Query 015666
Match_columns 403
No_of_seqs 281 out of 2473
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 2.1E-26 4.6E-31 233.3 16.1 159 170-344 9-169 (557)
2 KOG4350 Uncharacterized conser 99.9 2.4E-26 5.2E-31 210.0 11.1 170 172-355 30-199 (620)
3 KOG4441 Proteins containing BT 99.9 3.3E-25 7.2E-30 223.9 14.4 161 170-344 20-180 (571)
4 PHA02790 Kelch-like protein; P 99.9 2.4E-25 5.3E-30 222.4 12.0 154 173-342 9-166 (480)
5 PHA03098 kelch-like protein; P 99.9 5.3E-25 1.1E-29 224.0 14.2 144 183-344 6-151 (534)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 1E-21 2.2E-26 163.5 12.6 130 19-152 1-148 (148)
7 cd03774 MATH_SPOP Speckle-type 99.9 2.1E-21 4.5E-26 161.8 13.9 131 16-155 2-138 (139)
8 cd03777 MATH_TRAF3 Tumor Necro 99.9 3.4E-21 7.3E-26 166.1 13.4 134 16-153 36-185 (186)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 5.1E-21 1.1E-25 161.7 12.2 132 19-152 1-154 (154)
10 cd03772 MATH_HAUSP Herpesvirus 99.8 1.1E-20 2.5E-25 156.9 13.1 124 18-155 2-134 (137)
11 cd03779 MATH_TRAF1 Tumor Necro 99.8 7.4E-21 1.6E-25 157.5 11.8 129 19-152 1-147 (147)
12 cd03776 MATH_TRAF6 Tumor Necro 99.8 5.6E-21 1.2E-25 160.6 10.4 130 19-152 1-147 (147)
13 cd00270 MATH_TRAF_C Tumor Necr 99.8 7.7E-21 1.7E-25 160.4 10.9 131 19-152 1-149 (149)
14 cd03773 MATH_TRIM37 Tripartite 99.8 2.3E-20 5E-25 154.2 12.0 123 19-152 5-130 (132)
15 cd03771 MATH_Meprin Meprin fam 99.8 4.7E-20 1E-24 155.4 12.5 130 19-152 2-167 (167)
16 KOG2075 Topoisomerase TOP1-int 99.8 1.8E-19 3.9E-24 169.0 15.0 177 165-356 93-275 (521)
17 cd03775 MATH_Ubp21p Ubiquitin- 99.8 1.6E-19 3.5E-24 149.2 12.3 117 20-152 2-134 (134)
18 PF00651 BTB: BTB/POZ domain; 99.8 5.1E-19 1.1E-23 141.5 8.6 108 177-295 1-110 (111)
19 KOG4591 Uncharacterized conser 99.8 1.2E-18 2.6E-23 145.4 8.9 167 170-355 50-219 (280)
20 cd03778 MATH_TRAF2 Tumor Necro 99.8 8.6E-18 1.9E-22 140.6 11.8 134 16-152 16-164 (164)
21 cd00121 MATH MATH (meprin and 99.7 5E-17 1.1E-21 132.5 13.9 119 19-152 1-126 (126)
22 KOG4682 Uncharacterized conser 99.7 6.3E-17 1.4E-21 148.6 12.1 164 177-362 60-227 (488)
23 PF00917 MATH: MATH domain; I 99.7 3E-16 6.6E-21 126.9 9.5 113 25-153 1-119 (119)
24 KOG0783 Uncharacterized conser 99.7 2.5E-16 5.3E-21 155.8 8.8 167 185-359 709-876 (1267)
25 smart00225 BTB Broad-Complex, 99.6 4.9E-16 1.1E-20 118.5 8.1 90 188-289 1-90 (90)
26 cd03783 MATH_Meprin_Alpha Mepr 99.6 4.4E-15 9.5E-20 123.7 10.1 133 19-152 2-167 (167)
27 cd03782 MATH_Meprin_Beta Mepri 99.6 8.3E-15 1.8E-19 121.2 10.8 131 19-151 2-166 (167)
28 smart00061 MATH meprin and TRA 99.4 2.4E-12 5.2E-17 99.5 9.2 68 21-98 2-74 (95)
29 KOG1987 Speckle-type POZ prote 99.3 2.5E-11 5.4E-16 114.4 12.8 234 23-344 8-249 (297)
30 COG5077 Ubiquitin carboxyl-ter 98.7 8.3E-08 1.8E-12 95.6 10.8 124 15-155 35-172 (1089)
31 KOG0783 Uncharacterized conser 98.7 4.1E-08 8.9E-13 98.5 7.4 82 169-250 537-634 (1267)
32 KOG2838 Uncharacterized conser 98.6 5.9E-08 1.3E-12 85.7 5.8 134 171-304 220-396 (401)
33 KOG0511 Ankyrin repeat protein 98.5 2.4E-07 5.2E-12 85.5 7.6 134 196-344 301-444 (516)
34 KOG2838 Uncharacterized conser 98.5 2.3E-07 5E-12 82.0 5.7 107 167-282 111-219 (401)
35 KOG2716 Polymerase delta-inter 98.2 1.3E-05 2.8E-10 70.9 9.3 96 189-295 7-104 (230)
36 PF02214 BTB_2: BTB/POZ domain 97.8 2.6E-05 5.7E-10 59.9 4.2 88 189-288 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.8 0.00016 3.4E-09 53.8 7.8 89 189-280 19-111 (112)
38 PF11822 DUF3342: Domain of un 96.8 0.0023 5.1E-08 59.2 5.8 88 196-295 14-103 (317)
39 smart00512 Skp1 Found in Skp1 96.6 0.011 2.3E-07 46.3 7.6 92 189-281 4-104 (104)
40 PF03931 Skp1_POZ: Skp1 family 96.4 0.016 3.5E-07 40.5 6.7 56 189-247 3-59 (62)
41 KOG1665 AFH1-interacting prote 96.3 0.014 3E-07 50.9 6.7 92 188-290 10-105 (302)
42 PF07707 BACK: BTB And C-termi 96.3 0.006 1.3E-07 47.3 4.3 50 301-355 1-50 (103)
43 KOG2714 SETA binding protein S 96.2 0.014 3E-07 55.7 7.2 87 188-286 12-102 (465)
44 KOG0511 Ankyrin repeat protein 96.1 0.004 8.7E-08 58.2 2.9 101 174-288 134-238 (516)
45 KOG1724 SCF ubiquitin ligase, 95.8 0.078 1.7E-06 44.7 9.1 102 194-296 13-127 (162)
46 KOG0297 TNF receptor-associate 95.3 0.013 2.7E-07 57.2 2.8 79 15-94 276-365 (391)
47 smart00875 BACK BTB And C-term 95.0 0.018 3.9E-07 44.2 2.6 49 301-354 1-49 (101)
48 KOG1778 CREB binding protein/P 93.8 0.026 5.6E-07 52.9 1.1 148 188-348 28-176 (319)
49 KOG2715 Uncharacterized conser 93.6 0.45 9.8E-06 39.7 7.8 96 188-295 22-121 (210)
50 COG5201 SKP1 SCF ubiquitin lig 92.3 1.4 3E-05 35.1 8.5 108 189-299 4-125 (158)
51 KOG1863 Ubiquitin carboxyl-ter 91.5 0.25 5.5E-06 54.7 5.1 152 39-218 42-201 (1093)
52 PF01466 Skp1: Skp1 family, di 89.0 0.6 1.3E-05 34.2 3.8 48 265-312 12-62 (78)
53 KOG2075 Topoisomerase TOP1-int 84.7 1.7 3.6E-05 42.7 5.1 57 296-357 185-246 (521)
54 KOG2723 Uncharacterized conser 71.2 12 0.00025 33.4 5.8 95 186-291 7-105 (221)
55 KOG3840 Uncharaterized conserv 64.2 11 0.00023 35.0 4.3 86 185-281 94-184 (438)
56 PF07707 BACK: BTB And C-termi 53.0 34 0.00073 25.8 5.0 59 270-330 2-74 (103)
57 PF11822 DUF3342: Domain of un 52.0 5.9 0.00013 37.1 0.6 41 295-337 71-111 (317)
58 PHA03098 kelch-like protein; P 50.0 30 0.00066 35.3 5.5 30 296-325 73-102 (534)
59 PF00651 BTB: BTB/POZ domain; 46.0 16 0.00035 27.9 2.2 29 297-325 80-108 (111)
60 PHA02713 hypothetical protein; 35.3 46 0.001 34.3 4.1 31 295-325 90-120 (557)
61 PHA02790 Kelch-like protein; P 35.0 61 0.0013 32.7 4.9 31 265-295 121-151 (480)
62 KOG4682 Uncharacterized conser 34.7 32 0.00069 33.3 2.5 32 264-295 170-201 (488)
63 smart00875 BACK BTB And C-term 28.4 53 0.0011 24.4 2.5 25 271-295 3-27 (101)
64 PF02519 Auxin_inducible: Auxi 20.2 4.1E+02 0.0088 20.4 6.2 55 188-245 40-99 (100)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=233.30 Aligned_cols=159 Identities=23% Similarity=0.346 Sum_probs=148.8
Q ss_pred CCchHHHHHHHhhcCCCCceEEEeC-CceeeeehhhhhhcCHHHHHHhcccccCCC-CCcEEEcCCCHHHHHHHHHHHhc
Q 015666 170 PSDMGQGLKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKAMLLFIYT 247 (403)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~Dv~~~v~-~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~d~~~~~f~~~L~~iYt 247 (403)
...+++.|++|+.++.++||+|.++ |++|+|||.|||++|+||++||.++|+|.. +.+|+|.++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 3567899999999999999999998 899999999999999999999999999864 78899999999999999999999
Q ss_pred CCCCCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCC
Q 015666 248 DKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATP 327 (403)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 327 (403)
+.+. .+++.+||.+|++|+++.|++.|+++|.+.++++||+.++.+|..+.+..|.+.|.+||.
T Consensus 89 ~~i~--------------~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~-- 152 (557)
T PHA02713 89 RHIS--------------SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM-- 152 (557)
T ss_pred CCCC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--
Confidence 8743 479999999999999999999999999999999999999998989988889999999999
Q ss_pred CChHHHHcccchhHHHh
Q 015666 328 ANLGVIMQSEGFKHLEE 344 (403)
Q Consensus 328 ~~~~~~~~~~~f~~l~~ 344 (403)
+||.++.++++|.+|+.
