Query 015668
Match_columns 403
No_of_seqs 282 out of 1838
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0349 Putative DEAD-box RNA 100.0 8.7E-38 1.9E-42 303.9 13.5 173 43-250 88-262 (725)
2 KOG2626 Histone H3 (Lys4) meth 100.0 6.5E-31 1.4E-35 261.8 12.0 167 41-239 290-500 (544)
3 PF00622 SPRY: SPRY domain; I 99.9 1E-21 2.2E-26 166.1 14.7 116 87-234 1-124 (124)
4 smart00449 SPRY Domain in SPla 99.9 1.6E-21 3.5E-26 164.9 14.3 114 87-232 1-121 (122)
5 KOG2242 Scaffold/matrix specif 99.8 3.1E-22 6.8E-27 207.7 -1.8 353 32-400 27-382 (558)
6 COG4639 Predicted kinase [Gene 99.8 8E-19 1.7E-23 151.6 10.2 124 266-401 2-128 (168)
7 PF13671 AAA_33: AAA domain; P 99.8 1.3E-17 2.9E-22 144.4 15.4 122 268-396 1-124 (143)
8 KOG4030 Uncharacterized conser 99.7 8.9E-17 1.9E-21 137.0 16.1 164 36-245 20-190 (197)
9 KOG3953 SOCS box protein SSB-1 99.7 2.3E-16 5.1E-21 143.5 12.9 168 35-235 18-201 (242)
10 KOG2243 Ca2+ release channel ( 99.7 5.1E-17 1.1E-21 172.1 9.8 147 76-249 1092-1250(5019)
11 TIGR01663 PNK-3'Pase polynucle 99.6 4.1E-15 8.9E-20 154.3 14.3 103 263-392 366-470 (526)
12 PHA02530 pseT polynucleotide k 99.6 9.1E-15 2E-19 142.6 14.7 128 266-401 2-131 (300)
13 TIGR03574 selen_PSTK L-seryl-t 99.6 1.5E-14 3.1E-19 137.8 11.5 116 268-394 1-120 (249)
14 COG0645 Predicted kinase [Gene 99.6 7.8E-14 1.7E-18 122.9 14.4 120 267-392 2-126 (170)
15 COG4088 Predicted nucleotide k 99.6 1.7E-14 3.6E-19 130.3 9.7 126 267-400 2-132 (261)
16 PF08433 KTI12: Chromatin asso 99.5 1.6E-14 3.5E-19 138.8 9.6 123 267-399 2-130 (270)
17 PRK06762 hypothetical protein; 99.5 5.2E-14 1.1E-18 125.5 9.7 114 266-392 2-118 (166)
18 PF06414 Zeta_toxin: Zeta toxi 99.5 5.6E-14 1.2E-18 129.4 9.3 138 264-402 13-159 (199)
19 PF01591 6PF2K: 6-phosphofruct 99.4 3.1E-12 6.8E-17 119.2 14.3 128 264-393 10-147 (222)
20 cd00227 CPT Chloramphenicol (C 99.4 1.7E-12 3.8E-17 116.9 12.2 123 267-392 3-133 (175)
21 cd02021 GntK Gluconate kinase 99.4 2.9E-12 6.3E-17 112.2 11.5 113 268-391 1-119 (150)
22 cd02027 APSK Adenosine 5'-phos 99.3 1.4E-11 3E-16 108.3 12.7 112 268-389 1-116 (149)
23 PF01583 APS_kinase: Adenylyls 99.3 6.7E-12 1.5E-16 110.7 10.4 114 266-389 2-119 (156)
24 PRK12339 2-phosphoglycerate ki 99.3 3.7E-11 8.1E-16 110.5 14.8 130 265-401 2-151 (197)
25 KOG2243 Ca2+ release channel ( 99.3 6.5E-13 1.4E-17 141.7 3.0 152 74-249 656-832 (5019)
26 TIGR00455 apsK adenylylsulfate 99.3 6.8E-11 1.5E-15 107.3 13.3 115 264-388 16-134 (184)
27 KOG4367 Predicted Zn-finger pr 99.2 9.4E-11 2E-15 115.0 13.8 153 44-232 535-694 (699)
28 COG0529 CysC Adenylylsulfate k 99.2 1.1E-10 2.4E-15 103.5 12.7 119 262-390 19-141 (197)
29 TIGR01313 therm_gnt_kin carboh 99.2 4.4E-11 9.6E-16 106.2 10.0 109 269-391 1-115 (163)
30 TIGR03575 selen_PSTK_euk L-ser 99.2 6.5E-11 1.4E-15 117.0 11.7 131 268-399 1-184 (340)
31 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 2.5E-10 5.5E-15 103.1 12.9 117 268-392 1-126 (183)
32 COG4185 Uncharacterized protei 99.1 3E-10 6.6E-15 99.0 10.0 125 266-402 2-129 (187)
33 PRK00889 adenylylsulfate kinas 99.1 6.9E-10 1.5E-14 99.8 12.8 112 265-387 3-117 (175)
34 PRK14527 adenylate kinase; Pro 99.1 1.6E-09 3.5E-14 98.9 12.5 121 264-392 4-134 (191)
35 PRK05537 bifunctional sulfate 99.1 1.5E-09 3.2E-14 114.7 13.7 116 264-388 390-510 (568)
36 PF07931 CPT: Chloramphenicol 99.1 1.4E-09 3E-14 98.0 11.4 123 267-392 2-132 (174)
37 PRK14532 adenylate kinase; Pro 99.0 2.2E-09 4.7E-14 97.6 12.3 114 269-391 3-128 (188)
38 PRK05541 adenylylsulfate kinas 99.0 4E-09 8.7E-14 94.9 13.0 114 264-389 5-121 (176)
39 PRK05506 bifunctional sulfate 99.0 4E-09 8.6E-14 113.4 13.9 113 265-387 459-575 (632)
40 PRK14531 adenylate kinase; Pro 99.0 2.2E-09 4.7E-14 97.5 9.9 117 268-392 4-130 (183)
41 KOG3062 RNA polymerase II elon 99.0 7.5E-10 1.6E-14 101.4 6.1 119 267-393 2-125 (281)
42 PRK12337 2-phosphoglycerate ki 98.9 2.2E-08 4.7E-13 102.1 15.4 127 264-396 253-410 (475)
43 cd01428 ADK Adenylate kinase ( 98.9 2.2E-08 4.8E-13 91.0 13.7 117 269-392 2-127 (194)
44 PLN02200 adenylate kinase fami 98.9 2.5E-08 5.4E-13 94.2 14.3 119 262-391 39-167 (234)
45 PRK03846 adenylylsulfate kinas 98.9 1.9E-08 4.2E-13 92.4 13.2 115 264-387 22-139 (198)
46 TIGR01360 aden_kin_iso1 adenyl 98.9 2.6E-08 5.7E-13 89.9 12.7 116 265-392 2-129 (188)
47 PRK01184 hypothetical protein; 98.8 6.2E-08 1.3E-12 87.7 12.7 119 267-392 2-126 (184)
48 TIGR01351 adk adenylate kinase 98.8 3.8E-08 8.2E-13 91.3 11.3 114 269-391 2-125 (210)
49 PRK11545 gntK gluconate kinase 98.8 3.1E-08 6.7E-13 88.4 9.9 104 272-392 1-113 (163)
50 PRK12338 hypothetical protein; 98.8 1.5E-07 3.3E-12 92.2 15.4 125 265-394 3-154 (319)
51 KOG3354 Gluconate kinase [Carb 98.8 3.3E-08 7.1E-13 85.9 9.3 122 266-401 12-146 (191)
52 PTZ00322 6-phosphofructo-2-kin 98.8 7.7E-08 1.7E-12 104.0 13.9 126 265-392 214-348 (664)
53 PRK00279 adk adenylate kinase; 98.8 8.3E-08 1.8E-12 89.3 12.1 116 268-391 2-128 (215)
54 cd00464 SK Shikimate kinase (S 98.7 1.3E-07 2.8E-12 82.6 11.3 107 269-391 2-113 (154)
55 KOG1477 SPRY domain-containing 98.7 3.3E-08 7.1E-13 101.6 8.6 159 43-232 31-202 (469)
56 PRK09825 idnK D-gluconate kina 98.7 1.2E-07 2.6E-12 85.7 11.3 110 266-391 3-120 (176)
57 PRK14530 adenylate kinase; Pro 98.7 1.6E-07 3.5E-12 87.4 11.7 117 268-391 5-127 (215)
58 PF13207 AAA_17: AAA domain; P 98.6 4.2E-08 9.1E-13 82.3 5.8 34 268-304 1-34 (121)
59 PRK00625 shikimate kinase; Pro 98.6 2.6E-07 5.6E-12 83.3 10.9 113 268-392 2-118 (173)
60 PRK04220 2-phosphoglycerate ki 98.6 8.5E-07 1.8E-11 86.2 14.3 123 264-393 90-238 (301)
61 PRK00131 aroK shikimate kinase 98.6 3E-07 6.4E-12 81.8 10.2 40 265-307 3-42 (175)
62 COG3265 GntK Gluconate kinase 98.6 2.8E-07 6.1E-12 79.7 9.5 112 272-401 1-119 (161)
63 PRK13946 shikimate kinase; Pro 98.6 6.6E-07 1.4E-11 81.3 12.1 112 266-392 10-125 (184)
64 KOG0635 Adenosine 5'-phosphosu 98.6 3.8E-07 8.1E-12 79.0 9.0 115 265-389 30-148 (207)
65 PRK07261 topology modulation p 98.6 1.1E-07 2.4E-12 85.5 6.1 98 268-391 2-100 (171)
66 PLN02674 adenylate kinase 98.5 1E-06 2.2E-11 83.5 12.6 116 267-391 32-159 (244)
67 PRK02496 adk adenylate kinase; 98.5 4.6E-07 1E-11 82.0 9.5 117 268-392 3-130 (184)
68 PRK06217 hypothetical protein; 98.5 1.5E-07 3.3E-12 85.3 5.9 104 267-392 2-106 (183)
69 PRK13948 shikimate kinase; Pro 98.5 5.2E-07 1.1E-11 82.0 9.1 111 265-390 9-123 (182)
70 COG0563 Adk Adenylate kinase a 98.5 1.4E-06 3.1E-11 78.9 11.7 113 269-391 3-128 (178)
71 PRK03839 putative kinase; Prov 98.5 4.5E-07 9.8E-12 81.8 8.3 99 268-391 2-101 (180)
72 PRK13947 shikimate kinase; Pro 98.5 7.1E-07 1.5E-11 79.6 9.4 109 268-391 3-115 (171)
73 PRK14529 adenylate kinase; Pro 98.5 1.2E-06 2.7E-11 82.0 10.8 115 269-391 3-127 (223)
74 COG0703 AroK Shikimate kinase 98.5 2.3E-06 5E-11 76.5 11.9 105 268-388 4-113 (172)
75 PTZ00088 adenylate kinase 1; P 98.4 1.5E-06 3.2E-11 81.9 10.9 112 269-391 9-131 (229)
76 PRK14528 adenylate kinase; Pro 98.4 3.5E-06 7.6E-11 76.8 12.7 118 267-393 2-131 (186)
77 cd01672 TMPK Thymidine monopho 98.4 4.9E-06 1.1E-10 75.4 13.7 122 268-392 2-148 (200)
78 PRK08118 topology modulation p 98.4 1.4E-06 2.9E-11 78.2 9.7 98 268-392 3-101 (167)
79 PRK06547 hypothetical protein; 98.4 7.8E-07 1.7E-11 80.1 8.1 114 264-391 13-139 (172)
80 PRK13949 shikimate kinase; Pro 98.4 2.6E-06 5.6E-11 76.5 11.4 36 268-306 3-38 (169)
81 PRK04040 adenylate kinase; Pro 98.4 1.4E-06 3E-11 79.7 9.7 40 266-306 2-41 (188)
82 PRK13808 adenylate kinase; Pro 98.4 3.7E-06 8E-11 83.1 12.6 113 269-391 3-128 (333)
83 PF00406 ADK: Adenylate kinase 98.4 4.1E-06 9E-11 73.4 11.7 111 271-389 1-122 (151)
84 KOG3079 Uridylate kinase/adeny 98.4 1.1E-05 2.3E-10 72.4 13.7 122 264-393 6-136 (195)
85 PRK04182 cytidylate kinase; Pr 98.4 7.4E-07 1.6E-11 79.8 6.4 107 268-391 2-113 (180)
86 PRK10078 ribose 1,5-bisphospho 98.4 2.2E-06 4.8E-11 77.9 9.5 115 267-392 3-133 (186)
87 PRK05057 aroK shikimate kinase 98.3 4.2E-06 9E-11 75.3 11.0 110 266-391 4-118 (172)
88 KOG2134 Polynucleotide kinase 98.3 9.3E-07 2E-11 87.0 7.1 99 266-391 269-369 (422)
89 KOG4622 Predicted nucleotide k 98.3 9.1E-07 2E-11 79.7 6.5 123 267-392 2-144 (291)
90 TIGR02322 phosphon_PhnN phosph 98.3 2.6E-06 5.7E-11 76.6 9.5 118 267-392 2-133 (179)
91 TIGR02173 cyt_kin_arch cytidyl 98.3 2.5E-06 5.4E-11 75.7 9.0 110 268-391 2-113 (171)
92 PLN02459 probable adenylate ki 98.3 4.4E-06 9.6E-11 79.8 10.8 113 268-391 31-154 (261)
93 TIGR00041 DTMP_kinase thymidyl 98.3 1.7E-05 3.7E-10 72.2 14.2 123 266-392 3-150 (195)
94 cd02020 CMPK Cytidine monophos 98.3 2.7E-06 6E-11 73.4 8.1 105 268-393 1-106 (147)
95 COG1102 Cmk Cytidylate kinase 98.3 1.2E-05 2.6E-10 70.8 11.8 104 268-391 2-112 (179)
96 TIGR03263 guanyl_kin guanylate 98.3 6.1E-06 1.3E-10 74.2 10.0 25 267-291 2-26 (180)
97 PRK14526 adenylate kinase; Pro 98.3 4.6E-06 9.9E-11 77.6 9.4 112 269-391 3-123 (211)
98 PRK14737 gmk guanylate kinase; 98.3 4.9E-06 1.1E-10 75.9 9.3 27 265-291 3-29 (186)
99 PRK00698 tmk thymidylate kinas 98.3 2.1E-05 4.5E-10 72.0 13.6 123 266-391 3-149 (205)
100 PRK03731 aroL shikimate kinase 98.2 1.2E-05 2.6E-10 71.7 11.0 39 267-308 3-41 (171)
101 PRK08233 hypothetical protein; 98.2 5E-06 1.1E-10 74.6 8.4 33 266-298 3-35 (182)
102 PRK13973 thymidylate kinase; P 98.2 3.3E-05 7.1E-10 71.9 14.0 124 266-392 3-151 (213)
103 KOG0234 Fructose-6-phosphate 2 98.2 1.3E-05 2.8E-10 80.8 11.6 122 264-389 26-160 (438)
104 COG2074 2-phosphoglycerate kin 98.2 2.9E-05 6.3E-10 72.9 12.9 127 262-394 85-234 (299)
105 PF13238 AAA_18: AAA domain; P 98.2 2.8E-06 6.2E-11 71.3 5.3 105 269-393 1-115 (129)
106 PRK06696 uridine kinase; Valid 98.1 6.3E-06 1.4E-10 77.2 7.8 40 264-303 20-61 (223)
107 cd01673 dNK Deoxyribonucleosid 98.1 1.5E-05 3.2E-10 72.6 9.8 24 268-291 1-24 (193)
108 PRK14730 coaE dephospho-CoA ki 98.1 1.4E-05 3E-10 73.4 9.1 39 267-308 2-40 (195)
109 PRK08356 hypothetical protein; 98.1 3.5E-05 7.7E-10 70.6 11.7 114 266-392 5-137 (195)
110 TIGR00152 dephospho-CoA kinase 98.1 1.5E-05 3.3E-10 72.5 8.7 37 268-307 1-37 (188)
111 PRK13975 thymidylate kinase; P 98.1 3.6E-05 7.8E-10 70.1 11.2 116 267-391 3-135 (196)
112 PRK00300 gmk guanylate kinase; 98.1 4.8E-05 1E-09 69.9 12.0 27 265-291 4-30 (205)
113 PRK08154 anaerobic benzoate ca 98.1 2E-05 4.3E-10 77.6 9.8 114 266-391 133-248 (309)
114 PRK00081 coaE dephospho-CoA ki 98.0 3.5E-05 7.6E-10 70.7 9.7 38 266-307 2-39 (194)
115 PRK06761 hypothetical protein; 98.0 5.7E-05 1.2E-09 73.2 11.3 120 267-391 4-128 (282)
116 COG3896 Chloramphenicol 3-O-ph 98.0 0.00012 2.6E-09 64.2 12.0 129 262-392 19-162 (205)
117 PRK05416 glmZ(sRNA)-inactivati 98.0 8.8E-05 1.9E-09 72.2 12.4 97 265-389 5-105 (288)
118 smart00072 GuKc Guanylate kina 98.0 2.1E-05 4.5E-10 71.4 7.6 26 266-291 2-27 (184)
119 COG0194 Gmk Guanylate kinase [ 98.0 1.4E-05 3E-10 72.0 5.9 117 265-392 3-137 (191)
120 PRK13951 bifunctional shikimat 98.0 7.1E-05 1.5E-09 78.1 12.0 36 269-307 3-38 (488)
121 PRK05480 uridine/cytidine kina 97.9 2.1E-05 4.4E-10 72.8 6.8 39 265-303 5-43 (209)
122 cd02022 DPCK Dephospho-coenzym 97.9 4E-05 8.8E-10 69.2 8.6 36 268-307 1-36 (179)
123 PRK14021 bifunctional shikimat 97.9 0.00011 2.4E-09 77.8 12.8 114 266-390 6-123 (542)
124 cd02024 NRK1 Nicotinamide ribo 97.9 2.5E-05 5.4E-10 71.3 6.5 34 268-303 1-34 (187)
125 PLN02199 shikimate kinase 97.9 9.1E-05 2E-09 71.9 10.3 108 266-389 102-214 (303)
