Query         015667
Match_columns 403
No_of_seqs    254 out of 1217
Neff          4.3 
Searched_HMMs 29240
Date          Mon Mar 25 16:35:56 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015667hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2d8s_A Cellular modulator of i  99.7 3.4E-17 1.2E-21  131.6   5.4   60  249-309    12-71  (80)
  2 1vyx_A ORF K3, K3RING; zinc-bi  99.6 7.5E-17 2.6E-21  123.2   3.1   56  250-308     4-59  (60)
  3 1x4j_A Ring finger protein 38;  99.2 2.1E-11 7.2E-16   94.2   5.5   51  250-307    21-71  (75)
  4 2kiz_A E3 ubiquitin-protein li  99.2 2.8E-11 9.5E-16   91.8   6.0   54  249-309    11-64  (69)
  5 2ep4_A Ring finger protein 24;  99.1 5.8E-11   2E-15   91.1   6.4   53  250-309    13-65  (74)
  6 1iym_A EL5; ring-H2 finger, ub  99.1 2.8E-11 9.6E-16   87.8   3.5   51  250-307     3-54  (55)
  7 2l0b_A E3 ubiquitin-protein li  99.1 4.8E-11 1.6E-15   96.2   4.9   51  250-307    38-88  (91)
  8 2ect_A Ring finger protein 126  99.1 6.6E-11 2.3E-15   91.7   4.7   53  250-309    13-65  (78)
  9 2ecl_A Ring-box protein 2; RNF  99.0 1.8E-10   6E-15   91.3   4.5   50  252-308    15-76  (81)
 10 1v87_A Deltex protein 2; ring-  99.0 3.5E-10 1.2E-14   93.5   6.2   54  252-310    25-96  (114)
 11 2ecm_A Ring finger and CHY zin  98.9 5.7E-10   2E-14   80.6   4.4   50  251-307     4-54  (55)
 12 3dpl_R Ring-box protein 1; ubi  98.9 1.1E-09 3.9E-14   91.9   5.3   50  252-308    37-101 (106)
 13 2ea6_A Ring finger protein 4;   98.8 1.9E-09 6.6E-14   80.7   4.5   51  250-307    13-67  (69)
 14 3ng2_A RNF4, snurf, ring finge  98.8 1.8E-09 6.2E-14   81.6   3.0   52  250-308     8-63  (71)
 15 2ct2_A Tripartite motif protei  98.8 7.5E-09 2.6E-13   81.1   6.3   54  250-308    13-68  (88)
 16 2d8t_A Dactylidin, ring finger  98.8 6.3E-09 2.2E-13   79.5   4.7   49  250-308    13-61  (71)
 17 1chc_A Equine herpes virus-1 r  98.7 7.1E-09 2.4E-13   78.0   4.6   51  250-309     3-53  (68)
 18 2xeu_A Ring finger protein 4;   98.7 4.7E-09 1.6E-13   77.4   2.9   51  251-308     2-56  (64)
 19 2ecn_A Ring finger protein 141  98.7 5.3E-09 1.8E-13   79.3   2.9   48  250-308    13-60  (70)
 20 4a0k_B E3 ubiquitin-protein li  98.7 2.2E-09 7.5E-14   92.1   0.5   50  252-308    48-112 (117)
 21 2csy_A Zinc finger protein 183  98.7   2E-08 6.7E-13   78.5   5.8   48  250-307    13-60  (81)
 22 2yur_A Retinoblastoma-binding   98.7 1.5E-08 5.2E-13   78.3   5.0   50  250-307    13-63  (74)
 23 2ysl_A Tripartite motif-contai  98.7 2.7E-08 9.3E-13   75.6   5.9   51  250-308    18-69  (73)
 24 2djb_A Polycomb group ring fin  98.6 3.3E-08 1.1E-12   75.7   5.0   49  250-308    13-62  (72)
 25 2ct0_A Non-SMC element 1 homol  98.6 2.2E-08 7.6E-13   79.7   3.8   53  250-309    13-65  (74)
 26 3ztg_A E3 ubiquitin-protein li  98.5 8.7E-08   3E-12   76.2   5.1   51  249-307    10-61  (92)
 27 2ecy_A TNF receptor-associated  98.5 4.9E-08 1.7E-12   73.4   3.4   49  250-307    13-61  (66)
 28 2ecw_A Tripartite motif-contai  98.5 1.3E-07 4.6E-12   72.9   5.9   51  250-308    17-71  (85)
 29 2ysj_A Tripartite motif-contai  98.5 1.8E-07 6.2E-12   69.5   6.2   45  250-302    18-63  (63)
 30 1t1h_A Gspef-atpub14, armadill  98.5 1.6E-07 5.3E-12   72.6   5.3   50  250-308     6-55  (78)
 31 2ecj_A Tripartite motif-contai  98.5 1.2E-07   4E-12   68.9   4.1   45  250-302    13-58  (58)
 32 2ecv_A Tripartite motif-contai  98.5 1.6E-07 5.6E-12   72.4   5.0   51  250-308    17-71  (85)
 33 4ayc_A E3 ubiquitin-protein li  98.4 5.6E-08 1.9E-12   83.6   2.4   48  252-309    53-100 (138)
 34 4ap4_A E3 ubiquitin ligase RNF  98.4   9E-08 3.1E-12   79.4   2.9   54  250-310     5-62  (133)
 35 4ap4_A E3 ubiquitin ligase RNF  98.3 2.7E-07 9.1E-12   76.5   3.9   52  250-308    70-125 (133)
 36 2egp_A Tripartite motif-contai  98.3   9E-08 3.1E-12   73.6   0.8   51  250-308    10-65  (79)
 37 2y43_A E3 ubiquitin-protein li  98.3 2.6E-07 8.8E-12   74.7   3.1   48  251-308    21-69  (99)
 38 3lrq_A E3 ubiquitin-protein li  98.3 2.6E-07   9E-12   75.4   2.9   49  250-307    20-69  (100)
 39 2ckl_A Polycomb group ring fin  98.3 4.9E-07 1.7E-11   74.2   3.8   48  251-308    14-62  (108)
 40 1g25_A CDK-activating kinase a  98.2 4.9E-07 1.7E-11   67.7   3.0   50  252-307     3-54  (65)
 41 3fl2_A E3 ubiquitin-protein li  98.2   1E-06 3.4E-11   74.1   4.1   49  251-308    51-99  (124)
 42 2ckl_B Ubiquitin ligase protei  98.2 1.1E-06 3.6E-11   77.3   4.2   48  251-307    53-101 (165)
 43 1jm7_A BRCA1, breast cancer ty  98.0 1.7E-06 5.8E-11   70.6   2.5   49  252-308    21-70  (112)
 44 3hct_A TNF receptor-associated  98.0 3.6E-06 1.2E-10   70.3   4.4   50  250-308    16-65  (118)
 45 3l11_A E3 ubiquitin-protein li  98.0 7.7E-07 2.6E-11   73.7  -0.0   50  250-308    13-62  (115)
 46 1z6u_A NP95-like ring finger p  98.0 3.9E-06 1.3E-10   73.7   3.9   49  251-308    77-125 (150)
 47 1rmd_A RAG1; V(D)J recombinati  98.0 3.3E-06 1.1E-10   70.0   3.2   49  251-308    22-70  (116)
 48 3k1l_B Fancl; UBC, ring, RWD,   98.0 2.8E-06 9.7E-11   85.3   3.4   53  250-307   306-372 (381)
 49 1e4u_A Transcriptional repress  97.9 8.9E-06   3E-10   64.5   4.4   55  250-311     9-65  (78)
 50 2vje_B MDM4 protein; proto-onc  97.9   8E-06 2.7E-10   61.8   3.7   51  249-309     4-57  (63)
 51 2y1n_A E3 ubiquitin-protein li  97.9 5.3E-06 1.8E-10   84.0   3.4   49  252-309   332-380 (389)
 52 2vje_A E3 ubiquitin-protein li  97.8 1.1E-05 3.7E-10   61.2   3.5   49  251-309     7-58  (64)
 53 1bor_A Transcription factor PM  97.8 2.6E-06 8.8E-11   62.8  -0.1   46  250-308     4-49  (56)
 54 2kr4_A Ubiquitin conjugation f  97.8 2.9E-05 9.8E-10   62.0   5.5   49  250-308    12-60  (85)
 55 3knv_A TNF receptor-associated  97.7 1.3E-05 4.6E-10   69.7   2.6   50  249-307    28-77  (141)
 56 2kre_A Ubiquitin conjugation f  97.7 6.4E-05 2.2E-09   62.1   6.4   49  250-308    27-75  (100)
 57 4ic3_A E3 ubiquitin-protein li  97.7 7.8E-06 2.7E-10   63.4   0.4   45  251-309    23-68  (74)
 58 1jm7_B BARD1, BRCA1-associated  97.6   9E-06 3.1E-10   67.8   0.2   45  251-307    21-66  (117)
 59 1wgm_A Ubiquitin conjugation f  97.4 0.00023 7.9E-09   58.5   6.2   50  250-308    20-69  (98)
 60 3hcs_A TNF receptor-associated  97.4 0.00011 3.9E-09   64.5   4.1   51  249-308    15-65  (170)
 61 2c2l_A CHIP, carboxy terminus   97.3  0.0002 6.7E-09   66.1   5.3   49  250-307   206-254 (281)
 62 2ea5_A Cell growth regulator w  97.3  0.0002 6.7E-09   55.1   3.9   47  249-309    12-59  (68)
 63 2ecg_A Baculoviral IAP repeat-  97.2 2.6E-05   9E-10   60.3  -1.7   44  251-308    24-68  (75)
 64 1wim_A KIAA0161 protein; ring   97.2 0.00019 6.6E-09   57.5   3.3   50  251-306     4-62  (94)
 65 2yu4_A E3 SUMO-protein ligase   97.1 0.00051 1.7E-08   55.5   5.2   48  250-305     5-59  (94)
 66 2f42_A STIP1 homology and U-bo  96.8 0.00085 2.9E-08   61.3   4.6   50  250-308   104-153 (179)
 67 3nw0_A Non-structural maintena  96.8   0.001 3.6E-08   62.8   4.8   51  252-309   180-230 (238)
 68 3htk_C E3 SUMO-protein ligase   96.6  0.0015   5E-08   63.4   4.4   51  250-307   179-231 (267)
 69 3t6p_A Baculoviral IAP repeat-  96.6 0.00055 1.9E-08   68.1   1.2   46  250-309   293-339 (345)
 70 2yho_A E3 ubiquitin-protein li  96.5 0.00059   2E-08   53.8   0.6   45  251-309    17-62  (79)
 71 2bay_A PRE-mRNA splicing facto  96.0  0.0043 1.5E-07   46.9   3.4   46  253-308     4-50  (61)
 72 2lri_C Autoimmune regulator; Z  94.4   0.026 8.9E-07   43.6   3.1   52  248-308     8-62  (66)
 73 3vk6_A E3 ubiquitin-protein li  93.5    0.05 1.7E-06   45.8   3.6   47  255-309     4-50  (101)
 74 2l43_A N-teminal domain from h  85.5    0.29 9.8E-06   39.6   1.5   54  250-306    23-76  (88)
 75 1wev_A Riken cDNA 1110020M19;   85.0   0.087   3E-06   42.5  -1.8   54  250-308    14-75  (88)
 76 2l5u_A Chromodomain-helicase-D  84.3    0.55 1.9E-05   35.2   2.5   47  250-305     9-58  (61)
 77 2ku3_A Bromodomain-containing   83.9    0.29   1E-05   38.2   0.9   51  250-305    14-66  (71)
 78 2yt5_A Metal-response element-  83.1    0.23   8E-06   37.3  -0.0   52  249-305     3-61  (66)
 79 2k16_A Transcription initiatio  83.1    0.24 8.3E-06   38.2   0.1   52  250-307    16-70  (75)
 80 1weu_A Inhibitor of growth fam  82.8    0.66 2.3E-05   38.0   2.6   51  249-305    33-85  (91)
 81 2ysm_A Myeloid/lymphoid or mix  79.2    0.56 1.9E-05   38.6   1.0   49  250-303     5-55  (111)
 82 2lbm_A Transcriptional regulat  78.9     1.8   6E-05   38.2   4.1   46  250-304    61-116 (142)
 83 3u5n_A E3 ubiquitin-protein li  78.5    0.44 1.5E-05   43.4   0.1   49  250-306     5-55  (207)
 84 1wen_A Inhibitor of growth fam  78.2     1.2   4E-05   34.7   2.5   48  249-305    13-65  (71)
 85 2lv9_A Histone-lysine N-methyl  77.9     0.8 2.7E-05   37.5   1.5   47  251-304    27-75  (98)
 86 3o36_A Transcription intermedi  74.6     0.7 2.4E-05   41.2   0.3   47  251-306     3-52  (184)
 87 1f62_A Transcription factor WS  73.7     1.1 3.9E-05   31.9   1.2   46  253-304     1-49  (51)
 88 3ql9_A Transcriptional regulat  72.8     3.5 0.00012   35.8   4.3   47  250-304    55-110 (129)
 89 2e6r_A Jumonji/ARID domain-con  70.9    0.51 1.7E-05   38.3  -1.3   51  250-306    14-67  (92)
 90 1we9_A PHD finger family prote  70.1     2.6 8.9E-05   31.3   2.5   52  249-305     3-58  (64)
 91 1wep_A PHF8; structural genomi  68.3     3.8 0.00013   31.9   3.2   51  250-306    10-64  (79)
 92 1weo_A Cellulose synthase, cat  67.6     4.6 0.00016   33.4   3.7   51  252-308    16-70  (93)
 93 4gne_A Histone-lysine N-methyl  66.9     2.8 9.5E-05   35.2   2.3   47  249-303    12-60  (107)
 94 2ri7_A Nucleosome-remodeling f  66.6     1.4 4.7E-05   38.7   0.4   51  250-306     6-60  (174)
 95 2yql_A PHD finger protein 21A;  66.3    0.92 3.2E-05   33.3  -0.7   47  249-304     6-55  (56)
 96 1wem_A Death associated transc  65.8     5.5 0.00019   30.6   3.7   49  251-306    15-71  (76)
 97 1mm2_A MI2-beta; PHD, zinc fin  65.5    0.98 3.3E-05   33.9  -0.7   47  250-305     7-56  (61)
 98 2kwj_A Zinc finger protein DPF  60.3     2.9  0.0001   34.8   1.3   34  253-291     2-42  (114)
 99 1fp0_A KAP-1 corepressor; PHD   60.1     3.6 0.00012   33.5   1.7   47  250-305    23-72  (88)
100 2vpb_A Hpygo1, pygopus homolog  57.2     6.4 0.00022   30.0   2.6   33  250-287     6-40  (65)
101 1xwh_A Autoimmune regulator; P  56.4     1.8 6.2E-05   32.7  -0.6   46  250-304     6-54  (66)
102 2ko5_A Ring finger protein Z;   56.3     5.5 0.00019   33.3   2.2   44  253-307    29-72  (99)
103 1wew_A DNA-binding family prot  55.5      11 0.00036   29.4   3.7   48  250-305    14-72  (78)
104 3v43_A Histone acetyltransfera  55.2       3  0.0001   34.5   0.5   46  254-304    63-111 (112)
105 2rsd_A E3 SUMO-protein ligase   54.4     1.7 5.9E-05   33.1  -1.1   48  250-304     8-64  (68)
106 3v43_A Histone acetyltransfera  54.2     6.1 0.00021   32.6   2.2   33  252-289     5-43  (112)
107 2puy_A PHD finger protein 21A;  53.5     1.8 6.3E-05   32.0  -1.0   47  251-306     4-53  (60)
108 2vnf_A ING 4, P29ING4, inhibit  52.3     2.3 7.7E-05   31.9  -0.7   46  250-304     8-58  (60)
109 1wil_A KIAA1045 protein; ring   48.1      10 0.00035   31.1   2.5   32  250-290    13-47  (89)
110 2jmi_A Protein YNG1, ING1 homo  45.9     2.8 9.4E-05   34.3  -1.2   49  250-304    24-75  (90)
111 1wee_A PHD finger family prote  45.1      12 0.00041   28.5   2.4   50  250-305    14-66  (72)
112 2ro1_A Transcription intermedi  44.4     3.5 0.00012   37.2  -0.8   46  252-305     2-49  (189)
113 3kv5_D JMJC domain-containing   43.1     5.4 0.00018   41.3   0.2   50  251-306    36-89  (488)
114 2xb1_A Pygopus homolog 2, B-ce  42.4      10 0.00034   31.3   1.7   50  253-307     4-63  (105)
115 3shb_A E3 ubiquitin-protein li  41.9     2.9  0.0001   33.0  -1.6   25  280-304    49-76  (77)
116 3asl_A E3 ubiquitin-protein li  39.2     4.1 0.00014   31.4  -1.1   26  280-305    41-69  (70)
117 2kgg_A Histone demethylase jar  38.0     9.1 0.00031   27.5   0.7   45  254-303     4-52  (52)
118 2jun_A Midline-1; B-BOX, TRIM,  35.7      20 0.00068   28.2   2.4   36  251-291     2-37  (101)
119 2e6s_A E3 ubiquitin-protein li  34.2     7.3 0.00025   30.6  -0.4   45  254-304    28-76  (77)
120 2kwj_A Zinc finger protein DPF  33.5     3.6 0.00012   34.2  -2.4   48  254-307    60-110 (114)
121 1x4i_A Inhibitor of growth pro  32.5     9.7 0.00033   29.3   0.1   27  280-306    30-56  (70)
122 2g6q_A Inhibitor of growth pro  32.1     4.8 0.00016   30.4  -1.7   46  250-304     9-59  (62)
123 3ask_A E3 ubiquitin-protein li  29.8      17 0.00058   34.3   1.2   47  253-305   175-225 (226)
124 3c6w_A P28ING5, inhibitor of g  29.6     5.5 0.00019   29.7  -1.7   45  251-304     8-57  (59)
125 3kqi_A GRC5, PHD finger protei  28.4      35  0.0012   26.1   2.6   48  252-305    10-61  (75)
126 3o70_A PHD finger protein 13;   26.8      26  0.0009   26.7   1.7   47  250-304    17-66  (68)
127 2ysm_A Myeloid/lymphoid or mix  25.7     8.8  0.0003   31.3  -1.3   46  254-305    56-104 (111)
128 3lqh_A Histone-lysine N-methyl  20.4      32  0.0011   31.1   1.2   51  252-307     2-65  (183)

