Query 015667
Match_columns 403
No_of_seqs 254 out of 1217
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00744 RINGv The RING-vari 99.5 4.8E-15 1E-19 110.6 3.5 49 254-303 1-49 (49)
2 PHA02825 LAP/PHD finger-like p 99.4 6E-13 1.3E-17 121.1 5.6 59 247-309 3-61 (162)
3 PF12906 RINGv: RING-variant d 99.4 2.4E-13 5.3E-18 100.7 2.1 47 255-302 1-47 (47)
4 PHA02862 5L protein; Provision 99.3 1.4E-12 3.1E-17 117.2 3.1 56 252-311 2-57 (156)
5 COG5183 SSM4 Protein involved 99.1 2.7E-11 5.9E-16 131.0 3.5 68 249-317 9-76 (1175)
6 KOG1609 Protein involved in mR 99.1 6.4E-11 1.4E-15 113.9 5.1 70 244-313 70-140 (323)
7 KOG4628 Predicted E3 ubiquitin 99.1 4E-11 8.7E-16 120.9 3.8 51 253-309 230-280 (348)
8 PF13639 zf-RING_2: Ring finge 99.1 8.8E-11 1.9E-15 84.4 2.8 44 253-303 1-44 (44)
9 KOG3053 Uncharacterized conser 99.0 1.2E-10 2.6E-15 113.1 0.4 63 247-309 15-84 (293)
10 PF12678 zf-rbx1: RING-H2 zinc 98.7 2E-08 4.3E-13 80.4 4.4 44 253-303 20-73 (73)
11 COG5540 RING-finger-containing 98.5 6.3E-08 1.4E-12 96.4 3.9 51 250-307 321-372 (374)
12 PHA02929 N1R/p28-like protein; 98.5 8.1E-08 1.8E-12 93.0 3.5 52 251-309 173-229 (238)
13 PF12861 zf-Apc11: Anaphase-pr 98.4 2.5E-07 5.4E-12 77.0 3.5 52 252-308 21-83 (85)
14 COG5243 HRD1 HRD ubiquitin lig 98.3 5.6E-07 1.2E-11 91.8 4.4 52 249-307 284-345 (491)
15 cd00162 RING RING-finger (Real 98.2 1.2E-06 2.6E-11 60.3 3.2 45 254-306 1-45 (45)
16 PF13920 zf-C3HC4_3: Zinc fing 98.1 3E-06 6.6E-11 62.5 3.7 47 252-308 2-49 (50)
17 KOG1493 Anaphase-promoting com 98.1 8.4E-07 1.8E-11 72.8 0.3 50 254-308 22-82 (84)
18 KOG0802 E3 ubiquitin ligase [P 98.0 2.8E-06 6.2E-11 90.1 2.3 50 250-306 289-340 (543)
19 PLN03208 E3 ubiquitin-protein 98.0 7.4E-06 1.6E-10 77.3 4.2 50 250-307 16-79 (193)
20 smart00184 RING Ring finger. E 97.9 1E-05 2.2E-10 53.7 2.8 39 255-302 1-39 (39)
21 PF00097 zf-C3HC4: Zinc finger 97.7 1.9E-05 4.1E-10 55.5 2.5 41 255-302 1-41 (41)
22 COG5194 APC11 Component of SCF 97.7 1.9E-05 4.1E-10 65.4 2.4 32 271-309 52-83 (88)
23 PHA02926 zinc finger-like prot 97.7 2.1E-05 4.7E-10 75.9 3.0 55 250-309 168-232 (242)
24 PF13923 zf-C3HC4_2: Zinc fing 97.7 3.3E-05 7.1E-10 54.4 3.0 39 255-302 1-39 (39)
25 PF11793 FANCL_C: FANCL C-term 97.4 6.8E-05 1.5E-09 59.8 1.2 56 252-307 2-66 (70)
26 PF14634 zf-RING_5: zinc-RING 97.3 0.00015 3.2E-09 52.5 2.7 44 254-304 1-44 (44)
27 KOG0823 Predicted E3 ubiquitin 97.3 0.00055 1.2E-08 66.3 6.3 53 248-308 43-96 (230)
28 smart00504 Ubox Modified RING 97.2 0.00037 8.1E-09 52.6 3.9 45 253-307 2-46 (63)
29 KOG0828 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 76.5 2.1 58 244-307 563-634 (636)
30 COG5219 Uncharacterized conser 97.2 9.6E-05 2.1E-09 82.6 0.3 53 251-308 1468-1524(1525)
31 KOG0317 Predicted E3 ubiquitin 97.0 0.00045 9.8E-09 68.8 3.1 52 247-308 234-285 (293)
32 KOG2930 SCF ubiquitin ligase, 97.0 0.00035 7.7E-09 60.5 1.9 32 270-308 78-109 (114)
33 KOG4265 Predicted E3 ubiquitin 97.0 0.00075 1.6E-08 68.8 4.2 52 248-309 286-338 (349)
34 TIGR00599 rad18 DNA repair pro 96.9 0.00049 1.1E-08 71.4 2.5 49 250-308 24-72 (397)
35 KOG1734 Predicted RING-contain 96.9 0.00026 5.6E-09 70.2 0.5 52 251-307 223-281 (328)
36 KOG0320 Predicted E3 ubiquitin 96.7 0.0012 2.6E-08 62.0 3.3 57 242-306 121-177 (187)
37 KOG0804 Cytoplasmic Zn-finger 96.6 0.00069 1.5E-08 71.0 1.2 49 250-307 173-222 (493)
38 PF15227 zf-C3HC4_4: zinc fing 96.6 0.0019 4.2E-08 46.8 3.1 40 255-302 1-42 (42)
39 KOG0827 Predicted E3 ubiquitin 96.4 0.0015 3.3E-08 67.5 2.1 47 252-303 4-52 (465)
40 KOG0825 PHD Zn-finger protein 96.4 0.0018 3.8E-08 71.7 2.2 54 251-311 122-175 (1134)
41 KOG1645 RING-finger-containing 96.0 0.0046 9.9E-08 64.4 3.1 52 251-307 3-56 (463)
42 PF13445 zf-RING_UBOX: RING-ty 95.5 0.013 2.9E-07 43.0 2.8 40 255-300 1-43 (43)
43 KOG2177 Predicted E3 ubiquitin 95.2 0.007 1.5E-07 54.8 0.9 46 249-304 10-55 (386)
44 PF04564 U-box: U-box domain; 95.1 0.024 5.2E-07 45.2 3.5 48 252-308 4-51 (73)
45 KOG4445 Uncharacterized conser 95.0 0.008 1.7E-07 60.7 0.5 51 252-307 115-186 (368)
46 COG5432 RAD18 RING-finger-cont 93.8 0.029 6.2E-07 56.7 1.4 48 252-309 25-72 (391)
47 KOG1941 Acetylcholine receptor 93.5 0.026 5.7E-07 58.8 0.6 49 250-303 363-412 (518)
48 TIGR00570 cdk7 CDK-activating 93.2 0.082 1.8E-06 53.6 3.7 51 252-308 3-55 (309)
49 PF05883 Baculo_RING: Baculovi 93.1 0.034 7.3E-07 50.2 0.7 41 252-292 26-67 (134)
50 KOG0801 Predicted E3 ubiquitin 93.0 0.043 9.3E-07 51.4 1.2 30 250-284 175-204 (205)
51 KOG1039 Predicted E3 ubiquitin 92.9 0.054 1.2E-06 55.6 1.9 55 250-309 159-223 (344)
52 KOG0287 Postreplication repair 92.8 0.04 8.7E-07 56.6 0.8 47 252-308 23-69 (442)
53 KOG1428 Inhibitor of type V ad 92.2 0.095 2.1E-06 61.9 2.9 54 251-309 3485-3546(3738)
54 COG5574 PEX10 RING-finger-cont 92.0 0.11 2.4E-06 51.7 2.6 51 249-308 212-263 (271)
55 KOG1785 Tyrosine kinase negati 91.8 0.087 1.9E-06 55.2 1.8 49 253-309 370-418 (563)
56 KOG2164 Predicted E3 ubiquitin 91.7 0.12 2.7E-06 55.2 2.9 49 252-308 186-237 (513)
57 PF14570 zf-RING_4: RING/Ubox 89.6 0.17 3.7E-06 38.4 1.2 46 255-307 1-48 (48)
58 KOG1952 Transcription factor N 89.6 0.27 5.9E-06 55.5 3.2 58 250-312 189-252 (950)
59 PF10367 Vps39_2: Vacuolar sor 89.3 0.21 4.5E-06 41.0 1.6 32 251-288 77-108 (109)
60 COG5236 Uncharacterized conser 87.7 0.74 1.6E-05 47.8 4.7 59 246-312 55-113 (493)
61 KOG0824 Predicted E3 ubiquitin 86.5 0.33 7.1E-06 49.3 1.3 47 252-307 7-53 (324)
62 PF07800 DUF1644: Protein of u 86.4 0.91 2E-05 42.3 4.1 56 251-309 1-93 (162)
63 PF08746 zf-RING-like: RING-li 84.0 0.53 1.1E-05 34.5 1.1 23 280-302 21-43 (43)
64 PF11789 zf-Nse: Zinc-finger o 83.4 0.89 1.9E-05 35.2 2.2 44 251-301 10-53 (57)
65 KOG3970 Predicted E3 ubiquitin 82.3 1 2.2E-05 44.4 2.6 50 252-307 50-105 (299)
66 KOG0311 Predicted E3 ubiquitin 80.9 0.25 5.3E-06 51.1 -2.2 48 252-307 43-90 (381)
67 KOG4172 Predicted E3 ubiquitin 79.7 0.59 1.3E-05 36.8 0.1 48 253-309 8-56 (62)
68 KOG1002 Nucleotide excision re 76.8 1 2.2E-05 49.1 0.8 51 249-307 533-586 (791)
69 COG5152 Uncharacterized conser 75.8 1.3 2.9E-05 42.9 1.2 46 252-307 196-241 (259)
70 KOG0978 E3 ubiquitin ligase in 74.7 0.94 2E-05 50.5 -0.1 47 252-307 643-689 (698)
71 PF10272 Tmpp129: Putative tra 74.5 3.7 7.9E-05 42.7 4.1 28 282-309 315-353 (358)
72 COG5175 MOT2 Transcriptional r 71.4 1.7 3.7E-05 45.1 0.8 51 250-307 12-64 (480)
73 KOG0802 E3 ubiquitin ligase [P 71.3 2.1 4.5E-05 46.2 1.5 54 242-309 469-522 (543)
74 KOG0827 Predicted E3 ubiquitin 69.1 0.41 9E-06 50.1 -4.1 50 253-309 197-247 (465)
75 KOG1571 Predicted E3 ubiquitin 68.0 3.7 7.9E-05 42.6 2.4 45 251-308 304-348 (355)
76 KOG4159 Predicted E3 ubiquitin 68.0 3.1 6.8E-05 43.7 2.0 52 250-311 82-133 (398)
77 KOG0956 PHD finger protein AF1 67.8 6 0.00013 44.5 4.0 119 183-309 54-184 (900)
78 PF14446 Prok-RING_1: Prokaryo 64.7 7.1 0.00015 30.4 2.8 45 251-306 4-51 (54)
79 PF14569 zf-UDP: Zinc-binding 64.6 7.1 0.00015 32.7 3.0 52 252-309 9-64 (80)