126 PRK14738 gmk guanylate kinase; 97.9 3.8E-05 8.2E-10 71.1 7.2 28 263-290 10-37 (206)
127 cd02030 NDUO42 NADH:Ubiquinone 97.9 0.00015 3.3E-09 67.7 11.3 24 268-291 1-24 (219)
128 PF08303 tRNA_lig_kinase: tRNA 97.8 0.00019 4.1E-09 63.6 10.9 102 268-391 1-119 (168)
129 PLN02924 thymidylate kinase 97.8 0.00018 3.9E-09 67.4 11.5 120 265-388 15-154 (220)
130 PLN02422 dephospho-CoA kinase 97.8 0.00018 3.8E-09 67.9 10.7 37 267-307 2-38 (232)
131 PRK14734 coaE dephospho-CoA ki 97.8 0.00016 3.6E-09 66.6 10.0 37 267-307 2-38 (200)
132 PRK07667 uridine kinase; Provi 97.7 0.0002 4.4E-09 65.5 10.0 38 266-303 17-56 (193)
133 PRK13974 thymidylate kinase; P 97.7 0.00033 7.2E-09 65.1 11.6 122 266-391 3-156 (212)
134 TIGR00235 udk uridine kinase. 97.7 9.8E-05 2.1E-09 68.2 7.9 40 264-303 4-43 (207)
135 KOG3347 Predicted nucleotide k 97.7 0.00013 2.9E-09 63.4 7.9 101 269-391 10-114 (176)
136 PLN02842 nucleotide kinase 97.7 0.00032 6.9E-09 72.9 11.9 110 270-391 1-122 (505)
137 COG1428 Deoxynucleoside kinase 97.7 0.00032 6.8E-09 64.6 10.4 126 266-400 4-157 (216)
138 PF00625 Guanylate_kin: Guanyl 97.7 0.00013 2.7E-09 66.1 7.7 27 266-292 2-28 (183)
139 PF01202 SKI: Shikimate kinase 97.7 0.00026 5.7E-09 62.6 9.2 103 275-392 1-107 (158)
140 cd02025 PanK Pantothenate kina 97.7 0.00012 2.6E-09 68.6 7.4 36 268-303 1-40 (220)
141 PLN02772 guanylate kinase 97.5 0.00056 1.2E-08 68.9 10.5 27 265-291 134-160 (398)
142 PRK07933 thymidylate kinase; V 97.5 0.00078 1.7E-08 62.7 10.9 121 268-392 2-155 (213)
143 PLN02165 adenylate isopentenyl 97.5 0.00062 1.3E-08 67.3 10.3 35 266-303 43-77 (334)
144 COG0237 CoaE Dephospho-CoA kin 97.5 0.0013 2.8E-08 60.7 11.8 36 266-305 2-37 (201)
145 cd00071 GMPK Guanosine monopho 97.5 0.00016 3.5E-09 62.5 5.1 24 268-291 1-24 (137)
146 PRK14733 coaE dephospho-CoA ki 97.5 0.001 2.2E-08 61.6 10.6 39 266-307 6-44 (204)
147 PRK14732 coaE dephospho-CoA ki 97.5 0.00061 1.3E-08 62.7 8.9 36 268-307 1-36 (196)
148 PRK14731 coaE dephospho-CoA ki 97.5 0.0013 2.7E-08 61.1 11.0 39 265-307 4-42 (208)
149 COG0572 Udk Uridine kinase [Nu 97.4 0.00079 1.7E-08 62.5 9.3 40 265-304 7-46 (218)
150 PTZ00451 dephospho-CoA kinase; 97.4 0.0005 1.1E-08 65.3 8.2 39 267-308 2-40 (244)
151 cd02019 NK Nucleoside/nucleoti 97.4 0.00017 3.7E-09 54.8 3.7 31 268-298 1-31 (69)
152 PF02223 Thymidylate_kin: Thym 97.3 0.0029 6.3E-08 57.2 11.8 116 272-392 2-141 (186)
153 PF00004 AAA: ATPase family as 97.3 0.00046 9.9E-09 58.0 6.0 35 269-304 1-35 (132)
154 PLN02348 phosphoribulokinase 97.3 0.00058 1.3E-08 68.8 6.9 42 262-303 45-103 (395)
155 PRK05439 pantothenate kinase; 97.2 0.0016 3.5E-08 64.0 9.6 42 262-303 82-127 (311)
156 TIGR00017 cmk cytidylate kinas 97.2 0.0018 3.8E-08 60.6 9.2 35 267-304 3-37 (217)
157 COG1936 Predicted nucleotide k 97.2 0.0022 4.7E-08 57.3 8.6 99 268-391 2-104 (180)
158 cd03115 SRP The signal recogni 97.1 0.001 2.2E-08 59.4 6.4 36 268-303 2-39 (173)
159 PRK13976 thymidylate kinase; P 97.1 0.0055 1.2E-07 56.9 11.2 117 268-390 2-145 (209)
160 COG3709 Uncharacterized compon 97.1 0.0014 3E-08 57.9 6.6 121 265-398 4-143 (192)
161 COG0541 Ffh Signal recognition 97.1 0.0017 3.8E-08 65.6 8.2 41 263-303 97-139 (451)
162 cd02028 UMPK_like Uridine mono 97.1 0.00039 8.5E-09 62.9 3.3 38 268-305 1-40 (179)
163 PLN02318 phosphoribulokinase/u 97.1 0.0012 2.7E-08 69.6 7.4 38 264-303 63-100 (656)
164 cd02023 UMPK Uridine monophosp 97.1 0.00042 9.1E-09 63.4 3.5 37 268-304 1-37 (198)
165 PRK03333 coaE dephospho-CoA ki 97.1 0.0024 5.3E-08 65.0 9.2 38 267-308 2-39 (395)
166 KOG3078 Adenylate kinase [Nucl 97.1 0.0034 7.4E-08 58.9 9.3 114 266-391 15-139 (235)
167 TIGR01618 phage_P_loop phage n 97.1 0.001 2.2E-08 62.3 5.8 74 266-351 12-89 (220)
168 PF01121 CoaE: Dephospho-CoA k 97.1 0.0051 1.1E-07 55.8 10.2 37 268-308 2-38 (180)
169 TIGR00959 ffh signal recogniti 97.0 0.0025 5.5E-08 65.4 9.1 41 264-304 97-140 (428)
170 KOG1477 SPRY domain-containing 97.0 0.00028 6.1E-09 72.9 2.1 52 137-191 2-55 (469)
171 PRK05800 cobU adenosylcobinami 97.0 0.0023 4.9E-08 57.5 7.7 32 268-300 3-34 (170)
172 PRK10867 signal recognition pa 97.0 0.002 4.3E-08 66.2 8.2 41 264-304 98-141 (433)
173 PTZ00301 uridine kinase; Provi 97.0 0.00067 1.4E-08 63.1 4.3 38 266-303 3-44 (210)
174 PF00448 SRP54: SRP54-type pro 97.0 0.0046 1E-07 56.9 9.7 37 266-302 1-39 (196)
175 PRK14974 cell division protein 97.0 0.0022 4.7E-08 63.8 7.5 39 265-303 139-179 (336)
176 PRK07429 phosphoribulokinase; 97.0 0.0061 1.3E-07 60.5 10.6 40 264-303 6-45 (327)
177 PRK09087 hypothetical protein; 96.9 0.0029 6.3E-08 59.5 7.8 125 267-402 45-177 (226)
178 PF00485 PRK: Phosphoribulokin 96.9 0.00086 1.9E-08 61.3 4.0 35 268-302 1-41 (194)
179 PF13521 AAA_28: AAA domain; P 96.9 0.0026 5.6E-08 56.2 7.0 21 269-289 2-22 (163)
180 KOG4238 Bifunctional ATP sulfu 96.9 0.0031 6.8E-08 62.0 7.9 116 264-390 48-170 (627)
181 smart00382 AAA ATPases associa 96.9 0.0011 2.3E-08 55.2 4.2 38 266-303 2-41 (148)
182 PRK00771 signal recognition pa 96.9 0.0061 1.3E-07 62.8 10.4 40 264-303 93-134 (437)
183 PHA00729 NTP-binding motif con 96.9 0.0096 2.1E-07 55.8 10.8 25 266-290 17-41 (226)
184 COG0125 Tmk Thymidylate kinase 96.9 0.017 3.6E-07 53.7 12.1 126 266-393 3-151 (208)
185 cd00009 AAA The AAA+ (ATPases 96.9 0.015 3.2E-07 48.7 11.0 25 266-290 19-43 (151)
186 TIGR01425 SRP54_euk signal rec 96.8 0.0026 5.5E-08 65.2 7.0 41 264-304 98-140 (429)
187 PRK13477 bifunctional pantoate 96.8 0.0022 4.8E-08 67.1 6.7 39 265-306 283-321 (512)
188 PF13173 AAA_14: AAA domain 96.8 0.0092 2E-07 50.6 9.2 94 267-380 3-98 (128)
189 PF03668 ATP_bind_2: P-loop AT 96.8 0.0068 1.5E-07 58.5 9.2 98 266-389 1-101 (284)
190 KOG0738 AAA+-type ATPase [Post 96.7 0.012 2.6E-07 58.8 10.6 26 266-291 245-270 (491)
191 CHL00181 cbbX CbbX; Provisiona 96.7 0.016 3.4E-07 56.6 11.3 40 266-305 59-104 (287)
192 PRK08099 bifunctional DNA-bind 96.7 0.0055 1.2E-07 62.5 8.4 45 264-308 217-261 (399)
193 TIGR02881 spore_V_K stage V sp 96.7 0.0092 2E-07 57.2 9.5 25 266-290 42-66 (261)
194 KOG3877 NADH:ubiquinone oxidor 96.7 0.021 4.6E-07 54.6 11.5 28 265-292 70-97 (393)
195 KOG3308 Uncharacterized protei 96.7 0.0035 7.6E-08 57.2 6.0 36 267-304 5-40 (225)
196 KOG3220 Similar to bacterial d 96.7 0.025 5.4E-07 51.8 11.2 37 267-307 2-38 (225)
197 PRK10416 signal recognition pa 96.6 0.0022 4.7E-08 63.4 4.7 40 264-303 112-153 (318)
198 TIGR03015 pepcterm_ATPase puta 96.6 0.042 9.1E-07 52.3 13.1 27 266-292 43-69 (269)
199 PF13401 AAA_22: AAA domain; P 96.6 0.0098 2.1E-07 50.0 7.6 26 265-290 3-28 (131)
200 PRK14086 dnaA chromosomal repl 96.5 0.014 3E-07 62.3 10.0 40 268-307 316-359 (617)
201 cd03228 ABCC_MRP_Like The MRP 96.5 0.053 1.1E-06 48.3 12.5 117 265-383 27-158 (171)
202 PRK08903 DnaA regulatory inact 96.5 0.011 2.3E-07 55.3 8.2 40 266-305 42-83 (227)
203 TIGR00554 panK_bact pantothena 96.5 0.0029 6.2E-08 61.7 4.4 40 263-302 59-102 (290)
204 TIGR00064 ftsY signal recognit 96.5 0.0071 1.5E-07 58.5 7.0 39 264-302 70-110 (272)
205 PRK08084 DNA replication initi 96.5 0.012 2.5E-07 55.6 8.2 36 267-302 46-83 (235)
206 TIGR02640 gas_vesic_GvpN gas v 96.5 0.012 2.6E-07 56.5 8.4 32 267-299 22-53 (262)
207 PRK00091 miaA tRNA delta(2)-is 96.5 0.0023 4.9E-08 63.0 3.5 34 266-302 4-37 (307)
208 PHA03132 thymidine kinase; Pro 96.4 0.029 6.4E-07 59.4 11.8 25 266-290 257-281 (580)
209 PRK00149 dnaA chromosomal repl 96.4 0.032 7E-07 57.8 12.0 41 267-307 149-193 (450)
210 PF13245 AAA_19: Part of AAA d 96.4 0.0056 1.2E-07 47.5 4.6 24 266-289 10-33 (76)
211 TIGR00362 DnaA chromosomal rep 96.4 0.021 4.5E-07 58.3 10.0 40 267-306 137-180 (405)
212 PRK06620 hypothetical protein; 96.4 0.0075 1.6E-07 56.2 6.1 25 267-291 45-69 (214)
213 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0025 5.4E-08 63.7 2.9 28 265-292 77-104 (361)
214 cd01122 GP4d_helicase GP4d_hel 96.3 0.067 1.5E-06 51.2 12.6 37 265-301 29-68 (271)
215 cd01120 RecA-like_NTPases RecA 96.3 0.029 6.2E-07 48.3 9.2 34 268-301 1-36 (165)
216 cd03230 ABC_DR_subfamily_A Thi 96.3 0.067 1.4E-06 47.8 11.7 116 265-380 25-154 (173)
217 PF01745 IPT: Isopentenyl tran 96.3 0.0075 1.6E-07 55.8 5.4 117 266-392 1-140 (233)
218 PRK14088 dnaA chromosomal repl 96.3 0.047 1E-06 56.5 11.9 40 268-307 132-175 (440)
219 cd03246 ABCC_Protease_Secretio 96.3 0.049 1.1E-06 48.6 10.7 118 265-383 27-159 (173)
220 TIGR00174 miaA tRNA isopenteny 96.2 0.0031 6.8E-08 61.3 3.0 32 268-302 1-32 (287)
221 COG1618 Predicted nucleotide k 96.2 0.029 6.4E-07 49.7 8.7 27 267-293 6-32 (179)
222 TIGR02880 cbbX_cfxQ probable R 96.2 0.038 8.2E-07 53.8 10.5 38 268-305 60-103 (284)
223 PRK14962 DNA polymerase III su 96.2 0.03 6.5E-07 58.4 10.3 28 264-291 34-61 (472)
224 PF05496 RuvB_N: Holliday junc 96.2 0.023 5.1E-07 53.2 8.3 33 266-299 50-82 (233)
225 PF07728 AAA_5: AAA domain (dy 96.1 0.005 1.1E-07 52.7 3.5 24 269-292 2-25 (139)
226 COG0552 FtsY Signal recognitio 96.1 0.031 6.8E-07 55.0 9.2 43 263-305 136-180 (340)
227 PRK05642 DNA replication initi 96.1 0.017 3.7E-07 54.5 7.4 38 267-304 46-85 (234)
228 cd01130 VirB11-like_ATPase Typ 96.1 0.011 2.3E-07 53.7 5.6 126 266-397 25-154 (186)
229 PRK06893 DNA replication initi 96.1 0.022 4.8E-07 53.5 7.8 24 267-290 40-63 (229)
230 cd03238 ABC_UvrA The excision 96.0 0.1 2.3E-06 47.0 11.8 109 265-382 20-151 (176)
231 KOG0780 Signal recognition par 96.0 0.021 4.5E-07 57.1 7.5 101 262-367 97-206 (483)
232 PRK14722 flhF flagellar biosyn 96.0 0.035 7.6E-07 56.0 9.4 40 265-304 136-179 (374)
233 PRK08727 hypothetical protein; 96.0 0.054 1.2E-06 51.0 10.1 36 267-302 42-79 (233)
234 PHA02544 44 clamp loader, smal 96.0 0.088 1.9E-06 51.6 12.0 34 265-299 42-75 (316)
235 cd03232 ABC_PDR_domain2 The pl 96.0 0.12 2.7E-06 46.9 12.1 117 265-381 32-169 (192)
236 PRK08116 hypothetical protein; 96.0 0.063 1.4E-06 51.8 10.6 42 266-307 114-157 (268)
237 cd03247 ABCC_cytochrome_bd The 95.9 0.11 2.3E-06 46.7 11.3 118 265-383 27-160 (178)
238 PF03029 ATP_bind_1: Conserved 95.9 0.0053 1.1E-07 58.2 2.9 31 271-301 1-33 (238)
239 PRK15453 phosphoribulokinase; 95.9 0.0065 1.4E-07 58.8 3.5 38 266-303 5-44 (290)
240 PRK12402 replication factor C 95.9 0.078 1.7E-06 52.2 11.3 35 268-302 38-76 (337)
241 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.028 6E-07 52.1 7.7 39 265-303 37-77 (226)
242 KOG1384 tRNA delta(2)-isopente 95.9 0.086 1.9E-06 51.7 11.0 120 266-391 7-159 (348)
243 KOG1533 Predicted GTPase [Gene 95.9 0.057 1.2E-06 50.7 9.4 32 269-301 5-39 (290)
244 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.037 8.1E-07 52.2 8.5 36 266-301 21-58 (237)
245 PRK12377 putative replication 95.9 0.053 1.1E-06 51.8 9.5 43 266-308 101-145 (248)
246 cd03214 ABC_Iron-Siderophores_ 95.9 0.067 1.4E-06 48.1 9.8 112 265-380 24-157 (180)
247 cd00984 DnaB_C DnaB helicase C 95.9 0.041 8.8E-07 51.7 8.7 36 266-301 13-51 (242)
248 PF05729 NACHT: NACHT domain 95.9 0.0057 1.2E-07 53.2 2.7 25 267-291 1-25 (166)
249 COG2019 AdkA Archaeal adenylat 95.8 0.03 6.5E-07 49.9 7.0 38 266-305 4-41 (189)
250 COG1072 CoaA Panthothenate kin 95.8 0.03 6.6E-07 53.7 7.6 130 262-396 78-237 (283)
251 PTZ00202 tuzin; Provisional 95.8 0.12 2.5E-06 53.3 12.1 106 265-380 285-399 (550)
252 TIGR01526 nadR_NMN_Atrans nico 95.8 0.046 9.9E-07 54.3 9.2 27 266-292 162-188 (325)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.16 3.5E-06 44.0 11.7 102 265-383 25-130 (144)
