Query 015663
Match_columns 403
No_of_seqs 329 out of 4113
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-42 1.3E-46 353.1 22.2 322 6-331 393-757 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 6.3E-38 2.2E-42 288.0 14.9 259 7-322 50-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 6E-35 2.1E-39 299.6 21.3 304 5-311 316-715 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 1.8E-34 6.1E-39 279.1 22.7 311 7-317 30-412 (455)
5 3j0a_A TOLL-like receptor 5; m 100.0 4E-34 1.4E-38 296.3 17.8 266 40-317 267-564 (844)
6 2id5_A Lingo-1, leucine rich r 100.0 7.5E-33 2.6E-37 269.3 20.6 308 7-317 32-360 (477)
7 2id5_A Lingo-1, leucine rich r 100.0 4.6E-32 1.6E-36 263.7 21.2 304 9-316 13-336 (477)
8 4eco_A Uncharacterized protein 100.0 2.2E-32 7.5E-37 274.6 19.4 302 5-314 247-601 (636)
9 3v47_A TOLL-like receptor 5B a 100.0 3.7E-31 1.3E-35 255.8 23.8 272 5-296 52-414 (455)
10 3t6q_A CD180 antigen; protein- 100.0 1.1E-31 3.9E-36 268.7 20.6 286 8-315 255-562 (606)
11 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.4E-37 253.3 11.4 230 5-291 74-306 (313)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-31 8.4E-36 266.2 21.7 116 200-316 443-561 (606)
13 1ziw_A TOLL-like receptor 3; i 100.0 9.3E-31 3.2E-35 265.5 24.4 265 5-315 327-624 (680)
14 3o6n_A APL1; leucine-rich repe 100.0 5.3E-31 1.8E-35 249.6 19.1 295 5-315 43-354 (390)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-30 3.9E-35 262.5 22.5 113 203-315 467-582 (635)
16 3j0a_A TOLL-like receptor 5; m 100.0 7E-31 2.4E-35 272.1 21.4 122 203-325 424-566 (844)
17 1xku_A Decorin; proteoglycan, 100.0 9.5E-30 3.2E-34 235.5 26.3 245 8-292 32-278 (330)
18 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-30 1.1E-34 255.1 23.8 125 7-131 26-168 (549)
19 2z63_A TOLL-like receptor 4, v 100.0 1.9E-30 6.6E-35 257.8 22.2 116 200-315 416-533 (570)
20 4ecn_A Leucine-rich repeat pro 100.0 3.2E-30 1.1E-34 264.0 23.9 299 5-312 489-839 (876)
21 3oja_B Anopheles plasmodium-re 100.0 1.3E-30 4.4E-35 260.2 19.6 295 5-315 49-360 (597)
22 4eco_A Uncharacterized protein 100.0 3.3E-31 1.1E-35 266.1 14.0 299 5-312 204-578 (636)
23 3t6q_A CD180 antigen; protein- 100.0 4.4E-30 1.5E-34 257.2 21.2 271 5-294 276-564 (606)
24 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-29 5.6E-34 234.1 23.0 246 8-294 34-281 (332)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-29 5.6E-34 248.4 23.7 110 202-315 371-483 (520)
26 4fcg_A Uncharacterized protein 100.0 6.1E-30 2.1E-34 236.2 19.1 227 5-290 79-314 (328)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-29 7.9E-34 249.6 24.6 135 7-149 31-181 (562)
28 4ecn_A Leucine-rich repeat pro 100.0 3.4E-30 1.2E-34 263.9 17.5 297 5-312 446-818 (876)
29 3zyi_A Leucine-rich repeat-con 100.0 2.5E-29 8.5E-34 242.7 22.6 203 42-291 102-304 (452)
30 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.2E-34 232.2 19.0 247 10-314 10-262 (306)
31 1ozn_A Reticulon 4 receptor; N 100.0 6.7E-30 2.3E-34 231.5 16.5 228 10-294 14-242 (285)
32 3zyj_A Leucine-rich repeat-con 100.0 4.6E-29 1.6E-33 240.0 22.9 236 9-291 45-293 (440)
33 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-28 9.9E-33 247.2 29.6 322 6-330 221-634 (680)
34 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-29 1.1E-33 246.4 21.6 292 10-310 3-431 (520)
35 4fmz_A Internalin; leucine ric 100.0 1.2E-28 4.2E-33 229.6 23.7 290 5-311 42-344 (347)
36 3zyj_A Leucine-rich repeat-con 100.0 1.1E-28 3.7E-33 237.4 24.0 231 39-316 64-295 (440)
37 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4.2E-33 237.8 24.1 251 9-317 56-307 (452)
38 4fcg_A Uncharacterized protein 100.0 4.1E-29 1.4E-33 230.7 18.9 209 39-296 81-296 (328)
39 2z63_A TOLL-like receptor 4, v 100.0 5.5E-29 1.9E-33 247.4 20.9 122 7-128 28-166 (570)
40 3o6n_A APL1; leucine-rich repe 100.0 1.4E-28 4.6E-33 233.0 22.4 281 5-316 67-377 (390)
41 2z66_A Variable lymphocyte rec 100.0 7.8E-29 2.7E-33 226.9 19.8 231 7-292 28-263 (306)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-28 6.6E-33 243.0 23.4 296 7-310 52-460 (562)
43 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-29 2.8E-33 248.0 20.7 265 6-295 284-563 (606)
44 3oja_B Anopheles plasmodium-re 100.0 1.5E-28 5.1E-33 245.2 22.5 282 5-317 73-384 (597)
45 1xku_A Decorin; proteoglycan, 100.0 9.6E-28 3.3E-32 222.0 24.7 247 7-290 52-306 (330)
46 4fmz_A Internalin; leucine ric 100.0 5.3E-28 1.8E-32 225.3 22.8 270 5-290 64-346 (347)
47 2z80_A TOLL-like receptor 2, v 100.0 6.3E-29 2.2E-33 232.1 16.0 267 6-294 30-318 (353)
48 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-28 2E-32 223.6 21.2 246 7-290 54-307 (332)
49 1o6v_A Internalin A; bacterial 100.0 1E-27 3.4E-32 232.4 21.9 288 6-312 67-387 (466)
50 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.2E-33 222.6 14.9 237 6-297 31-268 (285)
51 1wwl_A Monocyte differentiatio 100.0 3.7E-30 1.3E-34 236.2 4.2 237 7-291 43-310 (312)
52 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-28 1.9E-32 239.1 19.6 281 6-290 4-423 (549)
53 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-26 6.5E-31 222.1 26.1 248 5-296 40-305 (457)
54 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-26 6.4E-31 231.8 25.9 285 8-292 53-582 (635)
55 1o6v_A Internalin A; bacterial 100.0 6.5E-27 2.2E-31 226.6 21.8 286 6-311 45-364 (466)
56 2z80_A TOLL-like receptor 2, v 99.9 4.9E-28 1.7E-32 226.1 12.6 257 39-317 52-318 (353)
57 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-26 1.4E-30 219.7 24.7 264 5-311 62-350 (457)
58 2z62_A TOLL-like receptor 4, v 99.9 1.7E-26 5.9E-31 208.0 18.5 209 40-295 29-242 (276)
59 2o6q_A Variable lymphocyte rec 99.9 1.4E-25 4.9E-30 201.3 24.0 204 41-293 18-221 (270)
60 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-27 1.9E-31 215.6 13.2 217 7-290 34-250 (317)
61 1jl5_A Outer protein YOPM; leu 99.9 3.6E-25 1.2E-29 213.1 25.9 260 7-295 91-377 (454)
62 3oja_A Leucine-rich immune mol 99.9 1.2E-26 4E-31 225.5 14.2 217 7-290 34-250 (487)
63 1jl5_A Outer protein YOPM; leu 99.9 3.5E-25 1.2E-29 213.1 23.8 259 8-296 132-417 (454)
64 2z62_A TOLL-like receptor 4, v 99.9 1.1E-25 3.9E-30 202.7 19.1 211 7-269 28-240 (276)
65 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.6E-31 224.5 13.4 218 39-316 34-253 (487)
66 2o6q_A Variable lymphocyte rec 99.9 1.7E-24 5.8E-29 194.3 24.0 205 7-268 16-220 (270)
67 1wwl_A Monocyte differentiatio 99.9 7.6E-27 2.6E-31 214.1 8.2 239 27-312 42-308 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-27 2.2E-31 215.1 7.5 216 40-315 35-252 (317)
69 4glp_A Monocyte differentiatio 99.9 1.2E-25 4E-30 206.1 15.2 206 39-290 91-307 (310)
70 3rfs_A Internalin B, repeat mo 99.9 3.4E-25 1.2E-29 199.1 17.5 201 39-296 41-241 (272)
71 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.4E-29 196.4 21.1 196 42-290 13-208 (290)
72 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.5E-29 196.3 20.4 205 58-315 5-210 (290)
73 3g06_A SSPH2 (leucine-rich rep 99.9 3.2E-24 1.1E-28 212.8 23.6 253 8-295 41-302 (622)
74 3rfs_A Internalin B, repeat mo 99.9 7.2E-25 2.5E-29 197.0 15.8 208 5-277 39-246 (272)
75 3m19_A Variable lymphocyte rec 99.9 5.6E-24 1.9E-28 188.8 17.1 121 204-325 106-232 (251)
76 2xwt_C Thyrotropin receptor; s 99.9 5.6E-24 1.9E-28 187.4 16.5 196 40-287 32-236 (239)
77 3m19_A Variable lymphocyte rec 99.9 6.4E-23 2.2E-27 182.0 20.2 178 42-268 17-194 (251)
78 2xwt_C Thyrotropin receptor; s 99.9 2.1E-23 7.3E-28 183.7 15.7 198 7-264 31-237 (239)
79 1h6u_A Internalin H; cell adhe 99.9 5.7E-23 2E-27 187.8 18.6 191 39-291 41-231 (308)
80 4glp_A Monocyte differentiatio 99.9 1.2E-23 4E-28 192.8 11.3 226 40-312 65-306 (310)
81 3goz_A Leucine-rich repeat-con 99.9 2.5E-24 8.4E-29 201.6 5.8 241 12-292 3-299 (362)
82 2ca6_A RAN GTPase-activating p 99.9 1.9E-25 6.5E-30 211.1 -1.9 242 6-294 31-320 (386)
83 1z7x_W Ribonuclease inhibitor; 99.9 3.9E-25 1.3E-29 213.9 -1.6 270 8-291 86-412 (461)
84 1h6u_A Internalin H; cell adhe 99.9 1.5E-22 5.3E-27 185.0 15.8 194 5-268 39-232 (308)
85 2ast_B S-phase kinase-associat 99.9 1.5E-24 5.2E-29 200.9 1.6 202 40-287 71-282 (336)
86 1z7x_W Ribonuclease inhibitor; 99.9 8.8E-25 3E-29 211.4 -3.2 286 5-311 54-409 (461)
87 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-21 4.8E-26 193.9 19.6 239 7-277 61-308 (622)
88 3cvr_A Invasion plasmid antige 99.9 9.7E-22 3.3E-26 192.8 17.9 182 40-295 60-248 (571)
89 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 168.1 14.8 175 42-296 10-184 (208)
90 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.9E-27 188.3 6.7 210 39-296 93-312 (336)
91 4ay9_X Follicle-stimulating ho 99.9 8.5E-21 2.9E-25 176.7 18.8 235 10-304 12-250 (350)
92 4ay9_X Follicle-stimulating ho 99.9 6.9E-21 2.4E-25 177.3 17.6 223 7-287 30-256 (350)
93 2o6s_A Variable lymphocyte rec 99.9 3E-21 1E-25 166.1 14.0 194 10-271 10-203 (208)
94 3goz_A Leucine-rich repeat-con 99.9 6.6E-23 2.2E-27 191.9 2.8 212 39-290 22-266 (362)
95 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.5E-28 197.9 -1.6 236 39-314 32-317 (386)
96 3cvr_A Invasion plasmid antige 99.9 1.5E-20 5.3E-25 184.3 18.0 188 8-277 60-254 (571)
97 2v9t_B SLIT homolog 2 protein 99.8 2.3E-19 8E-24 155.6 17.0 66 225-290 100-165 (220)
98 1h6t_A Internalin B; cell adhe 99.8 6.8E-20 2.3E-24 166.0 14.1 170 61-290 44-213 (291)
99 2xot_A Amphoterin-induced prot 99.8 5.6E-20 1.9E-24 171.8 13.6 106 42-152 21-127 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-19 6.2E-24 156.3 15.7 91 204-294 80-170 (220)
101 1h6t_A Internalin B; cell adhe 99.8 1.8E-19 6.1E-24 163.2 15.9 171 39-269 46-216 (291)
102 2xot_A Amphoterin-induced prot 99.8 7.8E-20 2.7E-24 170.9 13.3 130 10-152 21-151 (361)
103 3e6j_A Variable lymphocyte rec 99.8 5.7E-19 1.9E-23 154.1 17.7 155 64-292 20-174 (229)
104 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.1E-24 179.2 15.3 81 204-290 130-210 (605)
105 3e6j_A Variable lymphocyte rec 99.8 7.8E-19 2.7E-23 153.3 17.9 156 41-270 21-176 (229)
106 2v9t_B SLIT homolog 2 protein 99.8 3.9E-19 1.3E-23 154.2 15.4 64 204-267 103-166 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 8.5E-19 2.9E-23 152.0 16.9 145 10-156 14-172 (220)
108 1m9s_A Internalin B; cell inva 99.8 4.6E-19 1.6E-23 175.6 15.2 194 9-272 23-216 (605)
109 1xeu_A Internalin C; cellular 99.8 1.8E-19 6.3E-24 160.6 8.3 80 206-291 107-186 (263)
110 4ezg_A Putative uncharacterize 99.8 2.2E-18 7.4E-23 146.8 13.5 83 204-290 111-194 (197)
111 1xeu_A Internalin C; cellular 99.8 6.7E-19 2.3E-23 157.0 9.3 167 42-269 22-188 (263)
112 4ezg_A Putative uncharacterize 99.8 1.9E-18 6.4E-23 147.2 11.0 155 59-267 40-195 (197)
113 4b8c_D Glucose-repressible alc 99.8 8.5E-20 2.9E-24 185.2 2.8 134 7-150 173-306 (727)
114 1dce_A Protein (RAB geranylger 99.8 6E-21 2E-25 188.0 -5.9 89 204-295 462-551 (567)
115 3ogk_B Coronatine-insensitive 99.8 7.8E-20 2.7E-24 182.2 2.1 116 5-122 162-304 (592)
116 3ogk_B Coronatine-insensitive 99.8 8.6E-20 3E-24 181.9 2.3 139 9-151 140-307 (592)
117 1w8a_A SLIT protein; signaling 99.7 2.2E-18 7.4E-23 146.2 8.2 91 204-294 53-143 (192)
118 1dce_A Protein (RAB geranylger 99.7 4.7E-20 1.6E-24 181.6 -5.5 197 35-284 345-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 6.9E-17 2.4E-21 136.8 14.7 134 10-156 11-145 (192)
120 4b8c_D Glucose-repressible alc 99.7 2.9E-18 9.8E-23 174.0 6.4 137 7-157 191-336 (727)
121 2p1m_B Transport inhibitor res 99.7 5.6E-19 1.9E-23 176.1 -1.8 283 5-290 154-519 (594)
122 2wfh_A SLIT homolog 2 protein 99.7 5.5E-16 1.9E-20 131.3 15.8 131 10-154 13-143 (193)
123 2p1m_B Transport inhibitor res 99.7 1.1E-18 3.6E-23 174.1 -1.5 305 5-311 103-517 (594)
124 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.8E-21 147.5 11.8 207 62-296 100-315 (329)
125 2ell_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 133.2 9.2 136 5-152 22-162 (168)
126 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4E-21 132.4 9.4 43 224-266 115-160 (168)
127 2o6r_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 127.7 15.2 133 9-154 9-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.7 8.3E-17 2.8E-21 130.5 6.4 107 42-152 20-128 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 2E-15 6.9E-20 127.8 13.9 107 42-154 13-119 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 126.5 8.9 130 5-146 15-149 (149)
131 2o6r_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 124.0 13.7 91 204-294 51-141 (177)
132 3sb4_A Hypothetical leucine ri 99.6 2.2E-14 7.6E-19 132.0 12.9 225 39-296 49-291 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.6 4E-15 1.4E-19 124.1 7.1 62 84-150 16-77 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-15 1.2E-19 124.5 6.4 134 5-151 17-154 (176)
135 3g39_A Variable lymphocyte rec 99.6 3.9E-14 1.3E-18 117.3 12.6 107 42-153 12-118 (170)
136 3g39_A Variable lymphocyte rec 99.5 7.2E-14 2.4E-18 115.7 12.7 108 8-126 10-117 (170)
137 1ds9_A Outer arm dynein; leuci 99.5 5.5E-17 1.9E-21 138.2 -6.6 85 62-151 17-107 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 4.8E-17 1.6E-21 138.6 -7.1 105 40-151 19-129 (198)
139 2r9u_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 115.7 12.6 107 42-153 15-121 (174)
140 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 113.0 12.8 106 9-125 14-119 (174)
141 4fdw_A Leucine rich hypothetic 99.5 2E-12 6.9E-17 121.8 20.2 241 7-290 113-358 (401)
142 4fdw_A Leucine rich hypothetic 99.4 5.6E-12 1.9E-16 118.8 19.0 248 7-290 135-383 (401)
143 2ifg_A High affinity nerve gro 99.4 4.3E-12 1.5E-16 117.6 12.1 107 43-154 12-120 (347)
144 3un9_A NLR family member X1; l 99.3 2.3E-14 7.8E-19 133.8 -4.5 165 87-291 72-253 (372)
145 3un9_A NLR family member X1; l 99.3 1.7E-14 5.9E-19 134.6 -6.4 188 63-290 72-283 (372)
146 2ifg_A High affinity nerve gro 99.3 7.1E-12 2.4E-16 116.1 10.7 105 10-125 11-117 (347)
147 4fs7_A Uncharacterized protein 99.1 2.2E-09 7.6E-14 101.0 17.0 86 199-287 291-376 (394)
148 2ra8_A Uncharacterized protein 99.0 4.1E-11 1.4E-15 110.9 1.0 15 252-266 278-292 (362)
149 2ra8_A Uncharacterized protein 98.9 8.5E-10 2.9E-14 102.1 5.2 83 204-288 251-341 (362)
150 4fs7_A Uncharacterized protein 98.8 4.1E-08 1.4E-12 92.4 14.5 268 5-282 69-393 (394)
151 4gt6_A Cell surface protein; l 98.6 3.7E-06 1.3E-10 78.9 19.7 270 8-289 65-369 (394)
152 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.2E-13 84.1 0.6 63 228-290 92-164 (185)
153 4gt6_A Cell surface protein; l 98.4 8.3E-06 2.9E-10 76.5 17.5 88 197-287 257-344 (394)
154 1io0_A Tropomodulin; LRR prote 98.4 9.1E-08 3.1E-12 79.8 3.2 116 5-124 34-164 (185)
155 4h09_A Hypothetical leucine ri 98.4 3.3E-05 1.1E-09 71.9 20.5 85 200-286 258-342 (379)
156 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.5E-12 82.5 4.0 66 227-294 168-237 (267)
157 3rw6_A Nuclear RNA export fact 98.4 2.9E-07 9.8E-12 80.9 4.7 99 44-144 148-258 (267)
158 4h09_A Hypothetical leucine ri 98.1 0.00079 2.7E-08 62.5 23.1 87 199-287 234-320 (379)
159 3e4g_A ATP synthase subunit S, 98.1 6E-07 2.1E-11 73.2 0.9 84 205-288 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 9.4E-07 3.2E-11 72.1 0.7 92 55-148 53-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 7.8E-05 2.7E-09 61.9 1.1 85 205-289 70-169 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00097 3.3E-08 51.6 6.8 36 254-289 32-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00021 7.3E-09 59.3 2.9 112 7-123 41-169 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0013 4.4E-08 50.8 6.6 55 43-99 12-67 (130)
165 2lz0_A Uncharacterized protein 74.3 9.4 0.00032 27.3 6.3 39 81-120 14-52 (100)
166 2lz0_A Uncharacterized protein 69.0 7.7 0.00026 27.7 4.8 48 49-97 6-53 (100)
167 2ks1_B Epidermal growth factor 35.4 13 0.00044 22.0 0.9 6 354-359 16-21 (44)
168 2jwa_A Receptor tyrosine-prote 27.3 5.9 0.0002 23.5 -1.5 13 356-368 18-30 (44)
169 2k9y_A Ephrin type-A receptor 27.3 8.7 0.0003 22.2 -0.8 9 353-361 17-25 (41)
170 2k1k_A Ephrin type-A receptor 24.1 14 0.00046 21.1 -0.3 10 354-363 15-24 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-42 Score=353.07 Aligned_cols=322 Identities=31% Similarity=0.489 Sum_probs=203.1
Q ss_pred CCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 69 (403)
+++|++|++++|.+++..| ..+++|+.|++++| ++|++|++++|.+++.+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 3444555555555444443 33444555555554 4455555555555555555555555555555
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015663 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (403)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 149 (403)
+++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+ +.+++|+.|++++|.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence 55555555555555555555555555555555555555555555555555555555555443 5555555555555555
Q ss_pred ccccchhhhhhhhhhcccCCCc-cccccc------------------CCCC--------CCCcceEEEEEEeccchhhhh
Q 015663 150 TGVLLTGYLDNFKAMMHGNNIS-VEVDYM------------------TPLN--------SSNYYESIILTIKGIDIKMER 202 (403)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~-~~~~~~------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~ 202 (403)
++.+|..++.. ..+....... .....+ .... .............+..+..+.
T Consensus 551 ~g~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 551 NGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp ESBCCGGGGTT-TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred CCcCChHHhcc-cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 55555442221 1111100000 000000 0000 000000000011122223344
Q ss_pred hcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015663 203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282 (403)
Q Consensus 203 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 282 (403)
.++.|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015663 283 NLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPV 331 (403)
Q Consensus 283 ~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C~~~~~~~~~ 331 (403)
|+++|+++|.||...++.++...++.||+++||.|.. .|.......+.
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYA 757 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCC
Confidence 9999999999999999999999999999999999976 88776554443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.3e-38 Score=288.02 Aligned_cols=259 Identities=28% Similarity=0.449 Sum_probs=227.0
Q ss_pred CCccEEECCCCCCCC--cCCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663 7 ATLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~--~~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
.+++.|+|++|.+++ ..|..+.+++.| ++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L--------~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTC--------SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCC--------CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 578899999999988 666666666555 8889985 88888889999999999999999999988888889
Q ss_pred cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC-CccEEEccCCccccccchhhhhhhh
Q 015663 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFK 162 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (403)
.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+ ..++ +|++|++++|.+++..+..+.
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~---- 195 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFA---- 195 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGG----
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHh----
Confidence 999999999999999988888889999999999999999987888765 7777 899999999988876654421
Q ss_pred hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
.+. |+.|++++|.+++..|..+..+++|+.|++++|.++
T Consensus 196 ----------------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 196 ----------------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ----------------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ----------------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 134 899999999999999999999999999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 015663 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC 322 (403)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C 322 (403)
+.+|. +..+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 76665 88899999999999999999999999999999999999999999999888888999999999999998875 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-35 Score=299.57 Aligned_cols=304 Identities=25% Similarity=0.353 Sum_probs=178.8
Q ss_pred CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-------------C-CCCEEECcCCcCcccCCccccC--CCC
Q 015663 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------L-THKVLDMRMNNFNGKIPRKFVK--SCN 64 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-------------~-~L~~L~Ls~n~l~~~~p~~~~~--l~~ 64 (403)
++++|++|++++|.+++.+| ..+++|+.|++++| + +|++|++++|.+++.+|..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 34566666666666654444 44555666666655 1 5555555555555544444443 444
Q ss_pred cCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEc
Q 015663 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144 (403)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 144 (403)
|++|++++|++++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L 473 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLIL 473 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEe
Confidence 5555555555554455555555555555555555544444445555555555555555544444433 44444555555
Q ss_pred cCCccccccchhhhhhhhhhcccCCCcccccccCC--CCCCCcceEEEEE---EeccchhhhhhcccceEEEcccCcccc
Q 015663 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQG 219 (403)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 219 (403)
++|.+++..|.. +.+++.|+.++..........+ ......+..+... +.+..+.....+++|+.|++++|.++|
T Consensus 474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 555544444433 3333333333322211110000 0000111111111 111223334456777777777777776
Q ss_pred cCCc----------------------------------------------------------------------ccCCCC
Q 015663 220 GIPE----------------------------------------------------------------------VVGKLN 229 (403)
Q Consensus 220 ~~p~----------------------------------------------------------------------~~~~l~ 229 (403)
.+|. .++.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 6654 344567
Q ss_pred CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC-CCCCCCCCcCC
Q 015663 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS-QFNTFPNDSYV 308 (403)
Q Consensus 230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~-~~~~~~~~~~~ 308 (403)
+|+.|+|++|+++|.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++|.+|... .+..+..+++.
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 89999999999999999999999999999999999999999999999999999999999999999863 34455556666
Q ss_pred CCC
Q 015663 309 GNS 311 (403)
Q Consensus 309 gn~ 311 (403)
+|.
T Consensus 713 ~N~ 715 (768)
T 3rgz_A 713 NNN 715 (768)
T ss_dssp SSE
T ss_pred CCc
Confidence 664
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-34 Score=279.07 Aligned_cols=311 Identities=20% Similarity=0.176 Sum_probs=232.1
Q ss_pred CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 69 (403)
++|++|+|++|.++++.| ..+++|+.|++++| ++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 579999999999999876 67788999999887 6899999999999988899999999999999
Q ss_pred ccCCcCcCCCCcc--ccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEEcccccccCcCCCCCCc-------------
Q 015663 70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTI------------- 133 (403)
Q Consensus 70 L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~------------- 133 (403)
+++|++++..|.. |.++++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+.-
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 888999999999999999877765 788999999999999987776654411
Q ss_pred -------------------cCCCCccEEEccCCccccccchhhhhhh--hhhcccCCCcccc-------cccCCCC----
Q 015663 134 -------------------VPFPSLRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEV-------DYMTPLN---- 181 (403)
Q Consensus 134 -------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~~~~~~~~~-------~~~~~~~---- 181 (403)
..+++|++|++++|.+++..+..+...+ ..++.+....... ..+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 1235677777777777765554432211 2222222111000 0000000
Q ss_pred ---CCCcceEEEEEE---eccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCC
Q 015663 182 ---SSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV 255 (403)
Q Consensus 182 ---~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 255 (403)
....+..+.... ....+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 001122222222 22234455668899999999999998889999999999999999999987778899999999
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCCC
Q 015663 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~~ 317 (403)
++|++++|++++..|..+..+++|++|++++|++++..+.. ..+..+..+.+.+|+..|..|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999888999999999999999999999644433 345566777777877776544
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=296.34 Aligned_cols=266 Identities=20% Similarity=0.220 Sum_probs=162.2
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|+.|++++|.+.+..|..|..+++|+.|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 56666777776666666666777777777777777776666667777777777777777766666667777777777777
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC-------------------
Q 015663 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL------------------- 180 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~------------------- 180 (403)
+|.+.+..+..+ ..+++|++|++++|.+++... ..+++.+... ......+...