80 KOG2660 Locus-specific chromos 64.4 2.2 4.7E-05 43.8 -0.0 49 252-309 15-63 (331)
81 PHA03096 p28-like protein; Pro 60.7 4.4 9.5E-05 40.8 1.4 47 253-304 179-231 (284)
82 KOG0825 PHD Zn-finger protein 59.9 3.8 8.3E-05 46.6 0.9 51 247-303 210-264 (1134)
83 KOG1813 Predicted E3 ubiquitin 59.9 5.1 0.00011 40.8 1.7 49 251-309 240-288 (313)
84 KOG1940 Zn-finger protein [Gen 59.6 4.4 9.5E-05 40.8 1.1 44 254-304 160-204 (276)
85 KOG1814 Predicted E3 ubiquitin 59.3 5.7 0.00012 42.1 1.9 53 252-309 184-242 (445)
86 KOG2114 Vacuolar assembly/sort 59.0 4.6 9.9E-05 46.2 1.3 44 253-309 841-885 (933)
87 KOG3268 Predicted E3 ubiquitin 58.9 6.9 0.00015 37.6 2.3 51 251-307 164-228 (234)
88 PLN02638 cellulose synthase A 58.5 8.1 0.00018 45.3 3.1 51 252-307 17-70 (1079)
89 KOG1973 Chromatin remodeling p 56.9 5.8 0.00013 39.4 1.5 36 271-306 233-269 (274)
90 KOG0309 Conserved WD40 repeat- 56.7 6.2 0.00013 44.8 1.8 41 253-301 1029-1069(1081)
91 PLN02189 cellulose synthase 56.1 9.6 0.00021 44.6 3.2 51 252-307 34-87 (1040)
92 PLN02436 cellulose synthase A 55.6 8.9 0.00019 45.0 2.8 51 252-307 36-89 (1094)
93 KOG1100 Predicted E3 ubiquitin 55.5 10 0.00023 36.4 2.9 40 253-306 159-199 (207)
94 KOG2879 Predicted E3 ubiquitin 55.1 15 0.00032 37.3 3.9 52 250-309 237-289 (298)
95 PLN02195 cellulose synthase A 52.7 13 0.00028 43.3 3.5 50 252-307 6-59 (977)
96 KOG3039 Uncharacterized conser 52.3 40 0.00087 34.0 6.4 50 251-307 220-270 (303)
97 PF14835 zf-RING_6: zf-RING of 49.8 5.5 0.00012 32.2 0.0 45 252-307 7-51 (65)
98 KOG4692 Predicted E3 ubiquitin 49.0 11 0.00023 39.7 2.0 49 250-308 420-468 (489)
99 KOG0297 TNF receptor-associate 47.9 11 0.00023 39.4 1.8 52 249-309 18-69 (391)
100 KOG2034 Vacuolar sorting prote 47.9 8.6 0.00019 44.2 1.2 36 250-291 815-850 (911)
101 smart00249 PHD PHD zinc finger 47.1 6.8 0.00015 26.7 0.2 29 254-288 1-30 (47)
102 PLN02400 cellulose synthase 46.5 13 0.00028 43.7 2.4 50 252-307 36-89 (1085)
103 PLN02915 cellulose synthase A 46.2 19 0.00041 42.3 3.5 51 251-307 14-68 (1044)
104 KOG4275 Predicted E3 ubiquitin 44.5 9 0.0002 39.2 0.6 44 252-309 300-344 (350)
105 PF04641 Rtf2: Rtf2 RING-finge 41.9 32 0.0007 33.7 4.0 53 249-309 110-163 (260)
106 PF14447 Prok-RING_4: Prokaryo 41.4 14 0.0003 29.0 1.0 44 253-308 8-51 (55)
107 KOG3899 Uncharacterized conser 40.1 14 0.00031 37.9 1.3 31 281-311 328-369 (381)
108 PF00628 PHD: PHD-finger; Int 36.8 15 0.00033 26.6 0.6 44 254-303 1-49 (51)
109 KOG1729 FYVE finger containing 36.7 6.3 0.00014 39.8 -1.8 37 253-294 215-251 (288)
110 KOG4323 Polycomb-like PHD Zn-f 35.3 16 0.00035 39.3 0.8 56 250-309 166-228 (464)
111 KOG4443 Putative transcription 34.5 19 0.00041 40.4 1.1 24 269-294 34-57 (694)
112 COG5220 TFB3 Cdk activating ki 31.6 16 0.00035 36.6 0.1 53 250-308 8-65 (314)
113 KOG4185 Predicted E3 ubiquitin 30.5 43 0.00094 32.8 2.9 48 253-306 4-54 (296)
114 KOG0826 Predicted E3 ubiquitin 30.4 47 0.001 34.6 3.1 55 243-306 291-345 (357)
115 PRK05978 hypothetical protein; 28.8 24 0.00053 32.5 0.8 19 289-309 47-65 (148)
116 PF10571 UPF0547: Uncharacteri 27.4 18 0.00038 24.1 -0.3 12 296-307 14-25 (26)
117 PF06937 EURL: EURL protein; 26.9 55 0.0012 33.2 2.9 18 282-300 57-74 (285)
118 PF03854 zf-P11: P-11 zinc fin 24.2 40 0.00087 26.0 1.1 32 270-307 15-46 (50)
119 PF01440 Gemini_AL2: Geminivir 24.2 19 0.00041 32.8 -0.8 33 269-304 33-65 (134)
120 PF05290 Baculo_IE-1: Baculovi 22.3 52 0.0011 30.3 1.6 53 252-309 80-134 (140)
121 KOG0955 PHD finger protein BR1 22.0 40 0.00086 39.8 1.0 52 249-305 216-269 (1051)
122 KOG1473 Nucleosome remodeling 21.8 73 0.0016 38.2 3.0 129 247-384 339-483 (1414)
123 KOG1001 Helicase-like transcri 21.3 45 0.00099 37.5 1.2 48 253-309 455-502 (674)
No 1
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.53 E-value=4.8e-15 Score=110.65 Aligned_cols=49 Identities=47% Similarity=1.102 Sum_probs=44.5
Q ss_pred cceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccc
Q 015667 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (403)
Q Consensus 254 ~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr 303 (403)
.||||++ ++++++.+++||.|+|++|+||+.||.+|+..+++.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999998 445678899999999999999999999999998889999996
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.36 E-value=6e-13 Score=121.14 Aligned_cols=59 Identities=31% Similarity=0.689 Sum_probs=50.9
Q ss_pred CCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 247 DIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 247 d~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
|....+..||||+++.. ....||+|+|+++++|++||.+|+..+++..||+|+++|...
T Consensus 3 ~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 34466789999997753 235799999999999999999999999999999999999865
No 3
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.36 E-value=2.4e-13 Score=100.67 Aligned_cols=47 Identities=36% Similarity=0.970 Sum_probs=37.5
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplC 302 (403)
||||+++.++++ .++.||.|+|++.++|+.||.+|+..+++.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899998776543 78999999999999999999999999999999998
No 4
>PHA02862 5L protein; Provisional
Probab=99.28 E-value=1.4e-12 Score=117.20 Aligned_cols=56 Identities=25% Similarity=0.591 Sum_probs=48.4
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv 311 (403)
.+.||||+++.+++ ..||+|+|+++++|++||.+|++.+++..||+|+++|...+.
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 35799999875332 589999999999999999999999999999999999986533
No 5
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.12 E-value=2.7e-11 Score=131.01 Aligned_cols=68 Identities=28% Similarity=0.660 Sum_probs=59.7
Q ss_pred CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccccccccccC
Q 015667 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTLLKIH 317 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv~~~~~~ 317 (403)
.++.+.||||++|.- .|+++..||+|.|+++|+|++||.+|+..+++..|++|+++|++..++..+++
T Consensus 9 N~d~~~CRICr~e~~-~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP 76 (1175)
T COG5183 9 NEDKRSCRICRTEDI-RDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMP 76 (1175)
T ss_pred CccchhceeecCCCC-CCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCC
Confidence 455688999998874 56789999999999999999999999999999999999999999877765553
No 6
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.11 E-value=6.4e-11 Score=113.91 Aligned_cols=70 Identities=43% Similarity=0.857 Sum_probs=57.6
Q ss_pred CCCCCCCCCCcceecccCcCCCCc-eEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccccccc
Q 015667 244 AGEDIPEEEAVCRICLVELGEGGD-MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTL 313 (403)
Q Consensus 244 ~~ed~~eee~~CrICl~e~~e~~~-~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv~~ 313 (403)
..++.+.++..||||+++.++... .++.||.|+|+++++|+.|+++|+..|++..|++|++.+.+..+..