254 PRK14956 DNA polymerase III su 95.8 0.11 2.4E-06 54.1 12.2 28 264-291 38-65 (484)
255 PLN02840 tRNA dimethylallyltra 95.8 0.0093 2E-07 60.9 4.3 35 265-302 20-54 (421)
256 PRK11889 flhF flagellar biosyn 95.8 0.031 6.7E-07 56.7 7.9 40 265-304 240-281 (436)
257 PLN02748 tRNA dimethylallyltra 95.8 0.011 2.4E-07 61.3 4.9 36 264-302 20-55 (468)
258 COG3911 Predicted ATPase [Gene 95.8 0.056 1.2E-06 47.3 8.4 43 266-309 9-51 (183)
259 PRK13695 putative NTPase; Prov 95.8 0.064 1.4E-06 47.9 9.3 23 268-290 2-24 (174)
260 COG2884 FtsE Predicted ATPase 95.8 0.19 4.1E-06 45.9 12.1 56 336-391 147-207 (223)
261 cd03222 ABC_RNaseL_inhibitor T 95.8 0.063 1.4E-06 48.5 9.2 111 265-390 24-141 (177)
262 cd02026 PRK Phosphoribulokinas 95.8 0.0074 1.6E-07 58.4 3.3 36 268-303 1-36 (273)
263 TIGR00150 HI0065_YjeE ATPase, 95.8 0.0097 2.1E-07 51.3 3.6 27 265-291 21-47 (133)
264 PRK00023 cmk cytidylate kinase 95.7 0.0091 2E-07 56.1 3.6 35 266-303 4-38 (225)
265 cd00544 CobU Adenosylcobinamid 95.7 0.01 2.3E-07 53.2 3.8 32 268-300 1-32 (169)
266 COG1222 RPT1 ATP-dependent 26S 95.7 0.075 1.6E-06 52.8 9.9 85 265-368 184-281 (406)
267 PRK09270 nucleoside triphospha 95.7 0.01 2.2E-07 55.8 3.7 39 264-302 31-72 (229)
268 PLN03025 replication factor C 95.7 0.043 9.4E-07 54.1 8.3 22 269-290 37-58 (319)
269 cd03229 ABC_Class3 This class 95.7 0.14 3E-06 45.9 10.9 119 265-383 25-164 (178)
270 PRK10751 molybdopterin-guanine 95.6 0.011 2.4E-07 53.3 3.6 28 265-292 5-32 (173)
271 cd02029 PRK_like Phosphoribulo 95.6 0.007 1.5E-07 58.2 2.4 36 268-303 1-38 (277)
272 PRK12422 chromosomal replicati 95.6 0.095 2.1E-06 54.3 10.9 38 267-304 142-181 (445)
273 PRK03992 proteasome-activating 95.6 0.033 7.2E-07 56.6 7.5 38 266-304 165-202 (389)
274 PF04665 Pox_A32: Poxvirus A32 95.6 0.12 2.6E-06 49.0 10.7 27 266-292 13-39 (241)
275 PLN00020 ribulose bisphosphate 95.6 0.046 9.9E-07 54.9 7.9 44 262-306 144-187 (413)
276 COG2256 MGS1 ATPase related to 95.5 0.065 1.4E-06 54.0 8.8 38 262-300 44-81 (436)
277 PLN02796 D-glycerate 3-kinase 95.5 0.014 3.1E-07 58.0 4.2 39 264-302 98-138 (347)
278 PRK09183 transposase/IS protei 95.5 0.14 3E-06 49.1 10.9 41 266-306 102-144 (259)
279 PTZ00454 26S protease regulato 95.5 0.052 1.1E-06 55.4 8.4 35 265-300 178-212 (398)
280 cd03216 ABC_Carb_Monos_I This 95.5 0.22 4.7E-06 44.1 11.3 106 265-380 25-141 (163)
281 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.097 2.1E-06 48.8 9.5 37 265-301 19-57 (229)
282 cd03215 ABC_Carb_Monos_II This 95.4 0.18 3.8E-06 45.4 10.8 115 266-380 26-163 (182)
283 COG3839 MalK ABC-type sugar tr 95.4 0.12 2.6E-06 51.4 10.4 37 264-300 27-64 (338)
284 cd01131 PilT Pilus retraction 95.4 0.012 2.5E-07 54.1 3.1 24 268-291 3-26 (198)
285 TIGR03499 FlhF flagellar biosy 95.4 0.014 3.1E-07 56.6 3.7 38 265-302 193-234 (282)
286 COG1341 Predicted GTPase or GT 95.4 0.1 2.2E-06 52.6 9.8 92 262-357 69-185 (398)
287 COG1855 ATPase (PilT family) [ 95.4 0.01 2.2E-07 60.4 2.6 30 266-295 263-292 (604)
288 TIGR01241 FtsH_fam ATP-depende 95.3 0.057 1.2E-06 56.7 8.3 39 266-305 88-126 (495)
289 TIGR01242 26Sp45 26S proteasom 95.3 0.069 1.5E-06 53.7 8.5 34 266-300 156-189 (364)
290 PRK13342 recombination factor 95.3 0.13 2.8E-06 52.7 10.6 33 266-299 36-68 (413)
291 PF00308 Bac_DnaA: Bacterial d 95.3 0.058 1.3E-06 50.4 7.4 39 268-306 36-78 (219)
292 PRK06921 hypothetical protein; 95.3 0.26 5.7E-06 47.4 12.1 41 266-306 117-160 (266)
293 PRK14964 DNA polymerase III su 95.3 0.21 4.6E-06 52.3 12.1 27 264-290 33-59 (491)
294 PF02367 UPF0079: Uncharacteri 95.3 0.022 4.8E-07 48.4 4.0 28 265-292 14-41 (123)
295 cd00820 PEPCK_HprK Phosphoenol 95.3 0.022 4.8E-07 47.1 3.9 22 266-287 15-36 (107)
296 PRK10463 hydrogenase nickel in 95.3 0.021 4.6E-07 55.5 4.4 39 263-301 101-140 (290)
297 PLN03046 D-glycerate 3-kinase; 95.2 0.02 4.3E-07 58.4 4.2 39 264-302 210-250 (460)
298 PF02492 cobW: CobW/HypB/UreG, 95.2 0.024 5.2E-07 51.1 4.4 31 268-298 2-33 (178)
299 TIGR03689 pup_AAA proteasome A 95.2 0.049 1.1E-06 57.2 7.2 26 266-291 216-241 (512)
300 PRK07952 DNA replication prote 95.2 0.22 4.8E-06 47.4 11.1 41 267-307 100-142 (244)
301 COG1126 GlnQ ABC-type polar am 95.2 0.014 3.1E-07 54.1 2.9 36 265-300 27-63 (240)
302 PRK14723 flhF flagellar biosyn 95.2 0.088 1.9E-06 57.7 9.3 39 266-304 185-227 (767)
303 KOG0730 AAA+-type ATPase [Post 95.2 0.2 4.2E-06 53.4 11.4 42 265-307 467-508 (693)
304 PRK08760 replicative DNA helic 95.2 0.14 3.1E-06 53.5 10.5 37 265-301 228-267 (476)
305 TIGR01243 CDC48 AAA family ATP 95.2 0.086 1.9E-06 58.1 9.3 37 265-302 211-247 (733)
306 PRK09435 membrane ATPase/prote 95.2 0.018 3.8E-07 57.3 3.6 39 263-301 53-93 (332)
307 TIGR00073 hypB hydrogenase acc 95.2 0.023 5E-07 52.4 4.2 30 262-291 18-47 (207)
308 PF00910 RNA_helicase: RNA hel 95.1 0.012 2.6E-07 48.4 2.0 23 269-291 1-23 (107)
309 KOG0739 AAA+-type ATPase [Post 95.1 0.077 1.7E-06 51.6 7.6 38 266-304 166-203 (439)
310 PHA02244 ATPase-like protein 95.1 0.04 8.7E-07 55.4 6.0 78 268-361 121-199 (383)
311 PRK05703 flhF flagellar biosyn 95.1 0.16 3.5E-06 52.2 10.6 39 266-304 221-263 (424)
312 PRK04328 hypothetical protein; 95.1 0.1 2.2E-06 49.7 8.5 37 265-301 22-60 (249)
313 PRK14963 DNA polymerase III su 95.1 0.12 2.6E-06 54.4 9.8 28 264-291 34-61 (504)
314 PTZ00361 26 proteosome regulat 95.1 0.065 1.4E-06 55.3 7.7 35 265-300 216-250 (438)
315 PF08477 Miro: Miro-like prote 95.1 0.018 3.8E-07 47.5 2.9 23 269-291 2-24 (119)
316 cd03116 MobB Molybdenum is an 95.1 0.016 3.4E-07 51.5 2.7 26 267-292 2-27 (159)
317 PRK13341 recombination factor 95.1 0.14 3.1E-06 56.1 10.6 25 267-291 53-77 (725)
318 PRK12269 bifunctional cytidyla 95.1 0.02 4.4E-07 63.6 4.0 38 267-307 35-72 (863)
319 PF01695 IstB_IS21: IstB-like 95.1 0.043 9.4E-07 49.6 5.5 43 266-308 47-91 (178)
320 PRK12323 DNA polymerase III su 95.0 0.19 4.1E-06 54.1 11.0 29 263-291 35-63 (700)
321 PF13191 AAA_16: AAA ATPase do 95.0 0.019 4.1E-07 51.1 3.1 28 264-291 22-49 (185)
322 cd01129 PulE-GspE PulE/GspE Th 95.0 0.063 1.4E-06 51.7 6.9 27 266-292 80-106 (264)
323 cd03213 ABCG_EPDR ABCG transpo 95.0 0.38 8.2E-06 43.8 11.7 117 265-381 34-172 (194)
324 cd01918 HprK_C HprK/P, the bif 95.0 0.021 4.5E-07 50.2 3.2 32 266-301 14-45 (149)
325 PHA02575 1 deoxynucleoside mon 95.0 0.035 7.5E-07 52.0 4.8 39 268-308 2-40 (227)
326 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.18 3.9E-06 46.9 9.7 36 266-301 16-53 (224)
327 CHL00195 ycf46 Ycf46; Provisio 95.0 0.051 1.1E-06 56.9 6.6 36 265-301 258-293 (489)
328 cd03223 ABCD_peroxisomal_ALDP 95.0 0.44 9.5E-06 42.3 11.8 110 265-379 26-146 (166)
329 PRK08181 transposase; Validate 94.9 0.15 3.3E-06 49.2 9.2 42 267-308 107-150 (269)
330 PF03205 MobB: Molybdopterin g 94.9 0.016 3.4E-07 50.4 2.1 26 268-293 2-27 (140)
331 PF13479 AAA_24: AAA domain 94.9 0.057 1.2E-06 50.1 6.0 31 266-302 3-33 (213)
332 PF03266 NTPase_1: NTPase; In 94.9 0.017 3.7E-07 51.8 2.4 22 269-290 2-23 (168)
333 PRK12724 flagellar biosynthesi 94.9 0.025 5.5E-07 57.8 3.9 40 265-304 222-264 (432)
334 TIGR00176 mobB molybdopterin-g 94.9 0.017 3.6E-07 51.1 2.3 25 268-292 1-25 (155)
335 PRK11174 cysteine/glutathione 94.9 0.12 2.6E-06 55.3 9.2 36 265-300 375-410 (588)
336 TIGR00101 ureG urease accessor 94.9 0.035 7.6E-07 51.1 4.5 35 267-301 2-37 (199)
337 TIGR02238 recomb_DMC1 meiotic 94.9 0.12 2.6E-06 51.1 8.4 38 265-302 95-140 (313)
338 CHL00176 ftsH cell division pr 94.8 0.27 5.9E-06 53.2 11.8 37 266-303 216-252 (638)
339 cd03112 CobW_like The function 94.8 0.035 7.6E-07 49.1 4.2 25 268-292 2-26 (158)
340 PRK07003 DNA polymerase III su 94.8 0.23 5E-06 54.3 11.0 28 264-291 36-63 (830)
341 PRK05636 replicative DNA helic 94.8 0.13 2.8E-06 54.2 8.9 104 265-377 264-381 (505)
342 KOG1532 GTPase XAB1, interacts 94.8 0.026 5.6E-07 54.1 3.3 39 263-301 16-56 (366)
343 KOG0733 Nuclear AAA ATPase (VC 94.8 0.1 2.3E-06 55.1 8.0 40 266-306 545-584 (802)
344 PRK07764 DNA polymerase III su 94.7 0.18 4E-06 56.0 10.4 28 264-291 35-62 (824)
345 PRK14490 putative bifunctional 94.7 0.028 6.1E-07 56.7 3.8 29 265-293 4-32 (369)
346 PF13189 Cytidylate_kin2: Cyti 94.7 0.25 5.5E-06 44.5 9.6 35 268-305 1-35 (179)
347 COG0324 MiaA tRNA delta(2)-iso 94.7 0.028 6.2E-07 55.0 3.6 34 266-302 3-36 (308)
348 PRK06835 DNA replication prote 94.7 0.33 7.1E-06 48.3 11.2 41 267-307 184-226 (329)
349 PRK12723 flagellar biosynthesi 94.7 0.026 5.7E-07 57.3 3.5 40 264-303 172-217 (388)
350 PRK08533 flagellar accessory p 94.7 0.035 7.6E-07 52.3 4.1 36 266-301 24-61 (230)
351 cd01124 KaiC KaiC is a circadi 94.7 0.031 6.7E-07 50.0 3.6 34 268-301 1-36 (187)
352 cd04163 Era Era subfamily. Er 94.7 0.028 6E-07 48.2 3.2 24 266-289 3-26 (168)
353 TIGR00750 lao LAO/AO transport 94.7 0.028 6E-07 55.1 3.4 38 264-301 32-71 (300)
354 TIGR01243 CDC48 AAA family ATP 94.6 0.072 1.6E-06 58.7 7.0 39 266-305 487-525 (733)
355 PRK14949 DNA polymerase III su 94.6 0.22 4.7E-06 55.4 10.5 28 264-291 36-63 (944)
356 TIGR03600 phage_DnaB phage rep 94.6 0.28 6.1E-06 50.3 10.9 37 265-301 193-232 (421)
357 PF01078 Mg_chelatase: Magnesi 94.6 0.025 5.4E-07 52.3 2.9 26 267-292 23-48 (206)
358 PRK13764 ATPase; Provisional 94.6 0.14 3.1E-06 54.7 8.9 36 266-301 257-292 (602)
359 TIGR00665 DnaB replicative DNA 94.6 0.41 8.9E-06 49.3 12.1 37 265-301 194-233 (434)
360 PRK00411 cdc6 cell division co 94.6 0.2 4.4E-06 50.6 9.7 35 266-300 55-93 (394)
361 PRK12727 flagellar biosynthesi 94.6 0.21 4.5E-06 52.6 9.8 39 265-303 349-391 (559)
362 PRK14955 DNA polymerase III su 94.6 0.34 7.4E-06 49.4 11.2 28 264-291 36-63 (397)
363 COG1660 Predicted P-loop-conta 94.6 0.23 5E-06 47.3 9.1 97 267-389 2-102 (286)
364 PF00437 T2SE: Type II/IV secr 94.6 0.037 8E-07 53.1 4.0 113 266-390 127-244 (270)
365 PRK09518 bifunctional cytidyla 94.5 0.023 4.9E-07 62.4 2.7 34 268-304 3-36 (712)
366 PF01926 MMR_HSR1: 50S ribosom 94.5 0.029 6.3E-07 46.3 2.8 21 269-289 2-22 (116)
367 TIGR01650 PD_CobS cobaltochela 94.5 0.034 7.3E-07 55.0 3.7 34 267-301 65-98 (327)
368 PF03796 DnaB_C: DnaB-like hel 94.5 0.14 3E-06 48.9 7.8 103 266-377 19-136 (259)
369 TIGR02868 CydC thiol reductant 94.5 0.16 3.5E-06 53.6 9.0 36 265-300 360-396 (529)
370 PF10662 PduV-EutP: Ethanolami 94.5 0.027 5.8E-07 49.1 2.6 24 267-290 2-25 (143)
371 COG0467 RAD55 RecA-superfamily 94.5 0.054 1.2E-06 51.7 4.9 38 265-302 22-61 (260)
372 TIGR02397 dnaX_nterm DNA polym 94.5 0.35 7.7E-06 48.0 11.0 28 264-291 34-61 (355)
373 COG0283 Cmk Cytidylate kinase 94.5 0.047 1E-06 50.6 4.2 34 267-303 5-38 (222)
374 PRK09165 replicative DNA helic 94.4 0.35 7.6E-06 50.9 11.2 24 265-288 216-239 (497)
375 PRK14960 DNA polymerase III su 94.4 0.4 8.8E-06 51.7 11.7 28 264-291 35-62 (702)
376 KOG0744 AAA+-type ATPase [Post 94.4 0.18 3.8E-06 49.7 8.1 26 266-291 177-202 (423)
377 PF00005 ABC_tran: ABC transpo 94.4 0.028 6.1E-07 47.7 2.5 34 266-299 11-45 (137)
378 KOG1969 DNA replication checkp 94.4 0.039 8.6E-07 59.2 4.1 36 264-300 324-359 (877)
379 PRK14729 miaA tRNA delta(2)-is 94.4 0.045 9.8E-07 53.6 4.2 33 266-302 4-36 (300)
380 PRK06321 replicative DNA helic 94.4 0.33 7.2E-06 50.7 10.9 42 266-307 226-274 (472)
381 COG1132 MdlB ABC-type multidru 94.4 0.17 3.7E-06 53.9 8.9 103 265-369 354-480 (567)
382 PRK14957 DNA polymerase III su 94.4 0.35 7.5E-06 51.4 11.1 28 264-291 36-63 (546)
383 cd02034 CooC The accessory pro 94.4 0.037 8.1E-07 46.4 3.1 33 269-301 2-36 (116)