T Consensus 347 ~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~---~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 347 KNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF---IPSIPDIFLS---GNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp SCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS---CCSCSEEEEE---SCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCCCccChhhh--cCCCCCCEEECCCCCCCcccC---CCCcchhccC---CCCcccccccccccceeecccCccccCch
Confidence 777655444433 666777777777776664322 1112111111 1000000000
Q ss_pred ----CCCCcceEEEEEEeccc----hhhhhhcccceEEEcccCccc-----ccCCcccCCCCCCCEEEecCCCCCCCcCc
Q 015663 181 ----NSSNYYESIILTIKGID----IKMERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNLTGDIPS 247 (403)
Q Consensus 181 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 247 (403)
.....+..+....+.+. ...+..+++|+.|++++|.++ +..+..+..+++|+.|+|++|++++..|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 00111222222222221 111222455566666666554 23345566777788888888888777777
Q ss_pred cccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 015663 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 248 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~ 317 (403)
.+.++++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|.. +..+..+.+.|||+.|.++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 778888888888888888866666555 77888888888888777754 4466777788999888543
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=269.30 Aligned_cols=308 Identities=19% Similarity=0.162 Sum_probs=218.5
Q ss_pred CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 70 (403)
++++.|+|++|.++++.+ ..+++|+.|+|++| ++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 478999999999998876 56788999999988 68999999999999766677899999999999
Q ss_pred cCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
++|++++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcCc
Confidence 9999998888889999999999999999999888889999999999999999876544433 78899999999999988
Q ss_pred cccchhhhhhhhhhcccCCCcccc-cccCC-CCCCCcceEEEEEE---eccchhhhhhcccceEEEcccCcccccCCccc
Q 015663 151 GVLLTGYLDNFKAMMHGNNISVEV-DYMTP-LNSSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225 (403)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 225 (403)
+..+.. +..++.|+.+....... ..+.. ......+..+.... ..++...+..+++|+.|++++|.+++..+..+
T Consensus 190 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 765533 45555555544322110 00000 00001222233222 22333344556777777777777777677777
Q ss_pred CCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCC
Q 015663 226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305 (403)
Q Consensus 226 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~ 305 (403)
..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+....+......
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~ 348 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc
Confidence 77777777777777777666777777777777777777777666666777777777777777776543221111112223
Q ss_pred cCCCCCCCCCCC
Q 015663 306 SYVGNSGLCGFP 317 (403)
Q Consensus 306 ~~~gn~~lc~~~ 317 (403)
.+.++...|..|
T Consensus 349 ~~~~~~~~C~~p 360 (477)
T 2id5_A 349 NFNRQQPTCATP 360 (477)
T ss_dssp CCTTCCCBEEES
T ss_pred ccCccCceeCCc
Confidence 445555566544
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=263.73 Aligned_cols=304 Identities=17% Similarity=0.126 Sum_probs=243.5
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (403)
-+.++.+++.++.++.....+++.|+|++| ++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 357899999999887766789999999998 7899999999999988899999999999999999999
Q ss_pred cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (403)
Q Consensus 76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 155 (403)
++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCCCSSCCHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCcCcccChh
Confidence 96666678999999999999999999889999999999999999999987777665 8899999999999999876543
Q ss_pred hhhhhhhhhcccCCCcccccccCC--CCCCCcceEEEEEEec----cchhhhhhcccceEEEcccCcccccCCcccCCCC
Q 015663 156 GYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKG----IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (403)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 229 (403)
.+..++.|+.+.........+.. ......+..+...... +...... ..+|+.|++++|.+++..+..+..++
T Consensus 171 -~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 171 -ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp -HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred -HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCcc
Confidence 35666666666553333222211 1112223333333221 1112222 34899999999999965557889999
Q ss_pred CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCC
Q 015663 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYV 308 (403)
Q Consensus 230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~ 308 (403)
+|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 9999999999999877888999999999999999999989999999999999999999999544332 234566777788
Q ss_pred CCCCCCCC
Q 015663 309 GNSGLCGF 316 (403)
Q Consensus 309 gn~~lc~~ 316 (403)
+|++.|.+
T Consensus 329 ~N~l~c~c 336 (477)
T 2id5_A 329 SNPLACDC 336 (477)
T ss_dssp SSCEECSG
T ss_pred CCCccCcc
Confidence 88887753
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-32 Score=274.60 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=226.0
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC---------------------CCCCEEECcCCcCcccCCc--c
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K 58 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------------~~L~~L~Ls~n~l~~~~p~--~ 58 (403)
++++|++|+|++|.+.+..| ..+++|+.|++++| ++|++|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 58899999999999999888 56788999999988 47899999999998 8888 8
Q ss_pred ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCC-CcEEEcccccccCcCCCCCCccCCC
Q 015663 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP 137 (403)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~ 137 (403)
|+++++|++|++++|+++|.+| .|.++++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 9999999999999999998888 8888889999999999888 47888888888 999999988886 667655222344
Q ss_pred CccEEEccCCccccccchhhhh------hhhhhcccCCCcccccccCCC--CCCCcceEEEEEEe---ccchhhhhh---
Q 015663 138 SLRIIDLSHNEFTGVLLTGYLD------NFKAMMHGNNISVEVDYMTPL--NSSNYYESIILTIK---GIDIKMERI--- 203 (403)
Q Consensus 138 ~L~~L~l~~n~l~~~~~~~~~~------~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~--- 203 (403)
+|++|++++|.+++..|..+.. .+..|+.+.........++.. .....+..+....+ .++...+..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 7888888888888766544220 233444433322222211110 00111222222221 222222221
Q ss_pred ----cccceEEEcccCcccccCCcccC--CCCCCCEEEecCCCCCCCcCccccCCCCCCEEec------cCCcCCCCCCc
Q 015663 204 ----LTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDL------SSNMLVGHIPT 271 (403)
Q Consensus 204 ----~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L------s~n~l~~~~p~ 271 (403)
+++|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 238999999999999 7887776 89999999999999996 8888999999999999 56778888999
Q ss_pred cccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCC
Q 015663 272 QLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC 314 (403)
Q Consensus 272 ~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc 314 (403)
.+..+++|+.|++++|++ +.+|.... ..+..+.+.+|+..|
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 999999999999999999 68888743 677777788887766
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=3.7e-31 Score=255.77 Aligned_cols=272 Identities=21% Similarity=0.231 Sum_probs=220.0
Q ss_pred CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCcc--ccCCCCc
Q 015663 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCNL 65 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~--~~~l~~L 65 (403)
++++|++|++++|.+.+.++ ..+++|+.|++++| ++|++|++++|.+++..|.. |..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 67899999999999875543 56789999999998 78999999999998766555 8899999
Q ss_pred CEEEccCCcCcCCCCcc-ccCCCCCCEEEccCCcCCcCCChhccCC----------------------------------
Q 015663 66 TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEIL---------------------------------- 110 (403)
Q Consensus 66 ~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l---------------------------------- 110 (403)
++|++++|++++..|.. |.++++|++|++++|.+++..|..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999777776 8899999999999999988777665443
Q ss_pred CCCcEEEcccccccCcCCCCC-----------------------------------Ccc--CCCCccEEEccCCcccccc
Q 015663 111 PELQVLILRSNRFWGPIGENT-----------------------------------TIV--PFPSLRIIDLSHNEFTGVL 153 (403)
Q Consensus 111 ~~L~~L~l~~n~l~~~~~~~~-----------------------------------~~~--~l~~L~~L~l~~n~l~~~~ 153 (403)
++|++|++++|++++..+..+ .+. ..++|++|++++|.+++..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 678888888887754322110 011 2368999999999999876
Q ss_pred chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCE
Q 015663 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (403)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 233 (403)
+.. +..++.|+.++...... ....+..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus 292 ~~~-~~~l~~L~~L~Ls~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 292 KSV-FSHFTDLEQLTLAQNEI-------------------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp TTT-TTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred hhh-cccCCCCCEEECCCCcc-------------------cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 654 55666666655422221 1222334455889999999999999888999999999999
Q ss_pred EEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 234 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999888999999999999999999999877778899999999999999999988854
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.1e-31 Score=268.65 Aligned_cols=286 Identities=21% Similarity=0.198 Sum_probs=217.0
Q ss_pred CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (403)
+|+.|++++|.++++++ ..+++|+.|++++| ++|++|++++|.+++..|..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78899999999998887 45677778877777 5778888888888776777777888888888888
Q ss_pred CcCcCCCCcc-ccCCCCCCEEEccCCcCCcCC--ChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015663 73 NRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (403)
Q Consensus 73 n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 149 (403)
|.+.+.+|.. +.++++|++|++++|.+++.. |..+..+++|++|++++|++.+..+..+ ..+++|++|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence 8777655543 777888888888888877654 6677778888888888887776666655 6777888888888887
Q ss_pred ccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc---CCcccC
Q 015663 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG---IPEVVG 226 (403)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~ 226 (403)
++..+...+..++.|+.+...... +....+..+..+++|+.|++++|.+++. .+..+.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSL-------------------LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCC-------------------CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred CCcccchhhhCcccCCEEECCCCc-------------------cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 766555545555555555442221 1122233344578999999999999863 336688
Q ss_pred CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCC
Q 015663 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPND 305 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~ 305 (403)
.+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 99999999999999998888999999999999999999999999999999999 9999999999766653 223455666
Q ss_pred cCCCCCCCCC
Q 015663 306 SYVGNSGLCG 315 (403)
Q Consensus 306 ~~~gn~~lc~ 315 (403)
.+.+|++.|.
T Consensus 553 ~l~~N~~~c~ 562 (606)
T 3t6q_A 553 NLRQNPLDCT 562 (606)
T ss_dssp ECTTCCEECS
T ss_pred eCCCCCcccc
Confidence 6777766663
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1e-32 Score=253.34 Aligned_cols=230 Identities=26% Similarity=0.364 Sum_probs=207.9
Q ss_pred CCCCccEEECCC-CCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663 5 GIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 5 ~~~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
++++|++|++++ |.+.+..|..+.+++.| ++|++++|.+++.+|..|.++++|++|++++|.+++.+|..|
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L--------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTC--------SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCC--------CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 578999999995 99998888766666655 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCCcCCChhccCCC-CCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663 84 VNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (403)
.++++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+ ..++ |++|++++|.+++..+..+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~N~l~~~~~~~~----- 217 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVLF----- 217 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGGC-----
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcCCcccCcCCHHH-----
Confidence 9999999999999999988999999998 99999999999998888866 6676 9999999999987655431
Q ss_pred hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
..+++|+.|++++|.+++.+|. +..+++|++|++++|+++
T Consensus 218 ---------------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 218 ---------------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ---------------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ---------------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 1267899999999999977766 788999999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCc-Ccc
Q 015663 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ-FEG 291 (403)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~ 291 (403)
+.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999999999999986 889999999999998 555
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=2.5e-31 Score=266.24 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=85.2
Q ss_pred hhhhcccceEEEcccCcccc-cCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 200 MERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
.+..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..+.++++|+.|++++|++++.+|..+..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 34456777777887777776 36777788888888888888888777777888888888888888888777888888888
Q ss_pred CCEEeCcCCcCccCCCCCC-CCC-CCCCCcCCCCCCCCCC
Q 015663 279 LSVLNLSYNQFEGPIPRGS-QFN-TFPNDSYVGNSGLCGF 316 (403)
Q Consensus 279 L~~L~L~~N~l~~~ip~~~-~~~-~~~~~~~~gn~~lc~~ 316 (403)
|+.|++++|+++ .+|... .+. .+..+.+.+|++.|++
T Consensus 523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 888888888887 566542 222 3555566677666643
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.3e-31 Score=265.53 Aligned_cols=265 Identities=20% Similarity=0.174 Sum_probs=206.6
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCcccCCccccCCCC
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN 64 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~~~l~~ 64 (403)
.+++|++|++++|.++++.+ ..+++|+.|++++| ++|+.|++++|.+++..|.+|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 46778888888888888776 45677888888876 37888888888888777888888888
Q ss_pred cCEEEccCCcCcCCCC-ccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc--CcCCCCCCccCCCCccE
Q 015663 65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI 141 (403)
Q Consensus 65 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~ 141 (403)
|++|++++|.+++.+| ..|.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+ ..+++|+.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence 8888888888876555 57888888888888888888877778888888888888888775 3455554 77888888
Q ss_pred EEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccC
Q 015663 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (403)
Q Consensus 142 L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 221 (403)
|++++|.+++..+.. +..+++|+.|++++|.+++..
T Consensus 485 L~Ls~N~l~~i~~~~--------------------------------------------~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 485 LDLSNNNIANINDDM--------------------------------------------LEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp EECCSSCCCCCCTTT--------------------------------------------TTTCTTCCEEECCSSCCGGGG
T ss_pred EECCCCCCCcCChhh--------------------------------------------hccccccCEEeCCCCCccccc
Confidence 888888887654432 122678899999999988542
Q ss_pred --------CcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCC
Q 015663 222 --------PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293 (403)
Q Consensus 222 --------p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i 293 (403)
+..+..+++|+.|+|++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 234788899999999999998544457889999999999999999777777889999999999999998665
Q ss_pred CCCC--CCCCCCCCcCCCCCCCCC
Q 015663 294 PRGS--QFNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 294 p~~~--~~~~~~~~~~~gn~~lc~ 315 (403)
|... .+..+....+.+||+.|+
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBC
T ss_pred hhHhcccccccCEEEccCCCcccC
Confidence 5432 345566667777777774
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.3e-31 Score=249.61 Aligned_cols=295 Identities=20% Similarity=0.180 Sum_probs=194.4
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
.+++++.|++++|.++.+++ ..+++|+.|++++| ++|++|++++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45788888888888887766 34566666666665 466777777777776666667777777777
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 148 (403)
++++|+++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++. + +..+++|+.|++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeeccccc
Confidence 7777777733333356677777777777777766666677777777777777766442 1 2455666666666666
Q ss_pred cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc-hhhhhhcccceEEEcccCcccccCCcccCC
Q 015663 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGK 227 (403)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 227 (403)
+++.... .+++.| .........+.. .....+..+....+.+. ......+++|+.|++++|.+++..|..+..
T Consensus 198 l~~~~~~---~~L~~L---~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 198 LSTLAIP---IAVEEL---DASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CSEEECC---SSCSEE---ECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccCCC---CcceEE---ECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 5543211 112211 111111111100 00011122222211111 123455889999999999999888999999
Q ss_pred CCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcC
Q 015663 228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSY 307 (403)
Q Consensus 228 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~ 307 (403)
+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++. +| ...+..+..+.+
T Consensus 271 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l 346 (390)
T 3o6n_A 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTL 346 (390)
T ss_dssp CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEEC
T ss_pred cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEc
Confidence 999999999999998 46777788999999999999998 567778889999999999999984 44 234556667777
Q ss_pred CCCCCCCC
Q 015663 308 VGNSGLCG 315 (403)
Q Consensus 308 ~gn~~lc~ 315 (403)
.+|++-|.
T Consensus 347 ~~N~~~~~ 354 (390)
T 3o6n_A 347 SHNDWDCN 354 (390)
T ss_dssp CSSCEEHH
T ss_pred CCCCccch
Confidence 77777663
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-30 Score=262.48 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=94.7
Q ss_pred hcccceEEEcccCcc-cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663 203 ILTIFMTIDLSSNKF-QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 203 ~~~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
.++.++.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|+++++|+.|+|++|++++..|..|..+++|+.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 355677888888874 3457788999999999999999999888999999999999999999999888999999999999
Q ss_pred EeCcCCcCccCCCCCCC-C-CCCCCCcCCCCCCCCC
Q 015663 282 LNLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLCG 315 (403)
Q Consensus 282 L~L~~N~l~~~ip~~~~-~-~~~~~~~~~gn~~lc~ 315 (403)
||+++|++++..|.... + ..+..+.+.+||+.|.
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999988777542 2 3566667777777663
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=272.07 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=92.5
Q ss_pred hcccceEEEcccCcccccCCc-ccCCCCCCCEEEecCCCCC-----CCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015663 203 ILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLT-----GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276 (403)
Q Consensus 203 ~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 276 (403)
.+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..+.++++|+.|+|++|++++..|..+..+
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 477888888888888855443 3556788999999999886 3445678889999999999999999999999999
Q ss_pred CCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCC---------------CCCCCCCCCCCCCC
Q 015663 277 KYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS---------------GLCGFPLLESCNID 325 (403)
Q Consensus 277 ~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~---------------~lc~~~~~~~C~~~ 325 (403)
++|+.|+|++|++++..|.... ..+..+++.+|. .+.++|+.|+|...
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCC
T ss_pred hhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccH
Confidence 9999999999999965444332 344433333332 23468899999764
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.5e-30 Score=235.49 Aligned_cols=245 Identities=21% Similarity=0.254 Sum_probs=158.2
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
+++.++++++.++.++....+++ ++|++++|.+++..+..|+++++|++|++++|++++..|..|.+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l-----------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDT-----------ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTC-----------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccccCccCCCCC-----------eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 67888888888877654333444 4555555555544444555555555555555555544455555555
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc--ccchhhhhhhhhhc
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG--VLLTGYLDNFKAMM 165 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~ 165 (403)
+|++|++++|.++. +|..+. ++|++|++++|.+++..+..+ ..+++|++|++++|.+.. ..+ ..+..++.|+
T Consensus 101 ~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~ 174 (330)
T 1xku_A 101 KLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLS 174 (330)
T ss_dssp TCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCC
T ss_pred CCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECCCCcCCccCcCh-hhccCCCCcC
Confidence 55555555555554 333322 455555555555543333222 455555555555555542 111 1233333333
Q ss_pred ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 245 (403)
.+.........+. . ...++|+.|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 175 ~L~l~~n~l~~l~-------------------~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 175 YIRIADTNITTIP-------------------Q---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp EEECCSSCCCSCC-------------------S---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred EEECCCCccccCC-------------------c---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 3332111111000 0 01367999999999999888999999999999999999999777
Q ss_pred CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 778999999999999999999 7888899999999999999999854
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.3e-30 Score=255.06 Aligned_cols=125 Identities=23% Similarity=0.201 Sum_probs=98.3
Q ss_pred CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 70 (403)
++|++|++++|.++++.| ..+++|+.|++++| ++|++|++++|.+++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578899999999888866 56778888888887 67888888888888777777888888888888
Q ss_pred cCCcCcC-CCCccccCCCCCCEEEccCCc-CCcCCChhccCCCCCcEEEcccccccCcCCCCC
Q 015663 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT 131 (403)
Q Consensus 71 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 131 (403)
++|++++ ..|..|+++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 8888875 356678888888888888887 444334577888888888888888877666544
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=257.80 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=88.9
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC-CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
.+..+++|+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 3445777888888888888778888888888888888888886 467888888888888888888888777888888888
Q ss_pred CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCC
Q 015663 279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~ 315 (403)
|+.|++++|++++..|.. ..+..+..+.+.+|+..|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 888888888888665543 2344555566666666554
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.2e-30 Score=264.02 Aligned_cols=299 Identities=18% Similarity=0.179 Sum_probs=214.1
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCCC----------------------CCCEEECcCCcCcccCCc--
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR-- 57 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~----------------------~L~~L~Ls~n~l~~~~p~-- 57 (403)
++++|++|+|++|.+.+..| ..+++|+.|++++|. +|+.|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 68999999999999998888 678899999999995 8999999999999 8888
Q ss_pred cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCC-CcEEEcccccccCcCCCCCCccCC
Q 015663 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF 136 (403)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l 136 (403)
.|+++++|+.|++++|+++ .+| .|.++++|+.|++++|.++ .+|..+..+++ |+.|++++|+++ .+|..+.....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999999 888 8999999999999999999 58888999998 999999999987 67765522223
Q ss_pred CCccEEEccCCccccccchhh--hh--hhhhhcccCCCcccccccCCCC--CCCcceEEEEEE---eccchhhhh-----
Q 015663 137 PSLRIIDLSHNEFTGVLLTGY--LD--NFKAMMHGNNISVEVDYMTPLN--SSNYYESIILTI---KGIDIKMER----- 202 (403)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~--~~--~l~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~----- 202 (403)
++|+.|++++|.+++..+.-. .. .+..|+.+.........++... ....+..+.++. ..++...+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 458888888888877544211 11 1113333332221111111000 001112222211 122222222
Q ss_pred --hcccceEEEcccCcccccCCcccC--CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccC------CcCCCCCCcc
Q 015663 203 --ILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS------NMLVGHIPTQ 272 (403)
Q Consensus 203 --~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~------n~l~~~~p~~ 272 (403)
.+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 1237888888888888 6777776 78888888888888875 677778888888888865 6677778888
Q ss_pred ccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 273 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~ 312 (403)
+..+++|+.|+|++|++ +.+|.... ..+..+.+.+|+.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l 839 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPN 839 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTT
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCC
Confidence 88888888888888888 57777632 4556666666654
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-30 Score=260.16 Aligned_cols=295 Identities=20% Similarity=0.170 Sum_probs=194.2
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
.+++++.+++++|.++.+++ ..+++|+.|+|++| ++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45677888888888877766 34566666666655 456777777777776666666777777777
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 148 (403)
++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCc
Confidence 77777777444444566777777777777777666666677777777777777665431 2455666666666666
Q ss_pred cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc-hhhhhhcccceEEEcccCcccccCCcccCC
Q 015663 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGK 227 (403)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 227 (403)
+++.... .++..| .........+.... ...+..+.+..+.+. ......+++|+.|++++|.+++..|..++.
T Consensus 204 l~~l~~~---~~L~~L---~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 204 LSTLAIP---IAVEEL---DASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CSEEECC---TTCSEE---ECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cccccCC---chhhee---eccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 6543211 112221 11111111110000 011222222222211 233455889999999999999988999999
Q ss_pred CCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcC
Q 015663 228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSY 307 (403)
Q Consensus 228 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~ 307 (403)
+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. |. ..+..+..+.+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~~L~~L~l 352 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KL-STHHTLKNLTL 352 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CC-CTTCCCSEEEC
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-Ch-hhcCCCCEEEe
Confidence 9999999999999984 6777788999999999999998 6777788899999999999999854 42 24556666777
Q ss_pred CCCCCCCC
Q 015663 308 VGNSGLCG 315 (403)
Q Consensus 308 ~gn~~lc~ 315 (403)
.+|++-|.
T Consensus 353 ~~N~~~~~ 360 (597)
T 3oja_B 353 SHNDWDCN 360 (597)
T ss_dssp CSSCEEHH
T ss_pred eCCCCCCh
Confidence 77776663
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.3e-31 Score=266.09 Aligned_cols=299 Identities=18% Similarity=0.198 Sum_probs=204.4
Q ss_pred CCCCccEEECCCCCCCCc-----------------CC---C--CCCCCCeEeCCCC-------------CCCCEEECcCC
Q 015663 5 GIATLYYLDLSNNFLTNI-----------------EY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMN 49 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~-----------------~~---~--~~~~L~~L~l~~n-------------~~L~~L~Ls~n 49 (403)
++++|++|+|++|.+++. +| . .+++|+.|++++| ++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 578999999999999993 44 4 6778888888777 57888888888
Q ss_pred c-Ccc-cCCccccCC------CCcCEEEccCCcCcCCCCc--cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663 50 N-FNG-KIPRKFVKS------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 50 ~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
. +++ .+|..++.+ ++|++|++++|+++ .+|. .|+++++|++|++++|.+++.+| .+..+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 7 777 777777765 78888888888888 7777 78888888888888888876677 77777888888888
Q ss_pred cccccCcCCCCCCccCCCC-ccEEEccCCccccccchhhh-hhhhhhcccCCCcccccccCC--CC-------CCCcceE
Q 015663 120 SNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYL-DNFKAMMHGNNISVEVDYMTP--LN-------SSNYYES 188 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~-~~l~~L~~~~~~~~~~~~~~~--~~-------~~~~~~~ 188 (403)
+|+++ .+|..+ ..+++ |++|++++|.++. .|..+. ..++.|+.+...........+ .. ....+..
T Consensus 362 ~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 362 YNQIT-EIPANF--CGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp SSEEE-ECCTTS--EEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCccc-cccHhh--hhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 88876 566655 77777 8888888888873 333211 112244444332222211100 00 1112222
Q ss_pred EEEEE---eccchhhhhhcccceEEEcccCcccccCCccc-CCC-------CCCCEEEecCCCCCCCcCcccc--CCCCC
Q 015663 189 IILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKL-------NLLKGLNISHNNLTGDIPSSLR--NLTEV 255 (403)
Q Consensus 189 ~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L 255 (403)
+.... ..++...+..+++|+.|++++|.++ .+|... ... ++|+.|+|++|+++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 32222 2344445555788888888888888 555433 222 27888888888888 6777776 88888
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEEeC------cCCcCccCCCCCC-CCCCCCCCcCCCCCC
Q 015663 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNL------SYNQFEGPIPRGS-QFNTFPNDSYVGNSG 312 (403)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~ip~~~-~~~~~~~~~~~gn~~ 312 (403)
+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|... .+..+..+.+.+|..
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 888888888886 7888888888888888 4567777777653 344555666666643
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.4e-30 Score=257.17 Aligned_cols=271 Identities=20% Similarity=0.196 Sum_probs=230.2
Q ss_pred CCCCccEEECCCCCCCCcCC--CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCc-cccCCCCcCEE
Q 015663 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 68 (403)
++++|++|++++|.++.+++ ..+++|+.|++++| ++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 57899999999999997765 67889999999998 7999999999999877765 48999999999
Q ss_pred EccCCcCcCCC--CccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccC
Q 015663 69 NLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (403)
Q Consensus 69 ~L~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 146 (403)
++++|++++.. +..+.++++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.. .+..+++|+.|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCC
Confidence 99999999655 778999999999999999999988999999999999999999998766554 237899999999999
Q ss_pred CccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015663 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (403)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 226 (403)
|.+++..+.. +..++.|+.+........... ......+..+++|+.|++++|.+++..|..+.