T Consensus 153 ~~f~~v~~~~ef~~L~~ 169 (557)
T PHA02713 153 SNIPTLITTDAFKKTVF 169 (557)
T ss_pred HHHHHHhCChhhhhCCH
Confidence 99999999999988763
No 2
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=2.4e-26 Score=210.02 Aligned_cols=170 Identities=29% Similarity=0.444 Sum_probs=159.3
Q ss_pred chHHHHHHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCC
Q 015666 172 DMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFP 251 (403)
Q Consensus 172 ~l~~~l~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~ 251 (403)
.+.+++.+++.+++++||+|+|++++|+|||.|||+||.||++|++|+|.|+.+..|.|++...++|+.+|+|||+|.+.
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~ 109 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKID 109 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhccee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChH
Q 015666 252 DVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLG 331 (403)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~ 331 (403)
... ...+...+.|.+|++|+++.|.....++|++.+..+|++.++..|..|++.+|.+.|+.|+. +|..
T Consensus 110 l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA~ 178 (620)
T KOG4350|consen 110 LAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNAD 178 (620)
T ss_pred ccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCHH
Confidence 655 45788999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHcccchhHHHhhCcHHHHHHHH
Q 015666 332 VIMQSEGFKHLEESCPSLLSELLK 355 (403)
Q Consensus 332 ~~~~~~~f~~l~~~~p~l~~ell~ 355 (403)
+++..+.|..|++. -+++++.
T Consensus 179 ~lL~~~sFn~LSk~---sL~e~l~ 199 (620)
T KOG4350|consen 179 QLLEDPSFNRLSKD---SLKELLA 199 (620)
T ss_pred hhhcCcchhhhhHH---HHHHHHh
Confidence 99999999999875 4455544
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=223.85 Aligned_cols=161 Identities=29% Similarity=0.463 Sum_probs=154.8
Q ss_pred CCchHHHHHHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCC
Q 015666 170 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDK 249 (403)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~ 249 (403)
...+.+.|+.+++.+.++||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.|.++++.+++.+|+|+||+.
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCC
Q 015666 250 FPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPAN 329 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 329 (403)
+. ++.+++.+||.+|+.||++.+.+.|.+||...+.++||+.+..+|+.|++..|...+..|+. .|
T Consensus 100 i~------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~~ 165 (571)
T KOG4441|consen 100 LE------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--QH 165 (571)
T ss_pred EE------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HH
Confidence 98 56799999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHcccchhHHHh
Q 015666 330 LGVIMQSEGFKHLEE 344 (403)
Q Consensus 330 ~~~~~~~~~f~~l~~ 344 (403)
|.++..+++|..|+.
T Consensus 166 F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 166 FAEVSKTEEFLLLSL 180 (571)
T ss_pred HHHHhccHHhhCCCH
Confidence 999999999999774
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=2.4e-25 Score=222.39 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=139.8
Q ss_pred hHHHHHHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEE--cCCCHHHHHHHHHHHhcCCC
Q 015666 173 MGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV--KDVEPSIFKAMLLFIYTDKF 250 (403)
Q Consensus 173 l~~~l~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l--~d~~~~~f~~~L~~iYt~~~ 250 (403)
..+++-.+..++.++||++.+| ++|+|||.|||+.||||++||.++|+|+.. +|.+ .++++++++.+|+|+||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 4566777778899999887655 599999999999999999999999999954 5665 48999999999999999999
Q ss_pred CCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCCh
Q 015666 251 PDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANL 330 (403)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 330 (403)
. ++.+++.+||.+|++||++.+++.|+++|.+.++++||+.++.+|+.|++..|++.+.+||. +||
T Consensus 87 ~------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF 152 (480)
T PHA02790 87 Y------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHF 152 (480)
T ss_pred E------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhH
Confidence 8 56689999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHcc--cchhHH
Q 015666 331 GVIMQS--EGFKHL 342 (403)
Q Consensus 331 ~~~~~~--~~f~~l 342 (403)
.++.++ ++|..|
T Consensus 153 ~~v~~~~~~ef~~L 166 (480)
T PHA02790 153 LELEDDIIDNFDYL 166 (480)
T ss_pred HHHhcccchhhhhC
Confidence 999986 778553
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=224.04 Aligned_cols=144 Identities=22% Similarity=0.351 Sum_probs=137.2
Q ss_pred cCCCCceEEEe--CCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCC
Q 015666 183 SEIGCDIVFEV--GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTT 260 (403)
Q Consensus 183 ~~~~~Dv~~~v--~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 260 (403)
++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. +.+|.|.+ ++++|+.+|+|+|||.+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~--------- 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKIN--------- 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceE---------
Confidence 77899999998 9999999999999999999999999888 57799999 999999999999999987
Q ss_pred CccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchh
Q 015666 261 SMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFK 340 (403)
Q Consensus 261 ~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~ 340 (403)
++.+++.+||.+|++|+++.|+..|+++|...++.+||+.++.+|..|++..|++.|.+||. .||.++.++++|.
T Consensus 73 ---i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~ 147 (534)
T PHA03098 73 ---ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYNDPDFI 147 (534)
T ss_pred ---EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcCchhh
Confidence 55689999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred HHHh
Q 015666 341 HLEE 344 (403)
Q Consensus 341 ~l~~ 344 (403)
+|+.
T Consensus 148 ~l~~ 151 (534)
T PHA03098 148 YLSK 151 (534)
T ss_pred cCCH
Confidence 8864
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.87 E-value=1e-21 Score=163.46 Aligned_cols=130 Identities=27% Similarity=0.440 Sum_probs=101.5
Q ss_pred eEEEEEEcCccccc-cCCCCC--eeecccc--eecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceEEEE
Q 015666 19 GSHQFTVKGYSLAK-GMGPGK--CLSSDVF--TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (403)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~--~~~S~~F--~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~~~~ 87 (403)
|.++|+|.+|+.++ .++.|+ ++.|+.| .++||+|+|++||||.+.+.++ ||||||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGT-HLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCccccccCcceEEEE
Confidence 57999999999886 467888 8999999 8999999999999999877777 99999999865 79999999
Q ss_pred EEEEeeCCCCCccceecccccccccCCcccccc----Ccc-CccceeeccccccC--cccCCCcEEEEEEee
Q 015666 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYR----GSM-GYKRFFKRTSLETS--DYIKDDCLLINCTVG 152 (403)
Q Consensus 88 ~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~-G~~~fi~~~~L~~~--~~l~dd~l~i~~~v~ 152 (403)
+|.|+||++.+.+..... ... .....|... +.. |+.+||++++|+.+ +|+.||++.|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~~--~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETF-KAD--PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceee-ecC--CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999987544211111 000 001223211 212 99999999999865 999999999999873
No 7
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.87 E-value=2.1e-21 Score=161.82 Aligned_cols=131 Identities=26% Similarity=0.540 Sum_probs=103.4
Q ss_pred eeeeEEEEEEcCccccccCCCCCeeecccceecCe---eEEEEEEcCCCCCCCCCceEEEEEEecc-CCcceEEEEEEEE
Q 015666 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTL 91 (403)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~---~W~l~~~p~g~~~~~~~~~lslyL~~~~-~~~~v~~~~~~~l 91 (403)
+.+.+|.|+|+||+.+++ ..|+++.|+.|.+||+ +|+|++||+|+..++.+ |+||||.+.. ..+++.|+|+|.|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~-~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCC-eEEEEEEEccCCCCcEEEEEEEEE
Confidence 567899999999998776 5788999999999995 99999999998766666 9999999864 4568999999999
Q ss_pred eeCCCCCccceecccccccccCCccccccCccCccceeeccccc--cCcccCCCcEEEEEEeeeec
Q 015666 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 155 (403)
Q Consensus 92 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~~~l~dd~l~i~~~v~i~~ 155 (403)
+|++|......... ..+.|.....+||.+||++++|. .++||.||+++|+|+|.|..
T Consensus 80 ~n~~~~~~~~~~~~-------~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAMESQ-------RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeeccc-------CcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99987542211100 11233222222999999999995 57899999999999999864
No 8
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.86 E-value=3.4e-21 Score=166.07 Aligned_cols=134 Identities=27% Similarity=0.411 Sum_probs=103.5
Q ss_pred eeeeEEEEEEcCccccc-cCCCCC--eeecccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceE
Q 015666 16 TVNGSHQFTVKGYSLAK-GMGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (403)
Q Consensus 16 ~~~~~~~w~I~~fs~~~-~~~~~~--~~~S~~F~~~--g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~ 84 (403)
...|+|+|+|.+|+.++ .++.|+ ++.||+|.+| ||.|+|++||||.+.+.++ |||+||.+..+ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~-~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCCcee
Confidence 34699999999999876 467777 8999999999 9999999999999877777 99999999854 69999
Q ss_pred EEEEEEEeeCCCCCccceecccccccccCCcccc-cc---Ccc-CccceeeccccccCcccCCCcEEEEEEeee
Q 015666 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK-YR---GSM-GYKRFFKRTSLETSDYIKDDCLLINCTVGV 153 (403)
Q Consensus 85 ~~~~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~-~~---~~~-G~~~fi~~~~L~~~~~l~dd~l~i~~~v~i 153 (403)
++++|.|+||++........ +..... ...|. .. +.. |++.||++++|+.++|+.||++.|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~-~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDA-FKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCccccccce-eccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 99999999998632221111 000000 01222 11 112 999999999999899999999999998863
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.85 E-value=5.1e-21 Score=161.69 Aligned_cols=132 Identities=23% Similarity=0.375 Sum_probs=100.2
Q ss_pred eEEEEEEcCccccccC--C-CCCeeecccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceEEEE
Q 015666 19 GSHQFTVKGYSLAKGM--G-PGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~~--~-~~~~~~S~~F~~~--g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~~~~ 87 (403)
|.|+|+|.+|+.++++ . .++.+.|+.|.+| ||.|+|++||||...+..+ |||+||++..+ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~-~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGS-HLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCC-EEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999988763 2 4689999999999 9999999999998877776 99999999853 79999999
Q ss_pred EEEEeeCCCCCccceeccccccccc--CCcccc--------ccCcc-CccceeeccccccCcccCCCcEEEEEEee
Q 015666 88 ELTLVDQSGKGKHKVHSHFDRALES--GPYTLK--------YRGSM-GYKRFFKRTSLETSDYIKDDCLLINCTVG 152 (403)
Q Consensus 88 ~~~ll~~~g~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~-G~~~fi~~~~L~~~~~l~dd~l~i~~~v~ 152 (403)
+|+|+||.+...... ......+.. ....|. ..... |+..||++++|++++||.||+++|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~-~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKP-QHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccC-cceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 999999987411100 000011100 011222 12222 99999999999989999999999999874
No 10
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.85 E-value=1.1e-20 Score=156.87 Aligned_cols=124 Identities=15% Similarity=0.231 Sum_probs=96.7
Q ss_pred eeEEEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCC--CCCceEEEEEEecc----CCcceEEEEEEEE
Q 015666 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE--DGALYVSVFIALAS----EGTDVRALFELTL 91 (403)
Q Consensus 18 ~~~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~--~~~~~lslyL~~~~----~~~~v~~~~~~~l 91 (403)
.++|.|+|.||+.+ ++.+.||.|.+||++|+|.+||+|+... ..+ ++||||.|.. ..|.+.|+|+++|
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~-~lsvyL~~~~~~~~~~w~i~a~~~~~l 75 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQK-SVGFFLQCNAESDSTSWSCHAQAVLRI 75 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCC-eEEEEEeeCCcCCCCCCeEEEEEEEEE
Confidence 46899999999987 4679999999999999999999996542 234 9999999973 3689999999999
Q ss_pred eeCCCCCccceecccccccccCCccccccCcc-Cccceeeccccc--cCcccCCCcEEEEEEeeeec
Q 015666 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSM-GYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 155 (403)
Q Consensus 92 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~fi~~~~L~--~~~~l~dd~l~i~~~v~i~~ 155 (403)
+|+++...... .. ..+.|...... |+.+||+|++|. .++||.||+++|+|+|.|..