No 1  
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67  E-value=3.4e-17  Score=131.56  Aligned_cols=60  Identities=27%  Similarity=0.743  Sum_probs=51.8

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      ++++..|+||++++++++ .+++||+|+|++|+||++||++||..+++.+||+||+.|...
T Consensus        12 ~~~~~~C~IC~~~~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            345678999999887544 568999999999999999999999997778999999999754


No 2  
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.63  E-value=7.5e-17  Score=123.25  Aligned_cols=56  Identities=38%  Similarity=0.805  Sum_probs=49.0

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..||||+++.+   +.+++||+|+|++++||+.||++||..+++.+||+|+++|..
T Consensus         4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            45678999998742   346799999999999999999999999889999999999874


No 3  
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18  E-value=2.1e-11  Score=94.21  Aligned_cols=51  Identities=27%  Similarity=0.749  Sum_probs=45.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++++..++.+..++|.     |.||..||.+|++.  +.+||+||+.+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence            4567899999999887778899999     99999999999987  689999998775


No 4  
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.17  E-value=2.8e-11  Score=91.76  Aligned_cols=54  Identities=37%  Similarity=0.840  Sum_probs=46.6

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      .+++..|.||++.+..++....++|+     |.||..||.+|++.  +.+||+||..+...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLIT--NKKCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHc--CCCCcCcCccccCc
Confidence            34567899999999877778899999     99999999999988  67899999888743


No 5  
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14  E-value=5.8e-11  Score=91.12  Aligned_cols=53  Identities=25%  Similarity=0.708  Sum_probs=46.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +++..|.||++++..+.....++|.     |.||..||.+|++.  +.+||+||+.+..+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEV--RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence            3456899999999887778889999     99999999999988  57999999988754


No 6  
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12  E-value=2.8e-11  Score=87.75  Aligned_cols=51  Identities=31%  Similarity=0.731  Sum_probs=44.6

Q ss_pred             CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++++.+++....++ |+     |.||..||.+|++.  +.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence            34567999999998888888898 99     99999999999987  789999998764


No 7  
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.11  E-value=4.8e-11  Score=96.18  Aligned_cols=51  Identities=31%  Similarity=0.649  Sum_probs=45.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++++..++....++|+     |.||..||.+|++.  +.+||+||+.+.
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~   88 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFP   88 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred             CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence            4567899999999888888889999     99999999999987  679999998775


No 8  
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09  E-value=6.6e-11  Score=91.67  Aligned_cols=53  Identities=25%  Similarity=0.684  Sum_probs=46.2

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +++..|.||++++..+.....++|.     |.||..||.+|++.  +.+||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTT--TCSCTTTCCCCCCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHc--CCcCcCcCCccCCc
Confidence            4567899999999877777889999     99999999999986  68999999988743


No 9  
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02  E-value=1.8e-10  Score=91.32  Aligned_cols=50  Identities=26%  Similarity=0.553  Sum_probs=39.0

Q ss_pred             CCcceecccCcC-----------CCCceEEec-CCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          252 EAVCRICLVELG-----------EGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       252 e~~CrICl~e~~-----------e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++.|.||++++.           .++.+..++ |.     |.||.+||++||+.  +.+||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcch
Confidence            345777776664           344466666 99     99999999999998  6799999998764


No 10 
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.01  E-value=3.5e-10  Score=93.49  Aligned_cols=54  Identities=24%  Similarity=0.405  Sum_probs=42.6

Q ss_pred             CCcceecccCcCCCC---------------ceEEecCCCCCcCceecHhhHHHHHhh---cCCcccccccccccccc
Q 015667          252 EAVCRICLVELGEGG---------------DMFKLECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDVQNLP  310 (403)
Q Consensus       252 e~~CrICl~e~~e~~---------------~~l~lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~~~~~p  310 (403)
                      +..|.||++++.++.               ....++|.     |.||.+||.+|+..   +.+.+||+||..|....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            457999999886543               23368899     99999999999954   34679999999987553


No 11 
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.94  E-value=5.7e-10  Score=80.61  Aligned_cols=50  Identities=22%  Similarity=0.509  Sum_probs=41.9

Q ss_pred             CCCcceecccCcCCCC-ceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          251 EEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       251 ee~~CrICl~e~~e~~-~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ++..|.||++++.+++ ....++|.     |.||..||.+|++.  +.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKE--GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence            4567999999885543 46778899     99999999999998  589999998764