T Consensus 435 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 435 SLLDISSEQL-FDGLPALQHLNLQGNHFPKGN----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CCCBTTCTTT-TTTCTTCCEEECTTCBCGGGE----------------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred CccCCcCHHH-HhCCCCCCEEECCCCCCCccc----------------cccchhhccCCCccEEECCCCccCccChhhhc
Confidence 9998776654 555666666554222211000 00112345589999999999999999999999
Q ss_pred CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
.+++|++|+|++|++++..|..+.++++| .|++++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999999 99999999998889989999999999999999997655
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.6e-29 Score=234.06 Aligned_cols=246 Identities=20% Similarity=0.187 Sum_probs=176.4
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
+++.++++++.++.++....++ +++|++++|.+++..|..|.++++|++|++++|++++..|..|.+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~-----------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPD-----------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTT-----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCccccCCCCCCC-----------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 5788888888887665433333 46677777777766666777777777777777777766677777777
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc--ccchhhhhhhhhhc
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG--VLLTGYLDNFKAMM 165 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~ 165 (403)
+|++|++++|.++. +|..+. ++|++|++++|++.+..+..+ ..+++|++|++++|.++. ..+.. +..+ .|+
T Consensus 103 ~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~ 175 (332)
T 2ft3_A 103 KLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLN 175 (332)
T ss_dssp TCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCS
T ss_pred CCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCccccCCCCccc-ccCC-ccC
Confidence 77777777777775 444433 677777777777755443333 667777777777777753 22222 2222 333
Q ss_pred ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 245 (403)
.+......... ++.. ..++|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 176 ~L~l~~n~l~~-------------------l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 176 YLRISEAKLTG-------------------IPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCBCCSSBCSS-------------------CCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred EEECcCCCCCc-------------------cCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 33221111111 1111 1367999999999999888889999999999999999999877
Q ss_pred CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 888999999999999999999 788889999999999999999985433
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=248.39 Aligned_cols=110 Identities=27% Similarity=0.345 Sum_probs=72.0
Q ss_pred hhcccceEEEcccCcccccCCc-ccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663 202 RILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 280 (403)
..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 3456666666666666653443 355666666666666666655555443 67888888888887 6677667888888
Q ss_pred EEeCcCCcCccCCCCC--CCCCCCCCCcCCCCCCCCC
Q 015663 281 VLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 281 ~L~L~~N~l~~~ip~~--~~~~~~~~~~~~gn~~lc~ 315 (403)
+|++++|+++ .+|.. ..+..+..+.+.+|+..|.
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 8888888888 56654 2334455555666665553
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.1e-30 Score=236.24 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=177.9
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
..+.++.|+|++|.++.++ ..+.++..| ++|++++|.++ .+|..++.+++|++|++++|+++ .+|..|.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp-~~l~~l~~L--------~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFP-DQAFRLSHL--------QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA 147 (328)
T ss_dssp TSTTCCEEEEESSCCSSCC-SCGGGGTTC--------SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG
T ss_pred cccceeEEEccCCCchhcC-hhhhhCCCC--------CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh
Confidence 3467888888888888554 333444444 78888888888 78888888888888888888888 7788888
Q ss_pred CCCCCCEEEccCCcCCcCCChhccC---------CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEI---------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 155 (403)
++++|++|++++|.+.+.+|..+.. +++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~l~~- 223 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSALGP- 223 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCCCCG-
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCcCch-
Confidence 8888888888888777777776554 888888888888886 566554 778888888888888875432
Q ss_pred hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEE
Q 015663 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (403)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 235 (403)
. + ..+++|+.|++++|++.+.+|..++.+++|++|+
T Consensus 224 ~-l-------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 224 A-I-------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp G-G-------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred h-h-------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 1 1 1267788888888888888888888888888888
Q ss_pred ecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 236 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
|++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888877665
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.3e-29 Score=249.59 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=98.5
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (403)
...+++|+++|.+++++....++++.|++++| ++|++|++++|.+++..|+.|.++++|++|++++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34467888888888766555577888888877 67888888888888777888888888888888888
Q ss_pred cCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc--cEEEccCCcc
Q 015663 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF 149 (403)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~l 149 (403)
+++ .+|.. .+++|++|++++|.+++. .|..|+.+++|++|++++|++++. . +..+++| ++|++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--TGGGTTSCEEEEEEEESSC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c--hhhhhhceeeEEEeecccc
Confidence 888 56665 788888888888888773 357788888888888888877542 1 1333444 6666666555
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.4e-30 Score=263.86 Aligned_cols=297 Identities=18% Similarity=0.210 Sum_probs=215.5
Q ss_pred CCCCccEEECCCCCCCC------------------cCC--C--CCCCCCeEeCCCC-------------CCCCEEECcCC
Q 015663 5 GIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRMN 49 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~n 49 (403)
++++|++|+|++|.+++ +++ . .+++|+.|+|++| ++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 57899999999999999 443 3 6788999999887 68899999999
Q ss_pred c-Ccc-cCCccccCCC-------CcCEEEccCCcCcCCCCc--cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 50 N-FNG-KIPRKFVKSC-------NLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 50 ~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
. +++ .+|..++.++ +|++|++++|+++ .+|. .|+++++|+.|++++|.++ .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 7 887 7887666554 8999999999988 7888 8889999999999999988 577 7888899999999
Q ss_pred ccccccCcCCCCCCccCCCC-ccEEEccCCccccccchhhhhhhh--hhcccCCCccccccc-CCCC------CCCcceE
Q 015663 119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNFK--AMMHGNNISVEVDYM-TPLN------SSNYYES 188 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~--~L~~~~~~~~~~~~~-~~~~------~~~~~~~ 188 (403)
++|+++ .+|..+ ..+++ |+.|++++|.++. +|.. +..+. .|+.+.......... +... ....+..
T Consensus 603 s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~-lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 603 DYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKY-IPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp CSSCCS-CCCTTS--CEECTTCCEEECCSSCCCS-CCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred cCCccc-cchHHH--hhccccCCEEECcCCCCCc-Cchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 999887 677665 77888 9999999998883 3432 22222 244443322221110 1000 0112233
Q ss_pred EEEEE---eccchhhhhhcccceEEEcccCcccccCCcccCCC--------CCCCEEEecCCCCCCCcCcccc--CCCCC
Q 015663 189 IILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL--------NLLKGLNISHNNLTGDIPSSLR--NLTEV 255 (403)
Q Consensus 189 ~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l--------~~L~~L~L~~n~l~~~~p~~~~--~l~~L 255 (403)
+.+.. ..++...+..+++|+.|+|++|.++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 33222 2344445556788999999999988 566544332 28999999999998 7888776 88999
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEEeCcC------CcCccCCCCCC-CCCCCCCCcCCCCCC
Q 015663 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY------NQFEGPIPRGS-QFNTFPNDSYVGNSG 312 (403)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~ip~~~-~~~~~~~~~~~gn~~ 312 (403)
+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|... .+..+..+.+.+|..
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 999999999986 788888899999999876 77788888653 345566666666643
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.5e-29 Score=242.68 Aligned_cols=203 Identities=21% Similarity=0.187 Sum_probs=132.2
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 55555555555555555555555555555555555444444555555555555555555544445555555555555553
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
+..+.++.. .+..+++|++|++++|.+++... .
T Consensus 182 ~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~----------------------------------------------~ 214 (452)
T 3zyi_A 182 KKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPN----------------------------------------------L 214 (452)
T ss_dssp TTCCEECTT-TTTTCTTCCEEECTTSCCSSCCC----------------------------------------------C
T ss_pred CCccccChh-hccCCCCCCEEECCCCccccccc----------------------------------------------c
Confidence 333333322 12455555555555555543210 1
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+..+..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 12677888888888888888888888888888888888888777888888888888888888888777777888888888
Q ss_pred EeCcCCcCcc
Q 015663 282 LNLSYNQFEG 291 (403)
Q Consensus 282 L~L~~N~l~~ 291 (403)
|++++|.+.+
T Consensus 295 L~L~~Np~~C 304 (452)
T 3zyi_A 295 LHLHHNPWNC 304 (452)
T ss_dssp EECCSSCEEC
T ss_pred EEccCCCcCC
Confidence 8888888764
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-29 Score=232.23 Aligned_cols=247 Identities=20% Similarity=0.215 Sum_probs=148.8
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC--CCccccCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP--LPPSLVNCH 87 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~ 87 (403)
+.++.+++.++.++....++ |++|++++|.++...+..|.++++|++|++++|+++.. .+..+.+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~-----------l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSS-----------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTT-----------CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CEEEcCCCCcccCCCCCCCC-----------CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 45677777777665433222 35666777777644444466777777777777776622 245566677
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
+|++|++++|.++. +|..+..+++|++|++++|++++..+ .. +..+++|++|++++|.+.+..+.. +
T Consensus 79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~-------- 146 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGI-F-------- 146 (306)
T ss_dssp CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTT--TTTCTTCCEEECTTSCCEECSTTT-T--------
T ss_pred ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchh--hhhccCCCEEECCCCcCCccchhh-c--------
Confidence 77777777777765 55556677777777777777655433 22 266677777777777766543322 1
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc-cCCcccCCCCCCCEEEecCCCCCCCc
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDI 245 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~ 245 (403)
..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..
T Consensus 147 -----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 147 -----------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp -----------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred -----------------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 114556666666666664 45666666666666666666666555
Q ss_pred CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCC-C-CCCCCCcCCCCCCCC
Q 015663 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLC 314 (403)
Q Consensus 246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~-~-~~~~~~~~~gn~~lc 314 (403)
|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|.... + ..+..+.+.+|+..|
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 66666666666666666666655555566666666666666666655554321 1 134444444444433
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.7e-30 Score=231.54 Aligned_cols=228 Identities=19% Similarity=0.136 Sum_probs=197.6
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (403)
+.++.+++.++.++....+ +|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPA-----------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCTTCCT-----------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred eEEEcCcCCcccCCcCCCC-----------CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence 5788899888877543332 34778999999998777889999999999999999998778899999999
Q ss_pred CEEEccCCc-CCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663 90 EVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (403)
Q Consensus 90 ~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~ 168 (403)
++|++++|. ++...|..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~------------ 148 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT------------ 148 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT------------
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhH------------
Confidence 999999997 888778899999999999999999987767665 88999999999999998654322
Q ss_pred CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (403)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 248 (403)
+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..
T Consensus 149 --------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 149 --------------------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp --------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred --------------------------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 122678999999999999777778999999999999999999888999
Q ss_pred ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 9999999999999999998777889999999999999999986444
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=239.98 Aligned_cols=236 Identities=21% Similarity=0.180 Sum_probs=155.5
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (403)
.+.++.++..++.++....++++.|+|++| ++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 345555555555554433334433333332 3346666666666655556666666666666666666
Q ss_pred cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (403)
Q Consensus 76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 155 (403)
+...+..|.++++|++|++++|.++...+..|..+++|++|++++|+..+.++.. .+..+++|++|++++|.++....
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccc-
Confidence 6444445666666666666666666655556666666666666664433333332 12556666666666666653210
Q ss_pred hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEE
Q 015663 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (403)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 235 (403)
...+++|+.|++++|.+++..|..|..+++|++|+
T Consensus 203 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 203 ---------------------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp ---------------------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 11267788888888888887788888888888888
Q ss_pred ecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 236 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (403)
|++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888887777788888888888888888887777778888888888888888764
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2.9e-28 Score=247.22 Aligned_cols=322 Identities=20% Similarity=0.146 Sum_probs=210.0
Q ss_pred CCCccEEECCCCCCCCcCCCCC-----CCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCE
Q 015663 6 IATLYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~-----~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 67 (403)
.++|+.|++++|.+++..+..+ ++|+.|++++| ++|++|++++|.+++..|..|.++++|++
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 3667788888888877766333 34777777776 57788888888887777777777777777
Q ss_pred EEccCCcCcC-----CCCc----cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc----------------
Q 015663 68 LNLNGNRLEG-----PLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR---------------- 122 (403)
Q Consensus 68 L~L~~n~l~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~---------------- 122 (403)
|++++|...+ .+|. .|..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 7777654432 2222 56667777777777777777666666666666666666554
Q ss_pred ------------ccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC--CCCCcceE
Q 015663 123 ------------FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL--NSSNYYES 188 (403)
Q Consensus 123 ------------l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~ 188 (403)
+++..+..+ ..+++|+.|++++|.+++..+...+.+++.|+.+.........+... .....+..
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 333333333 56667777777777776655544455555555544433222111110 00111222
Q ss_pred EEEEEe-----ccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc--------CccccCCCCC
Q 015663 189 IILTIK-----GIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI--------PSSLRNLTEV 255 (403)
Q Consensus 189 ~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--------p~~~~~l~~L 255 (403)
+..... ...+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.. +..+.++++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 221111 112234456789999999999999888888999999999999999997532 1237889999
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC--CCCCCCCCcCCCCC-------------------CCC
Q 015663 256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNS-------------------GLC 314 (403)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~~~~~~~~~gn~-------------------~lc 314 (403)
+.|++++|+++...+..|.++++|+.|++++|++++ +|... .+..+..+.+.+|. .+.
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 999999999996555679999999999999999994 55442 33445544454442 245
Q ss_pred CCCCCCCCCC-CCCCCC
Q 015663 315 GFPLLESCNI-DEAPEP 330 (403)
Q Consensus 315 ~~~~~~~C~~-~~~~~~ 330 (403)
++|+.|+|.. .+...+
T Consensus 618 ~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 618 FNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TCCCCBCCCCCSSEECC
T ss_pred CCCcccCCccHHHHHHH
Confidence 7899999985 555444
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=246.45 Aligned_cols=292 Identities=19% Similarity=0.159 Sum_probs=173.1
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (403)
++||+++|.++.++....++|+.|++++| ++|++|++++|.+++..|+.|+++++|++|++++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 35666666666554433356666666665 56677777777777666667777777777777777776
Q ss_pred CCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc--cEEEccCCcc--cc
Q 015663 77 GPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF--TG 151 (403)
Q Consensus 77 ~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~ 151 (403)
.+|.. .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++. .+..+++| ++|++++|.+ .+
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccccccc
Confidence 45544 66777777777777765 3456667777777777777666431 12444555 6666666655 33
Q ss_pred ccchhhh-------------------------hhhhhhcccCCC------------------------------------
Q 015663 152 VLLTGYL-------------------------DNFKAMMHGNNI------------------------------------ 170 (403)
Q Consensus 152 ~~~~~~~-------------------------~~l~~L~~~~~~------------------------------------ 170 (403)
..+..+. .+++.|+.++..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 2222110 011111111100
Q ss_pred ---------------------ccccc-ccCC-C-----CCCCcceEEEEEEecc--------------------------
Q 015663 171 ---------------------SVEVD-YMTP-L-----NSSNYYESIILTIKGI-------------------------- 196 (403)
Q Consensus 171 ---------------------~~~~~-~~~~-~-----~~~~~~~~~~~~~~~~-------------------------- 196 (403)
..... .++. . .....+.........+
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 00000 0000 0 0011111111111111
Q ss_pred chhh-hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCCc-c
Q 015663 197 DIKM-ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIPT-Q 272 (403)
Q Consensus 197 ~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~ 272 (403)
.... +..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|. .
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 1111 1456788888888888888788888888888889988888885 4556788888888888888888875554 4
Q ss_pred ccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCC
Q 015663 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGN 310 (403)
Q Consensus 273 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn 310 (403)
+..+++|+.|++++|++++.+|.... ..+..+.+.+|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N 431 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSN 431 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSS
T ss_pred hccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCC
Confidence 77788888888888888877665432 34555555555
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.2e-28 Score=229.58 Aligned_cols=290 Identities=21% Similarity=0.257 Sum_probs=188.1
Q ss_pred CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (403)
.+++|++|+++++.+..... ..+++|+.|++++| ++|++|++++|.++. +| .|..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcC
Confidence 45788889999888887754 56778888888877 678888888888874 33 578888888888888
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
|.++ .++. +.++++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 120 n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 120 DNIS-DISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp SCCC-CCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCC
T ss_pred Cccc-Cchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccc
Confidence 8888 3444 778888888888888655533 347788888888888887754433 36778888888888887765
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (403)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 231 (403)
.+ +..++.|+.+..................+..+....+.+.. .....+++|+.|++++|.+++ + ..+..+++|
T Consensus 193 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 193 SP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 44 44444554444322222211111111122222222211111 113446777777777777764 2 346677777
Q ss_pred CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCC
Q 015663 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 311 (403)
Q Consensus 232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~ 311 (403)
++|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|+
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 7777777777643 346677777777777777776667777777777777777777775544 3344455555555553
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=237.39 Aligned_cols=231 Identities=19% Similarity=0.180 Sum_probs=182.2
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56788888888888777777888888888888888888666677888888888888888888766667778888888888
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
++|++.+..+..+ ..+++|++|++++|...+..+..
T Consensus 144 ~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~------------------------------------------ 179 (440)
T 3zyj_A 144 RNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEG------------------------------------------ 179 (440)
T ss_dssp CSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTT------------------------------------------
T ss_pred CCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcc------------------------------------------
Confidence 8888765544444 67788888888775433222221
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
.+..+++|+.|++++|+++ .+|. +..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++
T Consensus 180 -~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 180 -AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp -TTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred -hhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 1233788999999999999 5664 789999999999999999888999999999999999999999989999999999
Q ss_pred CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCC
Q 015663 279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGF 316 (403)
Q Consensus 279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~ 316 (403)
|+.|+|++|++++..+.. ..+..+..+.+.+||+.|.+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 999999999999544433 23456667778888887754
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=237.82 Aligned_cols=251 Identities=18% Similarity=0.129 Sum_probs=203.4
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
...++.++..++.++.... +++++|+|++|.+++..|+.|.++++|++|+|++|++++..+..|.++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-----------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-----------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCCcCccCCCCC-----------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 3456666666665543222 34588899999999888899999999999999999999888888999999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~ 168 (403)
|++|++++|.++...+..|..+++|++|++++|++++..+..+ ..+++|++|++++|...+..+..
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~------------ 190 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEG------------ 190 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTT------------
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChh------------
Confidence 9999999999998777788999999999999999876555544 88999999999985433332222
Q ss_pred CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (403)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 248 (403)
.+..+++|+.|++++|++++ +| .+..+++|++|+|++|.+++..|..
T Consensus 191 -------------------------------~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 191 -------------------------------AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp -------------------------------TTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred -------------------------------hccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccc
Confidence 12237889999999999994 45 4789999999999999999888999
Q ss_pred ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCCC
Q 015663 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~~ 317 (403)
|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+||+.|.+.
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999888999999999999999999999544433 235566677788888877543
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.1e-29 Score=230.69 Aligned_cols=209 Identities=16% Similarity=0.222 Sum_probs=188.7
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
..++.|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 46699999999998 88889999999999999999999 89999999999999999999999 47999999999999999
Q ss_pred ccccccCcCCCCCC-------ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEE
Q 015663 119 RSNRFWGPIGENTT-------IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191 (403)
Q Consensus 119 ~~n~l~~~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (403)
++|++.+.+|..+. +..+++|++|++++|.++ ..|.. +
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l--------------------------------- 202 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-I--------------------------------- 202 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-G---------------------------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-h---------------------------------
Confidence 99999888888651 234899999999999998 33332 1
Q ss_pred EEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc
Q 015663 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT 271 (403)
Q Consensus 192 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 271 (403)
..+++|+.|++++|.+++ +|..+..+++|++|++++|++.+.+|..++.+++|+.|++++|.+.+.+|.
T Consensus 203 ----------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 203 ----------ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ----------GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred ----------cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 126789999999999994 666799999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEeCcCCcCccCCCCC
Q 015663 272 QLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 272 ~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
.+..+++|++|++++|++.+.+|..
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHH
Confidence 9999999999999999999999976
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=247.36 Aligned_cols=122 Identities=22% Similarity=0.197 Sum_probs=86.3
Q ss_pred CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 70 (403)
+++++||+++|.++++.+ ..+++|+.|++++| ++|++|++++|.+++..|+.|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 357888888888887765 45666777777776 57777777777777666677777777777777
Q ss_pred cCCcCcCCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEEEcccccccCcCC
Q 015663 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIG 128 (403)
Q Consensus 71 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~ 128 (403)
++|++++..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|++++..+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 7777774444457777777777777777765 356777777777777777776654433
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-28 Score=233.04 Aligned_cols=281 Identities=19% Similarity=0.213 Sum_probs=205.1
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
++++|++|++++|.++++++ ..+++|+.|++++| ++|++|++++|.++...+..|.++++|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 47899999999999998876 67889999999988 689999999999995555567899999999
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcC-CCCC-------------Ccc
Q 015663 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI-GENT-------------TIV 134 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~-------------~~~ 134 (403)
++++|++++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++.. +..+ ...
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 99999999877888999999999999999998743 445666777777666653311 0000 001
Q ss_pred CCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc
Q 015663 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214 (403)
Q Consensus 135 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 214 (403)
..++|+.|++++|.+++. ..+..++.|+.++.... .+....+..+..+++|+.|++++
T Consensus 224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-------------------ELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-------------------CCCEEESGGGTTCSSCCEEECCS
T ss_pred ccccccEEECCCCCCccc---HHHcCCCCccEEECCCC-------------------cCCCcChhHccccccCCEEECCC
Confidence 124555666666655543 12333333333332111 11222334455689999999999
Q ss_pred CcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 215 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++++.-.
T Consensus 282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence 99995 5667788999999999999998 6777788999999999999999854 3 6788999999999999986322
Q ss_pred CCCCCCCCCCCcCCCCCCCCCC
Q 015663 295 RGSQFNTFPNDSYVGNSGLCGF 316 (403)
Q Consensus 295 ~~~~~~~~~~~~~~gn~~lc~~ 316 (403)
. ..+..+....+.+++..|+.
T Consensus 357 ~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 357 R-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp H-HHTTTCCTTTBCCCCSCCCT
T ss_pred H-HHHHHHHhhcccccCceecc
Confidence 1 12334444455666666653
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.8e-29 Score=226.85 Aligned_cols=231 Identities=21% Similarity=0.212 Sum_probs=202.5
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcc--cCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
++|++|++++|.++.+++..+.++..| ++|++++|.++. ..|..+..+++|++|++++|.++ .+|..+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQL--------TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTC--------SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccC--------CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence 589999999999998776666777665 999999999983 34677888999999999999999 6788899
Q ss_pred CCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc-cchhhhhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV-LLTGYLDNFK 162 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~ 162 (403)
++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. .+..
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~------ 170 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI------ 170 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC------
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH------
Confidence 99999999999999998655 578999999999999999988777766 8899999999999998762 2221
Q ss_pred hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
+..+++|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus 171 --------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 171 --------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp --------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred --------------------------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 122678999999999999888999999999999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCccC
Q 015663 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGP 292 (403)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ 292 (403)
+..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77777899999999999999999999999999985 999999999999865
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.9e-28 Score=242.98 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=195.7
Q ss_pred CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 70 (403)
++|++|++++|.++++++ ..+++|+.|++++| ++|++||+++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 679999999999998876 67888999999988 78999999999998 66666 8999999999
Q ss_pred cCCcCcC-CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCC--cEEEcccccc--cCcCCCCCC-------------
Q 015663 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL--QVLILRSNRF--WGPIGENTT------------- 132 (403)
Q Consensus 71 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~------------- 132 (403)
++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3468899999999999999999873 34445555 9999999988 665555431
Q ss_pred -----------ccCCCCccEEEccCCc-----------------------------------------------------
Q 015663 133 -----------IVPFPSLRIIDLSHNE----------------------------------------------------- 148 (403)
Q Consensus 133 -----------~~~l~~L~~L~l~~n~----------------------------------------------------- 148 (403)
+..+++|+.+++++|.
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 0123344444444442
Q ss_pred --cccccchhhh----hhhhhhcccCCCcccccccCC-----CCCCCcceEEEEEEeccchhh-hhhcccceEEEcccCc
Q 015663 149 --FTGVLLTGYL----DNFKAMMHGNNISVEVDYMTP-----LNSSNYYESIILTIKGIDIKM-ERILTIFMTIDLSSNK 216 (403)
Q Consensus 149 --l~~~~~~~~~----~~l~~L~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~ 216 (403)
+++..|..++ .+++.|...+...... .++. ......+..+......+.... ...+++|+.|++++|.
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 2211111110 1111111000000000 0000 000000111111111111111 1457889999999999
Q ss_pred ccccCCcccCCCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCC-ccccCCCCCCEEeCcCCcCccCC
Q 015663 217 FQGGIPEVVGKLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIP-TQLTSLKYLSVLNLSYNQFEGPI 293 (403)
Q Consensus 217 l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~i 293 (403)
+++.+|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|++++.+
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 998888889999999999999999985 234678889999999999999987455 45778888999999999888777
Q ss_pred CCCCCCCCCCCCcCCCC
Q 015663 294 PRGSQFNTFPNDSYVGN 310 (403)
Q Consensus 294 p~~~~~~~~~~~~~~gn 310 (403)
|.... ..+..+.+.+|
T Consensus 445 ~~~l~-~~L~~L~L~~N 460 (562)
T 3a79_B 445 FRCLP-PKVKVLDLHNN 460 (562)
T ss_dssp GSSCC-TTCSEEECCSS
T ss_pred hhhhc-CcCCEEECCCC
Confidence 76532 34555555555
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=8.1e-29 Score=247.99 Aligned_cols=265 Identities=20% Similarity=0.078 Sum_probs=169.3
Q ss_pred CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (403)
+++|+.|++++|.+...+. ..+++|+.|++++| ++|+.|++++|...+.. .+..+++|++|++++|+
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred CCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 4556666666666554432 34445555555554 34555555555433222 44455566666666665
Q ss_pred CcCC--CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCCCccCCCCccEEEccCCcccc
Q 015663 75 LEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 75 l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
+++. .|..+.++++|++|++++|.+++ +|..+..+++|+.|++++|++.+..+ ..+ ..+++|++|++++|.+++
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEE
T ss_pred cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCc
Confidence 5533 25555556666666666665554 44555555666666666665555444 222 455566666666665555
Q ss_pred ccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663 152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (403)
Q Consensus 152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 231 (403)
..+.. +..++.|+.+......... ...+..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 439 ~~~~~-~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 439 DFDGI-FLGLTSLNTLKMAGNSFKD------------------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp CCTTT-TTTCTTCCEEECTTCEEGG------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cchhh-hcCCCCCCEEECCCCcCCC------------------cchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 44432 3333333333321111000 0011223347899999999999999999999999999
Q ss_pred CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCccCCCC
Q 015663 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGPIPR 295 (403)
Q Consensus 232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~ 295 (403)
++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+..+.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999888999999999999999999999 6777788887 599999999999976554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=245.24 Aligned_cols=282 Identities=19% Similarity=0.208 Sum_probs=211.6
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
++++|++|+|++|.++++++ ..+++|+.|+|++| ++|++|++++|.+++..+..|+++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 47899999999999999876 67888999999988 789999999999996666678999999999
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCC-------------Ccc
Q 015663 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENT-------------TIV 134 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~-------------~~~ 134 (403)
++++|.+++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++... ..+ ...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 99999999888888999999999999999998853 4456677777777766543110 000 001
Q ss_pred CCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc
Q 015663 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214 (403)
Q Consensus 135 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 214 (403)
..++|+.|++++|.+++. ..+..++.|..+..... .+....+..+..+++|+.|+|++
T Consensus 230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-------------------~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-------------------ELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-------------------CCCEEESGGGTTCSSCCEEECTT
T ss_pred cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-------------------ccCCCCHHHhcCccCCCEEECCC
Confidence 123555666666655543 12333444433333111 12222334455689999999999
Q ss_pred CcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 215 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++. + +..+++|+.|++++|++++..+
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 99995 5777788999999999999999 6888889999999999999999855 3 6778999999999999987533
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCC
Q 015663 295 RGSQFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 295 ~~~~~~~~~~~~~~gn~~lc~~~ 317 (403)
.. .+..+....+.++...|+.+
T Consensus 363 ~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 363 RA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HH-HTTTCCTTTBCCCCCCCCTT
T ss_pred HH-HHHHHhhhccccccccCCcc
Confidence 22 34455556677888888764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.6e-28 Score=221.99 Aligned_cols=247 Identities=21% Similarity=0.231 Sum_probs=200.1
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
+++++|++++|.++++++..+.++..| ++|++++|.+++..|..|+.+++|++|++++|+++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTC--------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCC--------CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence 579999999999999987777777665 99999999999888999999999999999999998 6776654
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC--cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+.. +..+++|++|++++|.++.... ....+++.|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQ-GLPPSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSCCS-SCCTTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--ccCCCCcCEEECCCCccccCCc-cccccCCEE
Confidence 789999999999998777889999999999999998854 34443 3788999999999999886433 223333332
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
..-++ . +....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus 198 ~l~~n---~-------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 198 HLDGN---K-------------------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp ECTTS---C-------------------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred ECCCC---c-------------------CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 22111 1 11222334455889999999999999888888999999999999999999 8
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCccccC------CCCCCEEeCcCCcCc
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTS------LKYLSVLNLSYNQFE 290 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~ 290 (403)
+|..+..+++|+.|++++|++++..+..|.. ...++.+++++|.+.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 8889999999999999999999877777754 378899999999986
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.3e-28 Score=225.30 Aligned_cols=270 Identities=22% Similarity=0.266 Sum_probs=205.0
Q ss_pred CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (403)
.+++|++|++++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCC
Confidence 47899999999999998876 78899999999988 789999999999985 443 88899999999999
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++.