T Consensus 76 ~~~~~~~~~~~-~~-------~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 76 INYKDDEPSFS-RR-------ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred EcCCCCcccEE-Ee-------eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 99985322111 11 01223222233 999999999995 58999999999999998865
No 11
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.85 E-value=7.4e-21 Score=157.47 Aligned_cols=129 Identities=22% Similarity=0.416 Sum_probs=96.9
Q ss_pred eEEEEEEcCccccc-cCCCC--Ceeecccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceEEEE
Q 015666 19 GSHQFTVKGYSLAK-GMGPG--KCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (403)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~--~~~~S~~F~~~--g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~~~~ 87 (403)
|.++|+|.||+++. +...| ..+.||.|..+ ||.|+|++||||.+.+.++ |||+||.+..+ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGT-HISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCcceEEEE
Confidence 57999999998543 33334 37999999876 9999999999999877777 99999999854 69999999
Q ss_pred EEEEeeCCCCCccceecccccccccCCcccc----ccCcc-CccceeeccccccC--cccCCCcEEEEEEee
Q 015666 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSM-GYKRFFKRTSLETS--DYIKDDCLLINCTVG 152 (403)
Q Consensus 88 ~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~-G~~~fi~~~~L~~~--~~l~dd~l~i~~~v~ 152 (403)
+|.|+||.+.+.. .... ..... ...|. ..+.. |+.+||++++|+.+ +||.||++.|+|+|.
T Consensus 80 tfsLlDq~~~~~~-~~~~-~~~~~--~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHV-IDAF-RPDLS--SASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCC-cEee-cCCcc--cccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999999864331 1111 00000 12232 11212 99999999999975 999999999999874
No 12
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.85 E-value=5.6e-21 Score=160.60 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=98.3
Q ss_pred eEEEEEEcCccccc-cCCCCCe--eeccccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceEEEE
Q 015666 19 GSHQFTVKGYSLAK-GMGPGKC--LSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (403)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~~--~~S~~F~~--~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~~~~ 87 (403)
|+|+|+|.+|+.++ .+..|+. +.||.|.+ |||.|+|++||||...+..+ |||+||.+..+ .|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~-~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPN-YISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCcccCCccccee
Confidence 57999999999754 4677885 88999985 79999999999998877666 99999998632 58999999
Q ss_pred EEEEeeCCCCCccceecccccccccCCccccc-----cCcc-CccceeeccccccCcccCCCcEEEEEEee
Q 015666 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKY-----RGSM-GYKRFFKRTSLETSDYIKDDCLLINCTVG 152 (403)
Q Consensus 88 ~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-G~~~fi~~~~L~~~~~l~dd~l~i~~~v~ 152 (403)
+|.|+||.|......... ... .....|.. ++.. |+.+||++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~-~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETM-MSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEE-EcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 999999987433211000 000 00112221 1222 99999999999988999999999999974
No 13
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.84 E-value=7.7e-21 Score=160.43 Aligned_cols=131 Identities=28% Similarity=0.431 Sum_probs=98.0
Q ss_pred eEEEEEEcCcccccc---CCCCCeeecccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecc------CCcceEEEE
Q 015666 19 GSHQFTVKGYSLAKG---MGPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALF 87 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~---~~~~~~~~S~~F~~~--g~~W~l~~~p~g~~~~~~~~~lslyL~~~~------~~~~v~~~~ 87 (403)
|+|+|+|++|+.+++ ...++.++||.|.+| ||.|+|++||||+..+.++ ||||||++.. ..|++.+++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~-~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGT-HLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCccccCCccceE
Confidence 579999999998865 256789999999999 9999999999998766665 9999999852 258999999
Q ss_pred EEEEeeCCCCCccce-ecccccccccCCcccc-----ccCcc-CccceeeccccccCcccCCCcEEEEEEee
Q 015666 88 ELTLVDQSGKGKHKV-HSHFDRALESGPYTLK-----YRGSM-GYKRFFKRTSLETSDYIKDDCLLINCTVG 152 (403)
Q Consensus 88 ~~~ll~~~g~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~-G~~~fi~~~~L~~~~~l~dd~l~i~~~v~ 152 (403)
+|.|+|+.+....+. ...+.... ....|. ..... ||.+||++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999987411110 00000000 011121 11222 99999999999978999999999999874
No 14
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.84 E-value=2.3e-20 Score=154.21 Aligned_cols=123 Identities=27% Similarity=0.488 Sum_probs=96.4
Q ss_pred eEEEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC-CcceEEEEEEEEeeCCCC
Q 015666 19 GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSGK 97 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~-~~~v~~~~~~~ll~~~g~ 97 (403)
+++.|+|.|||.+++ .|+++.|+.|.+||++|+|.+||+|+..+.++ |||+||.+... .|.+.++++++|+|+.+.
T Consensus 5 ~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~-~lSl~L~l~~~~~~~~~~~~~l~llnq~~~ 81 (132)
T cd03773 5 DSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEVRGN-FLSVFLELCSGLGEASKYEYRVEMVHQANP 81 (132)
T ss_pred cccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCCCCC-EEEEEEEeecCCCCceeEEEEEEEEcCCCC
Confidence 568999999998764 57899999999999999999999998766666 99999988753 577889999999999532
Q ss_pred CccceecccccccccCCccccccCccCccceeeccccccCcccCC--CcEEEEEEee
Q 015666 98 GKHKVHSHFDRALESGPYTLKYRGSMGYKRFFKRTSLETSDYIKD--DCLLINCTVG 152 (403)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~~~l~d--d~l~i~~~v~ 152 (403)
..... .. ..+.|.....+||.+||++++|+++|||.| |+|+|+|.|.
T Consensus 82 ~~~~~-~~-------~~~~f~~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 82 TKNIK-RE-------FASDFEVGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred ccceE-Ee-------ccccccCCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 22111 11 011222212239999999999988899999 9999999885
No 15
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.83 E-value=4.7e-20 Score=155.43 Aligned_cols=130 Identities=24% Similarity=0.445 Sum_probs=97.7
Q ss_pred eEEEEEEcCccccc-cCCCCCeeecccc-eecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC------Ccc-eEEEEEE
Q 015666 19 GSHQFTVKGYSLAK-GMGPGKCLSSDVF-TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTD-VRALFEL 89 (403)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~~~~S~~F-~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~-v~~~~~~ 89 (403)
..|+|+|.||+.++ +++.|+.+.||.| .+|||.|+|++||||++. .++ ||||||++..+ .|+ +.+++++
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~-~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPG-YTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCC-cceEEEEEecCCccccccCcceeEEEEE
Confidence 57999999999985 6788999999999 899999999999999987 666 99999999733 478 6899999
Q ss_pred EEeeCCCCCccceecccccccccCC---------cccc-----------------ccCcc-CccceeeccccccCcccCC
Q 015666 90 TLVDQSGKGKHKVHSHFDRALESGP---------YTLK-----------------YRGSM-GYKRFFKRTSLETSDYIKD 142 (403)
Q Consensus 90 ~ll~~~g~~~~~~~~~~~~~~~~~~---------~~~~-----------------~~~~~-G~~~fi~~~~L~~~~~l~d 142 (403)
+|+||..+.....+. ..++...+ +.|. +++.+ ||+.||++++|+..+||.|
T Consensus 80 ~LlDQ~~~~~~r~~~--~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSN--QRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKG 157 (167)
T ss_pred EEECCCCcccccCcc--eEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcC
Confidence 999997322111111 01111110 0010 12234 9999999999998889999
Q ss_pred CcEEEEEEee
Q 015666 143 DCLLINCTVG 152 (403)
Q Consensus 143 d~l~i~~~v~ 152 (403)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999998764
No 16
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=1.8e-19 Score=169.03 Aligned_cols=177 Identities=30% Similarity=0.450 Sum_probs=156.4
Q ss_pred ccCCCCCchHHHHHHHhhcCCCCceEEEeCC-----ceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHH
Q 015666 165 SIPVPPSDMGQGLKDLLESEIGCDIVFEVGD-----ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFK 239 (403)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~Dv~~~v~~-----~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~ 239 (403)
..+.+.+++...+..++.++..+|+.|+|++ +.++|||.+|+..|.+|.+||+|++.+....+|.++|+++.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3455667788888889999999999999974 69999999999999999999999999998889999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHH-HHhCCChHHHH
Q 015666 240 AMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLAL-AEQHQCPQLKA 318 (403)
Q Consensus 240 ~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~-A~~~~~~~L~~ 318 (403)
.+|+|||++... +..++++.+|.+|++|.++.|.+.|.++|...+...|+...+-- |..++-+.|..