T Consensus 70 ~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~ 140 (323)
T KOG1609|consen 70 SLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKL 140 (323)
T ss_pred ccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceee
Confidence 334445557889999987654322 6889999999999999999999999999999999999999875544
No 7
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4e-11 Score=120.86 Aligned_cols=51 Identities=33% Similarity=0.730 Sum_probs=46.4
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..|.||+++|.+++.+++|||+ |.||..||+.||... +..||+||++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCC
Confidence 6899999999999999999999 999999999999883 45699999988754
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.06 E-value=8.8e-11 Score=84.44 Aligned_cols=44 Identities=36% Similarity=0.956 Sum_probs=39.0
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr 303 (403)
+.|.||++++..++.+..++|+ |.||.+||.+|++. +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHh--CCcCCccC
Confidence 3699999999888889999999 99999999999998 67999997
No 9
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.2e-10 Score=113.07 Aligned_cols=63 Identities=24% Similarity=0.585 Sum_probs=51.6
Q ss_pred CCCCCCCcceecccCcCCCCce-EEecCCCCCcCceecHhhHHHHHhhcC------Cccccccccccccc
Q 015667 247 DIPEEEAVCRICLVELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKG------NKTCDVCKQDVQNL 309 (403)
Q Consensus 247 d~~eee~~CrICl~e~~e~~~~-l~lPC~CkGslh~fH~~CL~~WL~~kg------~~tCplCr~~~~~~ 309 (403)
+..+.|..|+||+...++.... .+.||.|+|+.|++|+.||.+|+.+|. ...|+.|+.+|..+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 3446688999999876554333 689999999999999999999998873 25799999999865
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.68 E-value=2e-08 Score=80.40 Aligned_cols=44 Identities=27% Similarity=0.683 Sum_probs=33.7
Q ss_pred CcceecccCcCC----------CCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccc
Q 015667 253 AVCRICLVELGE----------GGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (403)
Q Consensus 253 ~~CrICl~e~~e----------~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr 303 (403)
+.|.||+..+.+ +-.+...+|+ |.||..||.+||+. +.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhc--CCcCCCCC
Confidence 349999988832 1233456799 99999999999988 77999997
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.3e-08 Score=96.41 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=45.1
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHh-hcCCccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT-IKGNKTCDVCKQDVQ 307 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~-~kg~~tCplCr~~~~ 307 (403)
..+-+|.|||+.+-.++..+.+||+ |.||..|+++|+. . ++.||+|+.++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y--~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY--SNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh--cccCCccCCCCC
Confidence 3457899999999888889999999 9999999999997 5 689999998764
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.48 E-value=8.1e-08 Score=92.96 Aligned_cols=52 Identities=21% Similarity=0.495 Sum_probs=41.3
Q ss_pred CCCcceecccCcCCCCc-----eEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 251 EEAVCRICLVELGEGGD-----MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~-----~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
.+.+|.||++++.+.+. ....+|. |.||.+||.+|++. +.+||+||..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 35689999988654331 2345699 99999999999987 78999999988865
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.38 E-value=2.5e-07 Score=77.02 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=38.9
Q ss_pred CCcceecccCcCC--------C-CceEE-ecCCCCCcCceecHhhHHHHHhhc-CCcccccccccccc
Q 015667 252 EAVCRICLVELGE--------G-GDMFK-LECSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e~~e--------~-~~~l~-lPC~CkGslh~fH~~CL~~WL~~k-g~~tCplCr~~~~~ 308 (403)
++.|.||...|+. + +-.++ -.|+ |.||.+||.+||... .+..||+||+++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~-----H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCS-----HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCc-----cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5568898877641 1 22333 3488 999999999999863 46899999999874
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.6e-07 Score=91.79 Aligned_cols=52 Identities=25% Similarity=0.678 Sum_probs=42.6
Q ss_pred CCCCCcceecccCcCCCC----------ceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 249 PEEEAVCRICLVELGEGG----------DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~----------~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
..++..|.|||+|+-..+ .+.++||+ |.+|-+||+-|+.. ..+||+||..+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ER--qQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLER--QQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHh--ccCCCcccCccc
Confidence 445678999999943222 34789999 99999999999988 789999999854
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.21 E-value=1.2e-06 Score=60.30 Aligned_cols=45 Identities=31% Similarity=0.815 Sum_probs=35.8
Q ss_pred cceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 254 ~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
.|.||++.+. +.....+|. |.||..|++.|++. ++..||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 4899998772 334455599 99999999999986 567899999753
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.10 E-value=3e-06 Score=62.50 Aligned_cols=47 Identities=30% Similarity=0.726 Sum_probs=38.7
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCcccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
+..|.||++... +...+||+ |. |...|+.+|++. +..||+||+.+..
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCG-----HLCFCEECAERLLKR--KKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTC-----EEEEEHHHHHHHHHT--TSBBTTTTBB-SE
T ss_pred cCCCccCCccCC---ceEEeCCC-----ChHHHHHHhHHhccc--CCCCCcCChhhcC
Confidence 467999998753 47889999 99 999999999995 8999999998753
No 17
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.4e-07 Score=72.77 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=39.8
Q ss_pred cceecccCcCC---------CCceEEec-CCCCCcCceecHhhHHHHHhhcCC-cccccccccccc
Q 015667 254 VCRICLVELGE---------GGDMFKLE-CSCKGELALAHKECAVKWFTIKGN-KTCDVCKQDVQN 308 (403)
Q Consensus 254 ~CrICl~e~~e---------~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~-~tCplCr~~~~~ 308 (403)
.|.||...|+. ++-++++. |. |.||..||.+|+..+.+ ..||+||++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~-----h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCL-----HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHH-----HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 79999887742 33345555 98 99999999999987654 589999999875
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-06 Score=90.15 Aligned_cols=50 Identities=32% Similarity=0.779 Sum_probs=43.5
Q ss_pred CCCCcceecccCcCCCCc--eEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667 250 EEEAVCRICLVELGEGGD--MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~--~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
.....|.||++++..+.+ ..+++|. |.||..|+..||+. ..+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 446789999999876655 7899999 99999999999998 79999999944
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.95 E-value=7.4e-06 Score=77.32 Aligned_cols=50 Identities=30% Similarity=0.587 Sum_probs=40.4
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--------------cCCccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--------------KGNKTCDVCKQDVQ 307 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--------------kg~~tCplCr~~~~ 307 (403)
.++..|.||++.+.+ ..+++|. |.|+..||.+|+.. ++...||+||..+.
T Consensus 16 ~~~~~CpICld~~~d---PVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCC---cEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 346789999987643 5678899 99999999999853 23468999999985
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.88 E-value=1e-05 Score=53.65 Aligned_cols=39 Identities=41% Similarity=0.914 Sum_probs=32.7
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplC 302 (403)
|.||++. ......++|. |.||..|++.|++ .++..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 7899876 3457888999 9999999999998 346789987
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.75 E-value=1.9e-05 Score=55.50 Aligned_cols=41 Identities=29% Similarity=0.818 Sum_probs=34.9
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplC 302 (403)
|.||++.+.+ ....++|. |.|+..||.+|++..+...||+|
T Consensus 1 C~iC~~~~~~--~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7899987754 23588999 99999999999996668899998
No 22
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.72 E-value=1.9e-05 Score=65.43 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=28.5
Q ss_pred ecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 271 LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 271 lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
--|+ |.||.+||.+||.+ +..||+|+++++..
T Consensus 52 G~Cn-----HaFH~HCI~rWL~T--k~~CPld~q~w~~~ 83 (88)
T COG5194 52 GVCN-----HAFHDHCIYRWLDT--KGVCPLDRQTWVLA 83 (88)
T ss_pred Eecc-----hHHHHHHHHHHHhh--CCCCCCCCceeEEe
Confidence 4499 99999999999999 67999999998743
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=97.71 E-value=2.1e-05 Score=75.85 Aligned_cols=55 Identities=18% Similarity=0.507 Sum_probs=40.5
Q ss_pred CCCCcceecccCcCCC----Cc--eEEecCCCCCcCceecHhhHHHHHhhc----CCccccccccccccc
Q 015667 250 EEEAVCRICLVELGEG----GD--MFKLECSCKGELALAHKECAVKWFTIK----GNKTCDVCKQDVQNL 309 (403)
Q Consensus 250 eee~~CrICl~e~~e~----~~--~l~lPC~CkGslh~fH~~CL~~WL~~k----g~~tCplCr~~~~~~ 309 (403)
..+.+|.|||+..-+. +. ....+|. |.|...||.+|.+.+ ..+.||+||..+.++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4468899999764221 11 1234599 999999999999764 246799999999866
No 24
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.69 E-value=3.3e-05 Score=54.39 Aligned_cols=39 Identities=38% Similarity=0.778 Sum_probs=31.7
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplC 302 (403)
|.||++++.+ ....++|+ |.|.++|+.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 7899987754 34678899 99999999999987 6899998
No 25
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.36 E-value=6.8e-05 Score=59.82 Aligned_cols=56 Identities=21% Similarity=0.435 Sum_probs=24.0
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc--C-------Cccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--G-------NKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k--g-------~~tCplCr~~~~ 307 (403)
+..|.||+....++++...+-|.-..=-+.||..||.+||... + .-.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3569999976543333333333211112789999999999652 1 135999998875
No 26
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.35 E-value=0.00015 Score=52.50 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=37.6
Q ss_pred cceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccc
Q 015667 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (403)
Q Consensus 254 ~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~ 304 (403)
.|.||+..|.+....+++.|. |.|...|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 488999999555667889999 999999999998 33789999985
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00055 Score=66.28 Aligned_cols=53 Identities=30% Similarity=0.505 Sum_probs=43.0
Q ss_pred CCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCC-cccccccccccc
Q 015667 248 IPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGN-KTCDVCKQDVQN 308 (403)
Q Consensus 248 ~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~-~tCplCr~~~~~ 308 (403)
.+...-.|-|||+.- .++.+..|. |+|-=-||.+||..+.+ ..||+||.++..
T Consensus 43 ~~~~~FdCNICLd~a---kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA---KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeecccc---CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 345568899999754 346888899 99999999999988755 567999999873
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.24 E-value=0.00037 Score=52.58 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
..|.||++-+.+ ...++|+ |.|-+.||.+|++. +.+||+|++.+.