No 12 
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.90  E-value=1.1e-09  Score=91.93  Aligned_cols=50  Identities=16%  Similarity=0.365  Sum_probs=40.9

Q ss_pred             CCcceecccCcCCC---------------CceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          252 EAVCRICLVELGEG---------------GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       252 e~~CrICl~e~~e~---------------~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++.|.||++++.+.               ..+..++|+     |.||.+||.+||..  +.+||+||++|..
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF  101 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence            45699999887643               125668899     99999999999987  7899999998753


No 13 
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85  E-value=1.9e-09  Score=80.67  Aligned_cols=51  Identities=20%  Similarity=0.477  Sum_probs=42.0

Q ss_pred             CCCCcceecccCcCCC----CceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~----~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ++...|.||++.+.+.    .....++|.     |.||..||.+|++.  +..||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence            4567799999987542    233778999     99999999999987  789999998875


No 14 
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.80  E-value=1.8e-09  Score=81.59  Aligned_cols=52  Identities=21%  Similarity=0.546  Sum_probs=42.8

Q ss_pred             CCCCcceecccCcCC----CCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGE----GGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e----~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+    +.....++|.     |.||..||.+|++.  +.+||+||+.+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHc--CCCCCCCCCccCh
Confidence            456789999988754    2344778899     99999999999987  6799999988763


No 15 
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79  E-value=7.5e-09  Score=81.07  Aligned_cols=54  Identities=20%  Similarity=0.391  Sum_probs=44.8

Q ss_pred             CCCCcceecccCcCCCCc-eEEecCCCCCcCceecHhhHHHHHhhc-CCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGD-MFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~-~l~lPC~CkGslh~fH~~CL~~WL~~k-g~~tCplCr~~~~~  308 (403)
                      ++...|.||++.+.+.+. ...++|.     |.||..||.+|++.+ +...||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            456789999998876544 6788999     999999999999874 34799999998764


No 16 
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75  E-value=6.3e-09  Score=79.55  Aligned_cols=49  Identities=22%  Similarity=0.443  Sum_probs=41.6

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++.+.+   ...++|.     |.||..||.+|+..  +..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLPCK-----HVFCYLCVKGASWL--GKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEETTT-----EEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCC---CEEccCC-----CHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence            446789999988744   5778999     99999999999987  6899999998864


No 17 
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.74  E-value=7.1e-09  Score=78.01  Aligned_cols=51  Identities=27%  Similarity=0.597  Sum_probs=42.5

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +++..|.||++.+.+  ....++|+     |.||..|+.+|++.  +.+||+||..+..+
T Consensus         3 ~~~~~C~IC~~~~~~--~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            3 TVAERCPICLEDPSN--YSMALPCL-----HAFCYVCITRWIRQ--NPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCCSSCCSCCCS--CEEETTTT-----EEESTTHHHHHHHH--SCSTTTTCCCCCCE
T ss_pred             CCCCCCeeCCccccC--CcEecCCC-----CeeHHHHHHHHHhC--cCcCcCCChhhHhh
Confidence            346679999988753  35788999     99999999999987  68999999988743


No 18 
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.72  E-value=4.7e-09  Score=77.44  Aligned_cols=51  Identities=20%  Similarity=0.476  Sum_probs=41.9

Q ss_pred             CCCcceecccCcCCC----CceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~----~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+.    .....++|+     |.||..|+.+|++.  +.+||+||..+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence            356799999887542    334778999     99999999999987  7899999988763


No 19 
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70  E-value=5.3e-09  Score=79.31  Aligned_cols=48  Identities=23%  Similarity=0.661  Sum_probs=41.2

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++...|.||++.+.+    ..++|.     |.||..||.+|+..  +..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSDR--HRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred             CCCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence            446789999988754    778999     99999999999985  7899999988764


No 20 
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.69  E-value=2.2e-09  Score=92.15  Aligned_cols=50  Identities=16%  Similarity=0.373  Sum_probs=0.4

Q ss_pred             CCcceecccCcCCC-------------C--ceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          252 EAVCRICLVELGEG-------------G--DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       252 e~~CrICl~e~~e~-------------~--~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++.|.||++++.+.             +  .+..++|.     |.||.+||++||+.  +.+||+||++|..
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF  112 (117)
T ss_dssp             C-----------------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence            35799999888541             2  22335799     99999999999998  7899999998753


No 21 
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69  E-value=2e-08  Score=78.50  Aligned_cols=48  Identities=23%  Similarity=0.479  Sum_probs=41.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ++...|.||++.+.+   ...++|.     |.||..||.+|++.  +..||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence            456789999988754   5678999     99999999999987  789999999875


No 22 
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.69  E-value=1.5e-08  Score=78.30  Aligned_cols=50  Identities=22%  Similarity=0.460  Sum_probs=42.3

Q ss_pred             CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++.+.+   ...++ |.     |.||..||.+|++.++...||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTT---CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhC---CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            456789999988754   56789 99     9999999999999865689999999754


No 23 
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67  E-value=2.7e-08  Score=75.62  Aligned_cols=51  Identities=27%  Similarity=0.544  Sum_probs=41.8

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh-cCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI-KGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~-kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|++. .++..||+||+.+..
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            456789999988753   6677999     99999999999974 246799999988753


No 24 
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62  E-value=3.3e-08  Score=75.74  Aligned_cols=49  Identities=27%  Similarity=0.498  Sum_probs=41.1

Q ss_pred             CCCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...+ +|.     |.||..||.+|++.  +..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~   62 (72)
T 2djb_A           13 TPYILCSICKGYLID---ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ   62 (72)
T ss_dssp             CGGGSCTTTSSCCSS---CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred             CCCCCCCCCChHHHC---cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence            456789999988754   4454 899     99999999999987  7899999998864


No 25 
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60  E-value=2.2e-08  Score=79.67  Aligned_cols=53  Identities=23%  Similarity=0.475  Sum_probs=41.7

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +....|.||++.+..+  ..-..|.     |.||.+||.+||+.+++.+||+|++++...
T Consensus        13 ~~i~~C~IC~~~i~~g--~~C~~C~-----h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           13 DAVKICNICHSLLIQG--QSCETCG-----IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSSCBCSSSCCBCSSS--EECSSSC-----CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCCcCcchhhHcccC--CccCCCC-----chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            3456799999887643  2333677     999999999999986669999999888754


No 26 
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.51  E-value=8.7e-08  Score=76.19  Aligned_cols=51  Identities=22%  Similarity=0.434  Sum_probs=43.4

Q ss_pred             CCCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      .+++..|.||++.+.+   ...++ |.     |.|+..||.+|+...++..||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSS---CEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcC---ceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3567889999987754   57889 99     9999999999998766789999998874


No 27 
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51  E-value=4.9e-08  Score=73.45  Aligned_cols=49  Identities=18%  Similarity=0.494  Sum_probs=40.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|++ +++..||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCS---PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCEESS---CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChHhcC---eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence            456789999988754   3447999     9999999999996 34779999998875


No 28 
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51  E-value=1.3e-07  Score=72.90  Aligned_cols=51  Identities=27%  Similarity=0.562  Sum_probs=42.2

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc----CCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK----GNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k----g~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|+...    +...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            446789999988754   4578999     999999999999873    37899999988763


No 29 
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50  E-value=1.8e-07  Score=69.52  Aligned_cols=45  Identities=27%  Similarity=0.569  Sum_probs=37.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc-CCcccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVC  302 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k-g~~tCplC  302 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|++.. ++..||+|
T Consensus        18 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSS---CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCC---eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence            456789999988754   5677999     999999999999853 36799998


No 30 
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.47  E-value=1.6e-07  Score=72.56  Aligned_cols=50  Identities=20%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++.+.+   ...++|+     |.|++.||.+|+.. ++.+||+|++.+..
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccC---CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence            457789999987754   5778999     99999999999974 47899999988753


No 31 
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46  E-value=1.2e-07  Score=68.86  Aligned_cols=45  Identities=33%  Similarity=0.730  Sum_probs=37.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh-cCCcccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI-KGNKTCDVC  302 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~-kg~~tCplC  302 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|+.. +++..||+|
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKE---PVIIECG-----HNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSS---CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCc---cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence            456789999988865   3568999     99999999999764 457899998


No 32 
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45  E-value=1.6e-07  Score=72.42  Aligned_cols=51  Identities=31%  Similarity=0.628  Sum_probs=42.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh----cCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI----KGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~----kg~~tCplCr~~~~~  308 (403)
                      ++...|.||++.+.+   ...++|.     |.||..|+.+|+..    .+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            446789999988754   4567999     99999999999986    347899999988763


No 33 
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.44  E-value=5.6e-08  Score=83.58  Aligned_cols=48  Identities=25%  Similarity=0.607  Sum_probs=40.9

Q ss_pred             CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +..|.||++.+.+   +..++|+     |.||..||.+|+..  +.+||+||+.+...
T Consensus        53 ~~~C~iC~~~~~~---~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCC---ceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCC
Confidence            4579999988754   6778999     99999999999987  78999999987643


No 34 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.41  E-value=9e-08  Score=79.41  Aligned_cols=54  Identities=19%  Similarity=0.439  Sum_probs=44.2

Q ss_pred             CCCCcceecccCcCCC----CceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccccc
Q 015667          250 EEEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP  310 (403)
Q Consensus       250 eee~~CrICl~e~~e~----~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~p  310 (403)
                      .++..|.||++.+.+.    .....++|+     |.||..||.+|++.  +.+||+|++.+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--CSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--CCCCCCCCCcCcccc
Confidence            3467899999887542    344788999     99999999999987  679999999887543


No 35 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.33  E-value=2.7e-07  Score=76.55  Aligned_cols=52  Identities=21%  Similarity=0.546  Sum_probs=42.1

Q ss_pred             CCCCcceecccCcCC----CCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGE----GGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e----~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++...|.||++.+.+    ......++|+     |.||..||++|++.  +.+||+||..+..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence            445679999988754    2234678899     99999999999988  6899999988763


No 36 
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.33  E-value=9e-08  Score=73.59  Aligned_cols=51  Identities=29%  Similarity=0.552  Sum_probs=42.0

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc-----CCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-----GNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k-----g~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|+...     +...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            456789999988754   4568999     999999999999862     36799999998763


No 37 
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.31  E-value=2.6e-07  Score=74.65  Aligned_cols=48  Identities=21%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             CCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   ...+ +|+     |.||..||.+|+..  +..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence            35789999988754   4555 899     99999999999986  6899999988763


No 38 
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.29  E-value=2.6e-07  Score=75.42  Aligned_cols=49  Identities=29%  Similarity=0.612  Sum_probs=41.0

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +++..|.||++.+.+   ... ++|+     |.||..||.+|+..+ ...||+||..+.
T Consensus        20 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~~~~   69 (100)
T 3lrq_A           20 AEVFRCFICMEKLRD---ARLCPHCS-----KLCCFSCIRRWLTEQ-RAQCPHCRAPLQ   69 (100)
T ss_dssp             HHHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred             CCCCCCccCCccccC---ccccCCCC-----ChhhHHHHHHHHHHC-cCCCCCCCCcCC
Confidence            346789999988754   555 8999     999999999999973 279999999885


No 39 
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.26  E-value=4.9e-07  Score=74.25  Aligned_cols=48  Identities=23%  Similarity=0.546  Sum_probs=40.6

Q ss_pred             CCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   ...+ +|+     |.||..||.+|+..  +..||+|+..+..
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence            46679999988754   5555 999     99999999999987  6899999998764