384 TIGR02639 ClpA ATP-dependent C 94.3 0.33 7.2E-06 53.5 11.3 22 269-290 206-227 (731)
385 cd03114 ArgK-like The function 94.3 0.038 8.3E-07 48.4 3.2 34 268-301 1-36 (148)
386 cd00154 Rab Rab family. Rab G 94.3 0.033 7.2E-07 47.3 2.7 22 269-290 3-24 (159)
387 PRK13768 GTPase; Provisional 94.2 0.04 8.6E-07 52.7 3.4 37 266-302 2-40 (253)
388 cd04137 RheB Rheb (Ras Homolog 94.2 0.033 7.3E-07 49.4 2.7 21 269-289 4-24 (180)
389 PRK08506 replicative DNA helic 94.2 0.51 1.1E-05 49.3 11.8 37 265-301 191-229 (472)
390 PRK05896 DNA polymerase III su 94.2 0.43 9.4E-06 51.1 11.3 28 264-291 36-63 (605)
391 PRK13833 conjugal transfer pro 94.2 0.049 1.1E-06 54.0 4.0 112 267-390 145-262 (323)
392 TIGR00390 hslU ATP-dependent p 94.2 0.038 8.3E-07 56.4 3.3 32 266-298 47-78 (441)
393 PRK08006 replicative DNA helic 94.2 0.21 4.5E-06 52.2 8.8 37 265-301 223-262 (471)
394 PF01443 Viral_helicase1: Vira 94.1 0.03 6.6E-07 52.0 2.4 22 269-290 1-22 (234)
395 PRK15455 PrkA family serine pr 94.1 0.032 6.9E-07 59.0 2.7 27 266-292 103-129 (644)
396 PRK00440 rfc replication facto 94.1 0.3 6.6E-06 47.5 9.5 24 268-291 40-63 (319)
397 PRK07004 replicative DNA helic 94.1 0.42 9E-06 49.8 10.9 37 265-301 212-251 (460)
398 PF03215 Rad17: Rad17 cell cyc 94.1 0.049 1.1E-06 57.4 4.1 27 265-291 44-70 (519)
399 cd03280 ABC_MutS2 MutS2 homolo 94.1 0.24 5.2E-06 45.3 8.2 21 267-287 29-49 (200)
400 PRK05201 hslU ATP-dependent pr 94.1 0.043 9.2E-07 56.1 3.4 33 266-299 50-82 (443)
401 TIGR00231 small_GTP small GTP- 94.1 0.038 8.3E-07 46.6 2.7 22 269-290 4-25 (161)
402 PRK11860 bifunctional 3-phosph 94.1 0.062 1.3E-06 58.5 4.9 39 266-307 442-480 (661)
403 COG3172 NadR Predicted ATPase/ 94.1 0.14 3.1E-06 45.4 6.1 43 265-307 7-49 (187)
404 PRK13894 conjugal transfer ATP 94.0 0.061 1.3E-06 53.3 4.3 114 266-391 148-267 (319)
405 PRK13900 type IV secretion sys 94.0 0.06 1.3E-06 53.6 4.2 127 266-398 160-290 (332)
406 cd04138 H_N_K_Ras_like H-Ras/N 94.0 0.043 9.4E-07 47.2 2.8 22 269-290 4-25 (162)
407 COG0466 Lon ATP-dependent Lon 94.0 0.052 1.1E-06 58.3 3.9 46 266-312 350-395 (782)
408 smart00173 RAS Ras subfamily o 93.9 0.043 9.2E-07 47.7 2.8 21 269-289 3-23 (164)
409 cd01394 radB RadB. The archaea 93.9 0.05 1.1E-06 50.3 3.4 37 265-301 18-56 (218)
410 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.065 1.4E-06 51.4 4.2 37 265-301 35-73 (259)
411 PRK10733 hflB ATP-dependent me 93.9 0.19 4.1E-06 54.6 8.2 38 267-305 186-223 (644)
412 PRK14952 DNA polymerase III su 93.9 0.84 1.8E-05 48.9 12.8 28 264-291 33-60 (584)
413 TIGR00635 ruvB Holliday juncti 93.9 0.05 1.1E-06 53.0 3.4 27 266-292 30-56 (305)
414 PF00931 NB-ARC: NB-ARC domain 93.9 0.05 1.1E-06 52.2 3.4 26 264-289 17-42 (287)
415 TIGR02237 recomb_radB DNA repa 93.9 0.053 1.2E-06 49.7 3.4 38 265-302 11-50 (209)
416 PRK12726 flagellar biosynthesi 93.9 0.054 1.2E-06 54.7 3.6 40 264-303 204-245 (407)
417 PRK05973 replicative DNA helic 93.9 0.048 1.1E-06 51.6 3.1 71 240-311 36-115 (237)
418 COG4608 AppF ABC-type oligopep 93.8 0.41 8.8E-06 46.0 9.3 122 264-390 37-179 (268)
419 TIGR02782 TrbB_P P-type conjug 93.8 0.06 1.3E-06 52.8 3.9 112 267-390 133-251 (299)
420 TIGR00678 holB DNA polymerase 93.8 0.67 1.4E-05 41.8 10.4 28 264-291 12-39 (188)
421 cd01123 Rad51_DMC1_radA Rad51_ 93.8 0.064 1.4E-06 50.1 3.9 38 265-302 18-63 (235)
422 PF13555 AAA_29: P-loop contai 93.8 0.063 1.4E-06 39.9 3.0 22 267-288 24-45 (62)
423 KOG0734 AAA+-type ATPase conta 93.8 0.19 4E-06 52.5 7.3 30 262-291 333-362 (752)
424 cd01983 Fer4_NifH The Fer4_Nif 93.8 0.038 8.2E-07 43.1 1.9 24 268-291 1-24 (99)
425 COG0396 sufC Cysteine desulfur 93.8 0.062 1.3E-06 50.4 3.5 25 265-289 29-53 (251)
426 cd00876 Ras Ras family. The R 93.7 0.047 1E-06 46.9 2.7 21 269-289 2-22 (160)
427 COG4175 ProV ABC-type proline/ 93.7 0.05 1.1E-06 53.3 3.0 28 264-291 52-79 (386)
428 cd04136 Rap_like Rap-like subf 93.7 0.049 1.1E-06 47.2 2.7 21 269-289 4-24 (163)
429 cd04139 RalA_RalB RalA/RalB su 93.7 0.049 1.1E-06 47.1 2.7 21 269-289 3-23 (164)
430 smart00175 RAB Rab subfamily o 93.7 0.05 1.1E-06 47.1 2.7 22 269-290 3-24 (164)
431 PRK05342 clpX ATP-dependent pr 93.7 0.058 1.3E-06 55.3 3.6 32 267-299 109-140 (412)
432 cd01862 Rab7 Rab7 subfamily. 93.7 0.046 1E-06 47.8 2.5 21 269-289 3-23 (172)
433 PRK04296 thymidine kinase; Pro 93.6 0.05 1.1E-06 49.6 2.7 33 267-299 3-37 (190)
434 cd04119 RJL RJL (RabJ-Like) su 93.6 0.051 1.1E-06 47.0 2.7 22 269-290 3-24 (168)
435 COG4618 ArpD ABC-type protease 93.6 0.3 6.5E-06 50.7 8.5 112 266-379 362-498 (580)
436 TIGR03707 PPK2_P_aer polyphosp 93.6 0.71 1.5E-05 43.5 10.4 108 265-392 30-158 (230)
437 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.056 1.2E-06 53.8 3.1 28 265-292 87-114 (358)
438 PRK14087 dnaA chromosomal repl 93.6 0.99 2.1E-05 46.9 12.5 40 268-307 143-186 (450)
439 PRK13851 type IV secretion sys 93.5 0.063 1.4E-06 53.7 3.5 27 266-292 162-188 (344)
440 cd04177 RSR1 RSR1 subgroup. R 93.5 0.055 1.2E-06 47.6 2.7 21 269-289 4-24 (168)
441 KOG0991 Replication factor C, 93.5 0.27 5.9E-06 46.3 7.3 26 267-292 49-74 (333)
442 cd00157 Rho Rho (Ras homology) 93.5 0.055 1.2E-06 47.2 2.7 22 269-290 3-24 (171)
443 COG4619 ABC-type uncharacteriz 93.5 0.2 4.4E-06 45.0 6.1 44 265-308 28-80 (223)
444 cd03234 ABCG_White The White s 93.5 0.091 2E-06 49.0 4.3 27 265-291 32-58 (226)
445 COG1084 Predicted GTPase [Gene 93.5 0.45 9.7E-06 46.9 9.1 98 265-369 167-278 (346)
446 COG0464 SpoVK ATPases of the A 93.5 0.14 3.1E-06 53.6 6.2 34 264-298 274-307 (494)
447 PRK14959 DNA polymerase III su 93.5 0.93 2E-05 48.8 12.3 28 264-291 36-63 (624)
448 cd03283 ABC_MutS-like MutS-lik 93.5 0.059 1.3E-06 49.6 3.0 23 266-288 25-47 (199)
449 TIGR03375 type_I_sec_LssB type 93.5 1.1 2.4E-05 48.9 13.4 34 266-299 491-525 (694)
450 COG1223 Predicted ATPase (AAA+ 93.5 0.3 6.4E-06 46.8 7.5 38 266-304 151-188 (368)
451 PRK00080 ruvB Holliday junctio 93.4 0.062 1.4E-06 53.2 3.2 27 266-292 51-77 (328)
452 COG4988 CydD ABC-type transpor 93.4 0.63 1.4E-05 49.1 10.6 44 265-308 346-398 (559)
453 PRK05748 replicative DNA helic 93.4 0.56 1.2E-05 48.6 10.4 43 265-307 202-251 (448)
454 cd03260 ABC_PstB_phosphate_tra 93.4 0.099 2.1E-06 48.6 4.4 26 265-290 25-50 (227)
455 cd04156 ARLTS1 ARLTS1 subfamil 93.4 0.055 1.2E-06 46.8 2.5 22 269-290 2-23 (160)
456 cd03269 ABC_putative_ATPase Th 93.4 0.066 1.4E-06 49.2 3.1 27 265-291 25-51 (210)
457 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.06 1.3E-06 49.7 2.9 35 265-299 29-64 (218)
458 PRK14950 DNA polymerase III su 93.4 0.44 9.4E-06 51.2 9.8 28 264-291 36-63 (585)
459 PRK06731 flhF flagellar biosyn 93.4 0.73 1.6E-05 44.5 10.4 38 265-302 74-113 (270)
460 PRK13541 cytochrome c biogenes 93.4 0.069 1.5E-06 48.6 3.2 35 265-299 25-60 (195)
461 COG2274 SunT ABC-type bacterio 93.4 0.18 3.9E-06 55.1 6.9 43 266-308 499-550 (709)
462 PRK08691 DNA polymerase III su 93.3 0.73 1.6E-05 50.1 11.3 29 263-291 35-63 (709)
463 PRK14493 putative bifunctional 93.3 0.066 1.4E-06 51.8 3.1 27 267-293 2-28 (274)
464 cd03225 ABC_cobalt_CbiO_domain 93.3 0.07 1.5E-06 49.0 3.2 35 265-299 26-61 (211)
465 PRK09361 radB DNA repair and r 93.3 0.075 1.6E-06 49.4 3.4 37 265-301 22-60 (225)
466 KOG0727 26S proteasome regulat 93.3 0.68 1.5E-05 44.2 9.6 43 265-308 188-230 (408)
467 TIGR00960 3a0501s02 Type II (G 93.3 0.063 1.4E-06 49.6 2.8 35 265-299 28-63 (216)
468 cd03224 ABC_TM1139_LivF_branch 93.3 0.067 1.4E-06 49.5 3.0 27 265-291 25-51 (222)
469 TIGR01166 cbiO cobalt transpor 93.3 0.07 1.5E-06 48.3 3.1 34 265-298 17-51 (190)
470 TIGR02525 plasmid_TraJ plasmid 93.2 0.093 2E-06 53.0 4.2 24 267-290 150-173 (372)
471 PRK05595 replicative DNA helic 93.2 0.39 8.4E-06 49.7 8.9 37 265-301 200-239 (444)
472 cd04155 Arl3 Arl3 subfamily. 93.2 0.064 1.4E-06 47.1 2.7 24 266-289 14-37 (173)
473 cd03259 ABC_Carb_Solutes_like 93.2 0.072 1.6E-06 49.1 3.1 27 265-291 25-51 (213)
474 cd03256 ABC_PhnC_transporter A 93.2 0.095 2.1E-06 49.1 4.0 34 265-298 26-60 (241)
475 PF07726 AAA_3: ATPase family 93.2 0.049 1.1E-06 46.6 1.8 24 269-292 2-25 (131)
476 cd01128 rho_factor Transcripti 93.2 0.51 1.1E-05 45.0 9.0 27 266-292 16-42 (249)
477 cd03263 ABC_subfamily_A The AB 93.2 0.067 1.5E-06 49.5 2.9 27 265-291 27-53 (220)
478 cd04124 RabL2 RabL2 subfamily. 93.2 0.068 1.5E-06 46.7 2.7 21 269-289 3-23 (161)
479 PRK15177 Vi polysaccharide exp 93.2 0.072 1.6E-06 49.4 3.1 27 265-291 12-38 (213)
480 PF00025 Arf: ADP-ribosylation 93.2 0.069 1.5E-06 47.8 2.8 24 266-289 14-37 (175)
481 TIGR02673 FtsE cell division A 93.2 0.067 1.5E-06 49.3 2.8 27 265-291 27-53 (214)
482 cd03258 ABC_MetN_methionine_tr 93.2 0.068 1.5E-06 50.0 2.9 27 265-291 30-56 (233)
483 cd03261 ABC_Org_Solvent_Resist 93.2 0.067 1.5E-06 50.1 2.9 27 265-291 25-51 (235)
484 PRK08939 primosomal protein Dn 93.2 0.52 1.1E-05 46.4 9.2 83 266-366 156-243 (306)
485 TIGR02315 ABC_phnC phosphonate 93.2 0.066 1.4E-06 50.3 2.8 34 265-298 27-61 (243)
486 PRK14958 DNA polymerase III su 93.2 0.82 1.8E-05 48.2 11.2 28 264-291 36-63 (509)
487 TIGR02858 spore_III_AA stage I 93.1 0.94 2E-05 43.8 10.7 27 266-292 111-137 (270)
488 cd03292 ABC_FtsE_transporter F 93.1 0.071 1.5E-06 49.1 2.9 27 265-291 26-52 (214)
489 cd04113 Rab4 Rab4 subfamily. 93.1 0.07 1.5E-06 46.3 2.7 22 269-290 3-24 (161)
490 TIGR00382 clpX endopeptidase C 93.1 0.07 1.5E-06 54.6 3.1 25 267-291 117-141 (413)
491 PF06068 TIP49: TIP49 C-termin 93.1 0.11 2.5E-06 52.0 4.4 37 265-301 49-86 (398)
492 cd03235 ABC_Metallic_Cations A 93.1 0.071 1.5E-06 49.1 2.8 35 265-299 24-59 (213)
493 cd01860 Rab5_related Rab5-rela 93.1 0.069 1.5E-06 46.3 2.6 21 269-289 4-24 (163)
494 cd03265 ABC_DrrA DrrA is the A 93.0 0.08 1.7E-06 49.1 3.1 27 265-291 25-51 (220)
495 COG1484 DnaC DNA replication p 93.0 0.45 9.8E-06 45.5 8.3 87 265-368 104-195 (254)
496 PF12775 AAA_7: P-loop contain 93.0 0.11 2.3E-06 50.3 4.1 32 266-297 33-64 (272)
497 TIGR02524 dot_icm_DotB Dot/Icm 93.0 0.074 1.6E-06 53.5 3.0 25 266-290 134-158 (358)
498 PRK10584 putative ABC transpor 93.0 0.08 1.7E-06 49.3 3.1 27 265-291 35-61 (228)
499 cd01898 Obg Obg subfamily. Th 93.0 0.071 1.5E-06 46.5 2.6 21 269-289 3-23 (170)
500 PRK11629 lolD lipoprotein tran 93.0 0.08 1.7E-06 49.6 3.1 27 265-291 34-60 (233)
No 1
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-38 Score=303.91 Aligned_cols=173 Identities=34% Similarity=0.576 Sum_probs=158.2
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceec-CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN-GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~-~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~ 121 (403)
.|+||++|+++.|.|++|||.|++.. .+.|.++|||.|+. .|||||||+|.+ .|.|||||||
T Consensus 88 ~w~mn~~Drg~alaI~~dGL~CqSre----~KeWhGcRaT~Gl~gkGK~YyEvtitd-------------~GLCRVGWsT 150 (725)
T KOG0349|consen 88 EWKMNKQDRGLALAIDEDGLACQSRE----KKEWHGCRATAGLYGKGKYYYEVTITD-------------KGLCRVGWST 150 (725)
T ss_pred ccccCccccCceeeEcCCccccchhH----HhhhhccccccccccCceEEEEEEecc-------------Cceeeechhh
Confidence 49999999999999999999998753 47899999999999 899999999985 5999999999
Q ss_pred CCCCCCCCCCCCcceeEecCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCcc
Q 015668 122 GDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGV 201 (403)
Q Consensus 122 ~~~~~~~lG~d~~Sygy~~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~ 201 (403)
.+. +.-+|.+..+|||+++|++++|.++.+||++|+..|||||+||+++ .+|.|+|||+.+|.||++++..
