BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015667
         (403 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 41.2 bits (95), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302
           VC IC  ELG   + F+  C C GEL   H+ C   W TI  N  C +C
Sbjct: 8   VCWICNEELGN--ERFR-ACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 35.0 bits (79), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305
           +CRIC  E G+        C C G L   H+ C  +W      + C++CK +
Sbjct: 17  ICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307
           C ICL  L EG D+ +L C     + L H+ C  +W     NK C +C+ D++
Sbjct: 17  CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLI--TNKKCPICRVDIE 62


>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
           A Resolution
 pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
           A Resolution
          Length = 261

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 272 ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTLLKIHNPQTVIRRPQTIVQ 331
           E + K  LALA K           NKT DV K   + + +  L   N +TVIR    +++
Sbjct: 183 EMTLKSALALAIKVL---------NKTMDVSKLSAEKVEIATLTRENGKTVIR----VLK 229

Query: 332 QREV 335
           Q+EV
Sbjct: 230 QKEV 233


>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
 pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
 pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
 pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
 pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
 pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
          Length = 332

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 195 VPVNIKVRSLRRTESGGGLIRVISVSTRSAAVERISVNDDPATDI 239
           +P +++   L R E+GGG+I  + ++   A   R  +NDDPA  +
Sbjct: 154 LPPHLQGWRLERPEAGGGVI--LDITVHDADTLRFVLNDDPAEAV 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,829,962
Number of Sequences: 62578
Number of extensions: 343729
Number of successful extensions: 696
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 7
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)