No 40 
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.23  E-value=4.9e-07  Score=67.69  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=39.5

Q ss_pred             CCcceeccc-CcCCCCce-EEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          252 EAVCRICLV-ELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       252 e~~CrICl~-e~~e~~~~-l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      +..|.||++ .+.+.... ..++|+     |.||..||.+|+.. +...||+||..+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~   54 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR   54 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence            467999998 55443322 457899     99999999999874 4678999998876


No 41 
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.18  E-value=1e-06  Score=74.06  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   ...++|+     |.||..||.+|+.. +...||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR---PITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC---cEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence            35679999987754   5778999     99999999999984 35699999988864


No 42 
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.17  E-value=1.1e-06  Score=77.35  Aligned_cols=48  Identities=29%  Similarity=0.645  Sum_probs=39.9

Q ss_pred             CCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ++..|.||++.+.+   ...+ +|.     |.||..||.+|+.. ++..||+||..+.
T Consensus        53 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           53 SELMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV  101 (165)
T ss_dssp             HHHBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred             CCCCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence            45689999988754   4555 899     99999999999985 4789999999875


No 43 
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03  E-value=1.7e-06  Score=70.57  Aligned_cols=49  Identities=31%  Similarity=0.637  Sum_probs=39.7

Q ss_pred             CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhc-CCcccccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQN  308 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~k-g~~tCplCr~~~~~  308 (403)
                      ...|.||++.+.+   ...++|.     |.||..||.+|+..+ +...||+|+..+..
T Consensus        21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4579999988754   4557999     999999999999863 34589999987763


No 44 
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.02  E-value=3.6e-06  Score=70.29  Aligned_cols=50  Identities=26%  Similarity=0.461  Sum_probs=41.2

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.|+..||.+|+..+ +..||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcC---eEECCcC-----ChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence            456789999987754   5678999     999999999999874 3499999988763


No 45 
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.00  E-value=7.7e-07  Score=73.68  Aligned_cols=50  Identities=26%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.||..||.+|+.. ++..||+||+.+..
T Consensus        13 ~~~~~C~iC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVE---PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSS---CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCc---eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence            345779999987754   5778999     99999999999974 46899999998864


No 46 
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.97  E-value=3.9e-06  Score=73.75  Aligned_cols=49  Identities=20%  Similarity=0.450  Sum_probs=40.7

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   ...++|.     |.|+..||.+|+.. +...||+||..+..
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred             cCCEeecCChhhcC---CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence            35679999987754   5678999     99999999999985 34689999988764


No 47 
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.97  E-value=3.3e-06  Score=69.98  Aligned_cols=49  Identities=18%  Similarity=0.487  Sum_probs=40.8

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   +..++|+     |.||..||.+|+... +..||+||..+..
T Consensus        22 ~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILAD---PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcC---cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence            35679999987754   5668999     999999999999863 5789999988764


No 48 
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.97  E-value=2.8e-06  Score=85.30  Aligned_cols=53  Identities=28%  Similarity=0.657  Sum_probs=39.6

Q ss_pred             CCCCcceecccCcCCCCceEE-----ecCCCCCcCceecHhhHHHHHhhcCC---------ccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-----LECSCKGELALAHKECAVKWFTIKGN---------KTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-----lPC~CkGslh~fH~~CL~~WL~~kg~---------~tCplCr~~~~  307 (403)
                      ++..+|.||++.+.+++.+-.     ..|+     |.||..||.+||+...+         ..||.|++.+.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~-----h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV-----LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC-----CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccC-----CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            456789999988766343321     2477     99999999999976322         58999998765


No 49 
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.90  E-value=8.9e-06  Score=64.54  Aligned_cols=55  Identities=22%  Similarity=0.420  Sum_probs=42.4

Q ss_pred             CCCCcceecccCcCCCCceEEec--CCCCCcCceecHhhHHHHHhhcCCccccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE--CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV  311 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP--C~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~pv  311 (403)
                      +++..|.||++.+.. .+...+|  |+     |.|++.|+.+|+.. ++..||+||+.|...+.
T Consensus         9 ~~~~~CpICle~~~~-~d~~~~p~~CG-----H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEI-DDINFFPCTCG-----YQICRFCWHRIRTD-ENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCT-TTTTCCSSTTS-----CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCcc-ccccccccCCC-----CCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence            456789999987753 2344555  77     99999999999864 47899999999986533


No 50 
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.88  E-value=8e-06  Score=61.80  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=39.9

Q ss_pred             CCCCCcceecccCcCCCCceEEe--cCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKL--ECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~l--PC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      .+....|.||++...+   ...+  ||+     |. |-..|+.+|.+.  +..||+||+.+..+
T Consensus         4 ~~~~~~C~IC~~~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~~   57 (63)
T 2vje_B            4 QNLLKPCSLCEKRPRD---GNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQLV   57 (63)
T ss_dssp             GGGGSBCTTTSSSBSC---EEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred             CCcCCCCcccCCcCCC---eEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence            3456789999976533   3344  999     98 899999999876  68999999988643


No 51 
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.87  E-value=5.3e-06  Score=84.04  Aligned_cols=49  Identities=20%  Similarity=0.547  Sum_probs=41.4

Q ss_pred             CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      ...|.||++.+.   ++..+||+     |.||..|+.+|+.. ++..||+||..+...
T Consensus       332 ~~~C~ICle~~~---~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDK---DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBC---CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCC---CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence            468999998764   36789999     99999999999984 378999999988754


No 52 
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.82  E-value=1.1e-05  Score=61.23  Aligned_cols=49  Identities=31%  Similarity=0.436  Sum_probs=38.6

Q ss_pred             CCCcceecccCcCCCCceEEe--cCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKL--ECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~l--PC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      ++..|.||++...+   ...+  ||+     |. |=.+|+.+|.+.  +..||+||+.+..+
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~~   58 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQMI   58 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred             CcCCCCcCCCCCCC---EEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence            35579999977543   4455  999     99 569999999976  67999999988643


No 53 
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81  E-value=2.6e-06  Score=62.79  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      +++..|.||++.+.+   ...++|.     |.|+..||.+|     ...||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence            456779999988864   4678999     99999999885     6799999988763


No 54 
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.77  E-value=2.9e-05  Score=61.99  Aligned_cols=49  Identities=8%  Similarity=0.059  Sum_probs=42.0

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++-+.+   +..++|+     |.|-+.||.+|+..  +.+||+|++.+..
T Consensus        12 p~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTD---PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred             chheECcccCchhcC---CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence            457899999977654   6888999     99999999999986  7899999988753


No 55 
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.70  E-value=1.3e-05  Score=69.73  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=41.3

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      .+++..|.||++.+.+   ...++|.     |.|+..||.+|++. +...||+||+++.
T Consensus        28 l~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~   77 (141)
T 3knv_A           28 LEAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI   77 (141)
T ss_dssp             CCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred             CCcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence            3567889999987754   4668999     99999999999975 3569999999764


No 56 
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.69  E-value=6.4e-05  Score=62.05  Aligned_cols=49  Identities=8%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++-+.+   +.+++|+     |.|-+.||.+|+..  +.+||+|++.+..
T Consensus        27 p~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTD---PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSS---EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccC---CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence            457899999977654   6888999     99999999999985  7899999988763


No 57 
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.65  E-value=7.8e-06  Score=63.39  Aligned_cols=45  Identities=27%  Similarity=0.572  Sum_probs=37.7

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      ++..|.||++.+.   +...+||+     |. |...|+.+|      ..||+||..+...
T Consensus        23 ~~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           23 EEKLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK   68 (74)
T ss_dssp             HHTBCTTTSSSBC---CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred             cCCCCCCCCCCCC---CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence            3568999997764   36788999     99 999999999      6999999888643


No 58 
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.61  E-value=9e-06  Score=67.79  Aligned_cols=45  Identities=22%  Similarity=0.405  Sum_probs=38.1

Q ss_pred             CCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ++..|.||++.+.+   +..+ +|+     |.|+..||.+|+.    ..||+|+..+.
T Consensus        21 ~~~~C~IC~~~~~~---pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILRE---PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSS---CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhC---ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence            46789999988754   4566 899     9999999999987    68999998874


No 59 
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.41  E-value=0.00023  Score=58.47  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=41.0

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++-+.+   +.+++|.    -|.|-+.||.+|+..  +.+||+|++.+..
T Consensus        20 p~~~~CpI~~~~m~d---PV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCD---PVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSS---EEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccC---CeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence            457899999977754   6778866    289999999999986  7899999988763


No 60 
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.37  E-value=0.00011  Score=64.51  Aligned_cols=51  Identities=25%  Similarity=0.437  Sum_probs=41.7

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++...|.||++.+.+   +..++|.     |.|...||.+|+..+ ..+||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence            3556789999987754   4668999     999999999999864 3599999988754


No 61 
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.32  E-value=0.0002  Score=66.08  Aligned_cols=49  Identities=6%  Similarity=-0.033  Sum_probs=40.6

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      .+...|.||++-+.+   +.+++|+     |.|-+.||.+|+... ..+||+|+..+.
T Consensus       206 ~~~~~c~i~~~~~~d---Pv~~~~g-----h~f~~~~i~~~~~~~-~~~cP~~~~~~~  254 (281)
T 2c2l_A          206 PDYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRV-GHFNPVTRSPLT  254 (281)
T ss_dssp             CSTTBCTTTCSBCSS---EEECSSC-----CEEETTHHHHHHHHT-CSSCTTTCCCCC
T ss_pred             CcccCCcCcCCHhcC---CeECCCC-----CEECHHHHHHHHHHC-CCCCcCCCCCCc
Confidence            356789999977754   6889999     999999999999874 345999998875


No 62 
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27  E-value=0.0002  Score=55.11  Aligned_cols=47  Identities=23%  Similarity=0.432  Sum_probs=37.8

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      .+++..|.||++...   ++..+||.     |. |-..|+..      ...||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           12 EENSKDCVVCQNGTV---NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCCSSCCSSSSSSCC---CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCCcCcCCC---CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence            345678999997653   47889999     99 99999983      47999999988754


No 63 
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20  E-value=2.6e-05  Score=60.32  Aligned_cols=44  Identities=27%  Similarity=0.606  Sum_probs=35.4

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCcccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ++..|.||++.+.+   +..+||.     |. |...|+.+      ...||+||..+..
T Consensus        24 ~~~~C~IC~~~~~~---~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIA---IVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCC---BCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCC---EEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence            35679999977643   5678999     99 99999953      3699999998865


No 64 
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.19  E-value=0.00019  Score=57.48  Aligned_cols=50  Identities=20%  Similarity=0.511  Sum_probs=38.5

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhhc---C---Cccccc--ccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIK---G---NKTCDV--CKQDV  306 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~k---g---~~tCpl--Cr~~~  306 (403)
                      +...|.||++++... .... .+|.     |.|.++|+.+|+..+   +   ...||.  |+..+
T Consensus         4 ~~~~C~IC~~~~~~~-~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~   62 (94)
T 1wim_A            4 GSSGCKLCLGEYPVE-QMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG   62 (94)
T ss_dssp             SBCCCSSSCCCCBGG-GEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred             CCcCCcccCcccccc-cceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence            356799999887543 3344 4799     999999999999764   2   358999  99873