T Consensus 142 n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 142 NHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred CCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC
Confidence 9666444 458899999999999999887433 7888999999999998865433 36778888888888888766
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (403)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 231 (403)
.+ +..++.|+.+.........+........+..+....+.+.. .....+++|+.|++++|.+++. ..+..+++|
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 54 44455555544433332222222222223333332222221 2345689999999999999854 457899999
Q ss_pred CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
++|++++|.+++..|..++.+++|+.|++++|++++..| +..+++|+.|++++|.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999998888999999999999999999997666 788999999999999986
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=232.13 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=160.3
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (403)
++.....+.+++.++.++....++|+.|++++| ++|++|++++|.+++..|..|.++++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344455666777776665544445555555544 4557777777777766666777777777777777
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEccccc-ccCcCCCCCCccCCCCccEEEccCCccc
Q 015663 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
|++++..+..|.++++|++|++++|.++...+ ..+..+++|++|++++|. +.+..+..+ ..+++|++|++++|.++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCcC
Confidence 77774333336777777777777777776333 356677777777777774 433334433 66777777777777776
Q ss_pred cccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC---C
Q 015663 151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG---K 227 (403)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~---~ 227 (403)
+..+.. +..++.|+.+..... .+..++......+++|+.|++++|.+++..+..+. .
T Consensus 188 ~~~~~~-l~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 188 SYEPKS-LKSIQNVSHLILHMK-------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EECTTT-TTTCSEEEEEEEECS-------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred ccCHHH-HhccccCCeecCCCC-------------------ccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 654433 333333333222000 01112222333466777777777777655444332 3
Q ss_pred CCCCCEEEecCCCCCC----CcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663 228 LNLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 228 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 294 (403)
...++.++++++.+++ .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 4556677777776664 355666777777777777777773333335677777777777777776544
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.8e-28 Score=223.64 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=201.2
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
+++++|++++|.++++++..+.++..| ++|++++|.+++..|..|+++++|++|++++|+++ .+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHL--------YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-- 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCC--------cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--
Confidence 689999999999999988777777666 99999999999888999999999999999999999 6776655
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC--cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+ ..+ +|++|++++|.+++... ....+ |
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~l~~-~~~~~---L 195 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTGIPK-DLPET---L 195 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSSCCS-SSCSS---C
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCccCc-cccCC---C
Confidence 899999999999998777789999999999999999853 445444 566 99999999999987433 32333 3
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
+.+...... +.......+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus 196 ~~L~l~~n~-------------------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 196 NELHLDHNK-------------------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SCCBCCSSC-------------------CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CEEECCCCc-------------------CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 333221111 11222233445789999999999999888888999999999999999999 8
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCccccCC------CCCCEEeCcCCcCc
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL------KYLSVLNLSYNQFE 290 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~L~~N~l~ 290 (403)
+|..+..+++|+.|++++|++++..+..+... ..|+.+++++|++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 88889999999999999999998777777653 67899999999987
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1e-27 Score=232.36 Aligned_cols=288 Identities=20% Similarity=0.260 Sum_probs=145.7
Q ss_pred CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (403)
+++|++|++++|.+++.++ ..+++|+.|++++| ++|++|++++|.+++. +. +..+++|++|++++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCC
Confidence 5666667777666666654 55566666666665 5666666666666643 22 566666666666666
Q ss_pred cCcCCCCc--------------------cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCc
Q 015663 74 RLEGPLPP--------------------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (403)
Q Consensus 74 ~l~~~~p~--------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 133 (403)
++++ ++. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 145 ~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~ 217 (466)
T 1o6v_A 145 TISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----L 217 (466)
T ss_dssp EECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----G
T ss_pred ccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----c
Confidence 6553 221 123333444444444444331 123344444444444444433222 1
Q ss_pred cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEc
Q 015663 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDL 212 (403)
Q Consensus 134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L 212 (403)
..+++|++|++++|.+++.. .+..++.|+.+...........+......+..+....+.+.. .....++.|+.|++
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEc
Confidence 33444444444444444321 122333333333222211111111111112222222111111 11334566666666
Q ss_pred ccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 213 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 6666664333 5566677777777777765444 56667777777777777643 3566777777777777777766
Q ss_pred CCCCCCCCCCCCCcCCCCCC
Q 015663 293 IPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 293 ip~~~~~~~~~~~~~~gn~~ 312 (403)
.| ...+..+..+.+.+|+.
T Consensus 369 ~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG-GTTCTTCCEEECCCEEE
T ss_pred ch-hhcCCCCCEEeccCCcc
Confidence 65 33445555555555543
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=222.57 Aligned_cols=237 Identities=19% Similarity=0.165 Sum_probs=200.2
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-CcCCCCcccc
Q 015663 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLV 84 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 84 (403)
.++|++|++++|.++++++..+.++..| ++|++++|.+++..|..|..+++|++|++++|+ ++...|..|.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNL--------TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCC--------CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 3589999999999999887777777665 999999999998889999999999999999997 8866688899
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-------- 172 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERA-------- 172 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTT--------
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHH--------
Confidence 99999999999999999888899999999999999999977665545 88999999999999998654322
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 173 ------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 173 ------------------------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ------------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ------------------------------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 12267899999999999999899999999999999999999977
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~ 297 (403)
.+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|+..
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 6677999999999999999998654321 111234455567788887777653
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.7e-30 Score=236.22 Aligned_cols=237 Identities=20% Similarity=0.199 Sum_probs=137.8
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------------------CCCCEEECcCCcCcccCCccc--cCCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--VKSC 63 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------------------~~L~~L~Ls~n~l~~~~p~~~--~~l~ 63 (403)
++|+.|++++|.+ .++......|+.|++++| ++|++|++++|.+++.+|..+ ..++
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 4577778888888 332211112444433333 345556666666655555544 5555
Q ss_pred CcCEEEccCCcCcCCCCccccCC-----CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcC--CCCCCccCC
Q 015663 64 NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI--GENTTIVPF 136 (403)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l 136 (403)
+|++|++++|++++. |..+.++ ++|++|++++|++++..|..+..+++|++|++++|++.+.+ +..+.+..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 666666666665543 5555444 55666666666665555555555666666666666544331 111112445
Q ss_pred CCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc
Q 015663 137 PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (403)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 216 (403)
++|++|++++|.+++... +....+..+++|+.|++++|.
T Consensus 201 ~~L~~L~L~~N~l~~~~~-----------------------------------------~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSG-----------------------------------------VCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp TTCCEEECTTSCCCCHHH-----------------------------------------HHHHHHHTTCCCSEEECTTSC
T ss_pred CCCCEEECCCCcCcchHH-----------------------------------------HHHHHHhcCCCCCEEECCCCc
Confidence 556666666655542110 001112235677778888888
Q ss_pred ccccCC-cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663 217 FQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 217 l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (403)
+++..| ..+..+++|++|+|++|+++ .+|..+. ++|+.||+++|++++. |. +..+++|++|++++|++++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 776664 34556777888888888877 6666655 6778888888887755 54 7777778888888887764
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.4e-28 Score=239.14 Aligned_cols=281 Identities=19% Similarity=0.161 Sum_probs=205.9
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 72 (403)
++.....|.+++.++.+++...++|+.|++++| ++|++|++++|.+++..|++|+++++|++|++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 445556799999999988777789999999999 7899999999999988889999999999999999
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCC-CCCccCCCCccEEEccCCccc
Q 015663 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGE-NTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~ 150 (403)
|++++..|..|+++++|++|++++|.+++. .|..+..+++|++|++++|.+.+.++. .+ ..+++|++|++++|.++
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCccc
Confidence 999977766799999999999999999873 567899999999999999986566653 44 88999999999999998
Q ss_pred cccchhhhhhh------------------------hhhcccCCCcccccccC--CCC-----------------------
Q 015663 151 GVLLTGYLDNF------------------------KAMMHGNNISVEVDYMT--PLN----------------------- 181 (403)
Q Consensus 151 ~~~~~~~~~~l------------------------~~L~~~~~~~~~~~~~~--~~~----------------------- 181 (403)
+..+.. +..+ +.|+.+........... +..
T Consensus 162 ~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 162 NYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 866544 2222 22222221111100000 000
Q ss_pred --------------------------------------CCCc-----------------------------ceEEEEEE-
Q 015663 182 --------------------------------------SSNY-----------------------------YESIILTI- 193 (403)
Q Consensus 182 --------------------------------------~~~~-----------------------------~~~~~~~~- 193 (403)
.... +..+....
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 0000 00011110
Q ss_pred --eccchhhhhhcccceEEEcccCcccccCC---cccCCCCCCCEEEecCCCCCCCcC--ccccCCCCCCEEeccCCcCC
Q 015663 194 --KGIDIKMERILTIFMTIDLSSNKFQGGIP---EVVGKLNLLKGLNISHNNLTGDIP--SSLRNLTEVESLDLSSNMLV 266 (403)
Q Consensus 194 --~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~ 266 (403)
..++...+..+++|+.|++++|.+++.+| ..++.+++|++|++++|++++..+ ..+..+++|+.|++++|+++
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 01122233457888888888888887654 346778888888888888874322 45778888888888888888
Q ss_pred CCCCccccCCCCCCEEeCcCCcCc
Q 015663 267 GHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 267 ~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
.+|..+..+++|++|++++|.++
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCS
T ss_pred -cCChhhcccccccEEECCCCCcc
Confidence 67777888888888888888876
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.9e-26 Score=222.11 Aligned_cols=248 Identities=23% Similarity=0.178 Sum_probs=182.5
Q ss_pred CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (403)
.+++|++|++++|.+++.+. ..+++|+.|++++| ++|++|++++|.+++. | ++++++|++|++++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 46899999999999998754 66788888888887 6888888888888864 3 788888888888888
Q ss_pred cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (403)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 153 (403)
++++ +| ++++++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|++|++++|.+++..
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCCCC
T ss_pred cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccceec
Confidence 8885 44 78888888888888888873 3 7788888888888886655552 367888888898888888753
Q ss_pred chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCE
Q 015663 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (403)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 233 (403)
+..++.|+.+......... .....+++|+.|++++|++++ +| +..+++|+.
T Consensus 187 ----l~~l~~L~~L~l~~N~l~~----------------------~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 187 ----VSQNKLLNRLNCDTNNITK----------------------LDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSC----------------------CCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred ----cccCCCCCEEECcCCcCCe----------------------eccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 3334444443332111111 012347889999999999986 55 778899999
Q ss_pred EEecCCCCCCCcCccccCCC-------CCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663 234 LNISHNNLTGDIPSSLRNLT-------EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 234 L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
|++++|++++..+..+.++. +|+.|++++|++.+.+| +..+++|+.|++++|...+.+|..
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence 99999999876544444443 45556666666555555 467889999999999888877753
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.9e-26 Score=231.80 Aligned_cols=285 Identities=22% Similarity=0.222 Sum_probs=201.5
Q ss_pred CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEcc
Q 015663 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 71 (403)
++++|||++|.|+++++ ..+++|+.|+|++| ++|++|+|++|.+++..++.|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68888888888888876 45677888888887 678888888888887667778888888888888
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCC--------------------
Q 015663 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGEN-------------------- 130 (403)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------- 130 (403)
+|++++..+..|+++++|++|++++|.++.. .|..+..+++|++|++++|++++..+..
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 8888866666788888888888888888653 4677777888888888777553211000
Q ss_pred --------------------------------------------------------------------------------
Q 015663 131 -------------------------------------------------------------------------------- 130 (403)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (403)
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence
Q ss_pred ------------------------------------------------------------------------CCccCCCC
Q 015663 131 ------------------------------------------------------------------------TTIVPFPS 138 (403)
Q Consensus 131 ------------------------------------------------------------------------~~~~~l~~ 138 (403)
.....+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 00012456
Q ss_pred ccEEEccCCcccccc--chh----------------------hhhhhhhhcccCCCcccccc------cCCC--------
Q 015663 139 LRIIDLSHNEFTGVL--LTG----------------------YLDNFKAMMHGNNISVEVDY------MTPL-------- 180 (403)
Q Consensus 139 L~~L~l~~n~l~~~~--~~~----------------------~~~~l~~L~~~~~~~~~~~~------~~~~-------- 180 (403)
|+.+++++|.+.... +.. .+..+..+..+......... +...
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 778888887764321 100 01122333222221110000 0000
Q ss_pred -------------CCCCcceEEEEEE----eccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC
Q 015663 181 -------------NSSNYYESIILTI----KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (403)
Q Consensus 181 -------------~~~~~~~~~~~~~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 243 (403)
........+.... ....+..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 0011122222211 12233455668999999999999999999999999999999999999998
Q ss_pred CcCccccCCCCCCEEeccCCcCCCCCCccccCC-CCCCEEeCcCCcCccC
Q 015663 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQFEGP 292 (403)
Q Consensus 244 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~ 292 (403)
..|..|.++++|++|||++|++++..|..+..+ ++|+.|++++|++++.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 888899999999999999999999999999988 6899999999999864
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.5e-27 Score=226.62 Aligned_cols=286 Identities=22% Similarity=0.221 Sum_probs=158.4
Q ss_pred CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (403)
+++++.|+++++.++..+. ..+++|+.|++++| ++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence 5689999999999988765 67889999999988 689999999999985544 889999999999999
Q ss_pred cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc---------------------ccccccCcCCCCCC
Q 015663 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL---------------------RSNRFWGPIGENTT 132 (403)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l---------------------~~n~l~~~~~~~~~ 132 (403)
++++ ++. +.++++|++|++++|.+.+. + .+..+++|+.|++ ++|.+.+. + .
T Consensus 123 ~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~ 194 (466)
T 1o6v_A 123 QITD-IDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S---V 194 (466)
T ss_dssp CCCC-CGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G---G
T ss_pred CCCC-ChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h---h
Confidence 9984 444 88999999999999988773 3 2455555555544 44443221 1 1
Q ss_pred ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEE
Q 015663 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTID 211 (403)
Q Consensus 133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~ 211 (403)
+..+++|++|++++|.+++..+ +..++.|+.+.........+........+..+....+.+.. .....+++|+.|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 2344444444444444444333 12222222222211111111111111111111111111110 0123345555555
Q ss_pred cccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663 212 LSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 212 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (403)
+++|.+++..+ +..+++|+.|++++|++++..+ ++.+++|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 55555553322 4455555555555555553322 4555556666666665554433 4555566666666666553
Q ss_pred CCCCCCCCCCCCCCcCCCCC
Q 015663 292 PIPRGSQFNTFPNDSYVGNS 311 (403)
Q Consensus 292 ~ip~~~~~~~~~~~~~~gn~ 311 (403)
. +....+..+..+.+.+|.
T Consensus 346 ~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 346 V-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp C-GGGTTCTTCCEEECCSSC
T ss_pred c-hhhccCCCCCEEeCCCCc
Confidence 2 322333344444444443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=226.11 Aligned_cols=257 Identities=17% Similarity=0.213 Sum_probs=168.1
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 58999999999999777778999999999999999999877888999999999999999999866666899999999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCc-cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (403)
++|++++ ++....+..+++|++|++++|. +.+..+.. +..++.|+.+...... +....
T Consensus 132 ~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-------------------l~~~~ 190 (353)
T 2z80_A 132 LGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-------------------LQSYE 190 (353)
T ss_dssp TTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-------------------CCEEC
T ss_pred CCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-------------------cCccC
Confidence 9999865 4441123789999999999984 55443322 3333333222210000 00111
Q ss_pred hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc---cCCCCCCEEeccCCcCCC----CCC
Q 015663 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL---RNLTEVESLDLSSNMLVG----HIP 270 (403)
Q Consensus 198 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~----~~p 270 (403)
+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+ .....++.++++++.+++ .+|
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 1122224445555555555442222222334455555555555543322221 123344455555544443 245
Q ss_pred ccccCCCCCCEEeCcCCcCccCCCCCC--CCCCCCCCcCCCCCCCCCCC
Q 015663 271 TQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 271 ~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~~~~~~~~~gn~~lc~~~ 317 (403)
..+..+++|+.|++++|+++ .+|... .+..+..+.+.+|+..|..|
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 66788999999999999999 677653 45667777888888777543
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.2e-26 Score=219.71 Aligned_cols=264 Identities=20% Similarity=0.154 Sum_probs=204.6
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (403)
.+++|++|++++|.+++++-..+++|+.|++++| ++|++|++++|.+++ +| ++.+++|++|++++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp GCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred ccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence 5789999999999999986688999999999998 799999999999996 44 8899999999999999
Q ss_pred CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
+++ ++ ++++++|++|++++|...+.+ .+..+++|++|++++|++++ +| + ..+++|+.|++++|.+++..
T Consensus 139 l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l--~~l~~L~~L~l~~N~l~~~~- 207 (457)
T 3bz5_A 139 LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--V--SQNKLLNRLNCDTNNITKLD- 207 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--C--TTCTTCCEEECCSSCCSCCC-
T ss_pred cce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--c--ccCCCCCEEECcCCcCCeec-
Confidence 996 43 889999999999999655544 47889999999999999976 34 3 78899999999999998762
Q ss_pred hhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCC-----
Q 015663 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN----- 229 (403)
Q Consensus 155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~----- 229 (403)
+..++.|+.+......... ++ ...+++|+.|++++|++++..+..+..+.
T Consensus 208 ---l~~l~~L~~L~Ls~N~l~~-------------------ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 208 ---LNQNIQLTFLDCSSNKLTE-------------------ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp ---CTTCTTCSEEECCSSCCSC-------------------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred ---cccCCCCCEEECcCCcccc-------------------cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 4445555554442221111 11 23478999999999999987655554443
Q ss_pred --CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc--------cccCCCCCCEEeCcCCcCccCCCCCCCC
Q 015663 230 --LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT--------QLTSLKYLSVLNLSYNQFEGPIPRGSQF 299 (403)
Q Consensus 230 --~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 299 (403)
+|+.|++++|.+.+.+| ++.+++|+.|++++|+..+.+|. .+..+++|+.|++++|++++ +| -...
T Consensus 263 ~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l 338 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHN 338 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTC
T ss_pred CCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccC
Confidence 45566666666666665 46789999999999987666553 25677899999999999997 44 3345
Q ss_pred CCCCCCcCCCCC
Q 015663 300 NTFPNDSYVGNS 311 (403)
Q Consensus 300 ~~~~~~~~~gn~ 311 (403)
..+..+.+.+|.
T Consensus 339 ~~L~~L~l~~N~ 350 (457)
T 3bz5_A 339 TKLKSLSCVNAH 350 (457)
T ss_dssp TTCSEEECCSSC
T ss_pred CcCcEEECCCCC
Confidence 556666666664
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.7e-26 Score=208.04 Aligned_cols=209 Identities=21% Similarity=0.177 Sum_probs=174.3
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45888999999997777789999999999999999997777789999999999999999999888889999999999999
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCcccccc-chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
+|.+.+..+..+ ..+++|++|++++|.+++.. +..
T Consensus 109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~------------------------------------------ 144 (276)
T 2z62_A 109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY------------------------------------------ 144 (276)
T ss_dssp TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG------------------------------------------
T ss_pred CCCccccCchhc--ccCCCCCEEECcCCccceecCchh------------------------------------------
Confidence 999877665554 88999999999999987642 322
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCC----EEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 274 (403)
+..+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+ ...+|+.|++++|++++..+..+.
T Consensus 145 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp --GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred --hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence 12267899999999999987777777776666 89999999985544444 445899999999999977777788
Q ss_pred CCCCCCEEeCcCCcCccCCCC
Q 015663 275 SLKYLSVLNLSYNQFEGPIPR 295 (403)
Q Consensus 275 ~l~~L~~L~L~~N~l~~~ip~ 295 (403)
.+++|+.|++++|++++..|.
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTT
T ss_pred ccccccEEEccCCcccccCCc
Confidence 999999999999999876654
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=201.31 Aligned_cols=204 Identities=21% Similarity=0.245 Sum_probs=140.1
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 355666666666 4554443 3566666666666654445666666666666666666664445556666666666666
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (403)
|++.+..+..+ ..+++|++|++++|.+++..+..
T Consensus 95 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------- 128 (270)
T 2o6q_A 95 NKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV-------------------------------------------- 128 (270)
T ss_dssp SCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT--------------------------------------------
T ss_pred CcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH--------------------------------------------
Confidence 66654444333 56667777777777666543322
Q ss_pred hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (403)
Q Consensus 201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 280 (403)
+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 11256677777777777766666678888899999999988876667788888999999999998876677788888999
Q ss_pred EEeCcCCcCccCC
Q 015663 281 VLNLSYNQFEGPI 293 (403)
Q Consensus 281 ~L~L~~N~l~~~i 293 (403)
.|++++|++.+..
T Consensus 209 ~L~l~~N~~~c~c 221 (270)
T 2o6q_A 209 MLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCBCCSS
T ss_pred EEEecCCCeeCCC
Confidence 9999999887543
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.4e-27 Score=215.62 Aligned_cols=217 Identities=22% Similarity=0.195 Sum_probs=133.5
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
++|++|+|++|.+++.++..+.++..| ++|++++|.+++..| |..+++|++|++++|++++ ++ ..
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L--------~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~ 98 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VG 98 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTC--------CEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----EC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcC--------CEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CC
Confidence 456666666666665544333333333 666666666654333 6666666666666666652 22 23
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
++|++|++++|.+++..+. .+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~-------- 165 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELA-------- 165 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGG--------
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHh--------
Confidence 5666666666666654332 24556666666666655444433 5566666666666666654333221
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 246 (403)
..+++|+.|++++|.+++. +. ...+++|++|++++|+++ .+|
T Consensus 166 -----------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~ 207 (317)
T 3o53_A 166 -----------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMG 207 (317)
T ss_dssp -----------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EEC
T ss_pred -----------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cch
Confidence 1256677788888877744 32 234777888888888877 455
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 55777788888888888777 45666777778888888888776
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.6e-25 Score=213.05 Aligned_cols=260 Identities=25% Similarity=0.312 Sum_probs=148.6
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (403)
++|++|++++|.++++ |..+++|+.|++++| ++|++|++++|.+++ +| +|+++++|++|++++|++++
T Consensus 91 ~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 5688888888888874 445678888888888 578889999988885 66 58888888999988888884
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (403)
Q Consensus 78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 157 (403)
+|..+ ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.++.. +.
T Consensus 168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~~l-p~-- 232 (454)
T 1jl5_A 168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILEEL-PE-- 232 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCSSC-CC--
T ss_pred -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCCcc-cc--
Confidence 66543 478888888888877 55 57778888888888887754 3321 23666666666666532 21
Q ss_pred hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc--cCCcc-----------
Q 015663 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG--GIPEV----------- 224 (403)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~----------- 224 (403)
+..++.|+.+.........+... ...+..+....+.+.. ++..+++|+.|++++|.+++ ..|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 33444444444322222111110 0111111111111110 11112445555555555443 11110
Q ss_pred --cCCC-CCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc--CCCC
Q 015663 225 --VGKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG--PIPR 295 (403)
Q Consensus 225 --~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~ 295 (403)
+..+ ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred CcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 1111 355566666666553 4432 355666666666665 3443 24556666666666665 4444
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-26 Score=225.48 Aligned_cols=217 Identities=22% Similarity=0.187 Sum_probs=141.1
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
++|++|+|++|.+++.+|..+.++..| ++|+|++|.+++..| |..+++|++|++++|.+++ +| ..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~ 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VG 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTC--------CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----EC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCC--------CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CC
Confidence 366777777777776655444444444 666777777665444 6667777777777777663 22 22
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+ ..+++|++|++++|.+++..+..+..
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~------- 166 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA------- 166 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG-------
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh-------
Confidence 6677777777777664432 34667777777777766555544 56677777777777776654433211
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 246 (403)
.++.|+.|+|++|.+++..+ ...+++|+.|+|++|.+++ +|
T Consensus 167 ------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~ 207 (487)
T 3oja_A 167 ------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MG 207 (487)
T ss_dssp ------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-EC
T ss_pred ------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CC
Confidence 25667777888887775522 2357777888888887774 44
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 457777778888888887774 5666777777888888877776
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.5e-25 Score=213.09 Aligned_cols=259 Identities=22% Similarity=0.282 Sum_probs=124.8
Q ss_pred CccEEECCCCCCCCcCC-CCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663 8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (403)
+|++|++++|.+++++. ..+++|+.|++++| .+|++|++++|.+++ +| .++++++|++|++++|++++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 44444444444444322 33444555555544 245555555555543 33 34555555555555555552
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (403)
Q Consensus 78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 157 (403)
+|... ++|++|++++|.++. +| .+..+++|++|++++|++++ +|. .+++|+.|++++|.+++... .
