of_seqs 129 out of 428
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 7.5E-95 2.6E-99 732.4 26.7 361 4-401 23-402 (403)
2 1wwr_A TRNA adenosine deaminas 74.5 6.5 0.00022 34.5 6.6 16 131-146 93-108 (171)
3 2b3j_A TRNA adenosine deaminas 58.3 4.7 0.00016 34.9 2.3 16 131-146 77-92 (159)
4 2a8n_A Cytidine and deoxycytid 56.8 3.8 0.00013 34.8 1.4 16 131-146 74-89 (144)
5 1z3a_A TRNA-specific adenosine 54.8 4.7 0.00016 35.3 1.7 15 131-145 79-93 (168)
6 2nx8_A TRNA-specific adenosine 50.2 11 0.00037 33.3 3.3 15 131-145 86-100 (179)
7 1wkq_A Guanine deaminase; doma 49.7 11 0.00037 32.8 3.3 15 131-145 82-96 (164)
8 2g84_A Cytidine and deoxycytid 46.8 12 0.0004 33.6 3.0 15 131-145 105-119 (197)
9 3dh1_A TRNA-specific adenosine 33.6 15 0.00052 32.6 1.6 15 74-88 74-88 (189)
10 3v4k_A DNA DC->DU-editing enzy 33.6 8.2 0.00028 34.9 -0.2 18 129-146 100-117 (203)
11 2nyt_A Probable C->U-editing e 22.6 39 0.0013 30.0 2.2 15 130-144 84-98 (190)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-95 Score=732.35 Aligned_cols=361 Identities=33% Similarity=0.530 Sum_probs=288.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHH
Q 015661 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (403)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkP~~~e~tvLA~iV~~~~--~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVlAR 81 (403)
..|||+||++|+++|++|+++|||..+||||||||||+.+ .++++||||||||||+++++++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 4689999999999999999999999889999999999975 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCCCceEecCCcEEEEEeccCCCCccccccccCCCCC-----CC
Q 015661 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FF 156 (403)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~-----~~ 156 (403)
|||+||||+||+.+.... ++. ..+||++.++|+|+||+||+||||||++|||||||+.+.+...+ .+
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998875210 011 24589988888999999999999999999999999876532211 00
Q ss_pred C--cCCCCCCccccCCCccccccccccccceeecCCC--CCCcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015661 157 S--REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (403)
Q Consensus 157 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPG--Rgd~t~SmSCSDKLarWnvlGlQGaLLS~~iePiYlssivi 232 (403)
. ..+.+...++.++|+.+.. ..+.++|+|| ||++|+||||||||||||||||||||||||++||||++|||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 0 1223333333444443322 1234567777 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCC-cceee
Q 015661 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI 311 (403)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Si~W~~~~-~~Evi 311 (403)
|.+++ .++|+|||++|+..+ ..+|.||++++|.+...+.. +.+ .+..++++|++|+.++ ..|||
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~~Evi 314 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSAIEVI 314 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSSCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCceEEE
Confidence 98753 478999999999875 35789999999998764322 222 2234667899999754 59999
Q ss_pred eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhc----ccCCcccHHHHHhchHHHHHHHHHhhc---CCC
Q 015661 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIR----CLAADISYRELKDGAQAYNIASKVFKG---GPP 384 (403)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~----~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~ 384 (403)
+|.||++. ++++|+|||++||++|.+|...+... ......||.|+|.++.+||++|+.|++ +.+
T Consensus 315 ~g~tGk~~---------~~~~SrlcK~~l~~~f~~l~~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~~~~~~~ 385 (403)
T 1zy7_A 315 NATTGKDE---------LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAG 385 (403)
T ss_dssp ETTTTEET---------TSCCCTTSHHHHHHHHHHHHTTSCGGGCSSCCSSCCSHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCC---------cCCcCHHHHHHHHHHHHHHHHHhccccccccCCCccCHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 99999742 24589999999999999998765332 234678999999999999999998863 368
Q ss_pred CCCCccCCCCCcCcccc
Q 015661 385 FNNWPLKPLGYEVFFQG 401 (403)
Q Consensus 385 ~g~W~~kp~~~~~F~~~ 401 (403)
||+|++||+++|+|.+.
T Consensus 386 lg~W~~Kp~e~d~F~l~ 402 (403)
T 1zy7_A 386 LGAWVEKPTEQDQFSLT 402 (403)
T ss_dssp SCCCCCCCGGGGCCCCC
T ss_pred CCCCCcCCcccCceEec
Confidence 99999999999999975
No 2
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=74.47 E-value=6.5 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q 015661 131 LHLYISQLPCGDASLS 146 (403)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (403)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 5789999999877653
No 3
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=58.26 E-value=4.7 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q 015661 131 LHLYISQLPCGDASLS 146 (403)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (403)
..||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 5789999999876653
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=56.80 E-value=3.8 Score=34.78 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEEEeccCCCCccccc
Q 015661 131 LHLYISQLPCGDASLS 146 (403)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (403)
..||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877653
No 5
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=54.83 E-value=4.7 Score=35.28 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcccc
Q 015661 131 LHLYISQLPCGDASL 145 (403)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (403)
.-||+|..||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 468999999986665
No 6
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=50.15 E-value=11 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcccc
Q 015661 131 LHLYISQLPCGDASL 145 (403)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (403)
.-||+|..||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 579999999976554
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=49.72 E-value=11 Score=32.79 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=12.1
Q ss_pred EEEEeccCCCCcccc
Q 015661 131 LHLYISQLPCGDASL 145 (403)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (403)
.-||+|..||+-++.
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 479999999976654
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=46.82 E-value=12 Score=33.58 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.6
Q ss_pred EEEEeccCCCCcccc
Q 015661 131 LHLYISQLPCGDASL 145 (403)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (403)
.-||+|..||--++.
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 679999999974443
No 9
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=33.64 E-value=15 Score=32.64 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 015661 74 SHAEIVARRALLRFF 88 (403)
Q Consensus 74 ~HAEVlARR~f~r~L 88 (403)
.||||+|.|...+.+
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 599999999887665
No 10
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=33.62 E-value=8.2 Score=34.95 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.5
Q ss_pred cEEEEEeccCCCCccccc
Q 015661 129 WQLHLYISQLPCGDASLS 146 (403)
Q Consensus 129 v~lhLYiS~~PCGDAsi~ 146 (403)
+++..|+|-+||-+++-.
T Consensus 100 Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 100 YRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred EEEEEEEeCCChHHHHHH
Confidence 679999999999987753
No 11
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=22.57 E-value=39 Score=30.02 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=11.4
Q ss_pred EEEEEeccCCCCccc
Q 015661 130 QLHLYISQLPCGDAS 144 (403)
Q Consensus 130 ~lhLYiS~~PCGDAs 144 (403)
..-||+|-.||-.++
T Consensus 84 g~TlYvTlePC~~Ca 98 (190)
T 2nyt_A 84 NVTWYVSSSPCAACA 98 (190)
T ss_pred CeEEEEEcChHHHHH
Confidence 357999999996543
Done!