T Consensus 173 ~~L~flYsdev~------------~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~ 240 (521)
T KOG2075|consen 173 AFLRFLYSDEVK------------LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLIS 240 (521)
T ss_pred HHHHHHhcchhh------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHH
Confidence 999999998887 44689999999999999999999999999998888877655554 99999999999
Q ss_pred HHHHHhcCCCChHHHHcccchhHHHhhCcHHHHHHHHH
Q 015666 319 ICLKFAATPANLGVIMQSEGFKHLEESCPSLLSELLKT 356 (403)
Q Consensus 319 ~~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell~~ 356 (403)
.|++-|. .+++..+..++|.++... .+...+++++
T Consensus 241 ~c~e~id--~~~~~al~~EGf~did~~-~dt~~evl~r 275 (521)
T KOG2075|consen 241 ICLEVID--KSFEDALTPEGFCDIDST-RDTYEEVLRR 275 (521)
T ss_pred HHHHHhh--hHHHhhhCccceeehhhH-HHHHHHHHhh
Confidence 9999999 999999999999998754 3445555543
No 17
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.82 E-value=1.6e-19 Score=149.22 Aligned_cols=117 Identities=23% Similarity=0.417 Sum_probs=90.9
Q ss_pred EEEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecc---------CCcceEEEEEEE
Q 015666 20 SHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS---------EGTDVRALFELT 90 (403)
Q Consensus 20 ~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~---------~~~~v~~~~~~~ 90 (403)
+|.|+|+||+.+ ++.+.|+.|.+||++|+|.+||+|+.. .+ +|||||.+.+ .+|.+.|+|++.
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~-~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ--TG-GVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC--CC-eEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999994 468999999999999999999999754 44 9999999852 367899999999
Q ss_pred EeeCCCCCccceecccccccccCCccccccCcc-Cccceeeccccc------cCcccCCCcEEEEEEee
Q 015666 91 LVDQSGKGKHKVHSHFDRALESGPYTLKYRGSM-GYKRFFKRTSLE------TSDYIKDDCLLINCTVG 152 (403)
Q Consensus 91 ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~fi~~~~L~------~~~~l~dd~l~i~~~v~ 152 (403)
|+|+.+....... . ..+.|...... ||.+||++++|+ ++|||.||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~~-~-------~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN-V-------AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc-c-------ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999743321111 1 12333322233 999999999997 47999999999998763
No 18
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.78 E-value=5.1e-19 Score=141.50 Aligned_cols=108 Identities=38% Similarity=0.565 Sum_probs=93.7
Q ss_pred HHHHhhcCCCCceEEEeC-CceeeeehhhhhhcCHHHHHHhccc-ccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcc
Q 015666 177 LKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGL-VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVY 254 (403)
Q Consensus 177 l~~~~~~~~~~Dv~~~v~-~~~~~aHk~iLa~~S~~F~~~f~~~-~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~ 254 (403)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.||.+. +.+....+|.++++++++|+.+++|+|++.+...
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~- 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN- 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-
Confidence 467888999999999999 8999999999999999999999987 5666556799999999999999999999988743
Q ss_pred cccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHcc
Q 015666 255 EITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
+.+++.+++.+|++|+++.|+..|+.+|.+.
T Consensus 80 ----------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 ----------SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -----------TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 1478999999999999999999999998753
No 19
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=145.39 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=139.6
Q ss_pred CCchHHHHHHHhhcCCCCceEEEeCC---ceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHh
Q 015666 170 PSDMGQGLKDLLESEIGCDIVFEVGD---ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 246 (403)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~Dv~~~v~~---~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iY 246 (403)
++.+..-...+++.+.++|++|.++| +.++|||.+||+||.+.+-.-.| .| ...+..+.|+++++|..+++|||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~--de-kse~~~~dDad~Ea~~t~iRWIY 126 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGG--DE-KSEELDLDDADFEAFHTAIRWIY 126 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCC--Cc-chhhhcccccCHHHHHHhheeee
Confidence 35667777889999999999999985 78999999999999988633211 22 23567889999999999999999
Q ss_pred cCCCCCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcC
Q 015666 247 TDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAAT 326 (403)
Q Consensus 247 t~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 326 (403)
|+++.... ..+.+.++.++|++|+++.|+..|+.-+...+..+||+.++++|+..+...|...|...|+
T Consensus 127 TDEidfk~----------dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA- 195 (280)
T KOG4591|consen 127 TDEIDFKE----------DDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA- 195 (280)
T ss_pred cccccccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 99988653 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHcccchhHHHhhCcHHHHHHHH
Q 015666 327 PANLGVIMQSEGFKHLEESCPSLLSELLK 355 (403)
Q Consensus 327 ~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 355 (403)
.++..+-+. +|.+|+ |.++..++.
T Consensus 196 -~~W~dL~~a-~FaqMs---~aLLYklId 219 (280)
T KOG4591|consen 196 -GAWDDLGKA-DFAQMS---AALLYKLID 219 (280)
T ss_pred -hhccccChH-HHHhcc---HHHHHHHHc
Confidence 887777664 355544 556655544
No 20
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.75 E-value=8.6e-18 Score=140.60 Aligned_cols=134 Identities=20% Similarity=0.392 Sum_probs=97.1
Q ss_pred eeeeEEEEEEcCcccccc-CCCC--Ceeecccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecc------CCcceE
Q 015666 16 TVNGSHQFTVKGYSLAKG-MGPG--KCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVR 84 (403)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~-~~~~--~~~~S~~F~~~--g~~W~l~~~p~g~~~~~~~~~lslyL~~~~------~~~~v~ 84 (403)
...|.++|+|.||+.+.+ ...| ..+.||.|..+ |++|+|++||||++...+. |+|||+++.. -.|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~-~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCC-EEEEEEEEecCCcCcccCCcee
Confidence 456999999999997654 2233 47899999764 8999999999999888877 9999999873 369999
Q ss_pred EEEEEEEeeCCCCCccceecccccccccCCcccccc--Ccc-Cccceeecccccc-CcccCCCcEEEEEEee
Q 015666 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYR--GSM-GYKRFFKRTSLET-SDYIKDDCLLINCTVG 152 (403)
Q Consensus 85 ~~~~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-G~~~fi~~~~L~~-~~~l~dd~l~i~~~v~ 152 (403)
.++++.|+||++ +.+.... +........+..... ... |++.|++.++|+. .+|+.||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~-r~hi~~~-~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNN-REHVIDA-FRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCC-CCcceeE-EEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 999999999974 2222211 111110000100111 112 9999999999975 7999999999999873
No 21
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.74 E-value=5e-17 Score=132.51 Aligned_cols=119 Identities=34% Similarity=0.611 Sum_probs=91.7
Q ss_pred eEEEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC-----CcceEEEEEEEEee
Q 015666 19 GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-----GTDVRALFELTLVD 93 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~-----~~~v~~~~~~~ll~ 93 (403)
++|+|+|.+|+. ..++.+.||.|.++|+.|+|.+||+|... ..+ ++||||.|... .|.+.++++|.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~-~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGD-YLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCC-EEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 369999999988 45778999999999999999999999765 344 99999999743 59999999999999
Q ss_pred CCCCCccceecccccccccCCccc-cccCcc-CccceeeccccccCcccCCCcEEEEEEee
Q 015666 94 QSGKGKHKVHSHFDRALESGPYTL-KYRGSM-GYKRFFKRTSLETSDYIKDDCLLINCTVG 152 (403)
Q Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~-G~~~fi~~~~L~~~~~l~dd~l~i~~~v~ 152 (403)
+++........ ...+ ...... |+.+||+|++|+...++.||++.|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98322211110 1111 111222 99999999999865558999999999874
No 22
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.71 E-value=6.3e-17 Score=148.65 Aligned_cols=164 Identities=21% Similarity=0.307 Sum_probs=145.5
Q ss_pred HHHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEc----CCCHHHHHHHHHHHhcCCCCC
Q 015666 177 LKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK----DVEPSIFKAMLLFIYTDKFPD 252 (403)
Q Consensus 177 l~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~----d~~~~~f~~~L~~iYt~~~~~ 252 (403)
+..++.+++.+||++.+=|.+.+.||..|. +|+||.+||.|.++|++.+.|.++ .++..++...+.-+|.+++.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve- 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE- 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-
Confidence 567788999999999999999999999998 999999999999999999987663 58999999999999999998
Q ss_pred cccccCCCCccccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHH
Q 015666 253 VYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGV 332 (403)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 332 (403)
|..+.+..+|++|..+++++|.+.|.+.+++.+++++++..+..|.+|+...+++.|++++. .|+-.
T Consensus 138 -----------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 138 -----------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 55689999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHcccchhHHHhhCcHHHHHHHHHHhcCCC
Q 015666 333 IMQSEGFKHLEESCPSLLSELLKTLASGDD 362 (403)
Q Consensus 333 ~~~~~~f~~l~~~~p~l~~ell~~~~~~~~ 362 (403)
+....-+.+++ .+|+.+++.++.
T Consensus 205 i~~~q~l~ei~-------~~Lm~~ll~Spn 227 (488)
T KOG4682|consen 205 IQNVQLLKEIS-------INLMKQLLGSPN 227 (488)
T ss_pred hhhHHHHHhcC-------HHHHHHHhCCCC
Confidence 87777444443 445555555544
No 23
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.67 E-value=3e-16 Score=126.94 Aligned_cols=113 Identities=31% Similarity=0.536 Sum_probs=87.1
Q ss_pred EcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecc------CCcceEEEEEEEEeeCCCCC
Q 015666 25 VKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALFELTLVDQSGKG 98 (403)
Q Consensus 25 I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~------~~~~v~~~~~~~ll~~~g~~ 98 (403)
|.||+.++ ..+..+.|+.|.++|++|+|.+||+|+ ++ ++++||.|.. ..|++.+++++.+++++|..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~-~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN----GK-YLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES----TT-EEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC----cC-cEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999987 334455669999999999999999996 34 9999999983 38999999999999998765
Q ss_pred ccceecccccccccCCccccccCccCccceeeccccccCcccCCCcEEEEEEeee
Q 015666 99 KHKVHSHFDRALESGPYTLKYRGSMGYKRFFKRTSLETSDYIKDDCLLINCTVGV 153 (403)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~~~l~dd~l~i~~~v~i 153 (403)
...... ...|......||.+||+|++|....|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFNNPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEECTTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEeeecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 222111 1233222222999999999998656899999999999986
No 24
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.65 E-value=2.5e-16 Score=155.76 Aligned_cols=167 Identities=21% Similarity=0.325 Sum_probs=135.6
Q ss_pred CCCceEEEe-CCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCcc
Q 015666 185 IGCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 263 (403)
Q Consensus 185 ~~~Dv~~~v-~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 263 (403)
..-|+.|.. +|+.+.|||++|++|+.||..||..-|.|+..-.+.+..+..+.+..+|+|+|+..-.......