No 65 
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13  E-value=0.00051  Score=55.49  Aligned_cols=48  Identities=17%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHhhc----CCccccc--cccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIK----GNKTCDV--CKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~~k----g~~tCpl--Cr~~  305 (403)
                      .++..|.||++-+.+   +..++ |.     |.|-+.||.+|+...    +..+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcC---CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            456789999977754   67886 99     999999999999863    3469999  9866


No 66 
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.84  E-value=0.00085  Score=61.31  Aligned_cols=50  Identities=8%  Similarity=0.004  Sum_probs=41.4

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      .++..|.||++-+.+   +.+++|+     |.|=+.||.+|+...+ .+||+|+..+..
T Consensus       104 p~~f~CPI~~elm~D---PV~~~~G-----htfer~~I~~~l~~~~-~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRVG-HFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCC---CeECCCC-----CEECHHHHHHHHHhCC-CCCCCCcCCCCh
Confidence            457889999977654   6788999     9999999999998744 379999987753


No 67 
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.78  E-value=0.001  Score=62.83  Aligned_cols=51  Identities=24%  Similarity=0.476  Sum_probs=38.8

Q ss_pred             CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      -..|.||..-...+  .+--.|.     +.||..|+.+|++.+++..||.|+..+...
T Consensus       180 i~~C~iC~~iv~~g--~~C~~C~-----~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQG--QSCETCG-----IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSC--EECSSSC-----CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCC--cccCccC-----hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            55799998654432  2222377     899999999999987778999999987654


No 68 
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.59  E-value=0.0015  Score=63.35  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=41.2

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccc--cccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV--CKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCpl--Cr~~~~  307 (403)
                      ..+..|.||+.-+.+  .+....|+     |.|=+.||.+|+...+...||+  |++.+.
T Consensus       179 ~~el~CPIcl~~f~D--PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYEA--PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCSS--EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCcccC--CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            346789999987754  23335899     9999999999998766789999  998765


No 69 
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.56  E-value=0.00055  Score=68.05  Aligned_cols=46  Identities=24%  Similarity=0.678  Sum_probs=38.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      +++..|.||++.+.   ++..+||+     |. |...|+..|      ..||+||..+...
T Consensus       293 ~~~~~C~IC~~~~~---~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~  339 (345)
T 3t6p_A          293 QEERTCKVCMDKEV---SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT  339 (345)
T ss_dssp             HTTCBCTTTSSSBC---CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred             cCCCCCCccCCcCC---ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence            34678999998764   36788999     99 999999988      5899999988643


No 70 
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.45  E-value=0.00059  Score=53.76  Aligned_cols=45  Identities=24%  Similarity=0.592  Sum_probs=37.0

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCce-ecHhhHHHHHhhcCCccccccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~-fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      ++..|.||++...   +...+||+     |. |=..|+.+|      ..||+||..+...
T Consensus        17 ~~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~   62 (79)
T 2yho_A           17 EAMLCMVCCEEEI---NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHTBCTTTSSSBC---CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred             CCCEeEEeCcccC---cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence            3567999997653   47789999     99 889999887      3999999998754


No 71 
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.04  E-value=0.0043  Score=46.87  Aligned_cols=46  Identities=7%  Similarity=0.015  Sum_probs=38.1

Q ss_pred             CcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          253 AVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       253 ~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ..|.||++-+.+   ..++ +|.     |.|=+.||.+||+.  +.+||++++.+..
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG-----~~yer~~I~~~l~~--~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSR-----TIFEKSLLEQYVKD--TGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTT-----EEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCC---CEEeCCCC-----cEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence            469999877653   5677 799     99999999999987  5679999988764


No 72 
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.36  E-value=0.026  Score=43.62  Aligned_cols=52  Identities=25%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             CCCCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccccccc
Q 015667          248 IPEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDVQN  308 (403)
Q Consensus       248 ~~eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~~~  308 (403)
                      .+..+..|.||...    ++++. -.|.     ..||..|++..|..  ++...|+.|......
T Consensus         8 ~~~~~~~C~vC~~~----~~ll~Cd~C~-----~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C            8 NLAPGARCGVCGDG----TDVLRCTHCA-----AAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CCCTTCCCTTTSCC----TTCEECSSSC-----CEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCCCcCCCCCC----CeEEECCCCC-----CceecccCCCccCcCCCCCEECccccCCCcc
Confidence            34456779999632    23332 2366     89999999988865  367899999865443


No 73 
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.54  E-value=0.05  Score=45.81  Aligned_cols=47  Identities=23%  Similarity=0.462  Sum_probs=36.4

Q ss_pred             ceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccccc
Q 015667          255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL  309 (403)
Q Consensus       255 CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~~  309 (403)
                      |-+|--..  ..-.+.+||+     |.|=.+|+..|.+. ++++||+|+..+..+
T Consensus         4 C~~C~~Pi--~iygRmIPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            4 CDKCGLPI--KVYGRMIPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRI   50 (101)
T ss_dssp             CTTTCSBC--SEEEEEETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEE
T ss_pred             cCccCCCe--EEEeeecccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeee
Confidence            55553332  2235789999     99999999999865 379999999999877


No 74 
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=85.54  E-value=0.29  Score=39.59  Aligned_cols=54  Identities=28%  Similarity=0.477  Sum_probs=34.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCcccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV  306 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~  306 (403)
                      +++..|.||.......++ .++-|.  +--..||..|+..=+.-+|...|+.|....
T Consensus        23 ~~~~~C~vC~~~~s~~~~-~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~   76 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSN-VILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR   76 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEE-EEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred             CCCCcCCcCCCCCCCCCC-CEEECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence            456789999865422222 233322  222789999987544445788999997654


No 75 
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.97  E-value=0.087  Score=42.55  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=36.7

Q ss_pred             CCCCcceecccCcCCCCceEEe--cCCCCCcCceecHhhHHHHHh------hcCCcccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKL--ECSCKGELALAHKECAVKWFT------IKGNKTCDVCKQDVQN  308 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~l--PC~CkGslh~fH~~CL~~WL~------~kg~~tCplCr~~~~~  308 (403)
                      +.+..|.||.....++++.+++  .|.     ..||..|+..=|.      -++...|+.|......
T Consensus        14 e~~~~C~vC~~~~~~~~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~   75 (88)
T 1wev_A           14 EMGLACVVCRQMTVASGNQLVECQECH-----NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR   75 (88)
T ss_dssp             HHCCSCSSSCCCCCCTTCCEEECSSSC-----CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred             CCCCcCCCCCCCCCCCCCceEECCCCC-----CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence            3467899998654332233322  266     8999999987664      2478899999876653


No 76 
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.28  E-value=0.55  Score=35.24  Aligned_cols=47  Identities=19%  Similarity=0.543  Sum_probs=31.9

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      +.+..|.||...    ++++. -.|.     ..||..|+..=+..  ++...|+.|..+
T Consensus         9 ~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG----GEIILCDTCP-----RAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC----SSEEECSSSS-----CEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC----CcEEECCCCC-----hhhhhhccCCCCCCCCCCceECcccccc
Confidence            446789999742    23333 2255     89999999875432  467899999753


No 77 
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=83.92  E-value=0.29  Score=38.17  Aligned_cols=51  Identities=27%  Similarity=0.541  Sum_probs=33.2

Q ss_pred             CCCCcceecccCcC-CCCceEEe-cCCCCCcCceecHhhHHHHHhhcCCccccccccc
Q 015667          250 EEEAVCRICLVELG-EGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~-e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~  305 (403)
                      .++..|.||..... +++.++.- .|.     ..||..|+..=..-+|...|+.|...
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~-----~~~H~~Cl~~~~vP~g~W~C~~C~~~   66 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCN-----LAVHQECYGVPYIPEGQWLCRHCLQS   66 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSC-----CEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCC-----CccccccCCCCcCCCCCcCCccCcCc
Confidence            44677999986542 22223322 265     79999998754444578899999754


No 78 
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.11  E-value=0.23  Score=37.31  Aligned_cols=52  Identities=23%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             CCCCCcceecccCcCCCCc-eEEe-cCCCCCcCceecHhhHHHHHh-----hcCCccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGD-MFKL-ECSCKGELALAHKECAVKWFT-----IKGNKTCDVCKQD  305 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~-~l~l-PC~CkGslh~fH~~CL~~WL~-----~kg~~tCplCr~~  305 (403)
                      ++++..|.||.....++++ ++.- .|.     ..||..|+..=+.     -++...|+.|...
T Consensus         3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~-----~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~   61 (66)
T 2yt5_A            3 SGSSGVCTICQEEYSEAPNEMVICDKCG-----QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA   61 (66)
T ss_dssp             CCCCCCBSSSCCCCCBTTBCEEECSSSC-----CEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCC-----hHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence            3456789999865433222 3332 266     8999999886442     3467899999754


No 79 
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.07  E-value=0.24  Score=38.20  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=32.8

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhhc--CCccccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIK--GNKTCDVCKQDVQ  307 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~k--g~~tCplCr~~~~  307 (403)
                      ++...|.||...+. ++..+. -.|.     .+||..|+.--....  +...|+.|...+.
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~-----~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCD-----DWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSS-----SEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCC-----cccccccCCCCccCCCCCCEEChhccCchh
Confidence            44567999975542 222222 2255     899999987554322  5678999986543


No 80 
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.82  E-value=0.66  Score=38.05  Aligned_cols=51  Identities=25%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      +.+...| ||...+. ++.+.-=.|.|..  .+||..|+.  |..  ++...|+.|+..
T Consensus        33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~   85 (91)
T 1weu_A           33 PNEPTYC-LCHQVSY-GEMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE   85 (91)
T ss_dssp             SCCCBCS-TTCCBCC-SCCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred             CCCCcEE-ECCCCCC-CCEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence            3455667 9975432 2211111233432  589999987  433  367899999754


No 81 
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.24  E-value=0.56  Score=38.62  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCK  303 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr  303 (403)
                      +.++.|.||....+.++.+.--.|.     +.||..||..++..  ++...|+.|+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~-----~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCG-----QHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSC-----CEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCC-----CCcChHHhCCccccccccCccCCcCC
Confidence            4567899997553222112223466     89999999887643  2455555543


No 82 
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=78.91  E-value=1.8  Score=38.24  Aligned_cols=46  Identities=22%  Similarity=0.576  Sum_probs=32.7

Q ss_pred             CCCCcceecccCcCCCCceEEec-CCCCCcCceecHhhHHHHHh---------hcCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFT---------IKGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP-C~CkGslh~fH~~CL~~WL~---------~kg~~tCplCr~  304 (403)
                      ..+..|+||..    +++.+.-- |-     ..||..||..=+.         ..+...|++|..
T Consensus        61 g~~d~C~vC~~----GG~LlcCD~Cp-----r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           61 GMDEQCRWCAE----GGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             SCBCSCSSSCC----CSSEEECSSSC-----CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             CCCCeecccCC----CCcEEeCCCCC-----CeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            34578999974    33444332 66     8999999997652         357899999973


No 83 
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.45  E-value=0.44  Score=43.45  Aligned_cols=49  Identities=27%  Similarity=0.509  Sum_probs=32.7

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCcccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDV  306 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~  306 (403)
                      +.+..|.+|...    ++  .+-  |.+--..||..|+...+..  +|...|+.|+..-
T Consensus         5 ~~~~~C~~C~~~----g~--ll~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG----GD--LLC--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC----EE--EEE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC----Cc--eEE--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            345679999732    22  222  2233389999999877643  4678999998654