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC---CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 469999877654 5778998 99999999999987 779999998763
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00015 Score=76.51 Aligned_cols=58 Identities=21% Similarity=0.594 Sum_probs=41.2
Q ss_pred CCCCCCCCCCcceecccCcC---CC-----------CceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 244 AGEDIPEEEAVCRICLVELG---EG-----------GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 244 ~~ed~~eee~~CrICl~e~~---e~-----------~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.++.-.+....|.|||...+ ++ .+-+..||+ |.||+.||.+|.... +-.||+||..+.
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 33344456788999996542 11 123456999 999999999999842 469999997653
No 30
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.18 E-value=9.6e-05 Score=82.61 Aligned_cols=53 Identities=23% Similarity=0.560 Sum_probs=38.4
Q ss_pred CCCcceecccCcCCCC----ceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 251 EEAVCRICLVELGEGG----DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 251 ee~~CrICl~e~~e~~----~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
...+|+||..-...-+ .-+.-.|+ |.||..||.+|++.+++++||+||.++.+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCk-----nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCK-----NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhh-----hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3467999974332111 11222377 99999999999999999999999987753
No 31
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00045 Score=68.76 Aligned_cols=52 Identities=23% Similarity=0.635 Sum_probs=43.7
Q ss_pred CCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 247 DIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 247 d~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
.+++....|.+||+... ++-..||+ |.|--.||..|..+ +..||+||..+..
T Consensus 234 ~i~~a~~kC~LCLe~~~---~pSaTpCG-----HiFCWsCI~~w~~e--k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS---NPSATPCG-----HIFCWSCILEWCSE--KAECPLCREKFQP 285 (293)
T ss_pred cCCCCCCceEEEecCCC---CCCcCcCc-----chHHHHHHHHHHcc--ccCCCcccccCCC
Confidence 45666789999997654 36789999 99999999999998 5679999998874
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00035 Score=60.50 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=28.5
Q ss_pred EecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 270 KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 270 ~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
--.|+ |.||..||.+||+. ++.||+|.++.+.
T Consensus 78 WG~CN-----HaFH~hCisrWlkt--r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 78 WGVCN-----HAFHFHCISRWLKT--RNVCPLDNKEWVF 109 (114)
T ss_pred eeecc-----hHHHHHHHHHHHhh--cCcCCCcCcceeE
Confidence 34599 99999999999999 8999999998764
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00075 Score=68.78 Aligned_cols=52 Identities=31% Similarity=0.580 Sum_probs=42.3
Q ss_pred CCCCCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667 248 IPEEEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 248 ~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..+++.+|-|||.|-. +..+|||+ |. .-..|.+.-.-. ++.|||||+.+..+
T Consensus 286 ~~~~gkeCVIClse~r---dt~vLPCR-----HLCLCs~Ca~~Lr~q--~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 286 ESESGKECVICLSESR---DTVVLPCR-----HLCLCSGCAKSLRYQ--TNNCPICRQPIEEL 338 (349)
T ss_pred cccCCCeeEEEecCCc---ceEEecch-----hhehhHhHHHHHHHh--hcCCCccccchHhh
Confidence 3466889999998754 48999999 86 889999987644 68999999998754
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=0.00049 Score=71.38 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=40.8
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
+....|.||++.+.. ..+++|. |.|...||..|+.. ...||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCg-----H~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCS-----HTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCC-----CchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 456789999987754 4578999 99999999999987 5689999998764
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00026 Score=70.19 Aligned_cols=52 Identities=27% Similarity=0.736 Sum_probs=39.7
Q ss_pred CCCcceecccCcCCC-------CceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 251 EEAVCRICLVELGEG-------GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 251 ee~~CrICl~e~~e~-------~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
++..|.||-...... |+.-.|.|+ |.||+.||+-|----...+||-||..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 356799996543221 155688999 9999999999975544789999998765
No 36
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0012 Score=62.04 Aligned_cols=57 Identities=18% Similarity=0.411 Sum_probs=43.9
Q ss_pred ccCCCCCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667 242 EEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 242 e~~~ed~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
++.++...+.-.-|.|||+.+.+. .+.-..|+ |+|-.+||+.-++. .+.||+|+..+
T Consensus 121 k~v~~~~~~~~~~CPiCl~~~sek-~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 121 KDVDPLRKEGTYKCPICLDSVSEK-VPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred ccccccccccccCCCceecchhhc-cccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 334444455568899999988652 23446799 99999999999987 89999999744
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.65 E-value=0.00069 Score=70.95 Aligned_cols=49 Identities=24% Similarity=0.716 Sum_probs=38.5
Q ss_pred CCCCcceecccCcCCCC-ceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 250 EEEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 250 eee~~CrICl~e~~e~~-~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.+-..|.|||+-+.+.- .++...|+ |-||..|+.+|- +.+||+||+--.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcc----cCcChhhhhhcC
Confidence 44678999998775432 34566799 999999999994 569999998765
No 38
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.63 E-value=0.0019 Score=46.76 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=30.4
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCc--ccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--TCDVC 302 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~--tCplC 302 (403)
|.||++-+.+ +..++|+ |.|=+.||.+|.+..+.. .||+|
T Consensus 1 CpiC~~~~~~---Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 7899977754 7889999 999999999999876443 79988
No 39
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0015 Score=67.52 Aligned_cols=47 Identities=26% Similarity=0.652 Sum_probs=33.7
Q ss_pred CCcceecccCcCCCCceE-EecCCCCCcCceecHhhHHHHHhhcC-Cccccccc
Q 015667 252 EAVCRICLVELGEGGDMF-KLECSCKGELALAHKECAVKWFTIKG-NKTCDVCK 303 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l-~lPC~CkGslh~fH~~CL~~WL~~kg-~~tCplCr 303 (403)
.+.|.||-+......++- +..|. |.||..||.+||..-- ++.||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 467999943333333333 33499 9999999999997643 47999999
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.0018 Score=71.75 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=43.6
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv 311 (403)
....|.||+..+.+....-..+|. |+||..||+.|-+. -.+||+|+.+|..+-|
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~-----H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTA-----HYFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccc-----cccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 357899998776554444567799 99999999999776 7899999999986644
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0046 Score=64.39 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=42.4
Q ss_pred CCCcceecccCcCCCCceE--EecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMF--KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l--~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.+..|.||++++...++.+ .+-|. |.|-.+||++||-.+....||+|+.+.-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4668999999987766654 34599 9999999999997556789999987764
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.46 E-value=0.013 Score=42.99 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=23.4
Q ss_pred ceecccCcCCCCc-eEEecCCCCCcCceecHhhHHHHHhhc--CCcccc
Q 015667 255 CRICLVELGEGGD-MFKLECSCKGELALAHKECAVKWFTIK--GNKTCD 300 (403)
Q Consensus 255 CrICl~e~~e~~~-~l~lPC~CkGslh~fH~~CL~~WL~~k--g~~tCp 300 (403)
|.||++ +.++++ +++|+|. |.|=++||++|++.. +.-.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 789998 654444 5889999 999999999999864 344565
No 43
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.007 Score=54.80 Aligned_cols=46 Identities=30% Similarity=0.646 Sum_probs=40.0
Q ss_pred CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~ 304 (403)
.+++..|.||++.+.+. .+++|. |.|=+.||..|+. ....||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 35678899999988764 889999 9999999999998 4789999994
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=95.09 E-value=0.024 Score=45.15 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
+..|.||.+-+.+ +.+++|+ |.|=+.||.+||.. ++.+||+|++.+..
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhC---ceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 5679999866644 6788998 99999999999987 57899999977653
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.96 E-value=0.008 Score=60.67 Aligned_cols=51 Identities=22% Similarity=0.560 Sum_probs=41.6
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc---------------------CCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK---------------------GNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k---------------------g~~tCplCr~~~~ 307 (403)
..+|.|||-.|.+++...+.+|- ||+|-.||.++|..= -...||+|+..+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 46799999999888788899999 999999998876431 1356999998876
No 46
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.76 E-value=0.029 Score=56.67 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=41.0
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
-..|+||.+-+.. ....+|. |-|-.-||...|.. ...||+|+.++...
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCg-----HtFCslCIR~hL~~--qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCG-----HTFCSLCIRRHLGT--QPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeec---ceecccc-----cchhHHHHHHHhcC--CCCCccccccHHhh
Confidence 4679999876654 4678899 99999999999998 88999999998754
No 47
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.47 E-value=0.026 Score=58.80 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=40.7
Q ss_pred CCCCcceecccCcCCCC-ceEEecCCCCCcCceecHhhHHHHHhhcCCccccccc
Q 015667 250 EEEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (403)
Q Consensus 250 eee~~CrICl~e~~e~~-~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr 303 (403)
|-+-.|-.|-+-+...+ +...+||. |.||..|+.+.|...+.++||-|+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHH
Confidence 34678999977665433 45579999 999999999999888899999999
No 48
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.21 E-value=0.082 Score=53.58 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=37.8
Q ss_pred CCcceecccC-cCCCCc-eEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 252 EAVCRICLVE-LGEGGD-MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e-~~e~~~-~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
+..|.||+.+ |-..+. .++.+|. |.|-..|++..|.. +...||+|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 3579999875 433332 2444799 99999999997754 56799999987764
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.12 E-value=0.034 Score=50.22 Aligned_cols=41 Identities=15% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcC-ceecHhhHHHHHh
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGEL-ALAHKECAVKWFT 292 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGsl-h~fH~~CL~~WL~ 292 (403)
..+|+||++...+.+.+..++|...=.| |.||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5679999998876567788887733333 5699999999943
No 50
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.043 Score=51.41 Aligned_cols=30 Identities=37% Similarity=0.911 Sum_probs=25.7
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecH
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHK 284 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~ 284 (403)
++..+|.|||++++.++.+-.|||-| ++|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLC-----IYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLC-----IYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEE-----Eeec
Confidence 34567999999999999999999997 7775
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.054 Score=55.59 Aligned_cols=55 Identities=24% Similarity=0.531 Sum_probs=40.2
Q ss_pred CCCCcceecccCcCCCC--c--eEEec-CCCCCcCceecHhhHHHHHhhcC-----Cccccccccccccc
Q 015667 250 EEEAVCRICLVELGEGG--D--MFKLE-CSCKGELALAHKECAVKWFTIKG-----NKTCDVCKQDVQNL 309 (403)
Q Consensus 250 eee~~CrICl~e~~e~~--~--~l~lP-C~CkGslh~fH~~CL~~WL~~kg-----~~tCplCr~~~~~~ 309 (403)
..+..|.|||+...+.- + ..++| |. |.|-..|+++|...+. +..||.||..-..+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45678999997643321 1 22456 99 9999999999985544 58999999876654
No 52
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.79 E-value=0.04 Score=56.63 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=40.1
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
--.|.||++-+.. +++.||. |-|-.-||.+.|.. +..||.|..++..