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~------ 782 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDL------ 782 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhcc------
Confidence 344666666 6677999999999999999999999999998866777777899999999999954322111100
Q ss_pred ccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHH
Q 015666 264 TTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLE 343 (403)
Q Consensus 264 ~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~ 343 (403)
-..+.+.++|.+||.|.+..|+..|+..|.+.++..++..++++|..|++..|+..|++||+ .|+..++.-....++.
T Consensus 783 ~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Learsi~~~d 860 (1267)
T KOG0783|consen 783 KESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLEARSISEWD 860 (1267)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHhccHhhhc
Confidence 12467889999999999999999999999999999999999999999999999999999999 9999998876655555
Q ss_pred hhCcHHHHHHHHHHhc
Q 015666 344 ESCPSLLSELLKTLAS 359 (403)
Q Consensus 344 ~~~p~l~~ell~~~~~ 359 (403)
..+.--+.+..++++.
T Consensus 861 g~~LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 861 GFHLKKLAQRYRKMLS 876 (1267)
T ss_pred chHHHHHHHHHHHHhh
Confidence 4433344555666665
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=4.9e-16 Score=118.53 Aligned_cols=90 Identities=40% Similarity=0.625 Sum_probs=83.0
Q ss_pred ceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCccccHH
Q 015666 188 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 267 (403)
Q Consensus 188 Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 267 (403)
|++|.++|+.|++||.+|+++|+||++||.+.+.+.....+.++++++++|+.+|+|+|++.+... ..
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~------------~~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLP------------EE 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecC------------HH
Confidence 789999999999999999999999999999888877788899999999999999999999988743 46
Q ss_pred HHHHHHHHhcccChhhHHHHHH
Q 015666 268 MVQHLLAAADLYNVDRLKLLCE 289 (403)
Q Consensus 268 ~~~~ll~~Ad~~~~~~L~~~c~ 289 (403)
++.+++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999884
No 26
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.60 E-value=4.4e-15 Score=123.65 Aligned_cols=133 Identities=23% Similarity=0.404 Sum_probs=93.9
Q ss_pred eEEEEEEcCcccccc-CCCCCeeecccceec-CeeEEEEEEcCCCCC-CCCCceEEEEEEeccC------Ccce-EEEEE
Q 015666 19 GSHQFTVKGYSLAKG-MGPGKCLSSDVFTVG-GYDWAIYFYPDGKNP-EDGALYVSVFIALASE------GTDV-RALFE 88 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~~~S~~F~~~-g~~W~l~~~p~g~~~-~~~~~~lslyL~~~~~------~~~v-~~~~~ 88 (403)
..++|+|.||+++.+ ...+..++||.|... ||..+|++|+||++. ..++ |+|||+++..+ .|++ .-+++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~-~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGN-YTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCC-EEEEEEEEecccCCCcccCCCcCCEEE
Confidence 358999999987543 346778999999885 999999999999874 4455 99999999844 5995 56899
Q ss_pred EEEeeCCCCCccceec--cccccc--cc----CCcccc--------------ccCcc-CccceeeccccccCcccCCCcE
Q 015666 89 LTLVDQSGKGKHKVHS--HFDRAL--ES----GPYTLK--------------YRGSM-GYKRFFKRTSLETSDYIKDDCL 145 (403)
Q Consensus 89 ~~ll~~~g~~~~~~~~--~~~~~~--~~----~~~~~~--------------~~~~~-G~~~fi~~~~L~~~~~l~dd~l 145 (403)
+.|+||+.+.....+. .+.... .+ +...|. .++.+ ||+.||+++.|+..+|+.||++
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl 160 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL 160 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence 9999997422111100 000000 00 001121 12233 9999999999999999999999
Q ss_pred EEEEEee
Q 015666 146 LINCTVG 152 (403)
Q Consensus 146 ~i~~~v~ 152 (403)
.|..+++
T Consensus 161 fI~~~~~ 167 (167)
T cd03783 161 IIFVDFE 167 (167)
T ss_pred EEEEecC
Confidence 9987763
No 27
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.59 E-value=8.3e-15 Score=121.23 Aligned_cols=131 Identities=21% Similarity=0.357 Sum_probs=95.3
Q ss_pred eEEEEEEcCcccccc-CCCCCeeeccccee-cCeeEEEEEEcCCCCCCCCCceEEEEEEeccC------CcceE-EEEEE
Q 015666 19 GSHQFTVKGYSLAKG-MGPGKCLSSDVFTV-GGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR-ALFEL 89 (403)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~~~S~~F~~-~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~------~~~v~-~~~~~ 89 (403)
..++|+|.||+++.+ .+.+..++||+|.. .||+.++++|+||.+.. ++ |+|||+++..+ .|++. -++++
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~-~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PG-NLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CC-EEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 468999999997554 35677899999965 49999999999999865 55 99999999844 59999 89999
Q ss_pred EEeeCCCC---Cccceec-ccccccccC---Ccccc-----------------ccCcc-CccceeeccccccCcccCCCc
Q 015666 90 TLVDQSGK---GKHKVHS-HFDRALESG---PYTLK-----------------YRGSM-GYKRFFKRTSLETSDYIKDDC 144 (403)
Q Consensus 90 ~ll~~~g~---~~~~~~~-~~~~~~~~~---~~~~~-----------------~~~~~-G~~~fi~~~~L~~~~~l~dd~ 144 (403)
.|+||+.+ +.+.... .+.....+. .+... +++.+ |++.||+++.|+...|+.||.
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ 159 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDD 159 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCe
Confidence 99999742 2221110 111111111 12101 11344 999999999999899999999
Q ss_pred EEEEEEe
Q 015666 145 LLINCTV 151 (403)
Q Consensus 145 l~i~~~v 151 (403)
+.|-.++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9987765
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.38 E-value=2.4e-12 Score=99.49 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=58.9
Q ss_pred EEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC-----CcceEEEEEEEEeeCC
Q 015666 21 HQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-----GTDVRALFELTLVDQS 95 (403)
Q Consensus 21 ~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~-----~~~v~~~~~~~ll~~~ 95 (403)
+.|+|.||+.+ +.++.+.||.|.++|++|+|.+||++ +|+|+||.|... +|++.|++++.|+|++
T Consensus 2 ~~~~~~~~~~~---~~~~~~~S~~f~~~g~~W~i~~~p~~-------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRL---EEGESYFSPSEEHFNIPWRLKIYRKN-------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhc---ccCceEeCChhEEcCceeEEEEEEcC-------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 57999999875 45788999999999999999999993 299999999622 6899999999999999
Q ss_pred CCC
Q 015666 96 GKG 98 (403)
Q Consensus 96 g~~ 98 (403)
|+.
T Consensus 72 ~~~ 74 (95)
T smart00061 72 GKS 74 (95)
T ss_pred CCE
Confidence 754
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=114.42 Aligned_cols=234 Identities=23% Similarity=0.282 Sum_probs=172.1
Q ss_pred EEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC-CcceEEEEEEEEeeCCCCCc-c
Q 015666 23 FTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 100 (403)
Q Consensus 23 w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~-~~~v~~~~~~~ll~~~g~~~-~ 100 (403)
|.|.+|+... ..++|..|..+|..|++.+||+|+ +.++|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 8898887654 567899999999999999999995 68888876532 89999999999999975422 1
Q ss_pred ceecccccccccCCcccccc--C-ccCccceeeccccccCcccCCCcEEEEEEeeeeccccCCCCCcccCCCCCchHHHH
Q 015666 101 KVHSHFDRALESGPYTLKYR--G-SMGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGL 177 (403)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--~-~~G~~~fi~~~~L~~~~~l~dd~l~i~~~v~i~~~~~~~~~~~~~~~~~~~l~~~l 177 (403)
..... ...+.++ . .+|+..+++...+ ..
T Consensus 76 ~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~------------~~----------------------------- 106 (297)
T KOG1987|consen 76 TVEEG--------FSWFRFNKVLKEWGFGKMLPLTLL------------ID----------------------------- 106 (297)
T ss_pred eeeee--------EEeccccccccccCcccccChHHh------------hc-----------------------------
Confidence 00000 0000000 0 0022111111110 00
Q ss_pred HHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCccccc
Q 015666 178 KDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIT 257 (403)
Q Consensus 178 ~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~ 257 (403)
..+..+.+|+.++++++++|+.|+.....+.....+.+.+.++..++.+..|.|...-...
T Consensus 107 ---------------~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~---- 167 (297)
T KOG1987|consen 107 ---------------CSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSS---- 167 (297)
T ss_pred ---------------ccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHH----
Confidence 0155699999999999999999998877766667778899999999999999998665422
Q ss_pred CCCCccccHHHHH---HHHHHhcccChhhHHHHHHHHHHccCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHH
Q 015666 258 GTTSMCTTTNMVQ---HLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIM 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~---~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~ 334 (403)
..... .++..|++++.+.|+..|...+...+...++...++.+..+++..+...|..++....++..+.
T Consensus 168 --------~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 168 --------VERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred --------HHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 23343 7888999999999999999999999888898899999999999999999999999545877887
Q ss_pred cccchhHHHh
Q 015666 335 QSEGFKHLEE 344 (403)
Q Consensus 335 ~~~~f~~l~~ 344 (403)
...++....+
T Consensus 240 ~~~~~~~~k~ 249 (297)
T KOG1987|consen 240 KKLNEVKEKK 249 (297)
T ss_pred HHHHHHHHhh
Confidence 7666544443
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.3e-08 Score=95.58 Aligned_cols=124 Identities=23% Similarity=0.396 Sum_probs=92.0
Q ss_pred eeeeeEEEEEEcCccccccCCCCCeeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEeccC--------CcceEEE
Q 015666 15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE--------GTDVRAL 86 (403)
Q Consensus 15 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~~--------~~~v~~~ 86 (403)
+...-.+.|+|.+|+.+.+ .+.||.|.+||+.|+|.++|.|+... .+||||...++ .|.|-++
T Consensus 35 e~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~nq~----~~sVyLe~~pqe~e~~~gk~~~ccaq 105 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNNQC----NVSVYLEYEPQELEETGGKYYDCCAQ 105 (1089)
T ss_pred HHhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCCcc----ccEEEEEeccchhhhhcCcchhhhhh
Confidence 3455689999999998764 57999999999999999999996533 48999988732 3889999
Q ss_pred EEEEEeeCCCCCccceecccccccccCCccccccCcc-Cccceeeccccc-----cCcccCCCcEEEEEEeeeec
Q 015666 87 FELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSM-GYKRFFKRTSLE-----TSDYIKDDCLLINCTVGVVR 155 (403)
Q Consensus 87 ~~~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~fi~~~~L~-----~~~~l~dd~l~i~~~v~i~~ 155 (403)
|.|.|-+...+..... +..-+.|..-..+ |+.+|+....|. ...|+.+|.+.|.+.|.|.+
T Consensus 106 Faf~Is~p~~pti~~i--------N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 106 FAFDISNPKYPTIEYI--------NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred eeeecCCCCCCchhhh--------hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEe
Confidence 9999887754221111 1112344433333 999999877774 24578899999999999997
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.67 E-value=4.1e-08 Score=98.50 Aligned_cols=82 Identities=33% Similarity=0.525 Sum_probs=64.5
Q ss_pred CCCchHHHHHHHhhcC----CCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCC------------CcEEEcC
Q 015666 169 PPSDMGQGLKDLLESE----IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL------------DKVVVKD 232 (403)
Q Consensus 169 ~~~~l~~~l~~~~~~~----~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~------------~~i~l~d 232 (403)
+.+.+...|..++... .+.||+|.||+..|+|||.||++||++|+.+|......+.. ..|.+++
T Consensus 537 ~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~ 616 (1267)
T KOG0783|consen 537 ASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED 616 (1267)
T ss_pred ccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeecc
Confidence 4455667777777543 56799999999999999999999999999999643322211 2255789
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 015666 233 VEPSIFKAMLLFIYTDKF 250 (403)
Q Consensus 233 ~~~~~f~~~L~~iYt~~~ 250 (403)
+.+..|+.+|+||||+..