No 84 
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.19  E-value=1.2  Score=34.69  Aligned_cols=48  Identities=29%  Similarity=0.671  Sum_probs=29.3

Q ss_pred             CCCCCcceecccCcCCCCceEEecCC---CCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~---CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      +.+...| ||..... + .  .+-|-   |..  .+||..|+.  |..  ++...|+.|...
T Consensus        13 ~~~~~~C-~C~~~~~-g-~--MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~   65 (71)
T 1wen_A           13 PNEPTYC-LCHQVSY-G-E--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE   65 (71)
T ss_dssp             TTSCCCS-TTCCCSC-S-S--EECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             CCCCCEE-ECCCCCC-C-C--EeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcc
Confidence            3455677 8865432 2 2  22333   432  589999987  443  267899999754


No 85 
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.93  E-value=0.8  Score=37.49  Aligned_cols=47  Identities=26%  Similarity=0.487  Sum_probs=27.2

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHh-hcCCcccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT-IKGNKTCDVCKQ  304 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~-~kg~~tCplCr~  304 (403)
                      +...| ||....+.+ ..+. -.|.     .+||..|+..=+. ......|+.|+.
T Consensus        27 d~vrC-iC~~~~~~~-~mi~Cd~C~-----~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           27 DVTRC-ICGFTHDDG-YMICCDKCS-----VWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             CBCCC-TTSCCSCSS-CEEEBTTTC-----BEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             CCEEe-ECCCccCCC-cEEEcCCCC-----CcCcCcCCCCCccCCCCCEECCCCcC
Confidence            34557 886544332 2222 2266     8999999853111 113579999974


No 86 
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.58  E-value=0.7  Score=41.20  Aligned_cols=47  Identities=26%  Similarity=0.598  Sum_probs=32.1

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDV  306 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~  306 (403)
                      .++.|.||...    ++.+. -.|.     ..||..|+..-+..  +|...|+.|+..-
T Consensus         3 ~~~~C~~C~~~----g~ll~Cd~C~-----~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG----GELLCCEKCP-----KVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC----SSCEECSSSS-----CEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC----CeeeecCCCC-----cccCccccCCCCCCCCCCCEECccccCcc
Confidence            45679999733    23222 2255     89999999877653  4678999998653


No 87 
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.69  E-value=1.1  Score=31.91  Aligned_cols=46  Identities=22%  Similarity=0.465  Sum_probs=28.6

Q ss_pred             CcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          253 AVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       253 ~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      +.|.||...... +.++. -.|.     ..||..|+..=+..  ++...|+.|..
T Consensus         1 a~C~vC~~~~~~-~~ll~Cd~C~-----~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            1 ARCKVCRKKGED-DKLILCDECN-----KAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCC-SCCEECTTTC-----CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCC-CCEEECCCCC-----hhhCcccCCCCcCCCCCCcEECcCccc
Confidence            358899754432 23333 2366     89999999643322  35678999964


No 88 
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=72.79  E-value=3.5  Score=35.78  Aligned_cols=47  Identities=23%  Similarity=0.514  Sum_probs=30.7

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHH------h---hcCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWF------T---IKGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL------~---~kg~~tCplCr~  304 (403)
                      ..+..|+||..    +++++.  |  ++--+.||..||.+=+      +   ..+...|.+|.-
T Consensus        55 g~~~~C~vC~d----GG~Llc--C--d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~  110 (129)
T 3ql9_A           55 GMDEQCRWCAE----GGNLIC--C--DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP  110 (129)
T ss_dssp             SCBSSCTTTCC----CSEEEE--C--SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred             CCCCcCeecCC----CCeeEe--c--CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence            34567999973    333332  1  2333999999999742      2   356799999953


No 89 
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.87  E-value=0.51  Score=38.34  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHh--hcCCcccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQDV  306 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~--~kg~~tCplCr~~~  306 (403)
                      .+...|.||.....+ +.++. -.|.     ..||..|+..=|.  -++...|+.|....
T Consensus        14 ~~~~~C~vC~~~~~~-~~ll~CD~C~-----~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~   67 (92)
T 2e6r_A           14 IDSYICQVCSRGDED-DKLLFCDGCD-----DNYHIFCLLPPLPEIPRGIWRCPKCILAE   67 (92)
T ss_dssp             CCCCCCSSSCCSGGG-GGCEECTTTC-----CEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred             cCCCCCccCCCcCCC-CCEEEcCCCC-----chhccccCCCCcccCCCCCcCCccCcCcc
Confidence            445679999765432 22332 2266     8999999873222  23678899997653


No 90 
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.08  E-value=2.6  Score=31.33  Aligned_cols=52  Identities=13%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             CCCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh---cCCccccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQD  305 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~  305 (403)
                      .+++..|.||...+.+++..+. -.|.     .+||..|+.--...   -..-.|+.|+..
T Consensus         3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            3 SGSSGQCGACGESYAADEFWICCDLCE-----MWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CSSCCCCSSSCCCCCSSSCEEECSSSC-----CEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCCccCCCCCEEEccCCC-----CCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            3556789999877644332222 2355     89999997643221   135679888753


No 91 
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.32  E-value=3.8  Score=31.93  Aligned_cols=51  Identities=16%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh---cCCcccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDV  306 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~~  306 (403)
                      .+...| ||...+..++..+. --|.     .+||..|+.-=-..   -..-.|+.|+...
T Consensus        10 ~~~~~C-~C~~~~d~~~~MIqCd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           10 LVPVYC-LCRQPYNVNHFMIECGLCQ-----DWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCS-TTSCSCCSSSCEEEBTTTC-----CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CCccEE-EcCCccCCCCceEEcCCCC-----CcEEeeecCcccccccCCCeEECCCccccc
Confidence            345567 89766643222222 2255     89999998532211   1467899998654


No 92 
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.63  E-value=4.6  Score=33.42  Aligned_cols=51  Identities=27%  Similarity=0.516  Sum_probs=36.3

Q ss_pred             CCcceecccCc--CCCCceEE--ecCCCCCcCceecHhhHHHHHhhcCCcccccccccccc
Q 015667          252 EAVCRICLVEL--GEGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN  308 (403)
Q Consensus       252 e~~CrICl~e~--~e~~~~l~--lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~~  308 (403)
                      ...|.||-++.  .+.+++++  ..|.     --+-+.|.+.=.+. ++..||.|+..|.-
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErke-G~q~CpqCktrYkr   70 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERRE-GTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHhc-cCccccccCCcccc
Confidence            46899997663  33344443  3355     45788998876664 79999999999974


No 93 
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=66.91  E-value=2.8  Score=35.19  Aligned_cols=47  Identities=26%  Similarity=0.355  Sum_probs=29.1

Q ss_pred             CCCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCK  303 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr  303 (403)
                      .+++..|.+|..    +++  .+-|..++--..||..||.  |..  +|...||-|.
T Consensus        12 ~~~~~~C~~C~~----~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~   60 (107)
T 4gne_A           12 QMHEDYCFQCGD----GGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ   60 (107)
T ss_dssp             CSSCSSCTTTCC----CSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred             CCCCCCCCcCCC----CCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence            345677999972    222  3446422333799999998  543  3566777654


No 94 
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=66.65  E-value=1.4  Score=38.68  Aligned_cols=51  Identities=18%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHh---hcCCcccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT---IKGNKTCDVCKQDV  306 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~---~kg~~tCplCr~~~  306 (403)
                      ++...| ||...+.+++..+. -.|.     .+||..|+.---.   ..+...|+.|+..-
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~-----~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~   60 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCDRCQ-----NWYHGRCVGILQSEAELIDEYVCPQCQSTE   60 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECTTTC-----CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECCCCC-----chhChhhcCCchhhccCccCeecCCCcchh
Confidence            345678 99765543332222 1244     8999999852211   13568999998653


No 95 
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.31  E-value=0.92  Score=33.27  Aligned_cols=47  Identities=26%  Similarity=0.576  Sum_probs=30.3

Q ss_pred             CCCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          249 PEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       249 ~eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      .+.+..|.||...    ++++. -.|.     ..||..|+..=+..  ++...|+.|..
T Consensus         6 ~~~~~~C~vC~~~----g~ll~Cd~C~-----~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            6 SGHEDFCSVCRKS----GQLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CSSCCSCSSSCCS----SCCEECSSSS-----CEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCCccCCCC----CeEEEcCCCC-----cceECccCCCCcCCCCCCceEChhhhC
Confidence            3456779999753    22332 2355     89999998854432  35678888853


No 96 
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.75  E-value=5.5  Score=30.64  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHh-------hcCCcccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT-------IKGNKTCDVCKQDV  306 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~-------~kg~~tCplCr~~~  306 (403)
                      ....| ||...+.. +..+. -.|.     .+||..|+.-=..       ....-.|+.|+...
T Consensus        15 ~~~~C-~C~~~~~~-~~MI~Cd~C~-----~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~   71 (76)
T 1wem_A           15 NALYC-ICRQPHNN-RFMICCDRCE-----EWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             TCCCS-TTCCCCCS-SCEEECSSSC-----CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CCCEE-ECCCccCC-CCEEEeCCCC-----CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence            35667 88765532 22221 2255     8999999842111       12468899998543


No 97 
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=65.47  E-value=0.98  Score=33.87  Aligned_cols=47  Identities=21%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      ..+..|.||...    ++++. -.|.     ..||..|+..=+..  ++...|+.|...
T Consensus         7 ~~~~~C~vC~~~----g~ll~Cd~C~-----~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            7 HHMEFCRVCKDG----GELLCCDTCP-----SSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC----SSCBCCSSSC-----CCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCcCCCCCCC----CCEEEcCCCC-----HHHcccccCCCcCcCCCCccCChhhcCc
Confidence            346679999742    22222 2255     78999998854433  357889999754


No 98 
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.32  E-value=2.9  Score=34.78  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=21.3

Q ss_pred             CcceecccCcC------CCCceEE-ecCCCCCcCceecHhhHHHHH
Q 015667          253 AVCRICLVELG------EGGDMFK-LECSCKGELALAHKECAVKWF  291 (403)
Q Consensus       253 ~~CrICl~e~~------e~~~~l~-lPC~CkGslh~fH~~CL~~WL  291 (403)
                      ..|.||+....      ++++.+. ..|.     ..||..||..+.
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~-----~~~H~~Cl~~~~   42 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCG-----RSGHPTCLQFTL   42 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSC-----CEECTTTTTCCH
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCC-----CccchhhCCChh
Confidence            46999986541      1222222 3366     899999998653


No 99 
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.08  E-value=3.6  Score=33.53  Aligned_cols=47  Identities=21%  Similarity=0.587  Sum_probs=31.7

Q ss_pred             CCCCcceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      +.+..|.||...    ++++.- .|.     ..||..|+..=+..  ++...|+.|...
T Consensus        23 ~n~~~C~vC~~~----g~LL~CD~C~-----~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           23 DSATICRVCQKP----GDLVMCNQCE-----FCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSCCSSSCSS----SCCEECTTSS-----CEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCcCcCcCCC----CCEEECCCCC-----CceecccCCCCCCCCcCCCcCCccccCC
Confidence            446689999743    233332 255     89999999665533  467899999854


No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=57.22  E-value=6.4  Score=29.99  Aligned_cols=33  Identities=24%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             CCCCcceecccCcCCCCceEE-e-cCCCCCcCceecHhhH
Q 015667          250 EEEAVCRICLVELGEGGDMFK-L-ECSCKGELALAHKECA  287 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-l-PC~CkGslh~fH~~CL  287 (403)
                      +....|.+|...+..+...+. - .|.     .+||..|+
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~-----~WfH~~Cv   40 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQ-----KWFHRICT   40 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTC-----CEEEHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEecccCcc-----ccCchhcc
Confidence            445679999987754332222 2 355     89999996