T Consensus 210 -l~~~~---~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~~-~- 275 (454)
T 1jl5_A 210 -LPDLP---LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLPE-L- 275 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCCC-C-
T ss_pred -CCCCc---CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccCc-c-
Confidence 33221 345555555555543 34 24555555555555555543 221 12455555555555554211 1
Q ss_pred hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEec
Q 015663 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (403)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 237 (403)
.. .|+.+.........+.... ..+..+....+.+.. +....++|+.|++++|++++ +|.. +++|+.|+++
T Consensus 276 ~~---~L~~L~ls~N~l~~l~~~~--~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 276 PQ---SLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CT---TCCEEECCSSCCSEESCCC--TTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cC---cCCEEECcCCccCcccCcC--CcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 11 2222222111111111100 111222221111111 11223589999999999995 6654 5899999999
Q ss_pred CCCCCCCcCccccCCCCCCEEeccCCcCCC--CCCccccCC-------------CCCCEEeCcCCcCcc--CCCCC
Q 015663 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVG--HIPTQLTSL-------------KYLSVLNLSYNQFEG--PIPRG 296 (403)
Q Consensus 238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l-------------~~L~~L~L~~N~l~~--~ip~~ 296 (403)
+|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|..
T Consensus 346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 99999 5676 47899999999999998 788888777 889999999999997 77765
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-25 Score=202.68 Aligned_cols=211 Identities=20% Similarity=0.182 Sum_probs=176.3
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
++|++|++++|.++++.+..+.++..| ++|++++|.+++..+..|.++++|++|++++|++++..+..|.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTC--------SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCC--------cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 358999999999998877666666655 999999999998788899999999999999999998888889999
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCc-CCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (403)
++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+ ..+++|++|++++|.+++..+.. +..+..
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~-- 174 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQ-- 174 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHT--
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhh--
Confidence 9999999999999997777899999999999999999763 46655 88999999999999998765543 222222
Q ss_pred ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccce-EEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
++.+. .|++++|.+++..+..+. ..+|++|++++|++++.
T Consensus 175 --------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 175 --------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSV 215 (276)
T ss_dssp --------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCC
T ss_pred --------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceeec
Confidence 22233 799999999966666554 45899999999999977
Q ss_pred cCccccCCCCCCEEeccCCcCCCCC
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGHI 269 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~~ 269 (403)
.+..+..+++|+.|++++|++.+..
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHhHhcccccccEEEccCCcccccC
Confidence 6777899999999999999998543
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=224.50 Aligned_cols=218 Identities=21% Similarity=0.168 Sum_probs=183.1
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|++|++++|.+++..|..|..+++|++|+|++|.+++..| |.++++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 356999999999998888999999999999999999996554 8999999999999999987432 389999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
++|.+++..+. .+++|+.|++++|.+++..+..+
T Consensus 107 ~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~----------------------------------------- 140 (487)
T 3oja_A 107 ANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE----------------------------------------- 140 (487)
T ss_dssp CSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCG-----------------------------------------
T ss_pred cCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhh-----------------------------------------
Confidence 99999776553 46889999999999987655331
Q ss_pred hhhhhcccceEEEcccCcccccCCcccC-CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 277 (403)
..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|++++.+| .+..++
T Consensus 141 ---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 214 (487)
T 3oja_A 141 ---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (487)
T ss_dssp ---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred ---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence 2268899999999999998888876 799999999999999855 33 3468999999999999996555 488999
Q ss_pred CCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCC
Q 015663 278 YLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGF 316 (403)
Q Consensus 278 ~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~ 316 (403)
+|+.|++++|.+++ +|.. ..+..+..+.+.+|+..|+.
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 99999999999996 5554 34566777888999988753
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.7e-24 Score=194.33 Aligned_cols=205 Identities=22% Similarity=0.201 Sum_probs=175.6
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
...+.++++++.++.++....+ +++.|++++|.+++..+..|.++++|++|++++|+++...+..|.++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPA-----------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCT-----------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCCccCCCCCC-----------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 4578999999999987543222 34788999999997777899999999999999999996656667899
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
++|++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~---------- 152 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGV---------- 152 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhH----------
Confidence 999999999999999777888999999999999999987766655 88999999999999998654322
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 246 (403)
+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 153 ----------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 153 ----------------------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp ----------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------------------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 1226889999999999998777789999999999999999997767
Q ss_pred ccccCCCCCCEEeccCCcCCCC
Q 015663 247 SSLRNLTEVESLDLSSNMLVGH 268 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~ 268 (403)
..+..+++|+.|++++|.+...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCCS
T ss_pred HHhccccCCCEEEecCCCeeCC
Confidence 7789999999999999998754
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.6e-27 Score=214.14 Aligned_cols=239 Identities=26% Similarity=0.356 Sum_probs=187.8
Q ss_pred CCCCCeEeCCCC---------CCCCEEECcCCcCc-ccCCcccc-------CCCCcCEEEccCCcCcCCCCccc--cCCC
Q 015663 27 PTNMTQLNFDSN---------LTHKVLDMRMNNFN-GKIPRKFV-------KSCNLTSLNLNGNRLEGPLPPSL--VNCH 87 (403)
Q Consensus 27 ~~~L~~L~l~~n---------~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~ 87 (403)
..+|+.|++++| ..|+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..+ .+++
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 345666666655 23778889999884 56776665 78999999999999998888876 8999
Q ss_pred CCCEEEccCCcCCcCCChhccCC-----CCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663 88 HLEVLNVGNNQINDNFPNWLEIL-----PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (403)
+|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+ ..+++|++|++++|.+.+..+. ..
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~--~~--- 193 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGL--IS--- 193 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHH--HH---
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHH--HH---
Confidence 999999999999986 8777776 899999999999987777766 8899999999999997654210 00
Q ss_pred hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc--cCC-cccCCCCCCCEEEecCC
Q 015663 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG--GIP-EVVGKLNLLKGLNISHN 239 (403)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L~~L~L~~n 239 (403)
.+ .+..+++|++|++++|.+++ .++ ..+..+++|++|++++|
T Consensus 194 ~~-----------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 194 AL-----------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp HS-----------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred HH-----------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 00 01226889999999999983 222 34467899999999999
Q ss_pred CCCCCcC-ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663 240 NLTGDIP-SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 240 ~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~ 312 (403)
++++..| ..+..+++|+.|++++|+++ .+|..+. ++|++|++++|++++. |....+..+..+.+.+|+.
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 9997765 55677899999999999999 7777766 8999999999999965 6655556666667777753
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.5e-27 Score=215.09 Aligned_cols=216 Identities=21% Similarity=0.174 Sum_probs=177.1
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|++|++++|.+++..|..|..+++|++|++++|++++..+ |..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 45889999999998888899999999999999999985443 899999999999999998732 34899999999
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
+|++++..+. .+++|++|++++|.+++..+..+
T Consensus 108 ~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~------------------------------------------ 140 (317)
T 3o53_A 108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE------------------------------------------ 140 (317)
T ss_dssp SSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCT------------------------------------------
T ss_pred CCccCCcCcc-----ccCCCCEEECCCCCCCCccchhh------------------------------------------
Confidence 9999765543 46789999999999987544321
Q ss_pred hhhhcccceEEEcccCcccccCCccc-CCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 200 MERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|++++. |..+..+++
T Consensus 141 --~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~ 215 (317)
T 3o53_A 141 --GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAG 215 (317)
T ss_dssp --GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred --hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence 226889999999999998777776 4789999999999999844 43 34589999999999999954 455889999
Q ss_pred CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCC
Q 015663 279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~ 315 (403)
|+.|++++|++++ +|.. ..+..+..+.+.+|+..|+
T Consensus 216 L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred ccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCc
Confidence 9999999999994 5654 3455677778888888764
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=206.08 Aligned_cols=206 Identities=21% Similarity=0.207 Sum_probs=152.3
Q ss_pred CCCCEEECcCCcCcccCCccc--cCCCCcCEEEccCCcCcCCCC----ccccCCCCCCEEEccCCcCCcCCChhccCCCC
Q 015663 39 LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNCHHLEVLNVGNNQINDNFPNWLEILPE 112 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 112 (403)
++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458888888888887777777 778888888888888886554 33456788888888888888777777888888
Q ss_pred CcEEEcccccccCc--CCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663 113 LQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190 (403)
Q Consensus 113 L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (403)
|++|++++|++.+. ++....+..+++|++|++++|.++......
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~---------------------------------- 216 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC---------------------------------- 216 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH----------------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH----------------------------------
Confidence 88888888876542 222222256778888888888776321110
Q ss_pred EEEeccchhhhhhcccceEEEcccCcccccCCcccCCC---CCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663 191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
...+..+++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++
T Consensus 217 -------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 217 -------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp -------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred -------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 0012236788889999999988777777666 68999999999998 6777664 789999999999985
Q ss_pred CCCccccCCCCCCEEeCcCCcCc
Q 015663 268 HIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 268 ~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
. |. +..+++|+.|++++|+++
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTS
T ss_pred C-ch-hhhCCCccEEECcCCCCC
Confidence 4 33 577888999999999886
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.4e-25 Score=199.07 Aligned_cols=201 Identities=21% Similarity=0.201 Sum_probs=167.3
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|+.|++++|.++ .++ .+..+++|++|++++|++++ + +.+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 45588888888887 333 57889999999999999985 4 47889999999999999999877777889999999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
++|++++..+..+ ..+++|++|++++|.+++..+..
T Consensus 117 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~------------------------------------------ 152 (272)
T 3rfs_A 117 VENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGV------------------------------------------ 152 (272)
T ss_dssp TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT------------------------------------------
T ss_pred CCCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHH------------------------------------------
Confidence 9999977666555 78899999999999888654422
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++
T Consensus 153 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~ 223 (272)
T 3rfs_A 153 --FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG 223 (272)
T ss_dssp --TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred --hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence 11267889999999999987777788999999999999999987777889999999999999988743 557
Q ss_pred CCEEeCcCCcCccCCCCC
Q 015663 279 LSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 279 L~~L~L~~N~l~~~ip~~ 296 (403)
|+.++++.|.++|.+|..
T Consensus 224 l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp THHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHhCCCcccCc
Confidence 888999999999999876
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.6e-24 Score=196.36 Aligned_cols=196 Identities=23% Similarity=0.258 Sum_probs=101.2
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..+ ...+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC
Confidence 44444444444 3333332 344455555555544444444455555555555555444222 134445555555555
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
+++ .+|..+ ..+++|++|++++|.+++..+..+
T Consensus 88 ~l~-~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~-------------------------------------------- 120 (290)
T 1p9a_G 88 QLQ-SLPLLG--QTLPALTVLDVSFNRLTSLPLGAL-------------------------------------------- 120 (290)
T ss_dssp CCS-SCCCCT--TTCTTCCEEECCSSCCCCCCSSTT--------------------------------------------
T ss_pred cCC-cCchhh--ccCCCCCEEECCCCcCcccCHHHH--------------------------------------------
Confidence 543 233322 445555555555555543322110
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+....+|+.
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence 11445555555555555555555566666666666666666444445566666666666666666 45555556666666
Q ss_pred EeCcCCcCc
Q 015663 282 LNLSYNQFE 290 (403)
Q Consensus 282 L~L~~N~l~ 290 (403)
+++++|++.
T Consensus 200 l~L~~Np~~ 208 (290)
T 1p9a_G 200 AFLHGNPWL 208 (290)
T ss_dssp EECCSCCBC
T ss_pred EEeCCCCcc
Confidence 666666665
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.6e-24 Score=196.30 Aligned_cols=205 Identities=25% Similarity=0.284 Sum_probs=173.7
Q ss_pred cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC
Q 015663 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137 (403)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 137 (403)
.+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..|..|..+++|++|++++|.+++..+. ..++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence 4678899999999999999 6777664 6899999999999998889999999999999999999764432 6789
Q ss_pred CccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcc
Q 015663 138 SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF 217 (403)
Q Consensus 138 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 217 (403)
+|++|++++|.++.... . +..+++|+.|++++|++
T Consensus 78 ~L~~L~Ls~N~l~~l~~-~--------------------------------------------~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL-L--------------------------------------------GQTLPALTVLDVSFNRL 112 (290)
T ss_dssp TCCEEECCSSCCSSCCC-C--------------------------------------------TTTCTTCCEEECCSSCC
T ss_pred cCCEEECCCCcCCcCch-h--------------------------------------------hccCCCCCEEECCCCcC
Confidence 99999999999874321 1 11267899999999999
Q ss_pred cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC
Q 015663 218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297 (403)
Q Consensus 218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~ 297 (403)
++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+++ .+|...
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 9888889999999999999999999777778899999999999999999777777889999999999999999 667653
Q ss_pred -CCCCCCCCcCCCCCCCCC
Q 015663 298 -QFNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 298 -~~~~~~~~~~~gn~~lc~ 315 (403)
....+....+.+||+.|.
T Consensus 192 ~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTCCCSEEECCSCCBCCS
T ss_pred cccccCCeEEeCCCCccCc
Confidence 334455666777777764
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.2e-24 Score=212.82 Aligned_cols=253 Identities=20% Similarity=0.204 Sum_probs=161.5
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC
Q 015663 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 78 (403)
+++.|++++|.++.++....++|+.|++++| ++|++|++++|.++ .+|. .+++|++|++++|+++ .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-H 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-C
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-C
Confidence 4677777777777665544567777777777 56777777777776 4554 5677777777777777 3
Q ss_pred CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhh
Q 015663 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (403)
Q Consensus 79 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 158 (403)
+|. .+++|+.|++++|.++. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++.. ...
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~l~--~~~ 180 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTSLP--MLP 180 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCC--CCC
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCCCc--ccC
Confidence 554 45677777777777776 4432 3677777777777654 222 1245555555555555432 111
Q ss_pred hhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecC
Q 015663 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (403)
Q Consensus 159 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 238 (403)
+.|+.+.........+... ...+..+....+.+. .+...+++|+.|++++|++++ +| ..+++|+.|+|++
T Consensus 181 ---~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 181 ---SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp ---TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred ---CCCcEEECCCCCCCCCCCc--cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 2222222211111111100 001111111111111 111225789999999999985 55 4568899999999
Q ss_pred CCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCC
Q 015663 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295 (403)
Q Consensus 239 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~ 295 (403)
|.++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9998 5665 5689999999999999 7788899999999999999999887665
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.2e-25 Score=196.95 Aligned_cols=208 Identities=18% Similarity=0.140 Sum_probs=175.3
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
.+++|+.|++++|.++.... +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l--------~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccceeeeeeCCCCcccccc--cccC--------CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhc
Confidence 35678888888888876532 2222 455899999999985 3 4889999999999999999977777789
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-------- 176 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGV-------- 176 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHH--------
Confidence 99999999999999999878889999999999999999987666555 78999999999999998655432
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 177 ------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 177 ------------------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp ------------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ------------------------------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 12267899999999999988888899999999999999998743
Q ss_pred cCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 277 (403)
+++|+.|++..|+++|.+|..++.+.
T Consensus 221 -------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 55789999999999999999887654
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.6e-24 Score=188.82 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=77.1
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 44556666666666655555667788888888888888866666788888888888888888877777788888888888
Q ss_pred CcCCcCccCCCCCCCCCC------CCCCcCCCCCCCCCCCCCCCCCCC
Q 015663 284 LSYNQFEGPIPRGSQFNT------FPNDSYVGNSGLCGFPLLESCNID 325 (403)
Q Consensus 284 L~~N~l~~~ip~~~~~~~------~~~~~~~gn~~lc~~~~~~~C~~~ 325 (403)
+++|++++.......+.. .......|+ .+|+.|....|..+
T Consensus 186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 888888765332211100 011112233 35666776777664
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.6e-24 Score=187.41 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=130.8
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-CcCCCCccccCCCCCCEEEccC-CcCCcCCChhccCCCCCcEEE
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLI 117 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ 117 (403)
++++|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34777788888876666677778888888888886 7755555777788888888887 778776666777788888888
Q ss_pred cccccccCcCCCCCCccCCCCcc---EEEccCC-ccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEE
Q 015663 118 LRSNRFWGPIGENTTIVPFPSLR---IIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTI 193 (403)
Q Consensus 118 l~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (403)
+++|++++ +|. + ..+++|+ +|++++| .+++..+..
T Consensus 112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~------------------------------------- 150 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPVNA------------------------------------- 150 (239)
T ss_dssp EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECTTT-------------------------------------
T ss_pred CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCccc-------------------------------------
Confidence 88887765 444 2 5566665 7777777 666443322
Q ss_pred eccchhhhhhcccce-EEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCC-CCCCEEeccCCcCCCCCC
Q 015663 194 KGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNL-TEVESLDLSSNMLVGHIP 270 (403)
Q Consensus 194 ~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p 270 (403)
+..+++|+ .|++++|.++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|
T Consensus 151 -------~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~ 221 (239)
T 2xwt_C 151 -------FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP 221 (239)
T ss_dssp -------TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred -------ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CC
Confidence 11256677 7777777777333333333 677777777774 764445666677 777777777777763 33
Q ss_pred ccccCCCCCCEEeCcCC
Q 015663 271 TQLTSLKYLSVLNLSYN 287 (403)
Q Consensus 271 ~~~~~l~~L~~L~L~~N 287 (403)
.. .+++|+.|+++++
T Consensus 222 ~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK--GLEHLKELIARNT 236 (239)
T ss_dssp CT--TCTTCSEEECTTC
T ss_pred hh--HhccCceeeccCc
Confidence 32 4566777777665
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=6.4e-23 Score=181.96 Aligned_cols=178 Identities=20% Similarity=0.188 Sum_probs=113.5
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45555555555 4444433 35566666666666555555666666666666666666555555566666666666666
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
++++..+..+ ..+++|++|++++|.+++..+.. +
T Consensus 94 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------------~ 127 (251)
T 3m19_A 94 QLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGV--------------------------------------------F 127 (251)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------------------------------------------T
T ss_pred cccccChhHh--cccCCCCEEEcCCCcCCCcChhH--------------------------------------------h
Confidence 6654444433 55666666666666665433221 1
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCC
Q 015663 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 268 (403)
..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1155677777777777766666788888888888888888877777788888888888888888765
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.1e-23 Score=183.66 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=166.6
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCc-CcccCCccccCCCCcCEEEccC-CcCcCCCCcccc
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLV 84 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~ 84 (403)
+++++|++++|.++++++..+.++..| ++|++++|. +++..+..|.++++|++|++++ |++++..+..|.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 479999999999999888777777665 999999997 8877777999999999999998 999977777899
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCc---EEEcccc-cccCcCCCCCCccCCCCcc-EEEccCCccccccchhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLD 159 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~ 159 (403)
++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+ ..+++|+ +|++++|.++...+.. +
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i~~~~-~- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYA-F- 176 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEECTTT-T-
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCcccCHhh-c-
Confidence 99999999999999998 666 88888888 9999999 8866555545 8899999 9999999988443221 1
Q ss_pred hhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc-ccccCCcccCCC-CCCCEEEec
Q 015663 160 NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNIS 237 (403)
Q Consensus 160 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L~ 237 (403)
. .++|+.|++++|. +++..+..|..+ ++|+.|+++
T Consensus 177 ------------------------------------------~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 177 ------------------------------------------N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp ------------------------------------------T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred ------------------------------------------C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 1 2578999999995 997778889999 999999999
Q ss_pred CCCCCCCcCccccCCCCCCEEeccCCc
Q 015663 238 HNNLTGDIPSSLRNLTEVESLDLSSNM 264 (403)
Q Consensus 238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 264 (403)
+|+++ .+|.. .+++|+.|+++++.
T Consensus 214 ~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 214 QTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCccc-cCChh--HhccCceeeccCcc
Confidence 99998 45544 67899999998863
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5.7e-23 Score=187.82 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=155.9
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|+.|++++|.++ .+| .+..+++|++|++++|++++ ++. +.++++|++|++++|.+++. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 34588888888887 455 68889999999999999984 555 88999999999999999873 3 6888999999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
++|++++. +. +..+++|++|++++|.+++..+ +
T Consensus 115 ~~n~l~~~-~~---l~~l~~L~~L~l~~n~l~~~~~---l---------------------------------------- 147 (308)
T 1h6u_A 115 TSTQITDV-TP---LAGLSNLQVLYLDLNQITNISP---L---------------------------------------- 147 (308)
T ss_dssp TTSCCCCC-GG---GTTCTTCCEEECCSSCCCCCGG---G----------------------------------------
T ss_pred CCCCCCCc-hh---hcCCCCCCEEECCCCccCcCcc---c----------------------------------------
Confidence 99998663 32 3788999999999998876532 1
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++
T Consensus 148 ---~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 148 ---AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp ---GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred ---cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 1267889999999999854 43 8899999999999999985443 7889999999999999986543 788999
Q ss_pred CCEEeCcCCcCcc
Q 015663 279 LSVLNLSYNQFEG 291 (403)
Q Consensus 279 L~~L~L~~N~l~~ 291 (403)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999984
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=192.78 Aligned_cols=226 Identities=21% Similarity=0.229 Sum_probs=175.6
Q ss_pred CCCEEECcCCcCcccC-Cc--cccCCCCcCEEEccCCcCcCCCCccc--cCCCCCCEEEccCCcCCcCCC----hhccCC
Q 015663 40 THKVLDMRMNNFNGKI-PR--KFVKSCNLTSLNLNGNRLEGPLPPSL--VNCHHLEVLNVGNNQINDNFP----NWLEIL 110 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l 110 (403)
.++.+++.++.++... .. .+..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 5678888888776321 11 12245679999999999999999888 899999999999999998655 345678
Q ss_pred CCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190 (403)
Q Consensus 111 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (403)
++|++|++++|++.+..+..+ ..+++|++|++++|.+.+..... .
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~------~--------------------------- 189 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLM------A--------------------------- 189 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHH------T---------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhh------H---------------------------
Confidence 999999999999987777766 88999999999999986431100 0
Q ss_pred EEEeccchhhhhhcccceEEEcccCcccccCCc----ccCCCCCCCEEEecCCCCCCCcCccccCC---CCCCEEeccCC
Q 015663 191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE----VVGKLNLLKGLNISHNNLTGDIPSSLRNL---TEVESLDLSSN 263 (403)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n 263 (403)
......+++|++|++++|+++ .++. .++.+++|++|+|++|++++..|..+..+ ++|++|++++|
T Consensus 190 -------~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 190 -------ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp -------TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred -------HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 000112678999999999997 3333 35788999999999999998878777776 69999999999
Q ss_pred cCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663 264 MLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 264 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~ 312 (403)
+++ .+|..+. ++|+.|++++|++++. |....+..+..+.+.+|+.
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 999 6777664 7999999999999963 4444556677777777754
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.5e-24 Score=201.61 Aligned_cols=241 Identities=18% Similarity=0.197 Sum_probs=141.9
Q ss_pred EECCCCCCCCcCC---CCCCCCCeEeCCCC-----------------C-CCCEEECcCCcCcccCCccccCC-----CCc
Q 015663 12 LDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CNL 65 (403)
Q Consensus 12 L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L 65 (403)
++++.|.+++.+| ....+|+.|+|++| + +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777776655 23333444444444 2 45666666666665555555443 666
Q ss_pred CEEEccCCcCcCCCCcc----ccCC-CCCCEEEccCCcCCcCCChhc----cC-CCCCcEEEcccccccCcCCCCC--Cc
Q 015663 66 TSLNLNGNRLEGPLPPS----LVNC-HHLEVLNVGNNQINDNFPNWL----EI-LPELQVLILRSNRFWGPIGENT--TI 133 (403)
Q Consensus 66 ~~L~L~~n~l~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p~~~----~~-l~~L~~L~l~~n~l~~~~~~~~--~~ 133 (403)
++|++++|++++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.....+ .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666666444443 2233 566666666666665444332 22 2466666666666543221110 01
Q ss_pred cCCC-CccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc-ccceEEE
Q 015663 134 VPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTID 211 (403)
Q Consensus 134 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 211 (403)
..++ +|++|++++|.+++..+..+... .... ++|+.|+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~~~~~L~~L~ 202 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LASIPASVTSLD 202 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHTSCTTCCEEE
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHhCCCCCCEEE
Confidence 2233 66666666666655443322111 1113 4788999
Q ss_pred cccCccccc----CCcccCC-CCCCCEEEecCCCCCCCcC----ccccCCCCCCEEeccCCcCCCCC-------CccccC
Q 015663 212 LSSNKFQGG----IPEVVGK-LNLLKGLNISHNNLTGDIP----SSLRNLTEVESLDLSSNMLVGHI-------PTQLTS 275 (403)
Q Consensus 212 Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~ 275 (403)
+++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 999998863 3444544 3589999999999886444 34467788999999999855432 335677
Q ss_pred CCCCCEEeCcCCcCccC
Q 015663 276 LKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 276 l~~L~~L~L~~N~l~~~ 292 (403)
+++|+.||+++|++.+.