T Consensus 151 ~qa-sLdlGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~---~~v~fsKNG~~lg~AF~ip~~~----- 221 (725)
T KOG0349|consen 151 LQA-SLDLGTGLDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDS---RTVWFSKNGEQLGAAFSIPVKY----- 221 (725)
T ss_pred ccc-ccccCccccccccCccCccccccccccccCcccccceeeEEEeccC---ceEEEecCccccceeEEcChhh-----
Confidence 774 5679999999999999999999999999999999999999999999 8999999999999999987643
Q ss_pred ccchhhcccCCCceEeEEEEeCeEEEEEccCCC-CCCCcccceecccccc
Q 015668 202 VDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALD 250 (403)
Q Consensus 202 ~~~~~~g~~~~~~~fP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~ 250 (403)
....|||||.++|+++.+|||.++ +|+|-+||....+|.+
T Consensus 222 ---------kn~~lfPAvvlkNael~fNFG~~~FKfpPgngFva~s~Ap~ 262 (725)
T KOG0349|consen 222 ---------KNSNLFPAVVLKNAELSFNFGSQPFKFPPGNGFVAVSDAPN 262 (725)
T ss_pred ---------cccccchheeeccceEEEecCCCccccCCCCceEEeecCCc
Confidence 267899999999999999999875 7777899999987765
No 2
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=6.5e-31 Score=261.82 Aligned_cols=167 Identities=25% Similarity=0.310 Sum_probs=147.8
Q ss_pred CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (403)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s 120 (403)
...|.|++.|++.+|.|++|.|+++.- +++++|||+|||..|.|||||+|++- .+..++|+||+
T Consensus 290 ~~tv~l~~hdrA~ql~Is~drlt~tge------KGy~MvRAshgv~~G~WYFEI~vd~~----------pd~~a~RlGws 353 (544)
T KOG2626|consen 290 MDTVNLSWHDRAEQLKISEDRLTATGE------KGYRMVRASHGVLEGAWYFEIKVDEM----------PDDAAIRLGWS 353 (544)
T ss_pred hhhhhhhhhcccccccccccceeeecc------cceeeeeecccccccceeEEEEeecC----------CCccceeeecc
Confidence 347999999999999999999999873 89999999999999999999999864 15689999999
Q ss_pred cCCCC-CCCCCCCCcceeEe-cCCceeeCCCcccCCCCCCCCCEEEEEEecCC---------------------------
Q 015668 121 RGDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLES--------------------------- 171 (403)
Q Consensus 121 ~~~~~-~~~lG~d~~Sygy~-~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~--------------------------- 171 (403)
+.... +.+||+|++||+|+ ..|.++|.+....|-..|+.||||||+|+|+.
T Consensus 354 q~~g~LqApvGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe 433 (544)
T KOG2626|consen 354 QLYGNLQAPVGYDKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFE 433 (544)
T ss_pred ccccccccccccccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEE
Confidence 97764 68999999999996 58999999999999999999999999999986
Q ss_pred --------------CCCceEEEEeCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCC
Q 015668 172 --------------KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGL 236 (403)
Q Consensus 172 --------------~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~ 236 (403)
.|...|.|+|||+.+|+||+. .. ..+.|||+||+. +|.|.+|||+.|.+
T Consensus 434 ~~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~n---i~-------------~~G~YyPaIS~yks~tv~~nfGP~F~~ 497 (544)
T KOG2626|consen 434 DPDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYEN---IY-------------KAGAYYPAISIYKSCTVKFNFGPQFRY 497 (544)
T ss_pred ccchhhhhhhccccCCCceEEEeecccchhhhhhh---hh-------------ccccccceeeecccceEEEeccccccC
Confidence 256789999999999999982 10 136899999998 89999999999998
Q ss_pred CCc
Q 015668 237 IPV 239 (403)
Q Consensus 237 ~p~ 239 (403)
+|-
T Consensus 498 ~p~ 500 (544)
T KOG2626|consen 498 PPC 500 (544)
T ss_pred Ccc
Confidence 763
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.88 E-value=1e-21 Score=166.14 Aligned_cols=116 Identities=29% Similarity=0.469 Sum_probs=98.3
Q ss_pred CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----CCCCCCCCCcceeEecCC-ceeeCCCcccCCCCCCC-C
Q 015668 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----PVGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-G 160 (403)
Q Consensus 87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~----~~~~lG~d~~Sygy~~~G-~~~~~~~~~~yG~~f~~-g 160 (403)
+|+|||||+|.+. ..++|||++... ....+|++..||+|+..+ ..+++.....++.++.. |
T Consensus 1 sG~~YwEV~v~~~-------------~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (124)
T PF00622_consen 1 SGKHYWEVEVDSG-------------GSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPG 67 (124)
T ss_dssp SSEEEEEEEETGG-------------CTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTT
T ss_pred CcCEEEEEEEecC-------------cCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCC
Confidence 5999999999864 339999999876 245789999999999877 88899888999999998 9
Q ss_pred CEEEEEEecCCCCCceEEEEeCccccc-ccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCC
Q 015668 161 DTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ 234 (403)
Q Consensus 161 DVIGc~ldl~~~p~~~i~ftkNG~~lg-~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~ 234 (403)
|||||+||++. ++|+|++||+.++ .+|+. .. ...++||+|++. ++.+++|||++|
T Consensus 68 dvIG~~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 68 DVIGCGLDLDN---GELSFYKNGKFLGIYAFTD-ID---------------FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp SEEEEEEETTT---TEEEEEETTEEEEEEEEES-CT---------------TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred cEEEEEEeecc---cEEEEEECCccceeEEEEC-CC---------------CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 8999999999999 77761 11 146999999999 899999999975
No 4
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.87 E-value=1.6e-21 Score=164.94 Aligned_cols=114 Identities=33% Similarity=0.528 Sum_probs=97.3
Q ss_pred CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC---CCCCCCCCcceeEecCC-ceeeCCCcccCCCCCCC-CC
Q 015668 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP---VGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-GD 161 (403)
Q Consensus 87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~---~~~lG~d~~Sygy~~~G-~~~~~~~~~~yG~~f~~-gD 161 (403)
+|+|||||+|.+ .+.++|||++...+ ...+|++.+||+|+.++ .++++.....|+.++.. ||
T Consensus 1 sG~~YwEV~v~~-------------~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd 67 (122)
T smart00449 1 SGRHYFEVEIFD-------------GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGD 67 (122)
T ss_pred CCcEEEEEEEcC-------------CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCC
Confidence 599999999984 37899999997754 46899999999998765 88888777789999997 99
Q ss_pred EEEEEEecCCCCCceEEEEeCcccc-cccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccC
Q 015668 162 TIICAIDLESKPLATIGFAKNGKWL-GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV 232 (403)
Q Consensus 162 VIGc~ldl~~~p~~~i~ftkNG~~l-g~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~ 232 (403)
+|||+||++. ++|+|++||+.+ +.+|.. .. ...++||++++. ...+.+|||+
T Consensus 68 ~iGv~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 68 VIGCFLDLEA---GTISFYKNGKYLHGLAFFD-VK---------------FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEEEEECCC---CEEEEEECCCEeeeEEEec-cC---------------CCCcEeeEEEcCCCCEEEEEecC
Confidence 9999999999 899999999999 788851 11 146999999998 4589999996
No 5
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.83 E-value=3.1e-22 Score=207.65 Aligned_cols=353 Identities=32% Similarity=0.458 Sum_probs=271.9
Q ss_pred CCCCCCCCCCCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCC
Q 015668 32 SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111 (403)
Q Consensus 32 ~~~~~~~~~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~ 111 (403)
..-..+++ +..+..|..+|+.. ....+..+....+.++++..|.+.|+.+++..+...||-.+.+.-...+.......
T Consensus 27 ~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 104 (558)
T KOG2242|consen 27 AEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPD 104 (558)
T ss_pred cccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCCCCccccc
Confidence 33355667 88889999999999 88888877777777778888999999999999888888888766544444444445
Q ss_pred CCcEEEEEecCCCCCCCCCCCCcceeEecCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccccc
Q 015668 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ 191 (403)
Q Consensus 112 ~~~~rVG~s~~~~~~~~lG~d~~Sygy~~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~ 191 (403)
....+++|+.... ...++++..+|+|...+.+..+..+..|++.|...|+|||.+++.......+.|.|||+.++.+|.
T Consensus 105 ~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~ 183 (558)
T KOG2242|consen 105 PHDVRIGWSLDSI-RTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFL 183 (558)
T ss_pred cccccccccchhh-hhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhc
Confidence 6788999987542 457899999999999999999999999999999999999999987533367899999999999987
Q ss_pred ccCCCCCCccccchhhcccCCCceEeEEEEeCeEEEEEccCCC-CCCCcccceeccccccCCCcccCCCCC-CCCCceEE
Q 015668 192 FDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVM 269 (403)
Q Consensus 192 ~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~~~~~~~~p~~~-~~~~~~vi 269 (403)
++... .....+||++..+++.|..|||+.. .+.+..-...+..++...+++..|.++ ....|.++
T Consensus 184 l~~~~-------------~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~ 250 (558)
T KOG2242|consen 184 LSKED-------------LGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVF 250 (558)
T ss_pred chhhh-------------ccCcccCcccccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhh
Confidence 64321 1355799999999999999999985 343333333344455544566666655 66789999
Q ss_pred EEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCeEE
Q 015668 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS-RASRTPRNFI 348 (403)
Q Consensus 270 ll~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~-~al~~g~~vI 348 (403)
+|+|+||+||++|+-....+.+.+..-+.+.-.++..+...|.....++...+...++++..++..++. +++...+++|
T Consensus 251 ~~~g~~~~g~~~~~le~~~q~~~~~~~i~g~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~ 330 (558)
T KOG2242|consen 251 MMRGLPGAGKTSWALEPAAQNPEKGGNILGGNTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYI 330 (558)
T ss_pred hcccccccccchhhhhhhhhCccccCCccccccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhh
Confidence 999999999999999999988876544554445555544344322112222334566666666666665 7889999999
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCcEEEEEECChHHHHHHHHHhccccCccccc
Q 015668 349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIM 400 (403)
Q Consensus 349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~ 400 (403)
+|.+|++.+.+.+.+..+..+.++..+++++++.+..+...|....+++|++
T Consensus 331 ~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~~~ 382 (558)
T KOG2242|consen 331 LDQTNLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDVGE 382 (558)
T ss_pred hhccccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccCCc
Confidence 9999999998888888888887899999999999999999999888888874
No 6
>COG4639 Predicted kinase [General function prediction only]
Probab=99.78 E-value=8e-19 Score=151.63 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=96.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
..+++|+|+|||||||||+++..+. .+|+.|++|..++. .+.. ..+..|.. +-+.+..+++..+++|
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~-----~~lsld~~r~~lg~~~~~e---~sqk~~~~----~~~~l~~~l~qrl~~G 69 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQN-----YVLSLDDLRLLLGVSASKE---NSQKNDEL----VWDILYKQLEQRLRRG 69 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCc-----ceecHHHHHHHhhhchhhh---hccccHHH----HHHHHHHHHHHHHHcC
Confidence 4689999999999999999988764 46888999987743 2211 11122222 2223444556677999
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF 401 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~ 401 (403)
+..||||||+.++.|++.++++..|+ ...+++|++| ++|.+||+.|.++++.+|++.
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r 128 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPR 128 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHH
Confidence 99999999999999999999999988 6667899999 899999999999999888764
No 7
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.76 E-value=1.3e-17 Score=144.36 Aligned_cols=122 Identities=24% Similarity=0.322 Sum_probs=92.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
||+|||+|||||||||+.|.+.+. +.+|+.|.++..+...... ...+... ..+.+.+.+..++..+++.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~ 73 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRRLAGEDPP-SPSDYIE---AEERAYQILNAAIRKALRNGNSV 73 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHHHCCSSSG-CCCCCHH---HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHHHcccccc-cchhHHH---HHHHHHHHHHHHHHHHHHcCCCc
Confidence 799999999999999999999887 8899999999887532111 1111111 22333344555666777999999
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK 396 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~ 396 (403)
|||+||..+..|..+.+.++.++ ++.+|+|+++ +++.+|+.+|.+..++
T Consensus 74 vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~ 124 (143)
T PF13671_consen 74 VVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDK 124 (143)
T ss_dssp EEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTT
T ss_pred eeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccc
Confidence 99999999999998888888887 8889999998 8999999999987554
No 8
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.74 E-value=8.9e-17 Score=136.95 Aligned_cols=164 Identities=22% Similarity=0.279 Sum_probs=133.6
Q ss_pred CCCCCC-CcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668 36 GPRSQK-QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV 114 (403)
Q Consensus 36 ~~~~~~-~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~ 114 (403)
-++++. +.|.||......++.|-+.|+++++ .+++.|+.++...|-||||+|.+ .|.
T Consensus 20 ~~rl~e~P~V~LD~~hMG~dVvilk~g~RicG---------tGG~lAtaPlvQnKsYFevkiQ~-------------tG~ 77 (197)
T KOG4030|consen 20 YPRLNEVPTVRLDVGHMGKDVVILKEGERICG---------TGGALATAPLVQNKSYFEVKIQQ-------------TGT 77 (197)
T ss_pred chhhhcCCcEEeehhccCCcEEEEecCcEEec---------cCceeeeeeeecccceEEEEEee-------------cce
Confidence 344444 7899999999999999999999874 57899999999999999999985 489
Q ss_pred EEEEEecCCCC--CCCCCCCCcceeEecCCceeeCCCcc---cCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccc
Q 015668 115 CRVGTSRGDDP--VGKLGETEQSFGFGGTGKFSHGGNFL---NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189 (403)
Q Consensus 115 ~rVG~s~~~~~--~~~lG~d~~Sygy~~~G~~~~~~~~~---~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~a 189 (403)
+.||.++++.+ ..+.|-|.+||+.+++|...|+.... +-..--.+|||||+..|- -++.|+.||+.+-..
T Consensus 78 WgiGlat~q~~l~~~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-----VELnfY~NGKn~e~p 152 (197)
T KOG4030|consen 78 WGIGLATKQSPLDKVPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-----VELNFYVNGKNVEDP 152 (197)
T ss_pred eeeeeeeccCccccCCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeee-----EEEEEEEcCceeccc
Confidence 99999998875 45789999999999999999987643 111224799999999986 478999999999887
Q ss_pred ccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCCCCcccceec
Q 015668 190 KQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVEGYKSW 245 (403)
Q Consensus 190 f~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~~p~~g~~p~ 245 (403)
++. . .+++||.|.+. ++-+.+.| .+|..-||+||..+
T Consensus 153 ~~g---v---------------RG~vyPvvYVddsAILD~~f-~nF~h~PPpGFe~I 190 (197)
T KOG4030|consen 153 ITG---V---------------RGPVYPVVYVDDSAILDLKF-KNFTHAPPPGFEEI 190 (197)
T ss_pred ccc---c---------------ccceeeEEEeCCceEEEEEe-cccccCCCCChhhe
Confidence 761 1 56999999998 66677777 34555677888654
No 9
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.69 E-value=2.3e-16 Score=143.51 Aligned_cols=168 Identities=23% Similarity=0.358 Sum_probs=134.5
Q ss_pred CCCCCCCCcEEeCcCCCCCCeEEcCCC-ceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668 35 SGPRSQKQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (403)
Q Consensus 35 ~~~~~~~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (403)
++.......+.||+.|++.++.+-.++ ++.+-+. .++...++|+..+...|.++|||.+.+.+ .+-
T Consensus 18 ~~~~~~~~~~~w~~~drs~nv~vk~~~~~tfhrhp---vaqstd~~rGk~g~~~g~h~w~i~w~~r~----------~GT 84 (242)
T KOG3953|consen 18 PSALGVQAQHGWSPSDRSLNVFVKLPDGLTFHRHP---VAQSTDGIRGKRGYSRGRHAWEIAWPNRQ----------RGT 84 (242)
T ss_pred CcchhhHHhhccCcccccceeEEecCCcceEEecC---CccccccccceeeeccCceEEEEEecCCc----------cCC
Confidence 444445555999999999999998876 7765432 24558999999999999999999998743 234
Q ss_pred cEEEEEecCCCC------CCCCCCCCcceeEe-cCCceeeCCCc-ccC-----CCCCCCCCEEEEEEecCCCCCceEEEE
Q 015668 114 VCRVGTSRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF-LNF-----GEKFGVGDTIICAIDLESKPLATIGFA 180 (403)
Q Consensus 114 ~~rVG~s~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~-~~y-----G~~f~~gDVIGc~ldl~~~p~~~i~ft 180 (403)
+.-||.+|+.++ ...||++.+|||++ ++...+|++.. ..| .+.|.++|-|.|.||++. +++.|.