T Consensus 617 i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 617 IPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999999853
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.61 E-value=5.9e-08 Score=85.67 Aligned_cols=134 Identities=22% Similarity=0.350 Sum_probs=94.0
Q ss_pred CchHHHHHHHhhcC-CCCceEEEeC-C--------------ceeeeehhhhhhcCHHHHHHhcccccCCCC---------
Q 015666 171 SDMGQGLKDLLESE-IGCDIVFEVG-D--------------ETFKAHKLILAARSPVFRAQFYGLVGDRNL--------- 225 (403)
Q Consensus 171 ~~l~~~l~~~~~~~-~~~Dv~~~v~-~--------------~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~--------- 225 (403)
..+..++..+++.. .+.|+++.+. | .++.||+.|.++||++|+.++.....++..
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 45777888888755 5556666552 2 369999999999999999999765554432
Q ss_pred CcEEEcC-CCHHHHH-HHHHHHhcCCCCCcccccCCCCc----------------cccHHHHHHHHHHhcccChhhHHHH
Q 015666 226 DKVVVKD-VEPSIFK-AMLLFIYTDKFPDVYEITGTTSM----------------CTTTNMVQHLLAAADLYNVDRLKLL 287 (403)
Q Consensus 226 ~~i~l~d-~~~~~f~-~~L~~iYt~~~~~~~~~~~~~~~----------------~~~~~~~~~ll~~Ad~~~~~~L~~~ 287 (403)
..|.+++ +=|.+|. .||+++||+.+...-....+++. +.....+++|+.+|-.|.++.|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2366654 5566665 68999999987654221111111 3446778899999999999999999
Q ss_pred HHHHHHccCChhhHHHH
Q 015666 288 CESKLCEELNAETVATT 304 (403)
Q Consensus 288 c~~~L~~~l~~~n~~~~ 304 (403)
|+..+......++...+
T Consensus 380 ~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHhhhhhhccccc
Confidence 99999887666654443
No 33
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=85.48 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=109.2
Q ss_pred ceeeeehhhhhhcCHHHHHHhcccccCCCCCc----EEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCccccHHHHHH
Q 015666 196 ETFKAHKLILAARSPVFRAQFYGLVGDRNLDK----VVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQH 271 (403)
Q Consensus 196 ~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~----i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
.+++||..+++ |..||+.||.|++.|++.+. ..++.....+++..|+|+|+++.... .+-+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~------------~~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII------------FDVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch------------HHHHhh
Confidence 46999999998 89999999999999965332 45677788899999999999988743 578899
Q ss_pred HHHHhcccChh---hHHHHHHHHHHcc---CChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHHh
Q 015666 272 LLAAADLYNVD---RLKLLCESKLCEE---LNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEE 344 (403)
Q Consensus 272 ll~~Ad~~~~~---~L~~~c~~~L~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~ 344 (403)
++.+|+++.+. .|+.++...|++. ++.-++.+++.++-......|...+..|+. .|+..+...+++.....
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhcCCchhhHHHH
Confidence 99999998765 2566666666553 445578899999999999999999999999 99999999998887543
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.47 E-value=2.3e-07 Score=81.99 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCCCchHHHHHHHhhcCCCCceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCC--CcEEEcCCCHHHHHHHHHH
Q 015666 167 PVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL--DKVVVKDVEPSIFKAMLLF 244 (403)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~--~~i~l~d~~~~~f~~~L~~ 244 (403)
..+..++.++|...++.....|+-|+.....|+|||++|++|||+|+.+.+........ -.|..-+++.++|++||+|
T Consensus 111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 34566789999999888888999999999999999999999999999988654222222 2366778999999999999
Q ss_pred HhcCCCCCcccccCCCCccccHHHHHHHHHHhcccChh
Q 015666 245 IYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVD 282 (403)
Q Consensus 245 iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~ 282 (403)
+|+++..... ....++.-|-++...|+.+
T Consensus 191 l~tgEfgmEd---------~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMED---------LGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhh---------cCCchHHHHHHHHHhhCCc
Confidence 9999987554 2335566666677777654
No 35
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1.3e-05 Score=70.88 Aligned_cols=96 Identities=22% Similarity=0.361 Sum_probs=80.7
Q ss_pred eEEEeCCceeeeehhhhhhcCHHHHHHhccccc-CCC-CCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCccccH
Q 015666 189 IVFEVGDETFKAHKLILAARSPVFRAQFYGLVG-DRN-LDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTT 266 (403)
Q Consensus 189 v~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~-e~~-~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~ 266 (403)
|.+.|||..|..++.-|.....+|++|+...+. +.. ++.|- -|=+|-.|..+|.||-.|....+ .+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-IDRSpKHF~~ILNfmRdGdv~LP----------e~~ 75 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-IDRSPKHFDTILNFMRDGDVDLP----------ESE 75 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-ecCChhHHHHHHHhhhcccccCc----------cch
Confidence 568899999999999999999999999988763 222 33344 46899999999999998887744 356
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHcc
Q 015666 267 NMVQHLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 267 ~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
..+.+|+.=|.+|.++.|.+.|...|...
T Consensus 76 kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 76 KELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 88999999999999999999999987654
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.79 E-value=2.6e-05 Score=59.94 Aligned_cols=88 Identities=24% Similarity=0.414 Sum_probs=65.2
Q ss_pred eEEEeCCceeeeehhhhh-hcCHHHHHHhccc---ccCCCCCcEEEcCCCHHHHHHHHHHHhc-CCCCCcccccCCCCcc
Q 015666 189 IVFEVGDETFKAHKLILA-ARSPVFRAQFYGL---VGDRNLDKVVVKDVEPSIFKAMLLFIYT-DKFPDVYEITGTTSMC 263 (403)
Q Consensus 189 v~~~v~~~~~~aHk~iLa-~~S~~F~~~f~~~---~~e~~~~~i~l~d~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~~ 263 (403)
|.|.|||+.|.+-+..|. ....+|..|+.+. ........+-| |-+|..|+.+|+|+.+ +.++...
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~--------- 70 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD--------- 70 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T---------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC---------
Confidence 679999999999999999 4456899999864 33344455655 6899999999999999 5665432
Q ss_pred ccHHHHHHHHHHhcccChhhH-HHHH
Q 015666 264 TTTNMVQHLLAAADLYNVDRL-KLLC 288 (403)
Q Consensus 264 ~~~~~~~~ll~~Ad~~~~~~L-~~~c 288 (403)
......++.-|++|+++.+ ++.|
T Consensus 71 --~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 71 --EICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp --TS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred --chhHHHHHHHHHHcCCCccccCCC
Confidence 2467899999999999988 6655
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.78 E-value=0.00016 Score=53.83 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=64.3
Q ss_pred eEEEe-CCceeeeehhhhhhcCHHHHHHhccc--ccCCCCCcEEEcCCCHHHHHHHHHHH-hcCCCCCcccccCCCCccc
Q 015666 189 IVFEV-GDETFKAHKLILAARSPVFRAQFYGL--VGDRNLDKVVVKDVEPSIFKAMLLFI-YTDKFPDVYEITGTTSMCT 264 (403)
Q Consensus 189 v~~~v-~~~~~~aHk~iLa~~S~~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~i-Yt~~~~~~~~~~~~~~~~~ 264 (403)
|.++. +|.+|-+.|. +|.-|+-.++||.|+ +.++..+++.+.|++...++.+.+|+ |.-.+.... ...+..++
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s--~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSS--TEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecccc--ccCCCCCC
Confidence 44554 4466666665 456899999999865 45677788999999999999999998 443333221 11123347
Q ss_pred cHHHHHHHHHHhcccC
Q 015666 265 TTNMVQHLLAAADLYN 280 (403)
Q Consensus 265 ~~~~~~~ll~~Ad~~~ 280 (403)
..+.+++||.+|+++.
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 8899999999999875
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.81 E-value=0.0023 Score=59.19 Aligned_cols=88 Identities=13% Similarity=0.264 Sum_probs=70.1
Q ss_pred ceeeeehhhhhhcCHHHHHHhcccccCC-CCCcEEEc-CCCHHHHHHHHHHHhcCCCCCcccccCCCCccccHHHHHHHH
Q 015666 196 ETFKAHKLILAARSPVFRAQFYGLVGDR-NLDKVVVK-DVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLL 273 (403)
Q Consensus 196 ~~~~aHk~iLa~~S~~F~~~f~~~~~e~-~~~~i~l~-d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll 273 (403)
+.|.+.+.+|...=.||+..+.....++ ...+|+|. .-|..+|+-+++|+....-. ++..|+..||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~------------l~~~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS------------LTPSNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc------------CCcCcEEEeE
Confidence 5899999999999999999996522222 22345554 46788999999999983333 5678999999
Q ss_pred HHhcccChhhHHHHHHHHHHcc
Q 015666 274 AAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 274 ~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
.-|+.++|+.|.+.|..|+...
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998553
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.62 E-value=0.011 Score=46.31 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=59.6
Q ss_pred eEEEe-CCceeeeehhhhhhcCHHHHHHhcccccCC-CCCcEEEcCCCHHHHHHHHHHHhcCCCCCccccc-----CC--
Q 015666 189 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDR-NLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIT-----GT-- 259 (403)
Q Consensus 189 v~~~v-~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~-~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~-----~~-- 259 (403)
++|+. +|.+|.+.+.+.. +|..++.|+.+.-.+. ....|.+++++..+++.+++|++...-....... ..