No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.43  E-value=1.8  Score=32.74  Aligned_cols=46  Identities=24%  Similarity=0.506  Sum_probs=30.8

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      ..+..|.||...    ++++. -.|.     ..||..|+..=+..  ++...|+.|..
T Consensus         6 ~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~ppl~~~P~g~W~C~~C~~   54 (66)
T 1xwh_A            6 KNEDECAVCRDG----GELICCDGCP-----RAFHLACLSPPLREIPSGTWRCSSCLQ   54 (66)
T ss_dssp             SCCCSBSSSSCC----SSCEECSSCC-----CEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred             CCCCCCccCCCC----CCEEEcCCCC-----hhhcccccCCCcCcCCCCCeECccccC
Confidence            456779999743    23333 2255     89999998854432  36788999974


No 102
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=56.29  E-value=5.5  Score=33.29  Aligned_cols=44  Identities=20%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             CcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhhcCCccccccccccc
Q 015667          253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       253 ~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~kg~~tCplCr~~~~  307 (403)
                      ..|..|+-+..     -...|+=    ||+-..||..-|+.  ...|+||++.+.
T Consensus        29 ~nCKsCWf~~k-----~LV~C~d----HYLCl~CLtlmL~~--SdrCpIC~~pLP   72 (99)
T 2ko5_A           29 QFCKSCWFENK-----GLVECNN----HYLCLNCLTLLLSV--SNRCPICKMPLP   72 (99)
T ss_dssp             CCCCSSCSCCS-----SEEECSS----CEEEHHHHHHTCSS--SSEETTTTEECC
T ss_pred             ccChhhccccC-----Ceeeecc----hhhHHHHHHHHHhh--ccCCcccCCcCC
Confidence            45999975432     2445662    99999999998877  789999998875


No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.45  E-value=11  Score=29.36  Aligned_cols=48  Identities=21%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             CCCCcceecccCcCCCCceEEe----cCCCCCcCceecHhhHHHHHhh-------cCCccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKL----ECSCKGELALAHKECAVKWFTI-------KGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~l----PC~CkGslh~fH~~CL~~WL~~-------kg~~tCplCr~~  305 (403)
                      ++...| ||......  ..++-    -|.     .+||..|+--=-..       -..-.|+.|+..
T Consensus        14 ~~~~~C-iC~~~~~~--g~MI~CD~~~C~-----~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T 1wew_A           14 EIKVRC-VCGNSLET--DSMIQCEDPRCH-----VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCCCC-SSCCCCCC--SCEEECSSTTTC-----CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             CCCEEe-ECCCcCCC--CCEEEECCccCC-----ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence            455667 78654322  22221    355     69999997521111       125789999754


No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.19  E-value=3  Score=34.52  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=28.6

Q ss_pred             cceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       254 ~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      .|.||.....+++.++. -.|.     +.||..|++.=|..  ++...|+.|+.
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~C~-----~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDSCD-----RGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTTTC-----CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCcCCCccceEEcCCCC-----CeeecccCCCCCCCCCCCCeECCCCCC
Confidence            57777643222223333 2266     89999998765543  45689999974


No 105
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.40  E-value=1.7  Score=33.09  Aligned_cols=48  Identities=21%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             CCCCcceecccCcCCCCceEEecCC---CCCcCceecHhhHHHHHhh------cCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI------KGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~---CkGslh~fH~~CL~~WL~~------kg~~tCplCr~  304 (403)
                      ++...| ||......+  . .+-|-   |+   .+||..|+--=-..      -.+-.|+.||.
T Consensus         8 e~~v~C-~C~~~~~~g--~-mI~CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~   64 (68)
T 2rsd_A            8 EAKVRC-ICSSTMVND--S-MIQCEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL   64 (68)
T ss_dssp             SCEECC-TTCCCSCCS--C-EEECSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred             CCCEEe-ECCCCcCCC--C-EEEECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence            344557 785443322  2 23353   53   69999996310000      01467999974


No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.22  E-value=6.1  Score=32.63  Aligned_cols=33  Identities=18%  Similarity=0.506  Sum_probs=21.0

Q ss_pred             CCcceecccCcC-----CCCceEE-ecCCCCCcCceecHhhHHH
Q 015667          252 EAVCRICLVELG-----EGGDMFK-LECSCKGELALAHKECAVK  289 (403)
Q Consensus       252 e~~CrICl~e~~-----e~~~~l~-lPC~CkGslh~fH~~CL~~  289 (403)
                      ...|.+|+....     .+++.+. ..|.     ..||..||..
T Consensus         5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~-----~~~H~~Cl~~   43 (112)
T 3v43_A            5 IPICSFCLGTKEQNREKKPEELISCADCG-----NSGHPSCLKF   43 (112)
T ss_dssp             CSSBTTTCCCTTCCTTSCCCCCEECTTTC-----CEECHHHHTC
T ss_pred             CccccccCCchhhCcCCCchhceEhhhcC-----CCCCCchhcC
Confidence            457999986531     2223332 3366     8999999963


No 107
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=53.51  E-value=1.8  Score=32.01  Aligned_cols=47  Identities=26%  Similarity=0.597  Sum_probs=30.7

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCcccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDV  306 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~  306 (403)
                      .+..|.||...    ++++. -.|.     ..||..|+..=+..  ++...|+.|....
T Consensus         4 ~~~~C~vC~~~----g~ll~Cd~C~-----~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   53 (60)
T 2puy_A            4 HEDFCSVCRKS----GQLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQDQM   53 (60)
T ss_dssp             CCSSCTTTCCC----SSCEECSSSS-----CEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred             CCCCCcCCCCC----CcEEEcCCCC-----cCEECCcCCCCcCCCCCCceEChhccChh
Confidence            45679999743    22332 2255     89999999854432  3577899997543


No 108
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=52.33  E-value=2.3  Score=31.86  Aligned_cols=46  Identities=28%  Similarity=0.645  Sum_probs=27.2

Q ss_pred             CCCCcceecccCcCCCCceEEecC---CCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC---~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      ++...| ||.....  + . .+-|   .|.  ..+||..|+.  |..  ++...|+.|..
T Consensus         8 ~e~~~C-~C~~~~~--g-~-mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~   58 (60)
T 2vnf_A            8 NEPTYC-LCHQVSY--G-E-MIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ   58 (60)
T ss_dssp             -CCEET-TTTEECC--S-E-EEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred             CCCCEE-ECCCcCC--C-C-EEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence            345567 8865432  2 2 2233   343  1589999987  543  26778998864


No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=48.07  E-value=10  Score=31.15  Aligned_cols=32  Identities=16%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CCCCcceecccCcCCCCceEEec---CCCCCcCceecHhhHHHH
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE---CSCKGELALAHKECAVKW  290 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP---C~CkGslh~fH~~CL~~W  290 (403)
                      ..+..|.||- .+..+   .++|   |.     +.||..||.+=
T Consensus        13 ~~D~~C~VC~-~~t~~---~l~pCRvC~-----RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCE-VWTAE---SLFPCRVCT-----RVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTC-CCCSS---CCSSCSSSS-----SCCCHHHHHHH
T ss_pred             CCCcccCccc-ccccc---ceecccccc-----ccccHhhcccc
Confidence            3567899995 33222   2445   55     89999999986


No 110
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=45.91  E-value=2.8  Score=34.27  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             CCCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCccccc-ccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDV-CKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCpl-Cr~  304 (403)
                      ++...| ||..... ++.+.-=.|.|..  .+||..|+.  |..  ++...||. |+.
T Consensus        24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~   75 (90)
T 2jmi_A           24 QEEVYC-FCRNVSY-GPMVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE   75 (90)
T ss_dssp             CCSCCS-TTTCCCS-SSEECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred             CCCcEE-EeCCCCC-CCEEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence            445678 8975332 2211112255653  689999986  332  35789999 973


No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.07  E-value=12  Score=28.50  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             CCCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHh--hcCCccccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQD  305 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~--~kg~~tCplCr~~  305 (403)
                      ++...| ||...+..++..+. -.|.     .+||..|+.-=-.  ....-.|+.|+..
T Consensus        14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~-----~W~H~~Cvg~~~~~~~~~~~~C~~C~~~   66 (72)
T 1wee_A           14 NWKVDC-KCGTKDDDGERMLACDGCG-----VWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             SSEECC-TTCCCSCCSSCEEECSSSC-----EEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             CcceEe-eCCCccCCCCcEEECCCCC-----CccCCeeeccCccccCCCcEECCCccCC
Confidence            344568 78655433322222 2265     8999999753211  1235689888753


No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=44.35  E-value=3.5  Score=37.20  Aligned_cols=46  Identities=22%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             CCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      ++.|.+|...    ++.+  -  |.+--..||..|+..=+..  +|...|+.|+..
T Consensus         2 ~~~C~~C~~~----g~ll--~--Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKP----GDLV--M--CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCC----SSCC--C--CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCC----Ccee--E--CCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence            4579999743    2222  2  2333489999998654432  467899999865


No 113
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.12  E-value=5.4  Score=41.31  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=27.5

Q ss_pred             CCCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh---cCCcccccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDV  306 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~~  306 (403)
                      +...| ||...+..++..+. --|.     .+||..|+.-=-..   -+.-.|+.|+...
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   89 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECDICK-----DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH   89 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBTTTC-----CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred             CCeEE-eCCCcCCCCCCeEEccCCC-----CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence            34445 77655432222222 1244     89999998432111   1347899998653


No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=42.35  E-value=10  Score=31.33  Aligned_cols=50  Identities=26%  Similarity=0.607  Sum_probs=31.1

Q ss_pred             CcceecccCcCCCCceEEecC--CCCCcCceecHhhHHHH------H--hhcCCccccccccccc
Q 015667          253 AVCRICLVELGEGGDMFKLEC--SCKGELALAHKECAVKW------F--TIKGNKTCDVCKQDVQ  307 (403)
Q Consensus       253 ~~CrICl~e~~e~~~~l~lPC--~CkGslh~fH~~CL~~W------L--~~kg~~tCplCr~~~~  307 (403)
                      ..|.||...+..++.  .+-|  .|+   .+||..|+.-=      +  ...+...|+.|...-.
T Consensus         4 ~~C~iC~~p~~~~~~--mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~   63 (105)
T 2xb1_A            4 YPCGACRSEVNDDQD--AILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE   63 (105)
T ss_dssp             CBCTTTCSBCCTTSC--EEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred             CCCCCCCCccCCCCC--EEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence            469999887754332  3334  454   79999997411      0  0113578999987543


No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.86  E-value=2.9  Score=33.03  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=18.5

Q ss_pred             ceecHhhHHHHHhh--cCC-cccccccc
Q 015667          280 ALAHKECAVKWFTI--KGN-KTCDVCKQ  304 (403)
Q Consensus       280 h~fH~~CL~~WL~~--kg~-~tCplCr~  304 (403)
                      ..||..||..=|..  ++. ..|+.|+.
T Consensus        49 ~~yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           49 MAFHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             CEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             CccCcccCCCcccCCCCCCceECcCccc
Confidence            89999999866543  245 78999975


No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=39.24  E-value=4.1  Score=31.36  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=18.6