T Consensus 85 ~avVGIaTk~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~e---gtl~F~ 161 (242)
T KOG3953|consen 85 HAVVGIATKVAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIE---GTLSFA 161 (242)
T ss_pred cceEEEEcccCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeecc---ceEEEE
Confidence 677999998775 45899999999998 55688888732 122 467999999999999999 899999
Q ss_pred eCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCCCC
Q 015668 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQG 235 (403)
Q Consensus 181 kNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~~~ 235 (403)
++|++||+||. +| .+..+||+||.- ++++++.+=..+.
T Consensus 162 ~~~e~LGvAFR------gL-----------~~~~LYP~Vsav~g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 162 ADGEYLGVAFR------GL-----------KDKKLYPAVSAVWGHCEVTMKYLGTLD 201 (242)
T ss_pred ECCeEEeeeec------CC-----------CCCcceeeeeehhcceeEEEEEeCCcC
Confidence 99999999998 22 267999999985 8999998866544
No 10
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-17 Score=172.13 Aligned_cols=147 Identities=29% Similarity=0.462 Sum_probs=117.2
Q ss_pred eeeEEe--cceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC-CCCCCCCCCcceeEecC-CceeeCCCcc
Q 015668 76 WSGARA--NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-PVGKLGETEQSFGFGGT-GKFSHGGNFL 151 (403)
Q Consensus 76 ~~~~Ra--~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~-~~~~lG~d~~Sygy~~~-G~~~~~~~~~ 151 (403)
++-.|+ ++.|..|+||||..... .|.+||||+...| |+..+|.|...|+|++. ++.+|.+ ..
T Consensus 1092 ~r~fr~eksyavkagkwyfefe~vt-------------~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg-~~ 1157 (5019)
T KOG2243|consen 1092 FRFFRAEKSYAVKAGKWYFEFETVT-------------AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQG-NE 1157 (5019)
T ss_pred eEEEeeehhheeeccceEEEEEEee-------------ccceeecccCCCCCcchhhCCccceeeeccchhhhhhcc-cc
Confidence 333444 58889999999999874 5889999999887 57889999999999874 5666654 46
Q ss_pred cCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEc
Q 015668 152 NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQF 230 (403)
Q Consensus 152 ~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nF 230 (403)
.||.+|+.||||||.||++. .+|.||+||+.|-..- + ..|++++.|+ +..|.|.+++. ...-++||
T Consensus 1158 ~~grswq~gdvvgcmi~l~d---~sm~ftlngeili~~~----g-selaf~d~di-----~~gfipic~lg~aqigrmn~ 1224 (5019)
T KOG2243|consen 1158 HFGRSWQAGDVVGCMIDLDD---ASMIFTLNGEILIDDK----G-SELAFADFDI-----EDGFIPICCLGLAQIGRMNF 1224 (5019)
T ss_pred ccccccCCCCeEEEEEeccc---ceEEEEEcCeEEEcCC----C-Ceeeeccccc-----cCCceeeeehhhHhhccccc
Confidence 79999999999999999999 7999999999886531 1 2456666664 67899999998 66679999
Q ss_pred cCCC---C----CCCcccceeccccc
Q 015668 231 SVEQ---G----LIPVEGYKSWVSAL 249 (403)
Q Consensus 231 G~~~---~----~~p~~g~~p~~~~~ 249 (403)
|.+. + |-.++||.||+-++
T Consensus 1225 g~d~st~k~~ticglqeg~epfavn~ 1250 (5019)
T KOG2243|consen 1225 GKDASTFKFFTICGLQEGFEPFAVNM 1250 (5019)
T ss_pred CCcccceeeeeeecccccCccceecc
Confidence 9873 3 34679999997654
No 11
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.62 E-value=4.1e-15 Score=154.32 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=86.8
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
...+++|+|+|+|||||||||++++..+. +++||.|.+. .++.+.. .+..+|+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~lg----------------~~~~~~~--------~a~~~L~ 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTLG----------------STQNCLT--------ACERALD 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHHH----------------HHHHHHH--------HHHHHHh
Confidence 35689999999999999999999998865 8999999742 1222222 2345679
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+|++||||+||+.++.|+++++++++++ ++.+++|++| ++|++|+..|..
T Consensus 419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 9999999999999999999999999887 8889999998 899999999975
No 12
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.61 E-value=9.1e-15 Score=142.61 Aligned_cols=128 Identities=21% Similarity=0.319 Sum_probs=93.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+.+|+|+|+|||||||+|++|++.++ .+.+|+.|.+++.+...+......|....+.. +......++..++..|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL---VTKAQEAAALAALKSGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHHHHhcCCCcccccccChHHHHH---HHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999984 27899999999876422211111222211211 22233445556678899
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF 401 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~ 401 (403)
+||+|+|+.++..|..+.+.++.++ .+.++++.++ +++++|+.+|. ++.+|.+
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~---~~~~~~~ 131 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG---ERAVPED 131 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC---cCCCCHH
Confidence 9999999999999988777777766 6778899888 89999999993 4556654
No 13
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.57 E-value=1.5e-14 Score=137.80 Aligned_cols=116 Identities=25% Similarity=0.472 Sum_probs=88.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+|+|+|+|||||||+|+.|++.+.. ..+++++.|.+++.+.. +...++. .+......++..++.++.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~--------~~~~~e~---~~~~~~~~~i~~~l~~~~ 69 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEE---FIRDSTLYLIKTALKNKY 69 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH--------hhHHhHH---HHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999987642 24788899988876521 1111121 222233446667778899
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcccc
Q 015668 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM 394 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~ 394 (403)
.||+|++|.+...|..+++.++.++ ++.+|++++| ++|++|+.+|....
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~ 120 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKI 120 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCC
Confidence 9999999999999998888887776 8888999998 89999999986543
No 14
>COG0645 Predicted kinase [General function prediction only]
Probab=99.56 E-value=7.8e-14 Score=122.89 Aligned_cols=120 Identities=19% Similarity=0.125 Sum_probs=93.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-c--cCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R--KHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~--~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
++++|+|+||+||||+|+.+.+.++ .++|.+|.+|+.|...+.. + ...|++. ..+.+...+......++..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L~g~p~~~r~~~g~ys~~---~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRLFGVPEETRGPAGLYSPA---ATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHhcCCcccccCCCCCCcHH---HHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999998 7999999999998631111 1 1123332 2222223333444556799
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
|.+||+|+|+..+..|....+.+..-+ ++.++.++.| +.+..|...|..
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 999999999999999998888888777 8999999998 789999999975
No 15
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.55 E-value=1.7e-14 Score=130.30 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=89.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccE--EEeccHHHHHHhhcCCCcccCCChHHHHH-HHHHHHHHHHHHHHHHhcC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~D~ir~~l~~~g~~~~~~~~~~~~~-~~~~a~~~~~~ll~~al~~ 343 (403)
.+|++.|+|||||||+|+.|++.+..+.| ++++.|..+- ...+.+ .+.+.+ +.+...+....++..|++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~------i~~DEs-lpi~ke~yres~~ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG------ILWDES-LPILKEVYRESFLKSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh------eecccc-cchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 58999999999999999999998876543 5555554331 111111 122322 333222223336667766
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCccccc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIM 400 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~ 400 (403)
..-||+|+||.+.++|+.+...++.+. .++++++-+| +.|++||..|....+.+|.+
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~ 132 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLR 132 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHH
Confidence 789999999999999999888888776 8999999998 99999997776655555543
No 16
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.54 E-value=1.6e-14 Score=138.83 Aligned_cols=123 Identities=24% Similarity=0.306 Sum_probs=80.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
-||+|||+|||||||+|++|.+.+.. ..+++++.|.+.-. .. .|... ...+.++..+...+++++.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~~-----~y~~~--~~Ek~~R~~l~s~v~r~ls~~ 71 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---RN-----DYADS--KKEKEARGSLKSAVERALSKD 71 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---TS-----SS--G--GGHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---hh-----hhhch--hhhHHHHHHHHHHHHHhhccC
Confidence 48999999999999999999886543 24677887765511 11 12111 122233344566777788999
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc--cCcccc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE--MGKEQI 399 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~--~g~~Vp 399 (403)
..||+|++|.++++|..+++.++.++ .+++|++.+| +.|++||.+|... +..+++
T Consensus 72 ~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i 130 (270)
T PF08433_consen 72 TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETI 130 (270)
T ss_dssp SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHH
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHH
Confidence 99999999999999999999999888 8999999998 9999999999864 444443
No 17
>PRK06762 hypothetical protein; Provisional
Probab=99.52 E-value=5.2e-14 Score=125.47 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+.+|+|+|+|||||||+|++|++.++. .+++++.|.++..+. +...... ...++ .+..++..++..|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~--~~~~~~~-~~~~~--------~~~~~~~~~~~~g~ 69 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML--RVKDGPG-NLSID--------LIEQLVRYGLGHCE 69 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc--cccCCCC-CcCHH--------HHHHHHHHHHhCCC
Confidence 579999999999999999999998853 378899999998763 1110000 01111 12223334567899
Q ss_pred eEEEeCCCCCHHHHHHHHHHHh-cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 346 NFIIDQTNVFKSARKRKLRLFV-NFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~-~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+||+|+++.....|.. ++.+. .++ ++.+|++++| ++|++|+.+|..
T Consensus 70 ~vild~~~~~~~~~~~-~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 70 FVILEGILNSDRYGPM-LKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred EEEEchhhccHhHHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 9999999877766654 44444 444 7889999998 999999999975
No 18
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.50 E-value=5.6e-14 Score=129.37 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=90.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-ccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
..|.+++|.|.|||||||++..+...+....+++|+.|.+|..+...... .... ..........+..+...+++.++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADP-DEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999998732348999999988754210000 0000 001123344566677788889999
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcccc------Cccccccc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM------GKEQIMFC 402 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~------g~~Vp~~~ 402 (403)
++.++|+|.|+..++.-.++++.+++.+ ++.++++.+| ++.+.|+.+|..+. |+.||.+.
T Consensus 92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~ 159 (199)
T PF06414_consen 92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEK 159 (199)
T ss_dssp CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCC
T ss_pred cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHH
Confidence 9999999999988887777888898866 8888888887 89999999998877 88888764
No 19
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.42 E-value=3.1e-12 Score=119.22 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCCh---HHHHHHHH-HHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYS---ERFQCLMG-RANAIFDVLL 337 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~---~~~~~~~~-~a~~~~~~ll 337 (403)
....+|+||||||+|||++|++|++.+.= -...++|..+.|.++..... ....+. .......+ .|..++..++
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~-~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ-DAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc-ccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999987761 12466777778777653211 111111 22222333 3556788888
Q ss_pred HHHh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhccc
Q 015668 338 SRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKE 393 (403)
Q Consensus 338 ~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---pe~~~~R~~~R~~~ 393 (403)
..+. ..|+..|+|+||.+++.|+.+++.+.+.+ +.++++++ +++++++|.++...
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~ 147 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQ 147 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHT
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHc
Confidence 8777 78999999999999999998888888765 44444444 36888888877653
No 20
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.42 E-value=1.7e-12 Score=116.93 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=82.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-c-cCCChH----HHHHHHHHHHHHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R-KHNYSE----RFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~-~~~~~~----~~~~~~~~a~~~~~~ll~~a 340 (403)
.+|+|+|+|||||||+|+.|++.++. .+++++.|.++..+...... . ...+.. .-+...++....+...+..+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988753 37788999888765311000 0 000000 00122233334445556667
Q ss_pred hcCCCeEEEeCCCC-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
++.|.+||+|+++. ....|+ .++.+.. .++.+|++.+| +++.+|+.+|..
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~-~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQD-CWRSFVG-LDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHH-HHHHhcC-CCEEEEEEECCHHHHHHHHHhcCC
Confidence 89999999999988 455454 3444433 26888899887 899999999864
No 21
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.39 E-value=2.9e-12 Score=112.17 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=75.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh----cCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~----~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
+|+|+|+|||||||+|+.+.+.+. +.+++.|.++..+. ..|... . ....+........ ......+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~~~l~~~ 71 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPPANIAKMAAGIPL--N-DEDRWPWLQALTD---ALLAKLASA 71 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccHHHHHHHHcCCCC--C-ccchhhHHHHHHH---HHHHHHHhC
Confidence 589999999999999999999875 67889998876311 123211 1 1111112222211 111122257
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+.++|+|+++..+..|..+.+.+ ++ .+.+|+|.+| +++++|+..|.
T Consensus 72 ~~~vVid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 72 GEGVVVACSALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCEEEEeccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcc
Confidence 88999999999988887544333 34 7888999997 89999999995
No 22
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.34 E-value=1.4e-11 Score=108.34 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=77.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
+|+|+|+|||||||+|+.+...+.. ..+++++.|.+++.+.. .. .+.. ...+.++++ .......++.|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~--~~---~~~~~~~~~~~~~~----~~~a~~l~~~G 71 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK--DL---GFSREDREENIRRI----AEVAKLLADAG 71 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh--cc---CCCcchHHHHHHHH----HHHHHHHHhCC
Confidence 5899999999999999999988732 23677899999886631 11 1111 111122221 12333345789
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
.+||+|+++..+..|..+.+.+. ..++.++++.+| ++|++|+.+
T Consensus 72 ~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 72 LIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhCch
Confidence 99999999999998876544443 338889999998 899999876
No 23
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.34 E-value=6.7e-12 Score=110.68 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=75.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~ 342 (403)
+.+|+|+|+|||||||+|+.+.+.+.. ...++|+.|.+|..|. ..+ .|+. ...+.+.++. ++...+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~dl---~fs~~dR~e~~rr~~----~~A~ll~~ 72 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--ADL---GFSKEDREENIRRIA----EVAKLLAD 72 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--TT-----SSHHHHHHHHHHHH----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--CCC---CCCHHHHHHHHHHHH----HHHHHHHh
Confidence 579999999999999999999877643 2478899999887653 111 2221 1122222322 23444568
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
+|..||++...++++.|...-+.+.. .++..||+++| ++|++|+.+
T Consensus 73 ~G~ivIva~isp~~~~R~~~R~~~~~-~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 73 QGIIVIVAFISPYREDREWARELIPN-ERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp TTSEEEEE----SHHHHHHHHHHHHT-TEEEEEEEES-HHHHHHHTTT
T ss_pred CCCeEEEeeccCchHHHHHHHHhCCc-CceEEEEeCCCHHHHHHhCch
Confidence 99999999999999999864444443 37888999999 999999743
No 24
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.32 E-value=3.7e-11 Score=110.46 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=88.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCC---cccCCChHHH------------HHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGL---LRKHNYSERF------------QCLMGR 328 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~---~~~~~~~~~~------------~~~~~~ 328 (403)
.+.+|+++|+|||||||+|+.++..+.- ..++++|.+|+.+.. .+. .....| ..| ....++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~--~~~~~~D~~r~~~r~~~~~~p~l~~s~~-~a~~~~~~~~~~~~~~~y~~q 78 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI--DIVLSGDYLREFLRPYVDDEPVLAKSVY-DAWEFYGSMTDENIVKGYLDQ 78 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC--eEEehhHHHHHHHHHhcCCCCCcccccH-HHHHHcCCcchhHHHHHHHHH
Confidence 3679999999999999999999998763 467999999988752 111 001111 011 111222
Q ss_pred ---HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhccccCcccccc
Q 015668 329 ---ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEMGKEQIMF 401 (403)
Q Consensus 329 ---a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~~ 401 (403)
+...+..+++.++.+|.++|+|++++.+..+.. ....+ .+.++++++++++++|...|....++..|.+
T Consensus 79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~ 151 (197)
T PRK12339 79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK 151 (197)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHH
Confidence 223355677778899999999999999987642 22222 2334556667899999999998777777654
No 25
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.31 E-value=6.5e-13 Score=141.69 Aligned_cols=152 Identities=24% Similarity=0.339 Sum_probs=112.2
Q ss_pred cceeeEEec--ceecCC-----EEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----C-------CCCCCCCCcc
Q 015668 74 YCWSGARAN--VGINGG-----KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----P-------VGKLGETEQS 135 (403)
Q Consensus 74 ~~~~~~Ra~--~gv~~G-----~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~----~-------~~~lG~d~~S 135 (403)
...+++|.| .||..| +||||..|++..|. - .-+..|+||||+..+. | ...+|+|-+|
T Consensus 656 n~vss~rpniflgvaegsaqykkwy~el~id~~dpf---~--tae~thlrvgwass~gyap~pggge~wggngvgddl~s 730 (5019)
T KOG2243|consen 656 NDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPF---L--TAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFS 730 (5019)
T ss_pred hhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcc---e--ecccceeeeeeeccCCCCCCCCCcccccCCCccchhhh
Confidence 356778888 466665 89999999876442 1 1246799999987543 2 3589999999
Q ss_pred eeEecCCceeeC---CCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccchhhcccCC
Q 015668 136 FGFGGTGKFSHG---GNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCE 212 (403)
Q Consensus 136 ygy~~~G~~~~~---~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~ 212 (403)
|||++-.-+... ....+--.-....|||.|++|+-. ..|+|..||++..--|+... ..