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 7789999999775 9999999996532222 2257999999999999999999654322111000 00
Q ss_pred CCccccHHHHHHHHHHhcccCh
Q 015666 260 TSMCTTTNMVQHLLAAADLYNV 281 (403)
Q Consensus 260 ~~~~~~~~~~~~ll~~Ad~~~~ 281 (403)
....+..+.+.+|+.+|+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 0001445567777777777653
No 40
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.41 E-value=0.016 Score=40.54 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=44.0
Q ss_pred eEEEe-CCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhc
Q 015666 189 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYT 247 (403)
Q Consensus 189 v~~~v-~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt 247 (403)
|+|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|.|++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 44554 7789999998877 99999999975333322 799999999999999999963
No 41
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.28 E-value=0.014 Score=50.86 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=74.9
Q ss_pred ceEEEeCCceeeeehhhhhhcCH--HHHHHhccc--ccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCcc
Q 015666 188 DIVFEVGDETFKAHKLILAARSP--VFRAQFYGL--VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 263 (403)
Q Consensus 188 Dv~~~v~~~~~~aHk~iLa~~S~--~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 263 (403)
=|.+.++|+.|....-.|..|-| .+.+||.+. +.+.+.+-..+-|-+|..|+.+|.|+..|.++...
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s--------- 80 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLS--------- 80 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecC---------
Confidence 36788999999888877777755 788899754 33334445778889999999999999999998644
Q ss_pred ccHHHHHHHHHHhcccChhhHHHHHHH
Q 015666 264 TTTNMVQHLLAAADLYNVDRLKLLCES 290 (403)
Q Consensus 264 ~~~~~~~~ll~~Ad~~~~~~L~~~c~~ 290 (403)
..++..+|+.|++|++-.|++..++
T Consensus 81 --~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 81 --DIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred --CccHHHHHHHhhHHhhHhHHhHHhh
Confidence 3578999999999999999998887
No 42
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.26 E-value=0.006 Score=47.31 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHHhhCcHHHHHHHH
Q 015666 301 VATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESCPSLLSELLK 355 (403)
Q Consensus 301 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell~ 355 (403)
|+.++.+|..|++..|...|.+||. .||..+..+++|.+|+. +.+..++.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~~L~~---~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA--KNFNEVSKSDEFLELPF---DQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH--HTHHHHTTSHHHHCS-H---HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH--HHHHHHccchhhhcCCH---HHHHHHHh
Confidence 6789999999999999999999999 99999999999998874 35555554
No 43
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.24 E-value=0.014 Score=55.70 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=68.7
Q ss_pred ceEEEeCCceeeeehhhhhhcC--HHHHHHhcccccCCCCC-cEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCccc
Q 015666 188 DIVFEVGDETFKAHKLILAARS--PVFRAQFYGLVGDRNLD-KVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCT 264 (403)
Q Consensus 188 Dv~~~v~~~~~~aHk~iLa~~S--~~F~~~f~~~~~e~~~~-~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~ 264 (403)
-|.|.|+|+.|...+.-|+... .+|.+++.+.+.-.... -..+-|=+|+.|..+|.|+-|++++...
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g---------- 81 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG---------- 81 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc----------
Confidence 4788899999999999998776 59999998776544332 2456688999999999999999999643
Q ss_pred cHHHHHHHHH-HhcccChhhHHH
Q 015666 265 TTNMVQHLLA-AADLYNVDRLKL 286 (403)
Q Consensus 265 ~~~~~~~ll~-~Ad~~~~~~L~~ 286 (403)
.....++. =|.+|++..|.+
T Consensus 82 --~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 82 --VFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred --CchhhhhhhhhhhcCcHHHHH
Confidence 23444444 899999998877
No 44
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.12 E-value=0.004 Score=58.21 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=69.4
Q ss_pred HHHHHHHhhcCC---CCceEEEe-CCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCC
Q 015666 174 GQGLKDLLESEI---GCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDK 249 (403)
Q Consensus 174 ~~~l~~~~~~~~---~~Dv~~~v-~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~ 249 (403)
..++..++.+.- ..|+++.. +|+.|.|||.+|++||.+|..-+...+ ....+|+-..+-+.+|..||+|+|-..
T Consensus 134 aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 134 AAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNT 211 (516)
T ss_pred chHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhh
Confidence 345555655543 35888776 667888999999999998865443221 133456666788999999999999773
Q ss_pred CCCcccccCCCCccccHHHHHHHHHHhcccChhhHHHHH
Q 015666 250 FPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLC 288 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~~~~L~~~c 288 (403)
-. +..+....|+.+..+|+++.|....
T Consensus 212 na------------~~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 212 NA------------EWKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hh------------hhhhHHHHHHhhhhhccHHHhHHHH
Confidence 22 1124457888888888877665543
No 45
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.078 Score=44.68 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCccccc-----CCC--------
Q 015666 194 GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIT-----GTT-------- 260 (403)
Q Consensus 194 ~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~-----~~~-------- 260 (403)
+|+.|.+-..+.. .|..+.+++...--......|.|+.|....|..+++|++...-....... ...
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6788888887766 88888888853211111146999999999999999999874432111000 000
Q ss_pred CccccHHHHHHHHHHhcccChhhHHHHHHHHHHccC
Q 015666 261 SMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEEL 296 (403)
Q Consensus 261 ~~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l 296 (403)
...+...++.+|..+|+++++++|..+|...+...+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 002345678899999999999999999998776544
No 46
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.25 E-value=0.013 Score=57.23 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=65.1
Q ss_pred eeeeeEEEEEEcCcccccc---CCCCCeeeccccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEecc------CCcce
Q 015666 15 ETVNGSHQFTVKGYSLAKG---MGPGKCLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDV 83 (403)
Q Consensus 15 ~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~F~~--~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~------~~~~v 83 (403)
....|+.+|+|.+|...+. ...+..+.|+.|.. .||..+.++|-||++...+. ++|+|+.... -.|+.
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~-~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGT-HLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcc-eeeeeeeecccCcccccccCC
Confidence 3456899999999965443 23466789999975 59999999999999888887 9999998863 36999
Q ss_pred EEEEEEEEeeC
Q 015666 84 RALFELTLVDQ 94 (403)
Q Consensus 84 ~~~~~~~ll~~ 94 (403)
+-++++.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 47
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.02 E-value=0.018 Score=44.19 Aligned_cols=49 Identities=29% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHHhhCcHHHHHHH
Q 015666 301 VATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESCPSLLSELL 354 (403)
Q Consensus 301 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~p~l~~ell 354 (403)
|+.++.+|..|++..|.+.|.+|+. .|+..+.++++|..|+. +.+..++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~--~nf~~~~~~~~f~~L~~---~~l~~iL 49 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFIL--KNFLEVAQSEEFLELSL---EQLLSLL 49 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHH--HHHHHHhcCcHHhcCCH---HHHHHHh
Confidence 3567888999999999999999999 99999999988888763 3444444
No 48
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.76 E-value=0.026 Score=52.89 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=115.6
Q ss_pred ceEEEeCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCccccHH
Q 015666 188 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 267 (403)
Q Consensus 188 Dv~~~v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 267 (403)
|.++......+.+|+.+|...|+.|..+....-..+....+.+..+....+..+.+++|.. +... ....
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~----------e~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH----------EMVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------HHHH
Confidence 3344445678999999999999999988765422333445778888999999999999988 3321 1245
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHc-cCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHHhhC
Q 015666 268 MVQHLLAAADLYNVDRLKLLCESKLCE-ELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEESC 346 (403)
Q Consensus 268 ~~~~ll~~Ad~~~~~~L~~~c~~~L~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~~~ 346 (403)
....++.+...|.++..+..|...+.. .++..++...+..+..+....|...+...+. ..+....+++.+..+....
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~--~~~~~H~~t~~~~~~~c~~ 174 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM--LLFDLHLQTEKWFAYTCPI 174 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH--HHHHHHhcccCceeeecCc
Confidence 667788888899999999999888766 4677899999999999999999999999998 8888888888777665543
Q ss_pred cH
Q 015666 347 PS 348 (403)
Q Consensus 347 p~ 348 (403)
+.
T Consensus 175 c~ 176 (319)
T KOG1778|consen 175 CK 176 (319)
T ss_pred cc
Confidence 33
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.56 E-value=0.45 Score=39.66 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=72.6
Q ss_pred ceEEEeCCceeeeehhhhhhcCHHH-HHHhccccc---CCCCCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCCcc
Q 015666 188 DIVFEVGDETFKAHKLILAARSPVF-RAQFYGLVG---DRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 263 (403)
Q Consensus 188 Dv~~~v~~~~~~aHk~iLa~~S~~F-~~~f~~~~~---e~~~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 263 (403)
=|.+.|||..|-.-|.-|+.-+.-| ..+....+. ..+..--.+-|-+|.-|..+|.|+-.|++-...
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--------- 92 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--------- 92 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh---------
Confidence 4777899999999999999888444 455544321 222233567788999999999999999987432
Q ss_pred ccHHHHHHHHHHhcccChhhHHHHHHHHHHcc
Q 015666 264 TTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 264 ~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
-.-..+|.-|+.|.++.|.++..+.|.+.
T Consensus 93 ---l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 93 ---LSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ---hhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 23457888999999999999998888764
No 50
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=1.4 Score=35.13 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=69.2
Q ss_pred eEEE-eCCceeeeehhhhhhcCHHHHHHhcccccCCCCCcEEEcCCCHHHHHHHHHHHhcCC--CCCccc-ccCCCCc--
Q 015666 189 IVFE-VGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDK--FPDVYE-ITGTTSM-- 262 (403)
Q Consensus 189 v~~~-v~~~~~~aHk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~iYt~~--~~~~~~-~~~~~~~-- 262 (403)
+.++ .+|..|.+.+. .|-+|-..+.|+... .+. .-.|.++.+...+|..+++|+-... ...... .....+.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 4444 36677777764 466888888877532 111 1236788999999999999995432 222111 1111111
Q ss_pred --------cccHHHHHHHHHHhcccChhhHHHHHHHHHHccCChh
Q 015666 263 --------CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAE 299 (403)
Q Consensus 263 --------~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l~~~ 299 (403)
..+.+++.++..+|+++.++.|.++|+..+...+...