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 88888999999988754
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.9e-25 Score=211.09 Aligned_cols=242 Identities=19% Similarity=0.203 Sum_probs=157.1
Q ss_pred CCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCC---cCcccCCccc-------cCCCCcCEEEcc
Q 015663 6 IATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMN---NFNGKIPRKF-------VKSCNLTSLNLN 71 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~ 71 (403)
+++|++|+|++|.++...+ ..+.++ ++|++|++++| .+++.+|..+ ..+++|++|+|+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--------~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASK--------KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTC--------TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhC--------CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4556666666666655422 112222 33366666664 3334445444 566777777777
Q ss_pred CCcCcC----CCCccccCCCCCCEEEccCCcCCcCCChhcc----CC---------CCCcEEEccccccc-CcCCCC-CC
Q 015663 72 GNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLE----IL---------PELQVLILRSNRFW-GPIGEN-TT 132 (403)
Q Consensus 72 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l---------~~L~~L~l~~n~l~-~~~~~~-~~ 132 (403)
+|+++. .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.++.. -.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777775 2555666777777777777777543333332 23 67777777777764 222210 01
Q ss_pred ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEc
Q 015663 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212 (403)
Q Consensus 133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 212 (403)
+..+++|++|++++|.++........ ......+++|+.|+|
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~---------------------------------------~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLL---------------------------------------LEGLAYCQELKVLDL 223 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHH---------------------------------------HTTGGGCTTCCEEEC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHH---------------------------------------HHHhhcCCCccEEEC
Confidence 24566777777777766521100000 001223788999999
Q ss_pred ccCccc----ccCCcccCCCCCCCEEEecCCCCCCC----cCcccc--CCCCCCEEeccCCcCCC----CCCccc-cCCC
Q 015663 213 SSNKFQ----GGIPEVVGKLNLLKGLNISHNNLTGD----IPSSLR--NLTEVESLDLSSNMLVG----HIPTQL-TSLK 277 (403)
Q Consensus 213 s~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~ 277 (403)
++|.++ +.+|..+..+++|++|+|++|.+++. ++..+. .+++|+.|+|++|++++ .+|..+ .+++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 999996 56788889999999999999999864 456663 48999999999999997 377776 6689
Q ss_pred CCCEEeCcCCcCccCCC
Q 015663 278 YLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 278 ~L~~L~L~~N~l~~~ip 294 (403)
+|+.|++++|++++..|
T Consensus 304 ~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTSBSCTTSH
T ss_pred CceEEEccCCcCCcchh
Confidence 99999999999986553
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=3.9e-25 Score=213.87 Aligned_cols=270 Identities=16% Similarity=0.118 Sum_probs=192.4
Q ss_pred CccEEECCCCCCCCcC----C---CCCCCCCeEeCCCC------------------CCCCEEECcCCcCccc----CCcc
Q 015663 8 TLYYLDLSNNFLTNIE----Y---FPPTNMTQLNFDSN------------------LTHKVLDMRMNNFNGK----IPRK 58 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~----~---~~~~~L~~L~l~~n------------------~~L~~L~Ls~n~l~~~----~p~~ 58 (403)
+|++|+|++|.++... + ..+++|+.|++++| ++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 7999999999999532 3 67889999999999 3699999999999864 3666
Q ss_pred ccCCCCcCEEEccCCcCcCCCCcccc-----CCCCCCEEEccCCcCCcC----CChhccCCCCCcEEEcccccccCcCCC
Q 015663 59 FVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGE 129 (403)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~ 129 (403)
+..+++|++|++++|.++...+..+. .+++|++|++++|.++.. ++..+..+++|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77889999999999998854444443 367999999999999874 467778899999999999988553211
Q ss_pred CC---CccCCCCccEEEccCCccccccchhh---hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhh
Q 015663 130 NT---TIVPFPSLRIIDLSHNEFTGVLLTGY---LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203 (403)
Q Consensus 130 ~~---~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (403)
.+ .+..+++|++|++++|.+++.....+ +..++.|+.++.......... ...+.......
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--------------~~~l~~~l~~~ 311 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--------------ARLLCETLLEP 311 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--------------HHHHHHHHTST
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--------------HHHHHHHhccC
Confidence 00 01357899999999999986532222 333444444433111100000 00000011111
Q ss_pred cccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccccC-----CCCCCEEeccCCcCCC----CCC
Q 015663 204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLRN-----LTEVESLDLSSNMLVG----HIP 270 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~----~~p 270 (403)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 35888999999988865 4556667788999999999887554444432 6789999999998885 567
Q ss_pred ccccCCCCCCEEeCcCCcCcc
Q 015663 271 TQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 271 ~~~~~l~~L~~L~L~~N~l~~ 291 (403)
..+..+++|++|++++|++++
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhCCCccEEECCCCCCCH
Confidence 778888889999999998864
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.5e-22 Score=184.97 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=161.0
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
++++|++|++++|.++... .+..+ ++|++|++++|.+++. +. +..+++|++|++++|++++ ++ .+.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l--------~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~ 104 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYL--------NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIA 104 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGC--------TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGT
T ss_pred HcCCcCEEEeeCCCccCch--hhhcc--------CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhc
Confidence 3578999999999888753 23333 4559999999999854 44 9999999999999999994 44 689
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l------ 169 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L------ 169 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G------
T ss_pred CCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh---h------
Confidence 999999999999999984 43 8999999999999999976543 4889999999999999886432 1
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
..+++|+.|++++|.+++..+ +..+++|++|++++|++++.
T Consensus 170 -------------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 170 -------------------------------------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred -------------------------------------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 126789999999999985443 78999999999999999954
Q ss_pred cCccccCCCCCCEEeccCCcCCCC
Q 015663 245 IPSSLRNLTEVESLDLSSNMLVGH 268 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~~ 268 (403)
. .+..+++|+.|++++|++++.
T Consensus 211 ~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 211 S--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GGTTCTTCCEEEEEEEEEECC
T ss_pred c--cccCCCCCCEEEccCCeeecC
Confidence 4 388999999999999999853
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.5e-24 Score=200.95 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=119.9
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC-CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 447777788877765554 55678888888888887754 6667778888888888888877767777777888888888
Q ss_pred ccc-cccCc-CCCCCCccCCCCccEEEccCC-ccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEec
Q 015663 119 RSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG 195 (403)
Q Consensus 119 ~~n-~l~~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (403)
++| .+++. ++..+ ..+++|++|++++| .+++......+..
T Consensus 150 ~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~----------------------------------- 192 (336)
T 2ast_B 150 SGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAH----------------------------------- 192 (336)
T ss_dssp TTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHH-----------------------------------
T ss_pred CCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHh-----------------------------------
Confidence 887 45432 33322 56778888888888 7764321121222
Q ss_pred cchhhhhhcc-cceEEEcccC--ccc-ccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCc-CCCCC
Q 015663 196 IDIKMERILT-IFMTIDLSSN--KFQ-GGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNM-LVGHI 269 (403)
Q Consensus 196 ~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~ 269 (403)
++ +|+.|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +....
T Consensus 193 --------l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 193 --------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp --------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred --------cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 34 4555555555 232 2334444445555555555555 443444445555555555555553 22111
Q ss_pred CccccCCCCCCEEeCcCC
Q 015663 270 PTQLTSLKYLSVLNLSYN 287 (403)
Q Consensus 270 p~~~~~l~~L~~L~L~~N 287 (403)
...+..+++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 123444555555555555
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=8.8e-25 Score=211.38 Aligned_cols=286 Identities=18% Similarity=0.113 Sum_probs=201.1
Q ss_pred CCCCccEEECCCCCCCCcCC----CCCC----CCCeEeCCCC-----------------CCCCEEECcCCcCcccCCccc
Q 015663 5 GIATLYYLDLSNNFLTNIEY----FPPT----NMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKF 59 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~----~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~ 59 (403)
.+++|++|+|++|.+++..+ ..+. +|+.|++++| ++|++|++++|.+++..+..+
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 46899999999999987433 2334 7999999998 799999999999986544443
Q ss_pred c-----CCCCcCEEEccCCcCcCC----CCccccCCCCCCEEEccCCcCCcCCChhcc-----CCCCCcEEEcccccccC
Q 015663 60 V-----KSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPNWLE-----ILPELQVLILRSNRFWG 125 (403)
Q Consensus 60 ~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~ 125 (403)
. ..++|++|++++|++++. ++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 3 356899999999999964 356677889999999999998775444443 36799999999999865
Q ss_pred c----CCCCCCccCCCCccEEEccCCccccccchhhhh----hhhhhcccCCCcccccccCCCCCCCcceEEEEEEecc-
Q 015663 126 P----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD----NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI- 196 (403)
Q Consensus 126 ~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 196 (403)
. ++..+ ..+++|++|++++|.+++.....+.. .++.|+.+...... +...
T Consensus 214 ~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-------------------l~~~~ 272 (461)
T 1z7x_W 214 DNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-------------------ITAKG 272 (461)
T ss_dssp THHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-------------------CCHHH
T ss_pred HHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-------------------CCHHH
Confidence 3 23333 57899999999999987643322211 23344433331111 0010
Q ss_pred ---chhhhhhcccceEEEcccCcccccCCcccC-----CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCc
Q 015663 197 ---DIKMERILTIFMTIDLSSNKFQGGIPEVVG-----KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNM 264 (403)
Q Consensus 197 ---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~ 264 (403)
-......+++|+.|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|+
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 012233478899999999998755443332 236899999999998854 45667778999999999999
Q ss_pred CCCCCCccccC-----CCCCCEEeCcCCcCcc----CCCCC-CCCCCCCCCcCCCCC
Q 015663 265 LVGHIPTQLTS-----LKYLSVLNLSYNQFEG----PIPRG-SQFNTFPNDSYVGNS 311 (403)
Q Consensus 265 l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~ip~~-~~~~~~~~~~~~gn~ 311 (403)
+++..+..+.. .++|++|++++|.+++ .+|.. .....+..+++.+|.
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 88665544432 6789999999999885 44543 123445555565553
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.4e-21 Score=193.90 Aligned_cols=239 Identities=21% Similarity=0.275 Sum_probs=171.5
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (403)
++|++|++++|.|+.+++ .+++|+.|+|++| ++|++|++++|.+++ +|. .+++|+.|++++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~- 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT- 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-
Confidence 679999999999997665 7889999999998 588999999999984 554 5678899999999988
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (403)
Q Consensus 78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 157 (403)
.+|.. +++|++|++++|.+++ +|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++... .
T Consensus 135 ~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~N~l~~l~~-~- 199 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP-----MLPSGLQELSVSDNQLASLPT-L- 199 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC-C-
T ss_pred cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-----ccCCCCcEEECCCCCCCCCCC-c-
Confidence 46653 4889999999998887 443 34678888888888754 33 235778888888888776432 1
Q ss_pred hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEec
Q 015663 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (403)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 237 (403)
..+++.|. ........+... ...+..+.++.+.+.. ++..+++|+.|++++|.++ .+|. .+++|+.|+|+
T Consensus 200 ~~~L~~L~---L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 200 PSELYKLW---AYNNRLTSLPAL--PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp CTTCCEEE---CCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred cchhhEEE---CcCCcccccCCC--CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 23333332 212111111111 0122233222222221 2244689999999999999 5665 57899999999
Q ss_pred CCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (403)
Q Consensus 238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 277 (403)
+|+++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999 7899999999999999999999988888776544
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=9.7e-22 Score=192.82 Aligned_cols=182 Identities=23% Similarity=0.305 Sum_probs=134.8
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+++.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56788888888875 666553 67888888888888 666 456788888888888887 565 554 78888888
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
+|++++ +|. .+++|+.|++++|.+++... .
T Consensus 129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~-~------------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTM-LPE-----LPALLEYINADNNQLTMLPE-L------------------------------------------- 158 (571)
T ss_dssp SSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC-C-------------------------------------------
T ss_pred CCcCCC-CCC-----cCccccEEeCCCCccCcCCC-c-------------------------------------------
Confidence 888866 444 36788888888888775321 1
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCC-------CEEeccCCcCCCCCCcc
Q 015663 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV-------ESLDLSSNMLVGHIPTQ 272 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~ 272 (403)
+++|+.|++++|.+++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..
T Consensus 159 ----l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 159 ----PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp ----CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred ----CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 5678888888888885 665 55 78888888888888 6666 544 66 88888888888 56777
Q ss_pred ccCCCCCCEEeCcCCcCccCCCC
Q 015663 273 LTSLKYLSVLNLSYNQFEGPIPR 295 (403)
Q Consensus 273 ~~~l~~L~~L~L~~N~l~~~ip~ 295 (403)
+..+++|+.|++++|.+++.+|.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHH
Confidence 77788888888888888876664
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=168.10 Aligned_cols=175 Identities=19% Similarity=0.188 Sum_probs=95.0
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555554 333332 235566666666655444444555566666666666555544444555555555555555
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
++++..+..+ ..+++|++
T Consensus 87 ~l~~~~~~~~--~~l~~L~~------------------------------------------------------------ 104 (208)
T 2o6s_A 87 QLQSLPNGVF--DKLTQLKE------------------------------------------------------------ 104 (208)
T ss_dssp CCCCCCTTTT--TTCTTCCE------------------------------------------------------------
T ss_pred cCCccCHhHh--cCccCCCE------------------------------------------------------------
Confidence 5543332222 33444444
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.
T Consensus 105 --------L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 169 (208)
T 2o6s_A 105 --------LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 169 (208)
T ss_dssp --------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred --------EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence 4444444443444445566666666666666665444456666666666666665542 3445666
Q ss_pred EeCcCCcCccCCCCC
Q 015663 282 LNLSYNQFEGPIPRG 296 (403)
Q Consensus 282 L~L~~N~l~~~ip~~ 296 (403)
|+++.|+++|.+|..
T Consensus 170 L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 170 LSEWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHHHCTTTBBCT
T ss_pred HHHHHHhCCceeecc
Confidence 667777777666654
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.1e-22 Score=188.29 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=164.8
Q ss_pred CCCCEEECcCCcCccc-CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC-cCCcC-CChhccCCCCCcE
Q 015663 39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQV 115 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~ 115 (403)
++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5679999999999866 8888999999999999999999888888999999999999999 67752 6677888999999
Q ss_pred EEcccc-cccCc-CCCCCCccCCC-CccEEEccCCc--cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663 116 LILRSN-RFWGP-IGENTTIVPFP-SLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190 (403)
Q Consensus 116 L~l~~n-~l~~~-~~~~~~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (403)
|++++| .+++. ++..+ ..++ +|++|++++|. ++.....
T Consensus 173 L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~----------------------------------- 215 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLS----------------------------------- 215 (336)
T ss_dssp EECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHH-----------------------------------
T ss_pred EcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHH-----------------------------------
Confidence 999999 87643 33333 6788 99999999994 4421100
Q ss_pred EEEeccchhhhhhcccceEEEcccCc-ccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCC
Q 015663 191 LTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGH 268 (403)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 268 (403)
.....+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++..
T Consensus 216 --------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 216 --------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp --------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred --------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 112237889999999999 777788889999999999999995 33222236788999999999999 5433
Q ss_pred CCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663 269 IPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 269 ~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
.-..+. ..+..|++++|++++..|..
T Consensus 287 ~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 287 TLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHH--hhCcceEEecccCccccCCc
Confidence 222222 34677779999999887765
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.5e-21 Score=176.66 Aligned_cols=235 Identities=15% Similarity=0.083 Sum_probs=148.0
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCC-ccccCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH 88 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~ 88 (403)
++++-++++++.++..-.+ +++.|+|++|+|+...+++|.++++|++|+|++|++.+.+| .+|.++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~-----------~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPR-----------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCCSCCTTCCT-----------TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCCccCcCcCC-----------CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 5677788888877543222 23677888888885555678888889999998888765554 46788887
Q ss_pred CCE-EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccC-Cccccccchhhhhhhhhhcc
Q 015663 89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 89 L~~-L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 166 (403)
++. +++++|+++...|..|..+++|++|++++|++.+..+... ....++..+++.+ +.+.......+ ..
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f-~~------ 151 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSF-VG------ 151 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSS-TT------
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccch-hh------
Confidence 765 5667788888778888888888999888888865544433 4556777788765 44543332221 10
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecC-CCCCCCc
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGDI 245 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~ 245 (403)
....++.|++++|+++. +|.......+|++|++++ |.++...
T Consensus 152 ------------------------------------~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 152 ------------------------------------LSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ------------------------------------SBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ------------------------------------cchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCC
Confidence 02346667777777763 333333455677777764 4455333
Q ss_pred CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCC
Q 015663 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304 (403)
Q Consensus 246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~ 304 (403)
++.|.++++|+.||+++|+|+...+.. +.+|+.|.+.++.--..+|....+..+..
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred HHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhh
Confidence 345677777777777777777433333 34455555544433335565444444433
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=6.9e-21 Score=177.27 Aligned_cols=223 Identities=20% Similarity=0.149 Sum_probs=172.2
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCC-ccccCCCCcCE-EEccCCcCcCCCCcccc
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~ 84 (403)
+++++|+|++|.|+.+++..|.+|..| ++|+|++|.+.+.+| .+|.+++++++ +.+++|+++...|..|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 579999999999999888888888766 999999999876665 57889998876 56778999977788999
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCC-CCccEEEccCCccccccchhhhhhhhh
Q 015663 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~ 163 (403)
++++|++|++++|.++...+..+....++..+++.++.-...++... +..+ ..++.|++++|.++.+.+..+ .
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~N~i~~i~~~~f-~---- 175 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAF-N---- 175 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCSSCCCEECTTSS-T----
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhcchhhhhhccccccccCCChhhc-c----
Confidence 99999999999999998777777778889999997643334444432 2444 468999999999986544321 1
Q ss_pred hcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc-CcccccCCcccCCCCCCCEEEecCCCCC
Q 015663 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 164 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
..+++.|++++ |.++...++.|..+++|+.|++++|+|+
T Consensus 176 ----------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 176 ----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ----------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ----------------------------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 35688899975 6666444567899999999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCC
Q 015663 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287 (403)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 287 (403)
.+|.. .+.+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus 216 -~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 -SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp -CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred -ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 45542 356777777766644446664 788999999999865
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=166.15 Aligned_cols=194 Identities=20% Similarity=0.149 Sum_probs=155.3
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (403)
+.++.+++.++.++....+ +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPA-----------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCCCCCC-----------CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 5678888888877654333 34778999999997777778999999999999999996666678999999
Q ss_pred CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (403)
Q Consensus 90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~ 169 (403)
++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+.. +
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~-~----------- 144 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGV-F----------- 144 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----------
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCHHH-h-----------
Confidence 999999999998777778999999999999999977665544 78999999999999998654422 1
Q ss_pred CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc
Q 015663 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL 249 (403)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 249 (403)
..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..+
T Consensus 145 --------------------------------~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 145 --------------------------------DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp --------------------------------TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred --------------------------------ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence 226789999999998764 45678999999999999999988
Q ss_pred cCCCCCCEEeccCCcCCCCCCc
Q 015663 250 RNLTEVESLDLSSNMLVGHIPT 271 (403)
Q Consensus 250 ~~l~~L~~L~Ls~n~l~~~~p~ 271 (403)
+.++. ++..|...+..+.
T Consensus 186 ~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 186 GSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp SSBCT----TCSBBTTTCCBGG
T ss_pred ccccC----CccccccCCCcce
Confidence 87765 5555555444443
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.6e-23 Score=191.91 Aligned_cols=212 Identities=22% Similarity=0.220 Sum_probs=134.0
Q ss_pred CCCCEEECcCCcCcccCC----ccccCCC-CcCEEEccCCcCcCCCCccccCC-----CCCCEEEccCCcCCcCCChhcc
Q 015663 39 LTHKVLDMRMNNFNGKIP----RKFVKSC-NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLE 108 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~ 108 (403)
++|++||+++|.+++..+ +.|..++ +|++|++++|++++..+..+..+ ++|++|++++|.+++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346666666666665444 5555565 66666666666665555555443 6666666666666654444332
Q ss_pred ----CC-CCCcEEEcccccccCcCCCCC--CccC-CCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC
Q 015663 109 ----IL-PELQVLILRSNRFWGPIGENT--TIVP-FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL 180 (403)
Q Consensus 109 ----~l-~~L~~L~l~~n~l~~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 180 (403)
.+ ++|++|++++|++++..+..+ .+.. .++|++|++++|.+++.....+...+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l------------------- 162 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL------------------- 162 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH-------------------
Confidence 33 566666666666644332211 0112 23666666666666543322211111
Q ss_pred CCCCcceEEEEEEeccchhhhhhc-ccceEEEcccCcccccCCcccC----CC-CCCCEEEecCCCCCCC----cCcccc
Q 015663 181 NSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVG----KL-NLLKGLNISHNNLTGD----IPSSLR 250 (403)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~L~~n~l~~~----~p~~~~ 250 (403)
... +.|+.|++++|.+++..+..+. .. ++|++|+|++|.+++. ++..+.
T Consensus 163 ---------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 163 ---------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ---------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ---------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 113 4899999999999977765443 44 5999999999999853 455555
Q ss_pred C-CCCCCEEeccCCcCCCCCC----ccccCCCCCCEEeCcCCcCc
Q 015663 251 N-LTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 251 ~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~ 290 (403)
. .++|+.|+|++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 5 4599999999999987654 34577899999999999855
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.6e-23 Score=197.86 Aligned_cols=236 Identities=17% Similarity=0.235 Sum_probs=177.9
Q ss_pred CCCCEEECcCCcCcccC----CccccCCCCcCEEEccCC---cCcCCCCccc-------cCCCCCCEEEccCCcCCc---
Q 015663 39 LTHKVLDMRMNNFNGKI----PRKFVKSCNLTSLNLNGN---RLEGPLPPSL-------VNCHHLEVLNVGNNQIND--- 101 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~l~~n~l~~--- 101 (403)
++|+.|++++|.++... +..+..+++|++|+|++| ++++.+|..+ ..+++|++|++++|.++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 55688999999988653 345778999999999986 4445556554 688999999999999987
Q ss_pred -CCChhccCCCCCcEEEcccccccCcCCCCC--CccCC---------CCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663 102 -NFPNWLEILPELQVLILRSNRFWGPIGENT--TIVPF---------PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (403)
Q Consensus 102 -~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l---------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~ 169 (403)
.+|..+..+++|++|++++|.+++..+..+ .+..+ ++|++|++++|.++......+..
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------- 181 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---------- 181 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH----------
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH----------
Confidence 467788889999999999998854332222 01223 89999999999987332221111
Q ss_pred CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc-----cCCcccCCCCCCCEEEecCCCCC--
Q 015663 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-----GIPEVVGKLNLLKGLNISHNNLT-- 242 (403)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~-- 242 (403)
....++.|+.|++++|.++. ..|..+..+++|+.|+|++|.++
T Consensus 182 ------------------------------~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 182 ------------------------------TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp ------------------------------HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred ------------------------------HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 11236789999999999983 34547889999999999999996
Q ss_pred --CCcCccccCCCCCCEEeccCCcCCCC----CCcccc--CCCCCCEEeCcCCcCcc----CCCCCC--CCCCCCCCcCC
Q 015663 243 --GDIPSSLRNLTEVESLDLSSNMLVGH----IPTQLT--SLKYLSVLNLSYNQFEG----PIPRGS--QFNTFPNDSYV 308 (403)
Q Consensus 243 --~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~ip~~~--~~~~~~~~~~~ 308 (403)
+.+|..+..+++|+.|+|++|++++. ++..+. .+++|+.|+|++|.+++ .+|... .+..+..+.+.
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 56788899999999999999999865 456663 48999999999999997 466543 24667777777
Q ss_pred CCCCCC
Q 015663 309 GNSGLC 314 (403)
Q Consensus 309 gn~~lc 314 (403)
+|+.-.
T Consensus 312 ~N~l~~ 317 (386)
T 2ca6_A 312 GNRFSE 317 (386)
T ss_dssp TSBSCT
T ss_pred CCcCCc
Confidence 776543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.5e-20 Score=184.30 Aligned_cols=188 Identities=24% Similarity=0.301 Sum_probs=155.0
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
+++.|++++|.++++++..++ +|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~-----------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPP-----------QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCT-----------TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred CccEEEeCCCCCCccCHhHcC-----------CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence 799999999999986543332 3488899999998 677 457899999999999995 777 665
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhccc
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~ 167 (403)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++... +
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~lp~--l---------- 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTFLPE--L---------- 178 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--C----------
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCCcch--h----------
Confidence 99999999999998 665 68999999999999976 554 46899999999999986321 1
Q ss_pred CCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCC-------CEEEecCCC
Q 015663 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL-------KGLNISHNN 240 (403)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~n~ 240 (403)
.++|+.|+|++|.++ .+|. +.. +| +.|+|++|+
T Consensus 179 ------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 179 ------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp ------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred ------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 257899999999999 6676 554 77 999999999
Q ss_pred CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277 (403)
Q Consensus 241 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 277 (403)
|+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99 6888888899999999999999998888876654
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.3e-19 Score=155.56 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=36.2
Q ss_pred cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 344455555555555555444555555555555555555555544455555555555555555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=6.8e-20 Score=165.98 Aligned_cols=170 Identities=24% Similarity=0.362 Sum_probs=95.0
Q ss_pred CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCcc
Q 015663 61 KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLR 140 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 140 (403)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~---l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS---LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG---GTTCTTCC
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh---hccCCCCC
Confidence 3445555555555555 232 24555555555555555555322 5555555555555555533 221 24555566
Q ss_pred EEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc
Q 015663 141 IIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220 (403)
Q Consensus 141 ~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 220 (403)
+|++++|.+++.. . + ..+++|+.|++++|.+++.
T Consensus 116 ~L~L~~n~i~~~~--~-l-------------------------------------------~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 116 SLSLEHNGISDIN--G-L-------------------------------------------VHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp EEECTTSCCCCCG--G-G-------------------------------------------GGCTTCCEEECCSSCCCCC
T ss_pred EEECCCCcCCCCh--h-h-------------------------------------------cCCCCCCEEEccCCcCCcc
Confidence 6666665555321 0 0 1145566666666666543
Q ss_pred CCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 221 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 345666677777777777664333 6666777777777777664 33 2666677777777777665
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=171.82 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=67.9
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc-CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
+.++++++.++ .+|..+.. .++.|+|++|++++..+..|. ++++|+.|++++|.|++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56677777776 45554432 467777777777755555565 677777777777777766666677777777777777
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
|++++..+..+ ..+++|++|++++|.+++.
T Consensus 98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp SCCCEECTTTT--TTCTTCCEEECCSSCCCEE
T ss_pred CcCCcCCHHHh--CCCcCCCEEECCCCcccEE
Confidence 77655444433 5566666666666666543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=156.25 Aligned_cols=91 Identities=27% Similarity=0.251 Sum_probs=67.8
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 34455555555555555566677778888888888888877777788888888888888888877788888888888888
Q ss_pred CcCCcCccCCC
Q 015663 284 LSYNQFEGPIP 294 (403)
Q Consensus 284 L~~N~l~~~ip 294 (403)
+++|.+++..+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 88888876443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.8e-19 Score=163.20 Aligned_cols=171 Identities=26% Similarity=0.357 Sum_probs=142.6
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|+.|++++|.+.. ++ .+..+++|++|++++|++++ ++. +.++++|++|++++|.+++ +| .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 455888999999874 44 48889999999999999995 444 8999999999999999987 34 4899999999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
++|++++. + .+..+++|++|++++|.+++.. . +
T Consensus 120 ~~n~i~~~-~---~l~~l~~L~~L~l~~n~l~~~~--~-l---------------------------------------- 152 (291)
T 1h6t_A 120 EHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L---------------------------------------- 152 (291)
T ss_dssp TTSCCCCC-G---GGGGCTTCCEEECCSSCCCCCG--G-G----------------------------------------
T ss_pred CCCcCCCC-h---hhcCCCCCCEEEccCCcCCcch--h-h----------------------------------------
Confidence 99998653 2 2478999999999999988641 1 1
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 269 (403)
..+++|+.|++++|.+++..| +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++...