T Consensus 731 ygfdglhlwsg~i~r~vas~nqhllrsddvisccldl~~---psisfringqpvqgmfenfn----------------~d 791 (5019)
T KOG2243|consen 731 YGFDGLHLWSGCIARAVASPNQHLLRSDDVISCCLDLGA---PSISFRINGQPVQGMFENFN----------------ID 791 (5019)
T ss_pred cCCCcchhhcccchhhhcChhhhhhcccchhhhhhhcCC---CceEEEECCccchhHHhcCC----------------Cc
Confidence 999763222111 111222335788999999999987 69999999999766676321 26
Q ss_pred CceEeEEEEe-CeEEEEEccCC---CCCCCcccceeccccc
Q 015668 213 SAVFPHILLK-NVVVVMQFSVE---QGLIPVEGYKSWVSAL 249 (403)
Q Consensus 213 ~~~fP~v~l~-~~~v~~nFG~~---~~~~p~~g~~p~~~~~ 249 (403)
+-|||.+++. +..|++-+|.+ ++|.||+||.|+..++
T Consensus 792 glffpv~sfsagikvrfllggrhgefkflpp~gyapcyea~ 832 (5019)
T KOG2243|consen 792 GLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAL 832 (5019)
T ss_pred ceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHHh
Confidence 7899999998 99999999986 5788999999997754
No 26
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.27 E-value=6.8e-11 Score=107.30 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=80.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a 340 (403)
..+.+|+|+|+|||||||+|+.+...+... ..++++.|.+++.|. +. ..|.. .....+..+ ..+...+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~--~~---~~~~~~~~~~~~~~~----~~~~~~~ 86 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN--KD---LGFSEEDRKENIRRI----GEVAKLF 86 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence 457899999999999999999999876422 267899999998763 21 11221 111122222 2233345
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
++.|.+||+|+++..+..|..+.+.+.. .++.+|++++| +++.+|+.
T Consensus 87 ~~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 87 VRNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred HcCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHhCc
Confidence 6899999999999999998764444443 36788999998 88999854
No 27
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.25 E-value=9.4e-11 Score=114.98 Aligned_cols=153 Identities=13% Similarity=0.176 Sum_probs=116.6
Q ss_pred EEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCC
Q 015668 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD 123 (403)
Q Consensus 44 v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~ 123 (403)
++|++--+...+.+|.+.+++++- ...++.|.+..++..|.+||||+|+... ....+.||++...
T Consensus 535 fqlt~spsqrdmilsnecatlsgs-----sleyrtilgsiafskgvhywevtidrhd----------gnsdivigvaqpa 599 (699)
T KOG4367|consen 535 FQLTPSPSQRDMILSNECATLSGS-----SLEYRTILGSIAFSKGVHYWEVTIDRHD----------GNSDIVIGVAQPA 599 (699)
T ss_pred eeccCCchhhceeeecccceeccc-----ccchheeeeecccccceeEEEEEEeccC----------CCCCceEEecchh
Confidence 345555566679999998877654 3679999999999999999999999752 2456889999854
Q ss_pred C-CCCCCCCCCcceeEecCCc--ee-eCCCcc-cCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccc-ccccccCCCC
Q 015668 124 D-PVGKLGETEQSFGFGGTGK--FS-HGGNFL-NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSN 197 (403)
Q Consensus 124 ~-~~~~lG~d~~Sygy~~~G~--~~-~~~~~~-~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg-~af~~~~~~~ 197 (403)
. .+..+|-|.+.|..--+|. ++ ||.... .---..+.|-|||+.||++. ++|.||.|.+..+ .||. +
T Consensus 600 vnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr---gtmeytvndrqddsmaft---n-- 671 (699)
T KOG4367|consen 600 VNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR---GTMEYTVNDRQDDSMAFT---N-- 671 (699)
T ss_pred hhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC---CceEEEeccccCCceeee---c--
Confidence 3 2568999999999755554 43 454332 22235789999999999999 8999999998664 4665 2
Q ss_pred CCccccchhhcccCCCceEeEEEEe-CeEEEEEccC
Q 015668 198 GLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV 232 (403)
Q Consensus 198 ~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~ 232 (403)
| .+-||||+++. |..+++.-|-
T Consensus 672 --------m-----rglyypafsvnanssitvhtgl 694 (699)
T KOG4367|consen 672 --------M-----RGLYYPAFSVNANSSITVHTGL 694 (699)
T ss_pred --------c-----cceeeeeeEeccCceEEEecCC
Confidence 2 56899999998 8899888774
No 28
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.1e-10 Score=103.51 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLS 338 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~ 338 (403)
..+.+.+|+|+||+||||||+|..+.+.+-.. ...+|+.|.+|.-|. ++..|+ ....+.+.+.... ..
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-----~dLgFs~edR~eniRRvaev----Ak 89 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-----RDLGFSREDRIENIRRVAEV----AK 89 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-----CCCCCChHHHHHHHHHHHHH----HH
Confidence 33557999999999999999999998877643 467899999998663 122232 2222233333222 22
Q ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R 390 (403)
...++|-.+|+-...++++.|+...+.+. -+++.-||+++| ++|.+|..|-
T Consensus 90 ll~daG~iviva~ISP~r~~R~~aR~~~~-~~~FiEVyV~~pl~vce~RDpKG 141 (197)
T COG0529 90 LLADAGLIVIVAFISPYREDRQMARELLG-EGEFIEVYVDTPLEVCERRDPKG 141 (197)
T ss_pred HHHHCCeEEEEEeeCccHHHHHHHHHHhC-cCceEEEEeCCCHHHHHhcCchH
Confidence 33588999999999999999986333333 347888999999 9999998654
No 29
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.23 E-value=4.4e-11 Score=106.19 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=71.4
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh----hcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM----KVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l----~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
|+|+|+|||||||+|+.+++.+. ..+++.|.+.... ...|.. ......+. ....+ ...+..++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~----~~~~~~~l~~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHPAANIEKMSAGIP--LNDDDRWP-WLQNL----NDASTAAAAKN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccChHHHHHHHcCCC--CChhhHHH-HHHHH----HHHHHHHHhcC
Confidence 57899999999999999999986 5778889863211 012321 01111111 12221 12233345667
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.++|||+|++.+..|.. + ..++ .+.+++|.+| +++++|+..|.
T Consensus 71 ~~~Vi~~t~~~~~~r~~-~---~~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 71 KVGIITCSALKRHYRDI-L---REAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred CCEEEEecccHHHHHHH-H---HhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 77899999987777653 3 3444 6778899887 89999999996
No 30
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.23 E-value=6.5e-11 Score=117.01 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=84.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHH-------------
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANA------------- 331 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~------------- 331 (403)
+++++|+|||||||+++.+.+.+. +....+++.|++..+....+.. ..+-...|....+.+.+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 468999999999999999986653 1235778888755211000000 00111122111111111
Q ss_pred -----------------------------------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEE
Q 015668 332 -----------------------------------IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVV 375 (403)
Q Consensus 332 -----------------------------------~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv 375 (403)
....++..++.++..+|+|++|..+++|..++++++.++ .+.+|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 112223334466678999999999999999888888887 89999
Q ss_pred EECCh-HHHHHHHHHhccccCcccc
Q 015668 376 VFPKP-EDLKIRSVKRFKEMGKEQI 399 (403)
Q Consensus 376 ~l~~p-e~~~~R~~~R~~~~g~~Vp 399 (403)
+|++| +++++||.+|...++.+|+
T Consensus 160 ~ld~ple~~l~RN~~R~~~v~devi 184 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRPVPLPDETI 184 (340)
T ss_pred EEeCCHHHHHHHHhcCCCCCCHHHH
Confidence 99998 8999999999765554443
No 31
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.19 E-value=2.5e-10 Score=103.12 Aligned_cols=117 Identities=25% Similarity=0.307 Sum_probs=75.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~ 342 (403)
+|+++|+|||||||+|+++++.++ +.+|+. |.+|+.+. .+. ..+...+.+.+. -.+....++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK-SGS----ENGELIESMIKNGKIVPSEVTVKLLKNAIQ 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh-cCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence 589999999999999999999986 788987 56677654 221 111111111110 00112233333332
Q ss_pred --CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.++.+|||....+...+..+.+.+.... .-.++++++| +++++|..+|..
T Consensus 73 ~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 73 ADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 2678999998888877776555554322 3347899997 789999999865
No 32
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.13 E-value=3e-10 Score=98.96 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=91.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+.+.+|.|+.||||||+.......+.. ..+++|+|.+-.++. . . + +. ...++ |.+.+...+..+++.++
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~--p---~-~--p~-~~~i~-A~r~ai~~i~~~I~~~~ 70 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQIS--P---D-N--PT-SAAIQ-AARVAIDRIARLIDLGR 70 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcC--C---C-C--ch-HHHHH-HHHHHHHHHHHHHHcCC
Confidence 578899999999999997776555543 589999999877642 1 1 1 11 11222 22333445566779999
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHhccccCccccccc
Q 015668 346 NFIIDQTNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFC 402 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~~~ 402 (403)
.++.+.|...++.++ +++.++..+ ...+++++.++..++|.+.|..++||+||++.
T Consensus 71 ~F~~ETtLS~~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~ 129 (187)
T COG4185 71 PFIAETTLSGPSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDK 129 (187)
T ss_pred CcceEEeeccchHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHH
Confidence 999999988888776 577776544 23346778889999999999999999999874
No 33
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.13 E-value=6.9e-10 Score=99.80 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=74.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
..++|+|+|+|||||||+|+.++..+... .+.+++.|.+++.+. .+.. .. ....+...+++. .+....+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~-~~~~--~~-~~~r~~~~~~~~----~~a~~~~~ 74 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS-KGLG--FS-KEDRDTNIRRIG----FVANLLTR 74 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh-cCCC--CC-hhhHHHHHHHHH----HHHHHHHh
Confidence 46899999999999999999998876422 367789999887764 2211 00 111122222221 12222346
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~ 387 (403)
.|.+||+|+++.++..|+.+.+ .. .++.+|++++| +++.+|+
T Consensus 75 ~g~~vi~~~~~~~~~~~~~l~~-~~--~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 75 HGVIVLVSAISPYRETREEVRA-NI--GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred CCCEEEEecCCCCHHHHHHHHh-hc--CCeEEEEEcCCHHHHHHhC
Confidence 7999999999888777764322 22 26788999998 8888986
No 34
>PRK14527 adenylate kinase; Provisional
Probab=99.07 E-value=1.6e-09 Score=98.93 Aligned_cols=121 Identities=25% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLS 338 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~ 338 (403)
+.+.+|+++|+|||||||+|+.+++.+. +.+++.|++. +.+. .+. ........++.. ....+..++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~l~~ 75 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVA-RGT----ELGQRAKPIMEAGDLVPDELILALIR 75 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHh-cCc----HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3578999999999999999999999886 6788886654 4332 111 011111111110 0112223333
Q ss_pred HHhcC--CCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhcc
Q 015668 339 RASRT--PRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 339 ~al~~--g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..+.+ +..+|||...-+..++..+-..+...+ .. .++++++| +++++|..+|..
T Consensus 76 ~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 76 DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 33332 457999986556666654444444444 33 56789997 899999999964
No 35
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.06 E-value=1.5e-09 Score=114.74 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC-c--cEEEeccHHHHHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~-~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~ 339 (403)
+...+|+|+|+|||||||+|+.++..+.. . ....++.|.+|+.|. |.. .|... .+....++. .+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--ge~---~f~~~er~~~~~~l~----~~a~~ 460 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--SEL---GFSKEDRDLNILRIG----FVASE 460 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc--CCC---CCCHHHHHHHHHHHH----HHHHH
Confidence 45789999999999999999999998863 2 258899999988763 321 23221 122222221 12233
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
.++.|..+|+|+++.++..|..+.+.+++.+.+.+|++++| +++.+|+.
T Consensus 461 v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 461 ITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence 45889999999999999999988888876556778899998 89999974
No 36
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.06 E-value=1.4e-09 Score=97.97 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=77.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc---cCCCh---HHHHHHHHHHHHHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR---KHNYS---ERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~---~~~~~---~~~~~~~~~a~~~~~~ll~~a 340 (403)
++|+|-|.|.|||||+|+.|.+.++. .|++++-|.+++.|.. +... ...+. +............+...+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~-p~~~l~~D~f~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~ 79 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE-PWLHLSVDTFVDMMPP-GRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM 79 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS--EEEEEHHHHHHHS-G-GGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC-CeEEEecChHHhhcCc-ccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999864 6999999999886541 1100 00001 101223333334455566666
Q ss_pred hcCCCeEEEeCCCCCHHH-HHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNVFKSA-RKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~-R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+.|.+||+|.....+.. +..+-+.+..+ ++.+|-|-+| +++.+|...|..
T Consensus 80 a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~-~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 80 ARAGNNVIVDDVFLGPRWLQDCLRRLLAGL-PVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp HHTT-EEEEEE--TTTHHHHHHHHHHHTTS--EEEEEEE--HHHHHHHHHHHTS
T ss_pred HhCCCCEEEecCccCcHHHHHHHHHHhCCC-ceEEEEEECCHHHHHHHHHhcCC
Confidence 799999999998777664 33322445543 8888888887 899999999974
No 37
>PRK14532 adenylate kinase; Provisional
Probab=99.05 E-value=2.2e-09 Score=97.61 Aligned_cols=114 Identities=24% Similarity=0.306 Sum_probs=72.8
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR 339 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~ 339 (403)
|+|+|+|||||||+|+++++.++ +.+|++|+ +|+++. .+.. .+.....+++ ...+++...+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~-~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA-SGSE----LGQRVKGIMDRGELVSDEIVIALIEERLPE 74 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH-cCCH----HHHHHHHHHHCCCccCHHHHHHHHHHHHhC
Confidence 78899999999999999999986 78999955 455442 2210 0111111111 111122222211
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~ 391 (403)
...+..+|+|...-+..+++.+.+.+...+ .. .+++|++| +++++|..+|.
T Consensus 75 -~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 75 -AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred -cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 235778999998888877776545555544 33 67889997 78999999885
No 38
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.03 E-value=4e-09 Score=94.91 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
+.+.+|+++|+|||||||+|+.+.+.+.. ..++.++.|.+++.+...| +... .. .+.+. ....+.....
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~------~~~~-~~-~~~~~-~~~~l~~~l~ 75 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYG------YDKQ-SR-IEMAL-KRAKLAKFLA 75 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCC------CCHH-HH-HHHHH-HHHHHHHHHH
Confidence 35789999999999999999999887742 2367888899888653222 1111 11 11111 1112222234
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
..|.+||+|.++..+..+....... .+..+||++++ +++++|+.+
T Consensus 76 ~~g~~VI~~~~~~~~~~~~~~~~~~---~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 76 DQGMIVIVTTISMFDEIYAYNRKHL---PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred hCCCEEEEEeCCcHHHHHHHHHhhc---CCeEEEEEeCCHHHHHHhchh
Confidence 6889999999987655444322111 14567899987 899999875
No 39
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.00 E-value=4e-09 Score=113.40 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~al 341 (403)
.+.+|+|+|+|||||||+|+.+++.+.. ..+++|+.|.+|..+. .+ ..|... ....++++. .+....+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~-~~----~~~~~~~r~~~~~~l~----~~a~~~~ 529 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN-RD----LGFSDADRVENIRRVA----EVARLMA 529 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC-CC----CCCCHHHHHHHHHHHH----HHHHHHH
Confidence 4899999999999999999999988632 2468899999998653 12 123321 222222221 2333345
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~ 387 (403)
+.|.+||+|+++..+..|..+.+.+.+ ..+.++|+++| +++++|+
T Consensus 530 ~~G~~Vivda~~~~~~~R~~~r~l~~~-~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 530 DAGLIVLVSFISPFREERELARALHGE-GEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred hCCCEEEEECCCCCHHHHHHHHHhccc-CCeEEEEECCCHHHHHhhC
Confidence 889999999999999988754433332 36788999998 8899986
No 40
>PRK14531 adenylate kinase; Provisional
Probab=98.99 E-value=2.2e-09 Score=97.51 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=73.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~ 342 (403)
-|+++|+|||||||+++.+++.+. +.+|+. |.+|+++. .+. ..+.....++.+ .......++...+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~-~~~----~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVA-AGS----ALGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHh-cCC----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999986 778888 66677653 111 111111111110 00111122221221
Q ss_pred --CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhcc
Q 015668 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..+|||...-+..+++.+-+.+...+ .+ .++++++| +++++|...|.+
T Consensus 76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 3567999999888877765444455444 33 46788887 799999998854
No 41
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.97 E-value=7.5e-10 Score=101.41 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=83.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCcc---EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR---YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~---~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
-+|++||+|.|||||.|+.|...+.++. .+.|..|+. + |..+..+|... ..++.++-.++..+++-+.+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des---l---g~~~ns~y~~s--~~EK~lRg~L~S~v~R~Lsk 73 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES---L---GIEKNSNYGDS--QAEKALRGKLRSAVDRSLSK 73 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh---c---CCCCccccccc--HHHHHHHHHHHHHHHhhccc
Confidence 4799999999999999999987665432 455555542 3 32222233321 12222333455566777899
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
+..||+|+-|..+-.|-.+....+... ..++|++.+| +.|.+.|.+|...