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgk 125 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGK 125 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccC
Confidence 2345677888889999999999999998776544333
No 51
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.25 Score=54.68 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=95.8
Q ss_pred eeecccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecc-CC---cceEEEEEEEEeeCCCCCccceecccccccccCC
Q 015666 39 CLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-EG---TDVRALFELTLVDQSGKGKHKVHSHFDRALESGP 114 (403)
Q Consensus 39 ~~~S~~F~~~g~~W~l~~~p~g~~~~~~~~~lslyL~~~~-~~---~~v~~~~~~~ll~~~g~~~~~~~~~~~~~~~~~~ 114 (403)
...||.|..|+.+|++.+.|+++. . ..++.|+.|.. +. |.+.+.+.+.+.|..+ ........ ..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~-~~~~~~~~-------~~ 109 (1093)
T KOG1863|consen 42 RALSSNFGAGATKWKILIAPKVNS--L--QSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTID-NLPDPEKA-------IH 109 (1093)
T ss_pred HhcCccccccccceeeeeccccCc--c--cceeEEeeeccCCCCcceEecchhhhccccCCC-Cchhhhhh-------hh
Confidence 467999999999999999999972 2 26899999973 22 8899999999999332 22111111 12
Q ss_pred ccccccCcc-Cccceeeccccc--cCcccCCCcEEEEEEeeeeccccCCCCCcccCCCCCchHHHHHHHhhcCCCCceEE
Q 015666 115 YTLKYRGSM-GYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVF 191 (403)
Q Consensus 115 ~~~~~~~~~-G~~~fi~~~~L~--~~~~l~dd~l~i~~~v~i~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~~ 191 (403)
+.|...... |+..|+.++++. ..+|+.+|++.+++.|.+....... ...+. .......|-+
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~------------~~~d~----k~~tg~~vGL 173 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM------------NPYDS----KRLTGFPVGL 173 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc------------chhhh----hhcCCCCccc
Confidence 233333333 888888888885 5789999999999999988621110 00110 1122334555
Q ss_pred EeCCceeeeehhhhhhc-CHHHHHHhcc
Q 015666 192 EVGDETFKAHKLILAAR-SPVFRAQFYG 218 (403)
Q Consensus 192 ~v~~~~~~aHk~iLa~~-S~~F~~~f~~ 218 (403)
.=.|.+.++...+-+-- =+.|+..++.
T Consensus 174 ~N~GaTCY~NsllQ~lf~~~~FR~~Vy~ 201 (1093)
T KOG1863|consen 174 KNLGATCYVNSLLQVLFLIPEFRRAVYS 201 (1093)
T ss_pred cCCCceeeehHHHHHHHccHHHHHHHhc
Confidence 55566666666555433 2456666553
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.04 E-value=0.6 Score=34.24 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHhcccChhhHHHHHHHHHHccC---ChhhHHHHHHHHHhCC
Q 015666 265 TTNMVQHLLAAADLYNVDRLKLLCESKLCEEL---NAETVATTLALAEQHQ 312 (403)
Q Consensus 265 ~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~l---~~~n~~~~l~~A~~~~ 312 (403)
+...+.+|+.+|++++++.|.+.|...+...+ +++.+..++.+...+.
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 45789999999999999999999999886654 4445555555555444
No 53
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=84.72 E-value=1.7 Score=42.66 Aligned_cols=57 Identities=37% Similarity=0.500 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHcccchhHHHh-----hCcHHHHHHHHHH
Q 015666 296 LNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSEGFKHLEE-----SCPSLLSELLKTL 357 (403)
Q Consensus 296 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~f~~l~~-----~~p~l~~ell~~~ 357 (403)
+..+|++.++..|.+|..+.|...|++||. ..++....|..|.+ +.|+++.-+++.+
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr-----~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~i 246 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR-----KNLMADNAFLELFQRAKLFDEPSLISICLEVI 246 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HhcCChHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 578899999999999999999999999998 44566666777666 4577766655543
No 54
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.15 E-value=12 Score=33.39 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCceE-EEeCCceeeeehh-hhhhcCHHHHHHhcccccCCC--CCcEEEcCCCHHHHHHHHHHHhcCCCCCcccccCCCC
Q 015666 186 GCDIV-FEVGDETFKAHKL-ILAARSPVFRAQFYGLVGDRN--LDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTS 261 (403)
Q Consensus 186 ~~Dv~-~~v~~~~~~aHk~-iLa~~S~~F~~~f~~~~~e~~--~~~i~l~d~~~~~f~~~L~~iYt~~~~~~~~~~~~~~ 261 (403)
+.|++ +.|||+-|..-.. +++-.-.....||.+...-.. ..... -|=+-..|+.+|.|+-+.....+
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~f-IDRDG~lFRyvL~~LRt~~l~lp-------- 77 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYF-IDRDGFLFRYVLDYLRTKALLLP-------- 77 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEE-EcCCcchHHHHHHHhcccccccc--------
Confidence 44544 4466665554434 333344566777776322211 12222 35567789999999999444332
Q ss_pred ccccHHHHHHHHHHhcccChhhHHHHHHHH
Q 015666 262 MCTTTNMVQHLLAAADLYNVDRLKLLCESK 291 (403)
Q Consensus 262 ~~~~~~~~~~ll~~Ad~~~~~~L~~~c~~~ 291 (403)
....+...|+..|++|+++.+...+.+.
T Consensus 78 --e~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 78 --EDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred --hhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 1246788999999999999877755543
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.18 E-value=11 Score=34.96 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.7
Q ss_pred CCCceEEEeCCceeeeehhhhhhcC-HHHHHHhcccccC---CCCCcEEE-cCCCHHHHHHHHHHHhcCCCCCcccccCC
Q 015666 185 IGCDIVFEVGDETFKAHKLILAARS-PVFRAQFYGLVGD---RNLDKVVV-KDVEPSIFKAMLLFIYTDKFPDVYEITGT 259 (403)
Q Consensus 185 ~~~Dv~~~v~~~~~~aHk~iLa~~S-~~F~~~f~~~~~e---~~~~~i~l-~d~~~~~f~~~L~~iYt~~~~~~~~~~~~ 259 (403)
..--++..+++-.|.+.+.+|.+.- ...-.||.+++.= ....+.++ ++++..+|+++|+|.-+|.+.-++
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~----- 168 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS----- 168 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-----
Confidence 3445788889999999999888653 2344666554322 22345665 569999999999999998765432
Q ss_pred CCccccHHHHHHHHHHhcccCh
Q 015666 260 TSMCTTTNMVQHLLAAADLYNV 281 (403)
Q Consensus 260 ~~~~~~~~~~~~ll~~Ad~~~~ 281 (403)
.-.+.+|-+++|++.+
T Consensus 169 ------~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 169 ------SVSVSELREACDYLLV 184 (438)
T ss_pred ------CCchHHHHhhcceEEe
Confidence 2357777788887765
No 56
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=52.99 E-value=34 Score=25.80 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHccC------------ChhhHHHHHHHHHh--CCChHHHHHHHHHhcCCCCh
Q 015666 270 QHLLAAADLYNVDRLKLLCESKLCEEL------------NAETVATTLALAEQ--HQCPQLKAICLKFAATPANL 330 (403)
Q Consensus 270 ~~ll~~Ad~~~~~~L~~~c~~~L~~~l------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~~~~~~ 330 (403)
.+++.+|+.|+++.|...|.+++..++ +.+.+..++.--.. .+-..+-+.++.++. .+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~--~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLK--HNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHH--CTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHH--hCH
Confidence 478899999999999999999987642 22333333332111 234567888888887 553
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=51.98 E-value=5.9 Score=37.13 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=37.6
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHccc
Q 015666 295 ELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGVIMQSE 337 (403)
Q Consensus 295 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~~ 337 (403)
.+++.|++.++.-++-...+.|.+.|+.|+. .|+.+++.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcCC
Confidence 4889999999999999999999999999999 8998888765
No 58
>PHA03098 kelch-like protein; Provisional
Probab=49.99 E-value=30 Score=35.26 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015666 296 LNAETVATTLALAEQHQCPQLKAICLKFAA 325 (403)
Q Consensus 296 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 325 (403)
++.+|+.+++..|..+..+.|+..|.+|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 678899999999999999999999999998
No 59
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=45.97 E-value=16 Score=27.95 Aligned_cols=29 Identities=41% Similarity=0.619 Sum_probs=26.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015666 297 NAETVATTLALAEQHQCPQLKAICLKFAA 325 (403)
Q Consensus 297 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 325 (403)
+.+++..++.+|..++.+.|...|.+++.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 37889999999999999999999999987
No 60
>PHA02713 hypothetical protein; Provisional
Probab=35.34 E-value=46 Score=34.33 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHhc
Q 015666 295 ELNAETVATTLALAEQHQCPQLKAICLKFAA 325 (403)
Q Consensus 295 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 325 (403)
.++.+|+..+|..|..+..+.|++.|.+|+.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999998
No 61
>PHA02790 Kelch-like protein; Provisional
Probab=35.03 E-value=61 Score=32.69 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHhcccChhhHHHHHHHHHHcc
Q 015666 265 TTNMVQHLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 265 ~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
+.+|..+++.+|+.|+++.|.+.+.+++.++
T Consensus 121 ~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 121 RKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred CcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999998775
No 62
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.67 E-value=32 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHhcccChhhHHHHHHHHHHcc
Q 015666 264 TTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 264 ~~~~~~~~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
++..++...+.+|.+|+++.++..|.++|..+
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 45689999999999999999999999998764
No 63
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=28.44 E-value=53 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHhcccChhhHHHHHHHHHHcc
Q 015666 271 HLLAAADLYNVDRLKLLCESKLCEE 295 (403)
Q Consensus 271 ~ll~~Ad~~~~~~L~~~c~~~L~~~ 295 (403)
+++.+|+.|+.+.|...|..++..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999998764
No 64
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=20.18 E-value=4.1e+02 Score=20.39 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=37.6
Q ss_pred ceEEEeCC--ceeeeehhhhhhcCHHHHHHhcccccC---CCCCcEEEcCCCHHHHHHHHHHH
Q 015666 188 DIVFEVGD--ETFKAHKLILAARSPVFRAQFYGLVGD---RNLDKVVVKDVEPSIFKAMLLFI 245 (403)
Q Consensus 188 Dv~~~v~~--~~~~aHk~iLa~~S~~F~~~f~~~~~e---~~~~~i~l~d~~~~~f~~~L~~i 245 (403)
-+.+.||+ +.|-+....|. .|.|+.++...-.| ...+.|.|+ -+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 46677765 67888888874 68999999643222 224457776 7778888887664
Done!