T Consensus 23 lLRC~IC~eyf~i---p~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcC---ceecccc-----chHHHHHHHHHhcc--CCCCCceecccch
Confidence 4579999965544 6889999 99999999999998 7899999988763
No 53
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=92.25 E-value=0.095 Score=61.91 Aligned_cols=54 Identities=24% Similarity=0.677 Sum_probs=42.1
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc--------CCccccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--------GNKTCDVCKQDVQNL 309 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k--------g~~tCplCr~~~~~~ 309 (403)
.++.|-||+.|--.....+.|-|. |.||-+|..+-|..+ +--.||+|++.+..+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 368899999775555566788999 999999998766553 346799999988644
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.11 Score=51.68 Aligned_cols=51 Identities=25% Similarity=0.487 Sum_probs=40.7
Q ss_pred CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHH-HHhhcCCcccccccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVK-WFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~-WL~~kg~~tCplCr~~~~~ 308 (403)
++.+..|.||++..+ .....+|. |+|--.||.. |=+.+ ...||+||+.+..
T Consensus 212 p~~d~kC~lC~e~~~---~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPE---VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccC---Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccc
Confidence 455678999997653 46788999 9999999999 86653 4569999988764
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.76 E-value=0.087 Score=55.22 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=40.8
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..|.||-+.. .++.+-||. |+.-..||..|-...+..+||.||.++...
T Consensus 370 eLCKICaend---KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccC---CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 5799996543 347888999 999999999998776679999999998754
No 56
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.12 Score=55.20 Aligned_cols=49 Identities=20% Similarity=0.617 Sum_probs=39.5
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh---cCCcccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDVQN 308 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~~~~ 308 (403)
+.+|.|||++... ...+-|+ |+|--.||.+.+.. ++-..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~---p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7889999977544 3455599 99999999998855 356889999998875
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.60 E-value=0.17 Score=38.37 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=21.4
Q ss_pred ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc--CCccccccccccc
Q 015667 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--GNKTCDVCKQDVQ 307 (403)
Q Consensus 255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k--g~~tCplCr~~~~ 307 (403)
|.+|.+++. ....-..||.| =++-|..=|...+ .+..||-||..|.
T Consensus 1 cp~C~e~~d-~~d~~~~PC~C------gf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCEC------GFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTT------S----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccc-cCCCccccCcC------CCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 678988773 33456789886 2456777777665 3789999999873
No 58
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.58 E-value=0.27 Score=55.48 Aligned_cols=58 Identities=21% Similarity=0.525 Sum_probs=43.1
Q ss_pred CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhc-----CCcccccccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIK-----GNKTCDVCKQDVQNLPVT 312 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~k-----g~~tCplCr~~~~~~pv~ 312 (403)
.+..+|-||.+...--..++--. |- |+||-.||.+|-+.+ +...||-|...+..+|.+
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCY-----hVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~ 252 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCY-----HVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKT 252 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhh-----hhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcc
Confidence 34578999998775544555422 66 999999999998553 357899999888877653
No 59
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.26 E-value=0.21 Score=41.00 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=25.6
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHH
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAV 288 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~ 288 (403)
++..|.+|...+.. ....+.||+ |.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEeccccc
Confidence 35669999887755 456678999 999999975
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.73 E-value=0.74 Score=47.82 Aligned_cols=59 Identities=24% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccccccc
Q 015667 246 EDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVT 312 (403)
Q Consensus 246 ed~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv~ 312 (403)
+|.+|++..|-||-.... -.-.+||+ |-.-+-|..+-...-....|++||.+...+-.|
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT 113 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAVVFT 113 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCC-----chHHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence 344566778999975432 23579999 888888887765544468999999998766444
No 61
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=0.33 Score=49.30 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=36.3
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.++|.||+.... -...|+|. |.|-..||+-=... +..+|++||+++.
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~-----HkFCyiCiKGsy~n-dk~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCF-----HKFCYICIKGSYKN-DKKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCC---cCcccccc-----chhhhhhhcchhhc-CCCCCceecCCCC
Confidence 356999997643 34778899 99999998765543 3578999999885
No 62
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.38 E-value=0.91 Score=42.32 Aligned_cols=56 Identities=25% Similarity=0.668 Sum_probs=37.4
Q ss_pred CCCcceecccCcCCCCceEEecCC-----CCC---cCceecHhhHHHHHhhcC---------------------------
Q 015667 251 EEAVCRICLVELGEGGDMFKLECS-----CKG---ELALAHKECAVKWFTIKG--------------------------- 295 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~-----CkG---slh~fH~~CL~~WL~~kg--------------------------- 295 (403)
++..|.|||+- +-+...|-|. |+- ..-+-|..||++..+..+
T Consensus 1 ed~~CpICme~---PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEH---PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccC---CCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 35689999954 3345556564 111 135789999999975532
Q ss_pred --Cccccccccccccc
Q 015667 296 --NKTCDVCKQDVQNL 309 (403)
Q Consensus 296 --~~tCplCr~~~~~~ 309 (403)
...||+||-++..-
T Consensus 78 ~~~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 78 QPELACPLCRGEVKGW 93 (162)
T ss_pred cccccCccccCceece
Confidence 34699999988743
No 63
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.95 E-value=0.53 Score=34.47 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=16.2
Q ss_pred ceecHhhHHHHHhhcCCcccccc
Q 015667 280 ALAHKECAVKWFTIKGNKTCDVC 302 (403)
Q Consensus 280 h~fH~~CL~~WL~~kg~~tCplC 302 (403)
--+|..|+..+++.+.+..||.|
T Consensus 21 ~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 21 VRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -EE-HHHHHHHTTT-SS-B-TTT
T ss_pred chHHHHHHHHHHhcCCCCCCcCC
Confidence 56999999999998766689988
No 64
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=83.41 E-value=0.89 Score=35.19 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV 301 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCpl 301 (403)
....|.|.+..+.+ .+....|+ |.|-++.|.+||+.++...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~-----H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCG-----HTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS-------EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCC-----CeecHHHHHHHHHhcCCCCCCC
Confidence 35679999988764 34455799 9999999999997667889999
No 65
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.30 E-value=1 Score=44.43 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=39.0
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc------CCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK------GNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k------g~~tCplCr~~~~ 307 (403)
..-|+.|-..+.++ +...|-|- |+||-.|+.+|-..- ..-.||-|.+++.
T Consensus 50 ~pNC~LC~t~La~g-dt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASG-DTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccC-cceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34599998777654 56678899 999999999996431 1357999999986
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=0.25 Score=51.10 Aligned_cols=48 Identities=29% Similarity=0.607 Sum_probs=38.4
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
+..|.|||.-+.. ......|. |-|-.+||.+=|+. +++.||-||+...
T Consensus 43 ~v~c~icl~llk~--tmttkeCl-----hrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 43 QVICPICLSLLKK--TMTTKECL-----HRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhccHHHHHHHHh--hcccHHHH-----HHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 5789999865432 23455699 99999999999986 6899999998876
No 67
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.72 E-value=0.59 Score=36.82 Aligned_cols=48 Identities=15% Similarity=0.482 Sum_probs=31.8
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
++|-||++.--+ .....|. |. .-.+|-.+-++. ++.+||+||..++.+
T Consensus 8 dECTICye~pvd---sVlYtCG-----HMCmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVD---SVLYTCG-----HMCMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcch---HHHHHcc-----hHHhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 679999865322 2333477 54 556786655443 478999999887754
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=76.79 E-value=1 Score=49.07 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=39.2
Q ss_pred CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh---cCCccccccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDVQ 307 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~~~ 307 (403)
..++.+|.+|.+.- ++.....|+ |.|-+-|+.+++.. ..+.+||+|...+.
T Consensus 533 nk~~~~C~lc~d~a---ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPA---EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChh---hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 45677899998654 335677899 99999999998743 34689999986654
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=75.84 E-value=1.3 Score=42.94 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=38.7
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
...|-||..+|+. +.+..|. |+|-..|+.+=++. ...|-+|+.+-.
T Consensus 196 PF~C~iCKkdy~s---pvvt~CG-----H~FC~~Cai~~y~k--g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECG-----HSFCSLCAIRKYQK--GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---hhhhhcc-----hhHHHHHHHHHhcc--CCcceecchhhc
Confidence 4689999999865 5778899 99999999988775 789999997654
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.68 E-value=0.94 Score=50.52 Aligned_cols=47 Identities=15% Similarity=0.490 Sum_probs=37.5
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
--.|..|-....+ ..+.-|. |.|-.+|+.+-+.++ .+.||.|+..|.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~-----H~FC~~Cvq~r~etR-qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCG-----HVFCEECVQTRYETR-QRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhh---HHHHhcc-----hHHHHHHHHHHHHHh-cCCCCCCCCCCC
Confidence 3568999744432 4455699 999999999999886 799999998886
No 71
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.51 E-value=3.7 Score=42.70 Aligned_cols=28 Identities=32% Similarity=0.701 Sum_probs=22.9
Q ss_pred ecHhhHHHHHhhc-----------CCccccccccccccc
Q 015667 282 AHKECAVKWFTIK-----------GNKTCDVCKQDVQNL 309 (403)
Q Consensus 282 fH~~CL~~WL~~k-----------g~~tCplCr~~~~~~ 309 (403)
.--+|+-+||..| |+..||.||..|-.+
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 3568999999776 467899999998765
No 72
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.41 E-value=1.7 Score=45.14 Aligned_cols=51 Identities=22% Similarity=0.621 Sum_probs=33.6
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcC--Cccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKG--NKTCDVCKQDVQ 307 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg--~~tCplCr~~~~ 307 (403)
++++.|..|+++..-.+. -..||.|. | +-|---|-.++. |..||-||..|.