T Consensus 153 ---~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 153 ---SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ---GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred ---ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 126789999999999996555 8899999999999999984 44 4889999999999999998543
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=7.8e-20 Score=170.86 Aligned_cols=130 Identities=23% Similarity=0.210 Sum_probs=90.2
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
+.++++++.++.++..... .++.|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~-----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS-----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT-----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCCC-----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 4677777777765432222 236667777777766666666 7777777777777777666666777777
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
|++|+|++|+++...+..|..+++|++|++++|++++..+..+ ..+++|++|++++|.+++.
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSC
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCee
Confidence 7777777777777666667777777777777777766555554 6677777777777777653
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.7e-19 Score=154.13 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=89.2
Q ss_pred CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015663 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (403)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 143 (403)
.-+.++.++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEE
Confidence 3456666666666 5555443 667777777777777666666777777777777777644333333 5566666666
Q ss_pred ccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCc
Q 015663 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223 (403)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 223 (403)
+++|.+++. .+.
T Consensus 95 Ls~N~l~~l--------------------------------------------------------------------~~~ 106 (229)
T 3e6j_A 95 LGTNQLTVL--------------------------------------------------------------------PSA 106 (229)
T ss_dssp CCSSCCCCC--------------------------------------------------------------------CTT
T ss_pred CCCCcCCcc--------------------------------------------------------------------Chh
Confidence 666655532 222
Q ss_pred ccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663 224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 224 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
.+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 2344455555555555555 4455555555555555555555544444555555566666666655543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.5e-19 Score=179.15 Aligned_cols=81 Identities=30% Similarity=0.401 Sum_probs=40.5
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. | .+..+++|+.|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEE
Confidence 34445555555555432 334455555555555555553333 45555555555555555532 2 345555555555
Q ss_pred CcCCcCc
Q 015663 284 LSYNQFE 290 (403)
Q Consensus 284 L~~N~l~ 290 (403)
|++|+++
T Consensus 204 L~~N~l~ 210 (605)
T 1m9s_A 204 LFSQECL 210 (605)
T ss_dssp CCSEEEE
T ss_pred ccCCcCc
Confidence 5555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=7.8e-19 Score=153.27 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=130.8
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
.+.++.+++.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 378999999997 6776554 7999999999999988899999999999999999999987777889999999999999
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (403)
|++++..+..+ ..+++|++|++++|.++
T Consensus 98 N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~-------------------------------------------------- 125 (229)
T 3e6j_A 98 NQLTVLPSAVF--DRLVHLKELFMCCNKLT-------------------------------------------------- 125 (229)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCC--------------------------------------------------
T ss_pred CcCCccChhHh--CcchhhCeEeccCCccc--------------------------------------------------
Confidence 99976555544 56666666666666554
Q ss_pred hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCC
Q 015663 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP 270 (403)
Q Consensus 201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 270 (403)
.+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+....+
T Consensus 126 -------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 -------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 455666788999999999999997777789999999999999999986543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.9e-19 Score=154.15 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=47.2
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 4455556666666665666677778888888888888887666778888888888888888764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=8.5e-19 Score=152.00 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=121.4
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (403)
+.+++++|.++.++......++.|++++| ++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 46777777777665544555666766666 5779999999999988888899999999999999999
Q ss_pred cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (403)
Q Consensus 76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 155 (403)
++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+ ..+++|+.|++++|.+.+..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence 97777779999999999999999999888899999999999999999988777766 8899999999999999876553
Q ss_pred h
Q 015663 156 G 156 (403)
Q Consensus 156 ~ 156 (403)
.
T Consensus 172 ~ 172 (220)
T 2v70_A 172 A 172 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=4.6e-19 Score=175.63 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=150.4
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
+..+.++.+.+.+..+ +..| +.|+.|++++|.+. .+| .+..+++|+.|+|++|++++ +++ +.++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L--------~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~ 88 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNEL--------NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKN 88 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHH--------TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTT
T ss_pred HHHHhccCCCcccccc--hhcC--------CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCC
Confidence 4444556666655543 1122 34477888888887 444 58889999999999999995 444 889999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~ 168 (403)
|+.|+|++|.+++ +| .+..+++|+.|++++|.+.+. + .+..+++|+.|+|++|.+++.. . +
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l~--~-l---------- 149 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L---------- 149 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCCG--G-G----------
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCch--h-h----------
Confidence 9999999999987 34 688999999999999998653 2 2478899999999999888641 1 1
Q ss_pred CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (403)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 248 (403)
..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ + ..
T Consensus 150 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~ 192 (605)
T 1m9s_A 150 ---------------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RA 192 (605)
T ss_dssp ---------------------------------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GG
T ss_pred ---------------------------------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hH
Confidence 126789999999999997666 8899999999999999985 4 45
Q ss_pred ccCCCCCCEEeccCCcCCCCCCcc
Q 015663 249 LRNLTEVESLDLSSNMLVGHIPTQ 272 (403)
Q Consensus 249 ~~~l~~L~~L~Ls~n~l~~~~p~~ 272 (403)
+..+++|+.|+|++|++.+.....
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCCCCC
T ss_pred HccCCCCCEEEccCCcCcCCcccc
Confidence 889999999999999998654333
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.8e-19 Score=160.60 Aligned_cols=80 Identities=26% Similarity=0.309 Sum_probs=44.0
Q ss_pred cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015663 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285 (403)
Q Consensus 206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 285 (403)
+|+.|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 34445555555443 22 35555666666666666653 22 455566666666666666544 445566666666666
Q ss_pred CCcCcc
Q 015663 286 YNQFEG 291 (403)
Q Consensus 286 ~N~l~~ 291 (403)
+|.+++
T Consensus 181 ~N~~~~ 186 (263)
T 1xeu_A 181 GQKCVN 186 (263)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 666653
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.2e-18 Score=146.83 Aligned_cols=83 Identities=22% Similarity=0.308 Sum_probs=52.9
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 282 (403)
+++|+.|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 3445555555555555555566667777777777776 54 444 46777777777777777774 33 56677777777
Q ss_pred eCcCCcCc
Q 015663 283 NLSYNQFE 290 (403)
Q Consensus 283 ~L~~N~l~ 290 (403)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 77777765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=6.7e-19 Score=156.95 Aligned_cols=167 Identities=21% Similarity=0.273 Sum_probs=132.4
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 556777888773 33 5778888999999999888 566 68888999999999999888444 888899999999999
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
++++ ++.. .. ++|++|++++|.+++... +
T Consensus 96 ~l~~-l~~~---~~-~~L~~L~L~~N~l~~~~~---l------------------------------------------- 124 (263)
T 1xeu_A 96 RLKN-LNGI---PS-ACLSRLFLDNNELRDTDS---L------------------------------------------- 124 (263)
T ss_dssp CCSC-CTTC---CC-SSCCEEECCSSCCSBSGG---G-------------------------------------------
T ss_pred ccCC-cCcc---cc-CcccEEEccCCccCCChh---h-------------------------------------------
Confidence 8865 3332 22 889999999998876411 1
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC
Q 015663 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 269 (403)
..+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 1267889999999999854 4 588899999999999999855 67889999999999999998653
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.9e-18 Score=147.23 Aligned_cols=155 Identities=23% Similarity=0.264 Sum_probs=128.5
Q ss_pred ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015663 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS 138 (403)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 138 (403)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+ ..+++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTS 113 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTT
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCC
Confidence 356788999999999999 677 68999999999999997765 3478899999999999999987777766 88999
Q ss_pred ccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc-c
Q 015663 139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-F 217 (403)
Q Consensus 139 L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l 217 (403)
|++|++++|.+++..+..+ ..+++|+.|++++|. +
T Consensus 114 L~~L~Ls~n~i~~~~~~~l--------------------------------------------~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKI--------------------------------------------NTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp CCEEECCSSBCBGGGHHHH--------------------------------------------TTCSSCCEEECCSCTBC
T ss_pred CCEEEecCCccCcHhHHHH--------------------------------------------hhCCCCCEEEccCCCCc
Confidence 9999999999986544331 126889999999998 6
Q ss_pred cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663 218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
+ .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 5 566 68899999999999999985 44 68899999999999999864
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=8.5e-20 Score=185.20 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=50.8
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
+.++.|+|.+|.+...... .++.++|+.| .+..++++.|.+. ..|+.|..+..|+.|+|++|++. .+|..+.++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA---LLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred CccceEEeeCCCCCcchhh---HhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence 4566777777777665331 1222233222 2233444444444 44555666666666666666665 555555566
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
++|++|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCC
Confidence 66666666666665 35555666666666666666664 445443 55666666666666554
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6e-21 Score=188.01 Aligned_cols=89 Identities=28% Similarity=0.340 Sum_probs=70.6
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEE
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVL 282 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L 282 (403)
+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 567788888888888 777788888888888888888874 56 6788888888888888888766 7888888888888
Q ss_pred eCcCCcCccCCCC
Q 015663 283 NLSYNQFEGPIPR 295 (403)
Q Consensus 283 ~L~~N~l~~~ip~ 295 (403)
++++|++++.+|.
T Consensus 539 ~L~~N~l~~~~~~ 551 (567)
T 1dce_A 539 NLQGNSLCQEEGI 551 (567)
T ss_dssp ECTTSGGGGSSSC
T ss_pred EecCCcCCCCccH
Confidence 8888888866553
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=7.8e-20 Score=182.23 Aligned_cols=116 Identities=14% Similarity=0.032 Sum_probs=69.0
Q ss_pred CCCCccEEECCCCCCCCcCC-------CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCcccCCcccc
Q 015663 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFV 60 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~~ 60 (403)
.+++|++|+|++|.+++... ..+++|+.|+++.| ++|+.|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 57889999999998765521 45788888888766 678889998888774 566666
Q ss_pred CCCCcCEEEccCCcCc---CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc
Q 015663 61 KSCNLTSLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 122 (403)
.+++|++|+++..... +..+..+..+++|+.|+++++... .+|..+..+++|++|++++|.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence 7777777777642211 122223344444444444443222 133334444444444444444
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=8.6e-20 Score=181.92 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=72.0
Q ss_pred ccEEECCCCC-CCCcC-C---CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCc----ccCCccccCC
Q 015663 9 LYYLDLSNNF-LTNIE-Y---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFN----GKIPRKFVKS 62 (403)
Q Consensus 9 L~~L~Ls~n~-l~~~~-~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~----~~~p~~~~~l 62 (403)
|++|+|++|. ++... + ..+++|+.|+|++| ++|+.|++++|.++ +.++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666554 11100 0 24556666666665 45666666666665 2233344456
Q ss_pred CCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCC---cCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc
Q 015663 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN---DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139 (403)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 139 (403)
++|++|++++|.+. .+|..+.++++|+.|+++..... ...+..+..+++|+.|.++++.. +.++..+ ..+++|
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~--~~~~~L 295 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF--PFAAQI 295 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG--GGGGGC
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHH--hhcCCC
Confidence 66666666666665 35555666666666666542221 12223445556666666655422 2233322 445566
Q ss_pred cEEEccCCcccc
Q 015663 140 RIIDLSHNEFTG 151 (403)
Q Consensus 140 ~~L~l~~n~l~~ 151 (403)
++|++++|.+++
T Consensus 296 ~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 296 RKLDLLYALLET 307 (592)
T ss_dssp CEEEETTCCCCH
T ss_pred cEEecCCCcCCH
Confidence 666666655443
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.2e-18 Score=146.16 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=67.7
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
+++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45566667777777666677777777777888888777766666677777888888888887777777777777888888
Q ss_pred CcCCcCccCCC
Q 015663 284 LSYNQFEGPIP 294 (403)
Q Consensus 284 L~~N~l~~~ip 294 (403)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88887776544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.7e-20 Score=181.64 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=138.8
Q ss_pred CCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-------------CcCCCCccccCCCCCCEEE-ccCCcCC
Q 015663 35 FDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-------------LEGPLPPSLVNCHHLEVLN-VGNNQIN 100 (403)
Q Consensus 35 l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~ 100 (403)
+..++.|+.|+|++|.++ .+|+.++.+++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 455577788888888886 778888888888888886664 4556667777777777777 5555332
Q ss_pred cCCCh------hccC--CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcc
Q 015663 101 DNFPN------WLEI--LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172 (403)
Q Consensus 101 ~~~p~------~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~ 172 (403)
. ++. .+.. ...|+.|++++|.+++ +|. + ..+++|+.|++++|.++. +|.. +
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~N~l~~-lp~~-~-------------- 482 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSHNRLRA-LPPA-L-------------- 482 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCSSCCCC-CCGG-G--------------
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCcccccc-cchh-h--------------
Confidence 2 110 0111 1257888888888865 554 3 778888888888888873 3332 1
Q ss_pred cccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc-CccccC
Q 015663 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI-PSSLRN 251 (403)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~ 251 (403)
..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.
T Consensus 483 -----------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 483 -----------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp -----------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred -----------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 126778888888888885 66 7888888888888888888665 888888
Q ss_pred CCCCCEEeccCCcCCCCCCcc---ccCCCCCCEEeC
Q 015663 252 LTEVESLDLSSNMLVGHIPTQ---LTSLKYLSVLNL 284 (403)
Q Consensus 252 l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L 284 (403)
+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888888888888665432 234778888764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.9e-17 Score=136.85 Aligned_cols=134 Identities=22% Similarity=0.216 Sum_probs=117.4
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCc-cccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
+.+++++|.++.++..... ++++|++++|.+++..+. .|+.+++|++|++++|++++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 6899999999877543222 348889999999866664 4899999999999999999888999999999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchh
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 156 (403)
|++|++++|++++..+..|..+++|++|++++|++++..|..+ ..+++|++|++++|.+++..+..
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcch
Confidence 9999999999999888889999999999999999998888866 88999999999999999876543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.9e-18 Score=173.99 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=103.5
Q ss_pred CCccEEECCCCCCCCcC---------CCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663 7 ATLYYLDLSNNFLTNIE---------YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~---------~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (403)
..++.++|+.|.|.+.. +..+..+. .|+.|+|++|.+. .+|..++.+++|++|+|++|+++
T Consensus 191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~--------~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~- 260 (727)
T 4b8c_D 191 ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ--------LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT- 260 (727)
T ss_dssp -------------------------------CCC--------CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-
T ss_pred hHhhcCccCcccccCccccccceecChhhhccCC--------CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-
Confidence 34567777777776643 23344444 4599999999998 78888889999999999999999
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (403)
Q Consensus 78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 157 (403)
.+|..|+++++|++|+|++|.|+. +|..|+.+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.+++.++..+
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH
Confidence 899999999999999999999995 7999999999999999999995 677765 899999999999999998777553
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=5.6e-19 Score=176.06 Aligned_cols=283 Identities=14% Similarity=0.078 Sum_probs=158.5
Q ss_pred CCCCccEEECCCCCCCCcCC-------CCCCCCCeEeCCCC----------------CCCCEEECcCCcCcccCCccccC
Q 015663 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK 61 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~ 61 (403)
.+++|++|+|++|.+++..+ ..+++|+.|++++| ++|++|++++|...+.+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 46778888888887665332 35667888888776 67888888877222235555566
Q ss_pred CCCcCEEEccCCc--------------------------Cc----CCCCccccCCCCCCEEEccCCcCCcCCC-hhccCC
Q 015663 62 SCNLTSLNLNGNR--------------------------LE----GPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEIL 110 (403)
Q Consensus 62 l~~L~~L~L~~n~--------------------------l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l 110 (403)
+++|++|+++.+. +. +.++..+..+++|++|++++|.++.... ..+..+
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 6666666644331 11 1233333467889999999888765322 235678
Q ss_pred CCCcEEEcccccccCcCCCCCCccCCCCccEEEccC---------CccccccchhhhhhhhhhcccCCCcccccc--cCC
Q 015663 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH---------NEFTGVLLTGYLDNFKAMMHGNNISVEVDY--MTP 179 (403)
Q Consensus 111 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~--~~~ 179 (403)
++|++|++++| +.......+ ...+++|++|++.+ +.+++.....+...++.|+.+......... ...
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVL-ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHH-HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHH-HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 88899988887 322111110 13467788887733 344433322323334444433111000000 000
Q ss_pred CC-CCCcceEEEEEE------eccc--------hhhhhhcccceEEEcccCcccccCCcccCC-CCCCCEEEecCCCCCC
Q 015663 180 LN-SSNYYESIILTI------KGID--------IKMERILTIFMTIDLSSNKFQGGIPEVVGK-LNLLKGLNISHNNLTG 243 (403)
Q Consensus 180 ~~-~~~~~~~~~~~~------~~~~--------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~ 243 (403)
.. ....+..+.... ..+. ......+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 00 001122222221 1111 11234467788888876 555544444444 7788888888888765
Q ss_pred CcCccc-cCCCCCCEEeccCCcCCCCCCc-cccCCCCCCEEeCcCCcCc
Q 015663 244 DIPSSL-RNLTEVESLDLSSNMLVGHIPT-QLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 244 ~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~ 290 (403)
..+..+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 444444 5678888888888887544333 3445778888888888774
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.5e-16 Score=131.30 Aligned_cols=131 Identities=20% Similarity=0.157 Sum_probs=114.2
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (403)
+.+++++|.++.++..... +|+.|++++|.++ .+|..|.++++|++|++++|++++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 6789999999987643332 3478899999998 788999999999999999999998777889999999
Q ss_pred CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
++|++++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.....
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCc
Confidence 999999999999888899999999999999999976555544 789999999999999986544
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.1e-18 Score=174.07 Aligned_cols=305 Identities=16% Similarity=0.126 Sum_probs=160.3
Q ss_pred CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC---------------CCCCEEECcCCcCcccCCcccc----C
Q 015663 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFV----K 61 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n---------------~~L~~L~Ls~n~l~~~~p~~~~----~ 61 (403)
.+++|++|+|++|.+++..+ ..+++|+.|++++| ++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46788888888888776543 25778888888876 7888888888887755444333 5
Q ss_pred CCCcCEEEccCCc--CcC-CCCccccCCCCCCEEEccCC-cCCcCCChhccCCCCCcEEEccccc---------------
Q 015663 62 SCNLTSLNLNGNR--LEG-PLPPSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNR--------------- 122 (403)
Q Consensus 62 l~~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~--------------- 122 (403)
+++|++|++++|. ++. .++..+.++++|++|++++| .+.+ +|..+..+++|+.|+++.+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6688888888876 211 11112344678888888776 2222 33333344444444432221
Q ss_pred -----------ccCcCCCCC--CccCCCCccEEEccCCccccccchh------------------------hhhhhhhhc
Q 015663 123 -----------FWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTG------------------------YLDNFKAMM 165 (403)
Q Consensus 123 -----------l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~l~~L~ 165 (403)
+.......+ .+..+++|++|++++|.+++..... ....++.|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 000000000 0012344555555555443322211 122233333
Q ss_pred ccCCCcc------cccccCC-----C-CCCCcceEEEEEEeccchh----hhhhcccceEEEcc--c----Cccccc---
Q 015663 166 HGNNISV------EVDYMTP-----L-NSSNYYESIILTIKGIDIK----MERILTIFMTIDLS--S----NKFQGG--- 220 (403)
Q Consensus 166 ~~~~~~~------~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls--~----n~l~~~--- 220 (403)
.+..... ....+.. . .....++.+......+... ....+++|+.|+++ + +.+++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 3322000 0000000 0 0011122333333333321 22246788888888 3 445521
Q ss_pred --CCcccCCCCCCCEEEecCCCCCCCcCccccC-CCCCCEEeccCCcCCCCCCccc-cCCCCCCEEeCcCCcCccCCCC-
Q 015663 221 --IPEVVGKLNLLKGLNISHNNLTGDIPSSLRN-LTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEGPIPR- 295 (403)
Q Consensus 221 --~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~ip~- 295 (403)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 122245677888888876 565444444544 7889999999998876555444 6688999999999988543221
Q ss_pred C-CCCCCCCCCcCCCCC
Q 015663 296 G-SQFNTFPNDSYVGNS 311 (403)
Q Consensus 296 ~-~~~~~~~~~~~~gn~ 311 (403)
. ..+..+..+.+.+|+
T Consensus 501 ~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCS 517 (594)
T ss_dssp TGGGGGGSSEEEEESSC
T ss_pred HHHhCCCCCEEeeeCCC
Confidence 1 123345555555553
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.1e-16 Score=147.54 Aligned_cols=207 Identities=11% Similarity=0.097 Sum_probs=134.8
Q ss_pred CCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc---CcCCCCCCccCCCC
Q 015663 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW---GPIGENTTIVPFPS 138 (403)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~l~~ 138 (403)
+++|++++|++ .++...+.+|.+|++|+.+++++|.+..+.+.+|..+.++..+....+... ..+ ....|..+.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i-~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW-EHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT-TTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc-cccccccccc
Confidence 88888888877 777556667888888888888888877777777777776666665543210 011 1112344455
Q ss_pred cc-EEEccCCccccccchhhhhh---hhhhcccCCCcccccccCCCCCCCcceEEEEEEecc-chhhhhhcccceEEEcc
Q 015663 139 LR-IIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI-DIKMERILTIFMTIDLS 213 (403)
Q Consensus 139 L~-~L~l~~n~l~~~~~~~~~~~---l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~Ls 213 (403)
|+ .+++.... ..+...+.. ...+..+.. .. . +... ...+...+++|+.++++
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~---~~-~----------------l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTI---EG-K----------------LDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEE---EE-C----------------CCHHHHHHHHHHCTTCCEEECT
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEE---ee-e----------------ecHHHHHHHHHhcCCCeEEECC
Confidence 55 34443221 111111111 111111111 00 0 0000 01122337899999999
Q ss_pred cCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCC-EEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663 214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVE-SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 214 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
+|+++...+..|.++++|+.++|.+| ++...+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++ .
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~ 311 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T 311 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c
Confidence 99999777788999999999999998 7756678899999999 999998 777677899999999999999999997 4
Q ss_pred CCCC
Q 015663 293 IPRG 296 (403)
Q Consensus 293 ip~~ 296 (403)
|+..
T Consensus 312 I~~~ 315 (329)
T 3sb4_A 312 LGDE 315 (329)
T ss_dssp ECTT
T ss_pred cchh
Confidence 5543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=8.6e-17 Score=133.22 Aligned_cols=136 Identities=21% Similarity=0.088 Sum_probs=108.6
Q ss_pred CCCCccEEECCCCCCC-CcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
..++|++|++++|.++ +.+|..+.++..| ++|++++|.+++. ..+..+++|++|++++|++++.+|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNL--------EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGC--------CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCC--------CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 3478999999999988 5555555555555 8899999998855 788889999999999999997688888
Q ss_pred cCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCC---CCCCccCCCCccEEEccCCccccc
Q 015663 84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+ ..+++|++|++++|.+...
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSCBC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChhhc
Confidence 889999999999999988422 678889999999999999865443 233 7788999999999887654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.2e-16 Score=132.41 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=21.5
Q ss_pred ccCCCCCCCEEEecCCCCCCCcC---ccccCCCCCCEEeccCCcCC
Q 015663 224 VVGKLNLLKGLNISHNNLTGDIP---SSLRNLTEVESLDLSSNMLV 266 (403)
Q Consensus 224 ~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~ 266 (403)
.+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 34445555555555555553322 24455555555555555554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=1.1e-15 Score=127.67 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=113.5
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
.+.++++++.++.++....+ +|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 46889999999887643333 3478899999999777778899999999999999999766667899999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
|++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+.+..+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999999999777788999999999999999976555444 779999999999999987654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.3e-17 Score=130.49 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=50.5
Q ss_pred CEEECcCCcCc-ccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 42 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 44445555444 34444444555555555555555432 3444455555555555555444444444455555555555
Q ss_pred ccccCc-CCCCCCccCCCCccEEEccCCccccc
Q 015663 121 NRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 121 n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
|++++. .+..+ ..+++|++|++++|.+++.
T Consensus 98 N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 98 NKIKDLSTIEPL--KKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp SCCCSHHHHGGG--GGCTTCCEEECTTCGGGGS
T ss_pred CcCCChHHHHHH--hhCCCCCEEeCcCCcccch
Confidence 554331 11222 4445555555555555443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2e-15 Score=127.80 Aligned_cols=107 Identities=25% Similarity=0.359 Sum_probs=96.2
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+++++++|.++ .+|..+. .+|++|++++|+++ .+|..|.++++|+.|++++|.|++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67999999998 6776654 58999999999999 78899999999999999999999988889999999999999999
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
++++..+..+ ..+++|++|++++|.+++..+
T Consensus 89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 RLRCIPPRTF--DGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCCBCCTTTT--TTCTTCCEEECCSSCCCBCCT
T ss_pred ccCEeCHHHh--CCCCCCCEEECCCCCCCeeCh
Confidence 9988777666 899999999999999986544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.8e-16 Score=126.54 Aligned_cols=130 Identities=22% Similarity=0.161 Sum_probs=109.1
Q ss_pred CCCCccEEECCCCCCC-CcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
..++|+.|++++|.++ +..|..+.++..| ++|++++|.+++. ..++.+++|++|++++|++++.+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEEL--------EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTC--------CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCC--------cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 3478999999999998 5666555555554 9999999999865 788999999999999999997788888
Q ss_pred cCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCC---CCCCccCCCCccEEEccC
Q 015663 84 VNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSH 146 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~ 146 (403)
.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ .. +..+++|++||+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV--FKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH--HHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH--HHHCCCcccccCCC
Confidence 8899999999999999984 34789999999999999999976544 22 37789999998864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=4.4e-15 Score=123.97 Aligned_cols=91 Identities=26% Similarity=0.277 Sum_probs=68.8
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45566666666666655556677788888888888888866666677888888888888888866666677788888888
Q ss_pred CcCCcCccCCC
Q 015663 284 LSYNQFEGPIP 294 (403)
Q Consensus 284 L~~N~l~~~ip 294 (403)
+++|++++..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 88888876555
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.2e-14 Score=132.04 Aligned_cols=225 Identities=13% Similarity=0.016 Sum_probs=141.1
Q ss_pred CCCCEEECcCCcCc--ccCCccccCCCCcCEEEccCCcCcCCCCccccC--------CCCCCEEEccCCcCCcCCChhcc
Q 015663 39 LTHKVLDMRMNNFN--GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN--------CHHLEVLNVGNNQINDNFPNWLE 108 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~ 108 (403)
++|+.|||++|.+. ...+.. ++.++.+.+..|.+ .+.+|.+ +++|+.+++.+ .++.+.+.+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 56788888888887 222222 22345556665543 3356777 99999999999 88887788999
Q ss_pred CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc----cccchhhhhhhhhhcccCCCcccccccCCCCCCC
Q 015663 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184 (403)
Q Consensus 109 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 184 (403)
.+++|+.+++.+|.+....+..+ .+..++..+..+.+... .... ..+.++..+... ..+...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~-------i~~~~~---- 187 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETT-------IQVGAM---- 187 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEE-------EEECTT----
T ss_pred cCcccceEEcCCCCccccchhhh--cCCCceEEecCcchhhhhccccccc-ccccccccccee-------EEecCC----
Confidence 99999999999998865444433 66677777766553221 0000 001111111100 000000
Q ss_pred cceEEEEEEeccchhhhh---hcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEecc
Q 015663 185 YYESIILTIKGIDIKMER---ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLS 261 (403)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 261 (403)
..+....+. ...+++.+.+.++-...........+++|+.++|++|+++...+.+|.++++|+.+++.