Q ss_pred             ceecHhhHHHHHhh--cC-Cccccccccc
Q 015667          280 ALAHKECAVKWFTI--KG-NKTCDVCKQD  305 (403)
Q Consensus       280 h~fH~~CL~~WL~~--kg-~~tCplCr~~  305 (403)
                      ..||..||..=|..  +| ...|+.|..+
T Consensus        41 ~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~   69 (70)
T 3asl_A           41 MAFHIYCLDPPLSSVPSEDEWYCPECRND   69 (70)
T ss_dssp             CEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred             CceecccCCCCcCCCCCCCCcCCcCccCc
Confidence            89999998743322  35 6789998753


No 117
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=37.97  E-value=9.1  Score=27.51  Aligned_cols=45  Identities=16%  Similarity=0.318  Sum_probs=25.1

Q ss_pred             cceecccCcCCCCceEEecCC--CCCcCceecHhhHHHHHh--hcCCccccccc
Q 015667          254 VCRICLVELGEGGDMFKLECS--CKGELALAHKECAVKWFT--IKGNKTCDVCK  303 (403)
Q Consensus       254 ~CrICl~e~~e~~~~l~lPC~--CkGslh~fH~~CL~~WL~--~kg~~tCplCr  303 (403)
                      .|-||...+.++ ..++ -|-  |.   .+||..|+.-=..  ....-.|+.|+
T Consensus         4 ~cc~C~~p~~~~-~~mI-~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDK-VDWV-QCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTT-CCEE-ECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCC-CcEE-EeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence            366787666432 2232 332  32   8999999753211  12467888875


No 118
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=35.66  E-value=20  Score=28.15  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=25.8

Q ss_pred             CCCcceecccCcCCCCceEEecCCCCCcCceecHhhHHHHH
Q 015667          251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWF  291 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~CkGslh~fH~~CL~~WL  291 (403)
                      ++..|.||++.+..+....-+.|.     |.|=+.|+..|.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~-----~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCE-----VSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTT-----EEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCC-----hHHhHHHCHHHh
Confidence            356799998764332223338899     999999999843


No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.18  E-value=7.3  Score=30.63  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=27.7

Q ss_pred             cceecccCcCCCCceEEe-cCCCCCcCceecHhhHHHHHhh--cC-Ccccccccc
Q 015667          254 VCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTI--KG-NKTCDVCKQ  304 (403)
Q Consensus       254 ~CrICl~e~~e~~~~l~l-PC~CkGslh~fH~~CL~~WL~~--kg-~~tCplCr~  304 (403)
                      .|.||.... +++.++.- .|.     ..||..||..=|..  ++ ...|+.|..
T Consensus        28 ~C~vC~~~~-~~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           28 SCRVCGGKH-EPNMQLLCDECN-----VAYHIYCLNPPLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             SCSSSCCCC-CSTTEEECSSSC-----CEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred             CCcCcCCcC-CCCCEEEcCCCC-----ccccccccCCCccCCCCCCCcCCcCccC
Confidence            688886432 22333332 266     89999998743322  35 678988864


No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.54  E-value=3.6  Score=34.23  Aligned_cols=48  Identities=17%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             cceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCccccccccccc
Q 015667          254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDVQ  307 (403)
Q Consensus       254 ~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~~~  307 (403)
                      .|.||..... ++.++. -.|.     ..||..|+..=|..  ++...|+.|...+.
T Consensus        60 ~C~~C~~~~~-~~~ll~Cd~C~-----~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~  110 (114)
T 2kwj_A           60 SCILCGTSEN-DDQLLFCDDCD-----RGYHMYCLNPPVAEPPEGSWSCHLCWELLK  110 (114)
T ss_dssp             CCTTTTCCTT-TTTEEECSSSC-----CEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred             ccCcccccCC-CCceEEcCCCC-----ccccccccCCCccCCCCCCeECccccchhh
Confidence            4677754332 223333 2266     89999998743322  35678999976553


No 121
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.50  E-value=9.7  Score=29.32  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=18.7

Q ss_pred             ceecHhhHHHHHhhcCCcccccccccc
Q 015667          280 ALAHKECAVKWFTIKGNKTCDVCKQDV  306 (403)
Q Consensus       280 h~fH~~CL~~WL~~kg~~tCplCr~~~  306 (403)
                      .+||..|+.-=-..++...|+.|....
T Consensus        30 ~WfH~~Cvgl~~~p~~~w~Cp~C~~~~   56 (70)
T 1x4i_A           30 EWFHYGCVGLTEAPKGKWYCPQCTAAM   56 (70)
T ss_dssp             CCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred             cCCcccccccCcCCCCCEECCCCCccc
Confidence            799999987211123567899998654


No 122
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.14  E-value=4.8  Score=30.39  Aligned_cols=46  Identities=26%  Similarity=0.573  Sum_probs=26.9

Q ss_pred             CCCCcceecccCcCCCCceEEec---CCCCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFKLE---CSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~lP---C~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      .+...| ||.... . + .+ +-   |.|+  ..+||..|+.  |..  ++...||.|+.
T Consensus         9 ~e~~yC-~C~~~~-~-g-~M-I~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~   59 (62)
T 2g6q_A            9 NEPTYC-LCNQVS-Y-G-EM-IGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG   59 (62)
T ss_dssp             -CCEET-TTTEEC-C-S-EE-EECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred             CCCcEE-ECCCCC-C-C-Ce-eeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence            345567 886532 2 2 22 23   3354  2699999987  432  25678999864


No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=29.79  E-value=17  Score=34.30  Aligned_cols=47  Identities=19%  Similarity=0.371  Sum_probs=25.5

Q ss_pred             CcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cC-Cccccccccc
Q 015667          253 AVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KG-NKTCDVCKQD  305 (403)
Q Consensus       253 ~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg-~~tCplCr~~  305 (403)
                      ..|.+|..... ++..+. -.|.     ..||..|+..=|..  +| ...|+.|..+
T Consensus       175 c~C~vC~~~~~-~~~lL~CD~C~-----~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~  225 (226)
T 3ask_A          175 CACHLCGGRQD-PDKQLMCDECD-----MAFHIYCLDPPLSSVPSEDEWYCPECRND  225 (226)
T ss_dssp             TSCSSSCCCCC---CCEECSSSC-----CEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred             CCCcCCCCCCC-CCCeEEcCCCC-----cceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence            36788864322 222322 2255     89999999854432  35 6789999753


No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.58  E-value=5.5  Score=29.71  Aligned_cols=45  Identities=31%  Similarity=0.596  Sum_probs=26.8

Q ss_pred             CCCcceecccCcCCCCceEEecCC---CCCcCceecHhhHHHHHhh--cCCcccccccc
Q 015667          251 EEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI--KGNKTCDVCKQ  304 (403)
Q Consensus       251 ee~~CrICl~e~~e~~~~l~lPC~---CkGslh~fH~~CL~~WL~~--kg~~tCplCr~  304 (403)
                      +...| ||.... . + . .+-|-   |..  .+||..|+.  |..  ++...||.|+.
T Consensus         8 e~~yC-~C~~~~-~-g-~-mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~   57 (59)
T 3c6w_A            8 EPTYC-LCHQVS-Y-G-E-MIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ   57 (59)
T ss_dssp             CCEET-TTTEEC-C-S-E-EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred             CCcEE-ECCCCC-C-C-C-eeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence            44567 886543 2 2 2 22333   432  599999987  433  25678999864


No 125
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.44  E-value=35  Score=26.12  Aligned_cols=48  Identities=17%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             CCcceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh---cCCccccccccc
Q 015667          252 EAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQD  305 (403)
Q Consensus       252 e~~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~---kg~~tCplCr~~  305 (403)
                      ...| ||...+..++..+. -.|.     .+||..|+.---..   -+.-.|+.|...
T Consensus        10 ~~yC-iC~~~~~~~~~MI~Cd~C~-----~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A           10 PVYC-VCRLPYDVTRFMIECDACK-----DWFHGSCVGVEEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             CEET-TTTEECCTTSCEEECTTTC-----CEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred             eeEE-ECCCcCCCCCCEEEcCCCC-----CCEecccccccccccCCCCEEECCCCccc
Confidence            3344 77655432222222 2255     89999998532111   135679999854


No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.78  E-value=26  Score=26.65  Aligned_cols=47  Identities=21%  Similarity=0.508  Sum_probs=27.1

Q ss_pred             CCCCcceecccCcCCCCceEE--ecCCCCCcCceecHhhHHHHH-hhcCCcccccccc
Q 015667          250 EEEAVCRICLVELGEGGDMFK--LECSCKGELALAHKECAVKWF-TIKGNKTCDVCKQ  304 (403)
Q Consensus       250 eee~~CrICl~e~~e~~~~l~--lPC~CkGslh~fH~~CL~~WL-~~kg~~tCplCr~  304 (403)
                      .+...| ||...+.  ++.++  -.|.     .+||..|+.-=- ...+.-.|+.|+.
T Consensus        17 ~~~~~C-iC~~~~~--~~~MIqCd~C~-----~WfH~~Cvgi~~~~~~~~~~C~~C~~   66 (68)
T 3o70_A           17 QGLVTC-FCMKPFA--GRPMIECNECH-----TWIHLSCAKIRKSNVPEVFVCQKCRD   66 (68)
T ss_dssp             TTCCCS-TTCCCCT--TCCEEECTTTC-----CEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred             CCceEe-ECCCcCC--CCCEEECCCCC-----ccccccccCcCcccCCCcEECCCCCC
Confidence            456678 9975543  22222  2265     899999975221 1123567887763


No 127
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.69  E-value=8.8  Score=31.33  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=26.8

Q ss_pred             cceecccCcCCCCceEE-ecCCCCCcCceecHhhHHHHHhh--cCCccccccccc
Q 015667          254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQD  305 (403)
Q Consensus       254 ~CrICl~e~~e~~~~l~-lPC~CkGslh~fH~~CL~~WL~~--kg~~tCplCr~~  305 (403)
                      .|.||..... ++.++. -.|.     ..||..|+..=+..  ++...|+.|..-
T Consensus        56 ~C~~C~~~~~-~~~ll~Cd~C~-----~~yH~~Cl~ppl~~~P~g~W~C~~C~~c  104 (111)
T 2ysm_A           56 VCQNCKQSGE-DSKMLVCDTCD-----KGYHTFCLQPVMKSVPTNGWKCKNCRIC  104 (111)
T ss_dssp             CCTTTCCCSC-CTTEEECSSSC-----CEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred             cccccCccCC-CCCeeECCCCC-----cHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence            4666654322 222333 2266     89999998753332  356788888654


No 128
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.39  E-value=32  Score=31.12  Aligned_cols=51  Identities=18%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCcceecccCcCCCCc---eEE-ecCCCCCcCceecHhhHHH------HHh---hcCCccccccccccc
Q 015667          252 EAVCRICLVELGEGGD---MFK-LECSCKGELALAHKECAVK------WFT---IKGNKTCDVCKQDVQ  307 (403)
Q Consensus       252 e~~CrICl~e~~e~~~---~l~-lPC~CkGslh~fH~~CL~~------WL~---~kg~~tCplCr~~~~  307 (403)
                      +..|.||...|.+++.   .+. --|.     .+||..|+.-      =+.   ....-.|+.|+..-.
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~-----~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCGKCD-----RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECTTTC-----CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             cCcCCCCcCccCCcccCCCeEECCCCC-----cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            4569999887766542   222 2366     9999999741      010   001468999986543


Done!