T Consensus 12 deed~cplcie~mditdk-nf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDK-NFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccC-CcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 345669999988765433 34588872 2 445555655542 579999998774
No 73
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=2.1 Score=46.16 Aligned_cols=54 Identities=28% Similarity=0.654 Sum_probs=39.7
Q ss_pred ccCCCCCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 242 EEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 242 e~~~ed~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
+.+.+...+.++.|+||..+. ..++.+|. |..|+.+|+.. ...||+|+....+-
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~--~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 469 EATPSQLREPNDVCAICYQEM----SARITPCS--------HALCLRKWLYV--QEVCPLCHTYMKED 522 (543)
T ss_pred CCChhhhhcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhh--ccccCCCchhhhcc
Confidence 334455666788999998776 23444454 99999999988 67999998777643
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.12 E-value=0.41 Score=50.11 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=40.8
Q ss_pred CcceecccCcCCC-CceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEG-GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~-~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..|.||.+.|.+. ++.-.+.|. |..|.+||.+||.. ...|+-|+.++...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g-----~~~~~~kL~k~L~~--~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCG-----HIYHHGKLSKWLAT--KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhc-----ccchhhHHHHHHHH--HHHhHHHHhhhhhh
Confidence 5699999887654 445567799 99999999999988 68999999887644
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.04 E-value=3.7 Score=42.64 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=31.0
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
....|-||+++..+ ...+||. |.-- |..-- ++ ...||+||+.++-
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcG-----h~cc--ct~cs-~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCG-----HVCC--CTLCS-KH--LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeecCC-----cEEE--chHHH-hh--CCCCchhHHHHHH
Confidence 35789999987543 6789999 6632 33322 22 5679999998764
No 76
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.00 E-value=3.1 Score=43.72 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv 311 (403)
..+..|-||+.-+.. ...+||. |.|-..||++=+.. +.-||+|+.++.-.+.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcg-----hs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~ 133 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCG-----HSFCLECLDRSLDQ--ETECPLCRDELVELPA 133 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccccc-----ccccHHHHHHHhcc--CCCCcccccccccchH
Confidence 567889999766543 5677999 99999999997665 7899999999986544
No 77
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=67.79 E-value=6 Score=44.49 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=68.4
Q ss_pred cccccccccccCcccccccCCccccccCCCeEEEeec--CCCcccccccccCCCCCCCcccccCCCCCCCCCCcceeccc
Q 015667 183 LRTQQKMTRSFSVPVNIKVRSLRRTESGGGLIRVISV--STRSAAVERISVNDDPATDIATEEAGEDIPEEEAVCRICLV 260 (403)
Q Consensus 183 ~~~~~~i~Rs~svP~~~~~~s~r~~ds~gG~~RVvp~--spr~~~~~~~~~~~~~~~~~~~e~~~ed~~eee~~CrICl~ 260 (403)
=+.|..+.|=++-=--.+++-|++.|-. |..-||.+ -|.+.=++- ...+++.-.+-..+.-...|.||-+
T Consensus 54 CesqeraarvrCeLCP~kdGALKkTDn~-GWAHVVCALYIPEVrFgNV-------~TMEPIiLq~VP~dRfnKtCYIC~E 125 (900)
T KOG0956|consen 54 CESQERAARVRCELCPHKDGALKKTDNG-GWAHVVCALYIPEVRFGNV-------HTMEPIILQDVPHDRFNKTCYICNE 125 (900)
T ss_pred hhhhhhhccceeecccCcccceecccCC-CceEEEEEeeccceeeccc-------ccccceeeccCchhhhcceeeeecc
Confidence 3444555665554223578889999975 59999886 333221111 1111221122222344688999976
Q ss_pred CcCCCC--ceEEecCCCCCcCceecHhhHHHH--H-hhc-----CCccccccccccccc
Q 015667 261 ELGEGG--DMFKLECSCKGELALAHKECAVKW--F-TIK-----GNKTCDVCKQDVQNL 309 (403)
Q Consensus 261 e~~e~~--~~l~lPC~CkGslh~fH~~CL~~W--L-~~k-----g~~tCplCr~~~~~~ 309 (403)
+..+.. .--.|.|+=.|--..||..|...- | .+. +-.+|-.|++.|..+
T Consensus 126 ~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 126 EGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred cCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 633221 123466665555589999998764 1 111 237899999999755
No 78
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=64.73 E-value=7.1 Score=30.44 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=33.7
Q ss_pred CCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhcCCccccc--ccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDV--CKQDV 306 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCpl--Cr~~~ 306 (403)
.+..|.+|-..+..++.+.+-| |. .-+|++| |.. ...|-+ |+..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cg-----apyHR~C---~~~---~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECG-----APYHRDC---WEK---AGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCC-----CcccHHH---Hhh---CCceEeccCCCCc
Confidence 4567999998887777888877 99 9999999 433 356665 65443
No 79
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=64.64 E-value=7.1 Score=32.67 Aligned_cols=52 Identities=27% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCcceecccCc--CCCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 252 EAVCRICLVEL--GEGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~--~e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
...|.||-++. .+.+++++ ..|. --+-+.|..-=++. |+..||.||..|...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred CcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 56799997654 34445554 3466 56788898776665 799999999999855
No 80
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=64.42 E-value=2.2 Score=43.84 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=39.0
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
...|++|- .|-- +...+..|- |-|-+.||.+.|.. +++||.|+..+...
T Consensus 15 ~itC~LC~-GYli-DATTI~eCL-----HTFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCG-GYLI-DATTITECL-----HTFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhcc-ceee-cchhHHHHH-----HHHHHHHHHHHHHH--hccCCccceeccCc
Confidence 56799995 4432 235667799 99999999999998 89999999877655
No 81
>PHA03096 p28-like protein; Provisional
Probab=60.71 E-value=4.4 Score=40.80 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=32.0
Q ss_pred CcceecccCcCCC---C-ceEEec-CCCCCcCceecHhhHHHHHhhcC-Ccccccccc
Q 015667 253 AVCRICLVELGEG---G-DMFKLE-CSCKGELALAHKECAVKWFTIKG-NKTCDVCKQ 304 (403)
Q Consensus 253 ~~CrICl~e~~e~---~-~~l~lP-C~CkGslh~fH~~CL~~WL~~kg-~~tCplCr~ 304 (403)
..|.||++...+. + .--+|+ |. |.|--.|+..|...+. +.+|+.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~-----h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIK-----HEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCC-----cHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999754321 1 122455 99 9999999999997652 345666553
No 82
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.89 E-value=3.8 Score=46.58 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCCCCCCcceecccCcCCCCceEEec--CCCCCcCceecHhhHHHHHhh--cCCccccccc
Q 015667 247 DIPEEEAVCRICLVELGEGGDMFKLE--CSCKGELALAHKECAVKWFTI--KGNKTCDVCK 303 (403)
Q Consensus 247 d~~eee~~CrICl~e~~e~~~~l~lP--C~CkGslh~fH~~CL~~WL~~--kg~~tCplCr 303 (403)
+..++..-|-||-.-. .+++++|= |+ ..++|.+||+.=|.+ -+-.+|+-|-
T Consensus 210 ~~~~E~~~C~IC~~~D--pEdVLLLCDsCN----~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 210 GLSQEEVKCDICTVHD--PEDVLLLCDSCN----KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred CcccccccceeeccCC--hHHhheeecccc----cceeeccccCcccccccccceecCcch
Confidence 3345567799996443 33444433 66 256999999984422 1347899995
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=5.1 Score=40.82 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
-...|-||...|.. ..+..|. |+|-..|..+=++. ...|.||.+....+
T Consensus 240 ~Pf~c~icr~~f~~---pVvt~c~-----h~fc~~ca~~~~qk--~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 240 LPFKCFICRKYFYR---PVVTKCG-----HYFCEVCALKPYQK--GEKCYVCSQQTHGS 288 (313)
T ss_pred CCcccccccccccc---chhhcCC-----ceeehhhhcccccc--CCcceecccccccc
Confidence 35679999987754 5677899 99999999988876 78999999876643
No 84
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=59.55 E-value=4.4 Score=40.80 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=35.1
Q ss_pred cceecccCcCCCC-ceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccc
Q 015667 254 VCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (403)
Q Consensus 254 ~CrICl~e~~e~~-~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~ 304 (403)
.|.||.+.+.... .+..++|+ |+.|..|+..-... +-+||+|..
T Consensus 160 ncPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcc-----cchHHHHHHHHhcc--CCCCCcccc
Confidence 3999987654433 45678999 99999998888776 599999998
No 85
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.35 E-value=5.7 Score=42.15 Aligned_cols=53 Identities=26% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc--C----Cccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--G----NKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k--g----~~tCplCr~~~~~~ 309 (403)
--.|-||+++.........+||. |+|-+.|+..++.+- + .-.||-|+..=...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~-----Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~ 242 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCS-----HVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAP 242 (445)
T ss_pred cccceeeehhhcCcceeeecccc-----hHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCC
Confidence 47899999876433567789999 999999999998653 1 35688877654433
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.98 E-value=4.6 Score=46.15 Aligned_cols=44 Identities=20% Similarity=0.524 Sum_probs=33.3
Q ss_pred CcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..|.+|-..++- +.+ .-|. |.||++|+. .+...||-|+-++++.
T Consensus 841 skCs~C~~~Ldl---P~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDL---PFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCcccc---ceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhh
Confidence 479999665543 344 4499 999999988 3367999999988765
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=6.9 Score=37.57 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=32.9
Q ss_pred CCCcceecccCcCCCCce-----EEecCCCCCcCceecHhhHHHHHhhc----C-----Cccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDM-----FKLECSCKGELALAHKECAVKWFTIK----G-----NKTCDVCKQDVQ 307 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~-----l~lPC~CkGslh~fH~~CL~~WL~~k----g-----~~tCplCr~~~~ 307 (403)
+-..|.||.. |.-++.. -...|+ +-||+-||..||+.- . -..||.|...+.