T Consensus 188 ---------~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 188 ---------GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp ---------CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 001111111 14556677776653221111111237899999999999996666789999999999999
Q ss_pred CCcCCCCCCccccCCCCCC-EEeCcCCcCccCCCCC
Q 015663 262 SNMLVGHIPTQLTSLKYLS-VLNLSYNQFEGPIPRG 296 (403)
Q Consensus 262 ~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~ip~~ 296 (403)
+| +....+.+|.++.+|+ .+++.+ .++ .|+..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~ 291 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFG 291 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTT
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cce-EEchh
Confidence 98 7767788999999999 999988 665 45544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4e-15 Score=124.13 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=26.6
Q ss_pred cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
.++++|+.|++++|.++. +|......++|++|++++|.+++. ..+ ..+++|++|++++|.++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc
Confidence 344444444444444443 222111122455555555544332 112 44455555555555544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=3.4e-15 Score=124.51 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=105.9
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
++++|++|++++|.++.++. +..+. ++|++|++++|.+++. +.|..+++|++|++++|++++..+..|.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence 56789999999999986621 21211 2458899999999864 6888999999999999999965445568
Q ss_pred CCCCCCEEEccCCcCCcCCCh--hccCCCCCcEEEcccccccCcCCCC--CCccCCCCccEEEccCCcccc
Q 015663 85 NCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~n~l~~ 151 (403)
++++|++|++++|.++. +|. .+..+++|+.|++++|.++. +|.. ..+..+++|+.||++.|....
T Consensus 86 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999999999976 565 78899999999999999864 4442 013788999999999998764
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.9e-14 Score=117.30 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=78.8
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|++++|+|++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 66777777776 4665553 67778888888888666777778888888888888887766666777888888888888
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 153 (403)
++++..+..+ ..+++|++|++++|.++...
T Consensus 89 ~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAF--DNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHh--cCCCCCCEEEeCCCCCCCCc
Confidence 8766555444 67788888888888777554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=7.2e-14 Score=115.69 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=94.4
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
..+.+++++|.++.++.... ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~-----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP-----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCccCC-----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 35789999999998764332 2348889999999988899999999999999999999977777789999
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCc
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 126 (403)
+|++|++++|++++..+..|..+++|++|++++|.+...
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999999997777899999999999999998644
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=5.5e-17 Score=138.23 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=41.9
Q ss_pred CCCcCEEEccCCcCcCCCCc------cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccC
Q 015663 62 SCNLTSLNLNGNRLEGPLPP------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP 135 (403)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 135 (403)
...++.++++.+.+++..|. .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+ ..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~ 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AV 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hc
Confidence 33444444444444444443 55555555555555555555 34 4555555555555555553 233221 33
Q ss_pred CCCccEEEccCCcccc
Q 015663 136 FPSLRIIDLSHNEFTG 151 (403)
Q Consensus 136 l~~L~~L~l~~n~l~~ 151 (403)
+++|++|++++|.+++
T Consensus 92 ~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHCSEEEEEEEECCC
T ss_pred CCcCCEEECcCCcCCc
Confidence 3455555555555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=4.8e-17 Score=138.58 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=81.8
Q ss_pred CCCEEECcCCcCcccCCc------cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCC
Q 015663 40 THKVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 113 (403)
.++.++++.+.+.+..|. .|..+++|++|++++|++++ +| .+.++++|+.|++++|.++. +|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcC
Confidence 335556666666666555 88889999999999999985 77 88889999999999999985 67777778899
Q ss_pred cEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 114 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
++|++++|++++ +| . +..+++|++|++++|.+++
T Consensus 96 ~~L~L~~N~l~~-l~-~--~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-G--IEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp SEEEEEEEECCC-HH-H--HHHHHHSSEEEESEEECCC
T ss_pred CEEECcCCcCCc-CC-c--cccCCCCCEEECCCCcCCc
Confidence 999999998865 33 2 3667778888888877764
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=8.2e-14 Score=115.75 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=83.5
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67788888886 6666654 68888888888888777778888888888888888888865666778888888888888
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 153 (403)
++++..+..+ ..+++|++|++++|.+....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 8876554434 77888888888888887554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=2.4e-13 Score=112.96 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=91.7
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
-+.+++++|.++.++....+ +|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIPT-----------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCCCcCC-----------CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 36899999999877653322 3488899999999888999999999999999999999665566899999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC
Q 015663 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 125 (403)
|++|++++|.|++..+..|..+++|++|++++|.+..
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999999999766679999999999999999854
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=2e-12 Score=121.79 Aligned_cols=241 Identities=10% Similarity=0.069 Sum_probs=147.7
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
..++.+.+.+ .++.+....|.+- +|+.+++..+ ++..-..+|.+ ++|+.+.+.. .++..-+.+|.+|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~---------~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS---------QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC---------CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC---------CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCc
Confidence 4555555543 3554444333331 2366666555 55445556666 3677777775 5554555677777
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
++|+.+++.+|.++.+...+|. ..+|+.+.+..+ +. .++.. +|.++++|+.+++..+ ++.....+ +.+ ..|..
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~-aF~~~~~L~~l~l~~~-l~~I~~~a-F~~-~~L~~ 252 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQ-AFLKTSQLKTIEIPEN-VSTIGQEA-FRE-SGITT 252 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTT-TTTTCTTCCCEECCTT-CCEECTTT-TTT-CCCSE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhh-HhhCCCCCCEEecCCC-ccCccccc-ccc-CCccE
Confidence 8888888877777775555555 577777777644 32 23222 2467777777777664 33222222 211 11111
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccc-----ccCCcccCCCCCCCEEEecCCCC
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNL 241 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l 241 (403)
+.. ...+..+....+..+++|+.+++.+|.+. ...+..|.++++|+.++|. +.+
T Consensus 253 i~l--------------------p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 253 VKL--------------------PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp EEE--------------------ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred EEe--------------------CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 111 00112233445556788888888887664 3556778888888888888 456
Q ss_pred CCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 242 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
+.....+|.++++|+.+++..+ ++.....+|.++ +|+.+++++|.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 6555678888888888888655 665667788888 8888888888665
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.6e-12 Score=118.76 Aligned_cols=248 Identities=11% Similarity=0.070 Sum_probs=153.0
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
.+|+.+++..+ ++.+....|.+- +|+.+++.. .++..-+.+|.++.+|+.+++++|+++.....+|. +
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~---------~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS---------TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC---------CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred CCccEEEeCCC-ccEECHHhcCCC---------CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 46888888766 666655444431 235566654 44444556677777777777777777643334444 4
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
++|+.+.+..+ ++.+...+|..+++|+.+++..+ ++ .++.. +|.+ .+|+.+++.+ .++.... ..+.++..|+.
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~-aF~~-~~L~~i~lp~-~i~~I~~-~aF~~c~~L~~ 275 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQE-AFRE-SGITTVKLPN-GVTNIAS-RAFYYCPELAE 275 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTT-TTTT-CCCSEEEEET-TCCEECT-TTTTTCTTCCE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccc-cccc-CCccEEEeCC-CccEECh-hHhhCCCCCCE
Confidence 67777777643 55555566677777777777654 22 22222 1233 5666666633 3332222 22444444433
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 246 (403)
+........ ......+....+..+++|+.+++. +.++......|.++++|+.+.|..+ ++....
T Consensus 276 l~l~~~~~~--------------~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 276 VTTYGSTFN--------------DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp EEEESSCCC--------------CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EEeCCcccc--------------CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 322000000 000011334456668899999999 4577677788999999999999655 665667
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCc
Q 015663 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFE 290 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~ 290 (403)
.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 789998 999999999998877778888875 6888888776553
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=4.3e-12 Score=117.61 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=78.0
Q ss_pred EEECcCC-cCcccCCccccCCCCcCEEEccC-CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 43 VLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 43 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
.++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4666 77777888888875 788766666788888888888888888887777778888888888888
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
|++++..+..+ ..++ |+.|++.+|.+.....
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCc
Confidence 88865444433 3444 8888888888775543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=2.3e-14 Score=133.81 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=103.1
Q ss_pred CCCCEEEccCCcCCcCCChhccC-----CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhh
Q 015663 87 HHLEVLNVGNNQINDNFPNWLEI-----LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF 161 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 161 (403)
++|+.|++++|.++......+.. .++|++|++++|.+++.....+ ...+++|+.|++++|.++......+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56777777777776533333222 2577777777777643222111 12345778888888877643222211110
Q ss_pred hhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc----CCcccCCCCCCCEEEec
Q 015663 162 KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNIS 237 (403)
Q Consensus 162 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~ 237 (403)
. ...+.|+.|+|++|.++.. ++..+...++|++|+|+
T Consensus 151 ~---------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 151 L---------------------------------------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp H---------------------------------------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred H---------------------------------------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence 0 1145688888888887642 34445667888888888
Q ss_pred CCCCCCC----cCccccCCCCCCEEeccCCcCCCC----CCccccCCCCCCEEeCcCCcCcc
Q 015663 238 HNNLTGD----IPSSLRNLTEVESLDLSSNMLVGH----IPTQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 238 ~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 291 (403)
+|.+++. ++..+...++|+.|+|++|.+++. ++..+...++|++|||++|.++.
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 8888642 245566778899999999988753 33344556889999999998863
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.7e-14 Score=134.63 Aligned_cols=188 Identities=18% Similarity=0.149 Sum_probs=97.4
Q ss_pred CCcCEEEccCCcCcCCCCcccc-----CCCCCCEEEccCCcCCcCCChhc-cCCCCCcEEEcccccccCcCCCCC--Cc-
Q 015663 63 CNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENT--TI- 133 (403)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~~- 133 (403)
+.|++|++++|.++......+. +.++|+.|++++|.++......+ ..+++|+.|++++|.+++.....+ .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455666666655532222221 12456666666666543222222 123456666666666533211111 00
Q ss_pred cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcc
Q 015663 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS 213 (403)
Q Consensus 134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 213 (403)
...++|++|++++|.++......+...+ ...+.|++|+|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----------------------------------------~~~~~L~~L~Ls 191 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL----------------------------------------AGNTSVTHLSLL 191 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH----------------------------------------HTCSSCCEEECT
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH----------------------------------------hcCCCcCEEeCC
Confidence 1245677777777776543221111111 114567777777
Q ss_pred cCccccc----CCcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccccCCC-----CCC
Q 015663 214 SNKFQGG----IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-----YLS 280 (403)
Q Consensus 214 ~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~ 280 (403)
+|.+++. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.|+......+..+. .|+
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~ 271 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence 7777643 244556667888888888888642 334445567888888888888755444333221 155
Q ss_pred EEe--CcCCcCc
Q 015663 281 VLN--LSYNQFE 290 (403)
Q Consensus 281 ~L~--L~~N~l~ 290 (403)
.+. +..|.++
T Consensus 272 ~l~~ll~~~~~~ 283 (372)
T 3un9_A 272 VVVSLTEGTAVS 283 (372)
T ss_dssp EECCCC----CH
T ss_pred hhHhhhcCCccC
Confidence 555 5555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=7.1e-12 Score=116.09 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=91.0
Q ss_pred cEEECCCC-CCCCcCCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663 10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 10 ~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
..++.+++ .++.+++ +..+..| +.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|.+++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCccCC--CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 35789988 8988654 6666655 9999996 999988889999999999999999999998888999999
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC
Q 015663 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 125 (403)
+|+.|+|++|+|++..+..+..+. |+.|++.+|.+..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999999986666666665 9999999999853
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.2e-09 Score=101.05 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=52.2
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
..+..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.....+|.++.+|+.+++..+ ++.....+|.+|.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 34444666666666543 44344556667777777777533 54344556667777777777655 55445566777777
Q ss_pred CCEEeCcCC
Q 015663 279 LSVLNLSYN 287 (403)
Q Consensus 279 L~~L~L~~N 287 (403)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 777776543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=4.1e-11 Score=110.92 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=7.0
Q ss_pred CCCCCEEeccCCcCC
Q 015663 252 LTEVESLDLSSNMLV 266 (403)
Q Consensus 252 l~~L~~L~Ls~n~l~ 266 (403)
+++|++|+|+.|.+.
T Consensus 278 ~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 278 LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGCSEEECCSSCCB
T ss_pred CCCCCEEECCCCCCC
Confidence 344444444444444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=8.5e-10 Score=102.09 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=43.0
Q ss_pred cccceEEEcccCcccccCCccc---CCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccccC-
Q 015663 204 LTIFMTIDLSSNKFQGGIPEVV---GKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTS- 275 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~- 275 (403)
+++|+.|+|++|.+++..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 3445555555555443222111 1345666667766666542 2233345567777777777766443333332
Q ss_pred CCCCCEEeCcCCc
Q 015663 276 LKYLSVLNLSYNQ 288 (403)
Q Consensus 276 l~~L~~L~L~~N~ 288 (403)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456776665
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=4.1e-08 Score=92.38 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=154.0
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC------------CCCCEEECcCC--------------------
Q 015663 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMN-------------------- 49 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~n-------------------- 49 (403)
++++|+.+.+.. .++.+.. ..+.+|+.+++..+ .+|+.+.+..+
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 467788888763 3555544 34566777777654 33333333211
Q ss_pred -cCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc----
Q 015663 50 -NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW---- 124 (403)
Q Consensus 50 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---- 124 (403)
........+|.++.+|+.+.+.++..+ ....+|.++++|+.+++..+ ++.+...+|..+..|+.+.+..+...
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~ 225 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF 225 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT
T ss_pred ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh
Confidence 111122356778888999998766433 55667888888888888765 44444455666665555554332110
Q ss_pred --------C-cCCC------CCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEE
Q 015663 125 --------G-PIGE------NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI 189 (403)
Q Consensus 125 --------~-~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (403)
. .+|. ...+.....|+.+.+..+... . ....+..+..+.............. ......+..+
T Consensus 226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i-~~~~F~~~~~l~~~~~~~~~i~~~~-F~~~~~L~~i 302 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I-GGSLFYNCSGLKKVIYGSVIVPEKT-FYGCSSLTEV 302 (394)
T ss_dssp TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E-CSCTTTTCTTCCEEEECSSEECTTT-TTTCTTCCEE
T ss_pred hcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e-eccccccccccceeccCceeecccc-cccccccccc
Confidence 0 0111 112356678888888765432 1 1112333333322211111000000 0000111111
Q ss_pred EE--EEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663 190 IL--TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 190 ~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
.. .+..+....+..+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ +.
T Consensus 303 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 303 KLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE- 378 (394)
T ss_dssp EECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred ccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence 11 223345566777899999999754 66566788999999999999877 66556678999999999999765 33
Q ss_pred CCCccccCCCCCCEE
Q 015663 268 HIPTQLTSLKYLSVL 282 (403)
Q Consensus 268 ~~p~~~~~l~~L~~L 282 (403)
.+...|.++++|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 345678888888765
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.60 E-value=3.7e-06 Score=78.89 Aligned_cols=270 Identities=10% Similarity=0.099 Sum_probs=133.9
Q ss_pred CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC----------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
.|+.+.+-. .++.+.. ..+.+|+.+.+..+ .+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366666653 2554444 34455666655432 33444433332 332344567778888888
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 148 (403)
.+..+. +.....+|.++.+|+.+.+..+ ++.+...+|. ..+|+.+.+..+-. ..... .+....++.......+.
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~--af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTN--AFSECFALSTITSDSES 216 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTT--TTTTCTTCCEEEECCSS
T ss_pred ccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccc--hhhhccccceecccccc
Confidence 887543 3255567888888888888655 4443444554 35677777655422 11111 22444555555443322
Q ss_pred cccccc---h-------hh--hhhhhhhcccCCCcccccccC--CCCCCCcceEEEE--EEeccchhhhhhcccceEEEc
Q 015663 149 FTGVLL---T-------GY--LDNFKAMMHGNNISVEVDYMT--PLNSSNYYESIIL--TIKGIDIKMERILTIFMTIDL 212 (403)
Q Consensus 149 l~~~~~---~-------~~--~~~l~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L 212 (403)
...... . .. ......+..... ......+. .......+..+.. ....+....+..+..|+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEF 295 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEecccccceecCcccccccccccccC
Confidence 111000 0 00 000000000000 00000000 0000000111110 011122334445677777777
Q ss_pred ccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcC
Q 015663 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289 (403)
Q Consensus 213 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 289 (403)
. +.++......|.++.+|+.++|..+ ++.....+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++..
T Consensus 296 ~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 296 S-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred C-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 5 3444455566777788888888654 54344567777788888887544 5545566778888888888777654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=1.8e-08 Score=84.13 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=32.2
Q ss_pred CCCCCEEEecCCCCCCC----cCccccCCCCCCEEec--cCCcCCCC----CCccccCCCCCCEEeCcCCcCc
Q 015663 228 LNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDL--SSNMLVGH----IPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 228 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
.++|++|+|++|.|... +...+...++|++|+| ++|.+... +...+...+.|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555421 2334444555666666 55655533 2233344456666666666553
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=8.3e-06 Score=76.47 Aligned_cols=88 Identities=8% Similarity=0.102 Sum_probs=64.0
Q ss_pred chhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015663 197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276 (403)
Q Consensus 197 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 276 (403)
....+..+..|+.+.+..+..+ .....|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.+|
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3445566778888888765543 556677888889998886 4455455567888889999998764 554556788889
Q ss_pred CCCCEEeCcCC
Q 015663 277 KYLSVLNLSYN 287 (403)
Q Consensus 277 ~~L~~L~L~~N 287 (403)
.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s 344 (394)
T 4gt6_A 334 EQLERIAIPSS 344 (394)
T ss_dssp TTCCEEEECTT
T ss_pred CCCCEEEECcc
Confidence 99999888654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=9.1e-08 Score=79.83 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=82.8
Q ss_pred CCCCccEEECCCC-CCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC-
Q 015663 5 GIATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP- 78 (403)
Q Consensus 5 ~~~~L~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~- 78 (403)
..+.|++|+|++| .+.......+.. -+..|++|++|+|++|.+... +...+...+.|++|+|++|.++..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~----~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH----HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4577888888888 877542100000 122335668999999999743 344556678999999999999843
Q ss_pred ---CCccccCCCCCCEEEc--cCCcCCcCC----ChhccCCCCCcEEEccccccc
Q 015663 79 ---LPPSLVNCHHLEVLNV--GNNQINDNF----PNWLEILPELQVLILRSNRFW 124 (403)
Q Consensus 79 ---~p~~~~~l~~L~~L~l--~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~ 124 (403)
+...+...++|++|++ ++|.++... ...+...+.|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566778889999999 889997643 334556689999999999873
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=3.3e-05 Score=71.89 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=52.1
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015663 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 279 (403)
.+..+..|+.+.+..+ ++......|.++++|+.+.+.++.++.....+|.++.+|+.+++..+ ++.....+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3344566666666543 33344455667777777777776666444566777777777777543 443445667777777
Q ss_pred CEEeCcC
Q 015663 280 SVLNLSY 286 (403)
Q Consensus 280 ~~L~L~~ 286 (403)
+.+.+..
T Consensus 336 ~~i~ip~ 342 (379)
T 4h09_A 336 STISYPK 342 (379)
T ss_dssp CCCCCCT
T ss_pred CEEEECC
Confidence 7666543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=1.6e-07 Score=82.50 Aligned_cols=66 Identities=29% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCCccccCCC--CCCEEeCcCCcCccCCC
Q 015663 227 KLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK--YLSVLNLSYNQFEGPIP 294 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~ip 294 (403)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34555555555555554 2334444555555555555555533 1122222 55555555555554444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.9e-07 Score=80.91 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=70.3
Q ss_pred EECcCCcCc---ccCCccccCCCCcCEEEccCCcCcC--CCCccccCCCCCCEEEccCCcCCcCCChhccCCC--CCcEE
Q 015663 44 LDMRMNNFN---GKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP--ELQVL 116 (403)
Q Consensus 44 L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L 116 (403)
++++.|... +.++-...++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 567777433 2222223468899999999999996 4556677899999999999999874 2344444 89999
Q ss_pred EcccccccCcCCCC-----CCccCCCCccEEEc
Q 015663 117 ILRSNRFWGPIGEN-----TTIVPFPSLRIIDL 144 (403)
Q Consensus 117 ~l~~n~l~~~~~~~-----~~~~~l~~L~~L~l 144 (403)
++++|.+.+.+|.. ..+..+|+|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999998766531 11367888988853
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=0.00079 Score=62.45 Aligned_cols=87 Identities=11% Similarity=0.010 Sum_probs=69.0
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 278 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 278 (403)
..+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 33445778888888765 55466677888999999999754 55345567889999999999999888677889999999
Q ss_pred CCEEeCcCC
Q 015663 279 LSVLNLSYN 287 (403)
Q Consensus 279 L~~L~L~~N 287 (403)
|+.+++..+
T Consensus 312 L~~i~lp~~ 320 (379)
T 4h09_A 312 LSSVTLPTA 320 (379)
T ss_dssp CCEEECCTT
T ss_pred CCEEEcCcc
Confidence 999999755
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=6e-07 Score=73.25 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=69.3
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCC----CCCCEEeccCC-cCCCCCCccccCCCC
Q 015663 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNL----TEVESLDLSSN-MLVGHIPTQLTSLKY 278 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 278 (403)
..|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+ ++|+.|+|++| +++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999987766778899999999999995 775545556654 47999999998 488665566788999
Q ss_pred CCEEeCcCCc
Q 015663 279 LSVLNLSYNQ 288 (403)
Q Consensus 279 L~~L~L~~N~ 288 (403)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=9.4e-07 Score=72.11 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCc-CCcCCChhccCC----CCCcEEEccccc-ccCcCC
Q 015663 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIG 128 (403)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~~ 128 (403)
+|.....-..|+.|+++++.++..--..+.++++|++|+|++|. |+...-..+..+ ++|++|++++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333467888888877775444556778888888888874 554333344443 368888888764 433221
Q ss_pred CCCCccCCCCccEEEccCCc
Q 015663 129 ENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~n~ 148 (403)
.. +..+++|++|+++++.
T Consensus 133 ~~--L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IA--LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HH--GGGCTTCCEEEEESCT
T ss_pred HH--HhcCCCCCEEECCCCC
Confidence 22 2567888888888864
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=7.8e-05 Score=61.90 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=55.6
Q ss_pred ccceEEEcccCcccccC----CcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCc---CCCC----C
Q 015663 205 TIFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNM---LVGH----I 269 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~----~ 269 (403)
..|+.|+|++|.+.... .+.+..-+.|++|+|++|.|... +...+..-+.|+.|+|++|. +... +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 56788888888887432 33344457788888888888742 23445555678888887653 3321 3
Q ss_pred CccccCCCCCCEEeCcCCcC
Q 015663 270 PTQLTSLKYLSVLNLSYNQF 289 (403)
Q Consensus 270 p~~~~~l~~L~~L~L~~N~l 289 (403)
...+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34455567788888887765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.00097 Score=51.57 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=18.4
Q ss_pred CCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcC
Q 015663 254 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289 (403)
Q Consensus 254 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 289 (403)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444445555555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.12 E-value=0.00021 Score=59.29 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=72.9
Q ss_pred CCccEEECCCC-CCCCcCCC-CCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC--
Q 015663 7 ATLYYLDLSNN-FLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP-- 78 (403)
Q Consensus 7 ~~L~~L~Ls~n-~l~~~~~~-~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-- 78 (403)
+.|++|+|++| .|...... -.. -|..|++|+.|+|++|.|... +...+..-+.|++|+|++|.|+..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~-----aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIE-----AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHH-----HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHH-----HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 56777787774 66533110 000 122346779999999999843 334455667899999999999843
Q ss_pred --CCccccCCCCCCEEEccCCc---CCcC----CChhccCCCCCcEEEcccccc
Q 015663 79 --LPPSLVNCHHLEVLNVGNNQ---INDN----FPNWLEILPELQVLILRSNRF 123 (403)
Q Consensus 79 --~p~~~~~l~~L~~L~l~~n~---l~~~----~p~~~~~l~~L~~L~l~~n~l 123 (403)
+..++..-+.|++|+|++|. +... +...+..-+.|+.|+++.|..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33456667789999998753 3321 223445557899999987754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.0013 Score=50.85 Aligned_cols=55 Identities=25% Similarity=0.362 Sum_probs=26.2
Q ss_pred EEECcCCcCc-ccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcC
Q 015663 43 VLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99 (403)
Q Consensus 43 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 99 (403)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 23333221 1355555555555533334445555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.27 E-value=9.4 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=17.5
Q ss_pred ccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663 81 PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
.+|.++++|+.+.+-.+ ++.+...+|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444444444444432 2333334444555555554443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.99 E-value=7.7 Score=27.73 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=35.9
Q ss_pred CcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC
Q 015663 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (403)
Q Consensus 49 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 97 (403)
..++..-..+|.++.+|+.+.+..+ ++..-..+|.+|++|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555678888999999999865 44456678889999999988764
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.36 E-value=13 Score=22.02 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=2.2
Q ss_pred eheeeh
Q 015663 354 GYGSGL 359 (403)
Q Consensus 354 ~~~~~~ 359 (403)
|+++|+
T Consensus 16 gVVgGv 21 (44)
T 2ks1_B 16 GMVGAL 21 (44)
T ss_dssp HHHHHH
T ss_pred ehhHHH
Confidence 333333
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.33 E-value=5.9 Score=23.45 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=4.9
Q ss_pred eeehhhhhhhHHH
Q 015663 356 GSGLVIGLSVGYM 368 (403)
Q Consensus 356 ~~~~~~~~~~~~~ 368 (403)
++|+++.+++++.
T Consensus 18 vVGvll~vi~~l~ 30 (44)
T 2jwa_A 18 VVGILLVVVLGVV 30 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444433333333
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=27.26 E-value=8.7 Score=22.17 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.7
Q ss_pred eeheeehhh
Q 015663 353 MGYGSGLVI 361 (403)
Q Consensus 353 ~~~~~~~~~ 361 (403)
.++++|+++
T Consensus 17 ~~vv~Gv~l 25 (41)
T 2k9y_A 17 GGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 344444443
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.06 E-value=14 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=4.2
Q ss_pred eheeehhhhh
Q 015663 354 GYGSGLVIGL 363 (403)
Q Consensus 354 ~~~~~~~~~~ 363 (403)
|++++.++++
T Consensus 15 GiVvG~v~gv 24 (38)
T 2k1k_A 15 AVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4444444333
Done!