T Consensus 164 ~~~~cgicya-yqldGTipDqtCdN~qCg-----kpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 164 ELGACGICYA-YQLDGTIPDQTCDNIQCG-----KPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhcccceee-eecCCccccccccccccC-----CcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4467999973 3222211 134588 899999999998541 1 146999986654
No 88
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=58.52 E-value=8.1 Score=45.30 Aligned_cols=51 Identities=25% Similarity=0.529 Sum_probs=33.7
Q ss_pred CCcceecccCc--CCCCceEEecCCCCCcC-ceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVEL--GEGGDMFKLECSCKGEL-ALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~--~e~~~~l~lPC~CkGsl-h~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
+..|.||-++. ..++++. .-|+ +- --+-+.|.+-=.+ .|+..||.||+.|.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~F-VAC~---eC~FPVCrpCYEYEr~-eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPF-VACD---VCAFPVCRPCYEYERK-DGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEE-EEec---cCCCccccchhhhhhh-cCCccCCccCCchh
Confidence 45899997764 3334444 3444 00 3388899843333 48999999999998
No 89
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=56.89 E-value=5.8 Score=39.37 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=27.4
Q ss_pred ecCCCCCcC-ceecHhhHHHHHhhcCCcccccccccc
Q 015667 271 LECSCKGEL-ALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 271 lPC~CkGsl-h~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
..|-|.+-- .|||..|+--=..-+|...|+-|+..-
T Consensus 233 i~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 233 IGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 357777665 899999976444556889999998654
No 90
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.72 E-value=6.2 Score=44.82 Aligned_cols=41 Identities=27% Similarity=0.765 Sum_probs=27.7
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV 301 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCpl 301 (403)
-+|.||.... .+.......|. |..|..|.+.||.. ...||-
T Consensus 1029 ~~C~~C~l~V-~gss~~Cg~C~-----Hv~H~sc~~eWf~~--gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAV-RGSSNFCGTCG-----HVGHTSCMMEWFRT--GDVCPS 1069 (1081)
T ss_pred eeeeeEeeEe-eccchhhcccc-----ccccHHHHHHHHhc--CCcCCC
Confidence 4477775433 12233455677 99999999999998 447763
No 91
>PLN02189 cellulose synthase
Probab=56.07 E-value=9.6 Score=44.57 Aligned_cols=51 Identities=31% Similarity=0.753 Sum_probs=34.8
Q ss_pred CCcceecccCcC--CCCceEEecCC-CCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELG--EGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~--e~~~~l~lPC~-CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
...|.||-++.+ +.++.. ..|+ |. --+-+.|.+ .=+..|+..||.||+.|.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEE-EeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 347999987754 334443 4565 20 238889984 334458999999999998
No 92
>PLN02436 cellulose synthase A
Probab=55.61 E-value=8.9 Score=44.98 Aligned_cols=51 Identities=27% Similarity=0.667 Sum_probs=34.4
Q ss_pred CCcceecccCc--CCCCceEEecCC-CCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVEL--GEGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~--~e~~~~l~lPC~-CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
...|.||-++. ..++++. .-|+ |. --+-+.|.+ .=+..|+..||.||+.|.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEE-EeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 45899998764 3334443 4555 10 338889984 334458999999999998
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.54 E-value=10 Score=36.36 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=27.7
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceec-HhhHHHHHhhcCCcccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAH-KECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH-~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
..|+.|.+. +..++.+||. |+.| ..|-.. -..||+|+...
T Consensus 159 ~~Cr~C~~~---~~~VlllPCr-----Hl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 159 RSCRKCGER---EATVLLLPCR-----HLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred ccceecCcC---CceEEeeccc-----ceEeccccccc------CccCCCCcChh
Confidence 339999754 3458999999 8855 557433 35799998554
No 94
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.05 E-value=15 Score=37.35 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
+...+|.+|-+. +..+.. .+|. |.+-..|+.+=+...-.-+||.|+.++..+
T Consensus 237 t~~~~C~~Cg~~---PtiP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEP---PTIPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCC---CCCCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 456779999643 233444 4599 999999999877654456999999887744
No 95
>PLN02195 cellulose synthase A
Probab=52.66 E-value=13 Score=43.25 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=33.6
Q ss_pred CCcceecccCc--CCCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVEL--GEGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~--~e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
...|.||-++. ...+++.+ ..|. --+-+.|.+-= +..|+..||.||..|.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCyeye-r~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLEYE-IKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCC-----Cccccchhhhh-hhcCCccCCccCCccc
Confidence 45799997654 33334443 2354 44888998433 3348999999999998
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.31 E-value=40 Score=34.01 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCcceecccCcCCCCceE-EecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 251 EEAVCRICLVELGEGGDMF-KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 251 ee~~CrICl~e~~e~~~~l-~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.-..|.||.+.+.....-. .-||. |.|-.+|+.+.+.. ...||+|.....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg-----~Vv~~ecvEklir~--D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSG-----HVVTKECVEKLIRK--DMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCC-----cEeeHHHHHHhccc--cccccCCCCcCc
Confidence 3578999998886544333 45699 99999999999776 899999998775
No 97
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=49.81 E-value=5.5 Score=32.18 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=21.6
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
.-.|.+|..-+.+ .+....|. |.|-..|+..-+. ..||+|+.+..
T Consensus 7 lLrCs~C~~~l~~--pv~l~~Ce-----H~fCs~Ci~~~~~----~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKE--PVCLGGCE-----HIFCSSCIRDCIG----SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS-------B-TTTGGGGTT----TB-SSS--B-S
T ss_pred hcCCcHHHHHhcC--CceeccCc-----cHHHHHHhHHhcC----CCCCCcCChHH
Confidence 3469999865543 24455699 9999999977544 35999997664
No 98
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=11 Score=39.69 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=40.4
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
.|+..|.||.... -+....||+ |---..||.+-+.. +..|=.||..+..
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~-----H~SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCS-----HRSCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccCCC-----CchHHHHHHHHHhc--CCeeeEecceeee
Confidence 4567899997543 346788999 99999999999887 7899999998874
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=47.95 E-value=11 Score=39.38 Aligned_cols=52 Identities=21% Similarity=0.552 Sum_probs=40.9
Q ss_pred CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
.++...|.||+.-..+. .....|. |.|=..|+..|+.. +..||.|+++....
T Consensus 18 ~~~~l~C~~C~~vl~~p--~~~~~cg-----h~fC~~C~~~~~~~--~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP--VQTTTCG-----HRFCAGCLLESLSN--HQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCC--CCCCCCC-----Ccccccccchhhcc--CcCCcccccccchh
Confidence 35567899998766542 2225899 99999999999998 89999998776543
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.89 E-value=8.6 Score=44.15 Aligned_cols=36 Identities=19% Similarity=0.490 Sum_probs=27.1
Q ss_pred CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHH
Q 015667 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWF 291 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL 291 (403)
+-.+.|.+|.--+.. ..-.+.||. |.||.+||.+=.
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~Cg-----H~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCG-----HCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhc-Ccceeeecc-----chHHHHHHHHHH
Confidence 336789999765532 345678899 999999998764
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02400 cellulose synthase
Probab=46.51 E-value=13 Score=43.69 Aligned_cols=50 Identities=28% Similarity=0.590 Sum_probs=33.6
Q ss_pred CCcceecccCc--CCCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 252 EAVCRICLVEL--GEGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 252 e~~CrICl~e~--~e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
+..|.||-++. .+++++.+ ..|. --+-+.|.+-= +.-|+..||.||..|.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYEYE-RkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYEYE-RKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCC-----Cccccchhhee-cccCCccCcccCCccc
Confidence 45899997764 34444443 3354 34788897432 3348999999999998
No 103
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.21 E-value=19 Score=42.32 Aligned_cols=51 Identities=29% Similarity=0.590 Sum_probs=34.1
Q ss_pred CCCcceecccCcC--CCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 251 ee~~CrICl~e~~--e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
....|.||-++.+ .++++.+ ..|. --+-+.|.+-= ...|+..||.||+.|.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cyeye-~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYEYE-RSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhhhh-hhcCCccCCccCCchh
Confidence 4568999976643 3344442 2244 33888898433 3348999999999998
No 104
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.47 E-value=9 Score=39.23 Aligned_cols=44 Identities=27% Similarity=0.691 Sum_probs=30.4
Q ss_pred CCcceecccCcCCCCceEEecCCCCCcCcee-cHhhHHHHHhhcCCccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLECSCKGELALA-HKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~f-H~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
...|+|||+--- +-..|+|. |.+ -.+|= |.-+.|||||+.++.+
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCG-----HmVtCt~CG------krm~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECG-----HMVTCTKCG------KRMNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecC-----cEEeehhhc------cccccCchHHHHHHHH
Confidence 678999996543 35789999 875 34452 2235899999877643
No 105
>PF04641 Rtf2: Rtf2 RING-finger
Probab=41.88 E-value=32 Score=33.70 Aligned_cols=53 Identities=15% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCCCCcceecccCcCCCCce-EEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~-l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
.+....|.|...++...-.. .+.+|+ |.|-..+|.+-- ....||+|...|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG-----~V~s~~alke~k---~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCG-----CVFSEKALKELK---KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCC-----CEeeHHHHHhhc---ccccccccCCccccC
Confidence 35567899998887432223 345799 899999999872 256899999999844
No 106
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=41.45 E-value=14 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=31.8
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~ 308 (403)
..|..|... +....++||. |++=..|.+-| +-+-||+|+..|..
T Consensus 8 ~~~~~~~~~---~~~~~~~pCg-----H~I~~~~f~~~----rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCG-----HLICDNCFPGE----RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccccc-----ceeeccccChh----hccCCCCCCCcccC
Confidence 346666533 2345789999 99999996665 24689999988763
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=14 Score=37.86 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=24.3
Q ss_pred eecHhhHHHHHhhc-----------CCccccccccccccccc
Q 015667 281 LAHKECAVKWFTIK-----------GNKTCDVCKQDVQNLPV 311 (403)
Q Consensus 281 ~fH~~CL~~WL~~k-----------g~~tCplCr~~~~~~pv 311 (403)
..-++||-+||..+ |+.+||.||..|-..-+
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 45679999999654 56899999999886633
No 108
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=36.84 E-value=15 Score=26.56 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=26.0
Q ss_pred cceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh----cCCccccccc
Q 015667 254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI----KGNKTCDVCK 303 (403)
Q Consensus 254 ~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~----kg~~tCplCr 303 (403)
.|.||.... +++..+. -.|. .+||..|+..=... .+...|+.|+
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~-----~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCN-----RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTS-----CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCC-----hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 378887633 2233333 3477 99999997644321 1256777775
No 109
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=36.75 E-value=6.3 Score=39.85 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=30.5
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK 294 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k 294 (403)
.+|.+|++++..+...-...|.| .+|..|+..|+++.
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLP-----VFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccc-----cccccccccccccc
Confidence 48999999997655566677885 89999999999873
No 110
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=35.25 E-value=16 Score=39.34 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=36.8
Q ss_pred CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhc------CCccccccccccccc
Q 015667 250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIK------GNKTCDVCKQDVQNL 309 (403)
Q Consensus 250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~k------g~~tCplCr~~~~~~ 309 (403)
....+|.+|.+......+ +++. |+| ..+||+.|-..-.+.. ....|.+|...-..+
T Consensus 166 ~~n~qc~vC~~g~~~~~N-rmlqC~~C---~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGN-RMLQCDKC---RQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred cccceeeeeecCCcCccc-eeeeeccc---ccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 345569999976654445 5666 333 2799999977654321 246899998765544
No 111
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=34.50 E-value=19 Score=40.36 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEecCCCCCcCceecHhhHHHHHhhc
Q 015667 269 FKLECSCKGELALAHKECAVKWFTIK 294 (403)
Q Consensus 269 l~lPC~CkGslh~fH~~CL~~WL~~k 294 (403)
+.+-|.|.| .++|..|+.-|+.+.
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~ 57 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHA 57 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHH
Confidence 344488777 799999999999775
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=31.63 E-value=16 Score=36.62 Aligned_cols=53 Identities=17% Similarity=0.426 Sum_probs=39.7
Q ss_pred CCCCcceecccC-cCCCC-ceEEec-CCCCCcCceecHhhHHHHHhhcCCcccc--cccccccc
Q 015667 250 EEEAVCRICLVE-LGEGG-DMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCD--VCKQDVQN 308 (403)
Q Consensus 250 eee~~CrICl~e-~~e~~-~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCp--lCr~~~~~ 308 (403)
.++..|.||..+ |-.++ ..++.| |- |-.-..|+++-|.. |-..|| -|..-++.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECy-----HrmCESCvdRIFs~-GpAqCP~~gC~kILRK 65 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECY-----HRMCESCVDRIFSR-GPAQCPYKGCGKILRK 65 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHH-----HHHHHHHHHHHhcC-CCCCCCCccHHHHHHH
Confidence 345689999865 43333 345677 88 88889999999985 789999 89876653
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=43 Score=32.76 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=38.3
Q ss_pred CcceecccCcCCCC---ceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667 253 AVCRICLVELGEGG---DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 253 ~~CrICl~e~~e~~---~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
..|-||-++|..++ .++.+-|+ |.+=+.|+.+-+.. +...||-||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~-----h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCG-----HTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccC-----ceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 46999999987553 34677799 99999999888765 467889999875
No 114
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=47 Score=34.60 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=38.9
Q ss_pred cCCCCCCCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667 243 EAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (403)
Q Consensus 243 ~~~ed~~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~ 306 (403)
++.+..+.+...|.||+-.- ..||-|--+=..|-..|+.+.+.. ...||+=++..
T Consensus 291 se~e~l~~~~~~CpvClk~r-------~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~ 345 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKR-------QNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPA 345 (357)
T ss_pred cccccCCCccccChhHHhcc-------CCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcc
Confidence 34455566678899998543 344444333367999999999997 88999877654
No 115
>PRK05978 hypothetical protein; Provisional
Probab=28.83 E-value=24 Score=32.49 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=16.3
Q ss_pred HHHhhcCCccccccccccccc
Q 015667 289 KWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 289 ~WL~~kg~~tCplCr~~~~~~ 309 (403)
.+|+. +..|+.|+.+|...
T Consensus 47 g~Lkv--~~~C~~CG~~~~~~ 65 (148)
T PRK05978 47 AFLKP--VDHCAACGEDFTHH 65 (148)
T ss_pred ccccc--CCCccccCCccccC
Confidence 67787 89999999999865
No 116
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.41 E-value=18 Score=24.10 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 015667 296 NKTCDVCKQDVQ 307 (403)
Q Consensus 296 ~~tCplCr~~~~ 307 (403)
...||.|+++|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 567888887764
No 117
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.94 E-value=55 Score=33.21 Aligned_cols=18 Identities=33% Similarity=0.829 Sum_probs=14.5
Q ss_pred ecHhhHHHHHhhcCCcccc
Q 015667 282 AHKECAVKWFTIKGNKTCD 300 (403)
Q Consensus 282 fH~~CL~~WL~~kg~~tCp 300 (403)
=|++|+.+|.-+- |..||
T Consensus 57 GHrdCFEK~HlIa-nQ~~p 74 (285)
T PF06937_consen 57 GHRDCFEKYHLIA-NQDCP 74 (285)
T ss_pred chHHHHHHHHHHH-cCCCC
Confidence 5999999998663 66777
No 118
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=24.22 E-value=40 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.452 Sum_probs=22.3
Q ss_pred EecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667 270 KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (403)
Q Consensus 270 ~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~ 307 (403)
...|+ -||.-..||..-|.. ...||+|++++.
T Consensus 15 Li~C~----dHYLCl~CLt~ml~~--s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCS----DHYLCLNCLTLMLSR--SDRCPICGKPLP 46 (50)
T ss_dssp EEE-S----S-EEEHHHHHHT-SS--SSEETTTTEE--
T ss_pred eeeec----chhHHHHHHHHHhcc--ccCCCcccCcCc
Confidence 34576 399999999988877 789999998754
No 119
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.17 E-value=19 Score=32.80 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=26.6
Q ss_pred EEecCCCCCcCceecHhhHHHHHhhcCCcccccccc
Q 015667 269 FKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (403)
Q Consensus 269 l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~ 304 (403)
..|+|+|. .|+|.+|-..+|.++|...|---+.
T Consensus 33 IDL~CGCS---yyihinC~~hGFTHRGthhCsS~~E 65 (134)
T PF01440_consen 33 IDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSRE 65 (134)
T ss_pred cccCCCCE---EEeecccCCCCcCCCcCccCCCcCc
Confidence 45888883 5799999999999999888876653
No 120
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=22.29 E-value=52 Score=30.26 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=33.6
Q ss_pred CCcceecccCcCCCCceEEec--CCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 252 EAVCRICLVELGEGGDMFKLE--CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 252 e~~CrICl~e~~e~~~~l~lP--C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
--+|-||.+.-. |+...-| |- |. ..=-.-|+.-|-.-.-...||+||..|...
T Consensus 80 lYeCnIC~etS~--ee~FLKPneCC--gY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSA--EERFLKPNECC--GY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccc--hhhcCCccccc--ch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 456999985432 2344445 33 21 223344678887665678999999999754
No 121
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=22.03 E-value=40 Score=39.84 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=32.8
Q ss_pred CCCCCcceecccCcCCCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCccccccccc
Q 015667 249 PEEEAVCRICLVELGEGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305 (403)
Q Consensus 249 ~eee~~CrICl~e~~e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~ 305 (403)
.+++..|.||++...+.-+..+ -.|+ -++|++|...=+...|...|--|-+.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cn-----l~VHq~Cygi~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCN-----LAVHQECYGIPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCc-----chhhhhccCCCCCCCCcEeehhhccC
Confidence 3567899999976655333332 2366 89999998832223355666666544
No 122
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=21.76 E-value=73 Score=38.17 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCCCCCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhh--cCCccccccccccccccccccccCCCcccc
Q 015667 247 DIPEEEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDVQNLPVTLLKIHNPQTVI 323 (403)
Q Consensus 247 d~~eee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~~~~pv~~~~~~~~~~~~ 323 (403)
...+-++.||+|..... .+.. .|. +.+|-+|+..=+.. +....|++|+..-+|-.+.....+.-+...
T Consensus 339 ~~~~~ddhcrf~~d~~~----~lc~Et~p-----rvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~ 409 (1414)
T KOG1473|consen 339 GEIEYDDHCRFCHDLGD----LLCCETCP-----RVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDS 409 (1414)
T ss_pred cceeecccccccCcccc----eeecccCC-----ceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccc
Confidence 33455789999985421 2222 266 77888887655433 235679999866555434222122222223
Q ss_pred CCCcchhhccccceeecceeeeee-e----ccc--chhhHHHHHHHHhc-----ccccCccccccc-ccccccc
Q 015667 324 RRPQTIVQQREVARYRNFSCISGI-R----LGC--SCSCHFVAFLLCFG-----SPFFNDRFYHGE-QELHMGL 384 (403)
Q Consensus 324 rr~~~~~~q~e~~~yrvw~~vP~i-~----l~~--~~~plfvA~~lliG-----G~~l~~~fyh~e-~~~~~g~ 384 (403)
.|-.+....+....|++-..-=+| . +.| +..|.+--++-||+ .++.++.+|.+| ...+||+
T Consensus 410 iR~~~iG~dr~gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~l 483 (1414)
T KOG1473|consen 410 IRHTPIGRDRYGRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGL 483 (1414)
T ss_pred eeccCCCcCccccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccc
Confidence 344555544444445444222222 1 111 33445555556777 334555444332 3344554
No 123
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=21.34 E-value=45 Score=37.49 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=37.1
Q ss_pred CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (403)
Q Consensus 253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~ 309 (403)
..|.||++ .+...+.+|. |.|=.+|+.+-+......-|++|+......
T Consensus 455 ~~c~ic~~----~~~~~it~c~-----h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCG-----HDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeeccc-----chHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 67999986 3457788899 877777777777666566899999877644
Done!