T Consensus 74 ~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p 125 (281)
T KOG3062|consen 74 GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP 125 (281)
T ss_pred CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC
Confidence 999999999999998887665555544 6788888888 8999999988764
No 42
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.93 E-value=2.2e-08 Score=102.06 Aligned_cols=127 Identities=12% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcC--CC-ccc---CCCh------------------
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP--GL-LRK---HNYS------------------ 319 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~--g~-~~~---~~~~------------------ 319 (403)
..+.+|+++|+||+||||.|.+++..+.- ..+|++|.+|+.|... .. .+. +.|.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~ 330 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTR 330 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccch
Confidence 35899999999999999999999999873 2478999998876421 10 000 0111
Q ss_pred -HHHHHHHHHHHHH---HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE--EEEEECChHHHHHHHHHhcc
Q 015668 320 -ERFQCLMGRANAI---FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI--AVVVFPKPEDLKIRSVKRFK 392 (403)
Q Consensus 320 -~~~~~~~~~a~~~---~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~--~vv~l~~pe~~~~R~~~R~~ 392 (403)
.-.....+++... ++.+++.++..|.++|||..|+.+..+.. ....+ .+ .++++++.++.++|...|.+
T Consensus 331 ~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 331 AEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 0011233455544 77889999999999999999999987652 22222 22 24677888999999999987
Q ss_pred ccCc
Q 015668 393 EMGK 396 (403)
Q Consensus 393 ~~g~ 396 (403)
..+.
T Consensus 407 ~~~~ 410 (475)
T PRK12337 407 ETGA 410 (475)
T ss_pred hccC
Confidence 5543
No 43
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.92 E-value=2.2e-08 Score=91.01 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=70.8
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-- 342 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~-- 342 (403)
|+++|+|||||||+|+.|++.+. +.+|+.|++..+....+. ............ -...+..++..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~ 74 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGT----ELGKKAKEYIDSGKLVPDEIVIKLLKERLKKP 74 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCC----hHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 78999999999999999999876 788888765443211110 011111111110 00122334433333
Q ss_pred -CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.++.+|+|...-+......+.+.+.... ...+|++++| +++++|..+|..
T Consensus 75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 3678999986666665554333333222 5567888887 799999999963
No 44
>PLN02200 adenylate kinase family protein
Probab=98.91 E-value=2.5e-08 Score=94.22 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLM--------GRANAI 332 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~ 332 (403)
....+.+|+++|+|||||||+|+++++.++ +.+|+. |.+|+++.. .. ..+......+ +.....
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~-~s----~~~~~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS-NS----EHGAMILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc-cC----hhHHHHHHHHHcCCCCcHHHHHHH
Confidence 345678999999999999999999999886 678888 555666531 10 0011101110 111111
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+...+. ...+..+|||....+...+.. +..+.+...-.+++++++ +++++|..+|.
T Consensus 111 l~~~l~--~~~~~~~ILDG~Prt~~q~~~-l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 111 IQKEME--SSDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHHHh--cCCCCeEEecCCcccHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 122221 123567999997666555543 333333334457788887 78999999885
No 45
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=1.9e-08 Score=92.44 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
..+.+|+|+|+|||||||+|+.+...+.. .+.+.++.|.++..+.. .. .+..... ...+.+ +..+...++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~-~~--~~~~~~~-~~~~~~----l~~~a~~~~ 93 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS-DL--GFSDADR-KENIRR----VGEVAKLMV 93 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh-cC--CcCcccH-HHHHHH----HHHHHHHHh
Confidence 45789999999999999999999987642 23688988888866431 11 1111111 111111 222333456
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~ 387 (403)
..|.+||.+..+..++.|..+++.+.+ ..+.+||+++| +++.+|.
T Consensus 94 ~~G~~VI~~~~~~~~~~R~~~r~~l~~-~~~i~V~L~~~~e~~~~R~ 139 (198)
T PRK03846 94 DAGLVVLTAFISPHRAERQMVRERLGE-GEFIEVFVDTPLAICEARD 139 (198)
T ss_pred hCCCEEEEEeCCCCHHHHHHHHHHccc-CCEEEEEEcCCHHHHHhcC
Confidence 789999988888889999876555544 35667999998 8888883
No 46
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.88 E-value=2.6e-08 Score=89.94 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=70.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDV 335 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ 335 (403)
++.+|+++|+|||||||+++.+++.+. +.+++.+++ |+.+. .+. ..........+ .+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVA-SGS----ERGKQLQAIMESGDLVPLDTVLDLLKD 73 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHh-cCC----HHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 467999999999999999999999875 678888654 45432 111 00011011110 11122222
Q ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..++..+..||+|...-+..... .+.. .. ...++++++| +.+.+|..+|..
T Consensus 74 ~~~~~~~~~~~~i~dg~~~~~~q~~----~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 74 AMVAALGTSKGFLIDGYPREVKQGE----EFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHcccCcCCeEEEeCCCCCHHHHH----HHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 2323356789999998654433222 2322 23 4567889997 789999998864
No 47
>PRK01184 hypothetical protein; Provisional
Probab=98.81 E-value=6.2e-08 Score=87.71 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCccc-CCChHHHHHHHHH-HHHHHHHHHHHHh--
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRK-HNYSERFQCLMGR-ANAIFDVLLSRAS-- 341 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~-~~~~~~~~~~~~~-a~~~~~~ll~~al-- 341 (403)
.+|+|+|+|||||||+++ +++++. +.++++ |.+|+.+...+.... ..+........+. ....+..++...+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 589999999999999987 667665 667776 566776532232110 0011110111111 0011111111112
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..+..||+|.. ......+. ++.... ....+|++.+| +++++|...|.+
T Consensus 78 ~~~~~vvidg~-r~~~e~~~-~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEY-FRKEFP-EDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHH-HHHhCC-cccEEEEEECCHHHHHHHHHHcCC
Confidence 34688999987 34443332 222211 25567888887 899999998864
No 48
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.80 E-value=3.8e-08 Score=91.27 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=67.2
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~- 342 (403)
|+++|+|||||||+|+.|++.+. +.+|+.++ +|+.+.. +. ..+......++. -......++...+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~~-~~----~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~ 73 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIKA-GT----PLGKKAKEYMEKGELVPDEIVNQLVKERLTQ 73 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhcc-cc----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 68899999999999999999886 78888855 4554421 10 001111111110 00112223322222
Q ss_pred ---CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.++.+|||...-+..+.+. +..+.......+++++.| +.+++|...|.
T Consensus 74 ~~~~~~~~ilDGfPrt~~Qa~~-l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 74 NQDNENGFILDGFPRTLSQAEA-LDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CcccCCcEEEeCCCCCHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 2678999996555554443 322222124467899998 78999999985
No 49
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.79 E-value=3.1e-08 Score=88.37 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=65.4
Q ss_pred EccCCCChhHHHHHHHHhCCCccEEEeccHHH------HHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 015668 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI------LEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i------r~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~al~~g 344 (403)
+|+|||||||+++.++..+. .+.|+.|.+ +.. ..|.. ++.. .............. .+...+
T Consensus 1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~~~~~~~~~--~~g~~----~~~~~~~~~~~~~~~~~~~---~~~~~~ 68 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM--ASGEP----LNDDDRKPWLQALNDAAFA---MQRTNK 68 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC---CeEEeCccCCchhhhccc--cCCCC----CChhhHHHHHHHHHHHHHH---HHHcCC
Confidence 59999999999999999986 578888863 221 12321 1111 11111121111111 123455
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..||+ .|++.+..|.. +++.+ ++.+|+|.+| +++++|+.+|..
T Consensus 69 ~~viv-~s~~~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 69 VSLIV-CSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG 113 (163)
T ss_pred ceEEE-EecchHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC
Confidence 56666 89987776653 44444 7999999998 899999999973
No 50
>PRK12338 hypothetical protein; Provisional
Probab=98.79 E-value=1.5e-07 Score=92.21 Aligned_cols=125 Identities=19% Similarity=0.205 Sum_probs=80.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc---c---cCCChHHHH---------------
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL---R---KHNYSERFQ--------------- 323 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~---~---~~~~~~~~~--------------- 323 (403)
.+.+|+++|.|||||||+|+.+++.++- ..++++|.+|+.+...... + .+.|. .|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~--~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~-a~~~l~~~~~~~~~~~~i 79 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNI--KHLIETDFIREVVRGIIGKEYAPALHKSSYN-AYTALRDKENFKNNEELI 79 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCC--eEEccChHHHHHHcCCCCcccCchhhcccHH-HHhhcCCcccccchHHHH
Confidence 4689999999999999999999999873 2345899999876421110 0 01111 111
Q ss_pred --HHHHHHH---HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhcccc
Q 015668 324 --CLMGRAN---AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEM 394 (403)
Q Consensus 324 --~~~~~a~---~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~~~~ 394 (403)
...+++. ..+..+++++++.|.++||+..++.+..... ..+.....+.++++-. .++.++|...|.+..
T Consensus 80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~ 154 (319)
T PRK12338 80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAMEI 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhhcc
Confidence 1122333 3345577888899999999999999975542 1121212454444434 489999999987543
No 51
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=3.3e-08 Score=85.88 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=86.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-----HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-----r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a 340 (403)
.-+|++.|..||||||.++.+.+++. +-.+..|++ +++|. .|.. .+...+|.++..... .+..+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~NveKM~-~Gip--LnD~DR~pWL~~i~~-----~~~~~ 80 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPANVEKMT-QGIP--LNDDDRWPWLKKIAV-----ELRKA 80 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHHHHHHHh-cCCC--CCcccccHHHHHHHH-----HHHHH
Confidence 56889999999999999999999997 667777753 67775 4542 234566776544332 22233
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcC-----C--cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNF-----R--KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF 401 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-----~--~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~ 401 (403)
+..|+-||+--..+.+.+|.-+...++.+ . .+.+|++... |++++|+.+|. ||..|.+
T Consensus 81 l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~ 146 (191)
T KOG3354|consen 81 LASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPAD 146 (191)
T ss_pred hhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHH
Confidence 45899999998888888887444334422 1 4567788887 99999999997 4655543
No 52
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.77 E-value=7.7e-08 Score=103.99 Aligned_cols=126 Identities=21% Similarity=0.160 Sum_probs=80.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHH-HHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCL-MGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~-~~~a~~~~~~ll~~al 341 (403)
...+++|+|+||+||||+|++|++.+.-. ...+++.+.+|+++...+.. ..... ..... .+.+..++..+....+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~d~~~~v~ 291 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGA-VSSPT-GAAEVEFRIAKAIAHDMTTFIC 291 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCC-cCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999987411 14566678888876422211 11001 11111 2223333444555556
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCc---EEEEEEC---ChHHHHHHHHHhcc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRK---IAVVVFP---KPEDLKIRSVKRFK 392 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~---~~vv~l~---~pe~~~~R~~~R~~ 392 (403)
..|..+|+|+||.+...|+.+++.+++.+. ..+++++ ++++.+++|..|..
T Consensus 292 ~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~ 348 (664)
T PTZ00322 292 KTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAK 348 (664)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 778899999999999988888888886541 2333333 35677788887754
No 53
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.76 E-value=8.3e-08 Score=89.32 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=68.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~ 342 (403)
-|+++|+|||||||+|+.+++.+. +.+|+.++ +++.+. .+. ..+.....++.. -......++...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~ 73 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVK-AGT----ELGKEAKSYMDAGELVPDEIVIGLVKERLA 73 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHh-ccc----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 378899999999999999999987 78888854 455543 111 011111111111 00112223322222
Q ss_pred ---CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668 343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+..+|||...-+..+...+-+.+...+ .. .++++++| +.+++|...|.
T Consensus 74 ~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 74 QPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred ccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 2347999996555554443333344444 33 67889998 78999999985
No 54
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.72 E-value=1.3e-07 Score=82.61 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=61.3
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
|+|+|+|||||||+|+.+++.+. +..++.|.++.++. +......+.. .++...+. ..+++..+...+ ++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~-~~ 71 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQRA--GMSIPEIFAEEGEEGFREL----EREVLLLLLTKE-NA 71 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHc--CCCHHHHHHHHCHHHHHHH----HHHHHHHHhccC-Cc
Confidence 78999999999999999999986 77888998877653 2110000000 00111111 112333333444 45
Q ss_pred EEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
||+... ..... .+.+.. ...+||+.+| +++++|..+|.
T Consensus 72 vi~~g~~~i~~~~~----~~~~~~--~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 72 VIATGGGAVLREEN----RRLLLE--NGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EEECCCCccCcHHH----HHHHHc--CCeEEEEeCCHHHHHHHhccCC
Confidence 555322 22222 122332 3457888888 78899998885
No 55
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.72 E-value=3.3e-08 Score=101.65 Aligned_cols=159 Identities=20% Similarity=0.181 Sum_probs=113.6
Q ss_pred cEEeCcCCCCC-CeEEcCCCceEEecCCCCcccceeeEEecceec--CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 015668 43 RVVLNPADCDL-DFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN--GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (403)
Q Consensus 43 ~v~l~~~d~~~-~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~--~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~ 119 (403)
...||+.+..- ..+++.|...+............+.+-++..+. .|.||||+.|.+.. ..+.+.||.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g----------~~~~i~i~~ 100 (469)
T KOG1477|consen 31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYG----------IEGRIKIGF 100 (469)
T ss_pred cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhh----------hhhceEEEE
Confidence 56888888744 445666665554332222223444455555554 57999999999653 457888998
Q ss_pred ecCCCC-CCCCCCCCcceeEec-CCceee-CC-CcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCC
Q 015668 120 SRGDDP-VGKLGETEQSFGFGG-TGKFSH-GG-NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAG 195 (403)
Q Consensus 120 s~~~~~-~~~lG~d~~Sygy~~-~G~~~~-~~-~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~ 195 (403)
...... ....|+...||+|++ +|.+.+ .. ....|+++|+.||.|||.++... .+|+|++||..+|.+++-
T Consensus 101 ~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~---q~i~~t~~g~~~~~~~~~--- 174 (469)
T KOG1477|consen 101 LIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEIT---QEIFFTKNGTEVGEIIKP--- 174 (469)
T ss_pred EecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhh---heeeeccCcccccccccc---
Confidence 876654 567899999999976 566666 22 34689999999999999999997 799999999999999762
Q ss_pred CCCCccccchhhcccCCCceEeE----EEE-e-CeEEEEEccC
Q 015668 196 SNGLGVVDSAVKERQCESAVFPH----ILL-K-NVVVVMQFSV 232 (403)
Q Consensus 196 ~~~l~~~~~~~~g~~~~~~~fP~----v~l-~-~~~v~~nFG~ 232 (403)
+ ...+||. +.+ . +..|.+|||.
T Consensus 175 ~---------------~~~~~~~~~n~~~~~s~~~~I~~~~g~ 202 (469)
T KOG1477|consen 175 L---------------SPDLLEENGNLAWLFSPNEEVEVNFGL 202 (469)
T ss_pred c---------------cccccccccceeeEeccCceeeeeecC
Confidence 1 2234444 444 3 8999999994
No 56
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.72 E-value=1.2e-07 Score=85.74 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=68.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH------HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI------LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i------r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~ 339 (403)
.++++++|++||||||+++.++..+. ...++.|.+ +... .|.... ....+. ....+......++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~r~~~--~g~~~~--~~~~~~-~~~~~~~~~~~~~-- 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNIDKMS--QGIPLT--DEDRLP-WLERLNDASYSLY-- 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHHHHHh--cCCCCC--cccchH-HHHHHHHHHHHHH--
Confidence 46899999999999999999998876 467777763 2221 232111 011111 1112211111221
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
......+|+ .|++.+..|.. +.+.. ++.+++|+++ +++++|+.+|.
T Consensus 73 -~~~~~g~iv-~s~~~~~~R~~----~r~~~~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 73 -KKNETGFIV-CSSLKKQYRDI----LRKSSPNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred -hcCCCEEEE-EEecCHHHHHH----HHhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence 112334555 88888777763 34444 7899999997 89999999996
No 57
>PRK14530 adenylate kinase; Provisional
Probab=98.69 E-value=1.6e-07 Score=87.41 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=67.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~ 342 (403)
.|+++|+|||||||+|+.|++.+. +.+|+++++. +............++.. ...+.. -......++..++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHHH-HHHHHcCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999999986 6777776654 43210000000011110 111110 01123344444455
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+...+|+|.-..+....+ .++.+. ..-.+++++.| +.+++|..+|.
T Consensus 81 ~~~~~IldG~pr~~~q~~-~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 81 DADGFVLDGYPRNLEQAE-YLESIT--DLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEcCCCCCHHHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence 567899997434443332 332221 23457889998 78999999885
No 58
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.65 E-value=4.2e-08 Score=82.30 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=29.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+|+++|+|||||||+|++|++.+. +.+++.|.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceE
Confidence 689999999999999999999875 6778888853
No 59
>PRK00625 shikimate kinase; Provisional
Probab=98.63 E-value=2.6e-07 Score=83.30 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=61.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHHHHHhcCCCe
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLLSRASRTPRN 346 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll~~al~~g~~ 346 (403)
.|+|+|+|||||||+++.+++.+. +.+++.|.+.++.. |..-......-++..-+.. .+.-..++..+ .....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~~--g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l-~~~~~ 75 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSNY--HGALYSSPKEIYQAYGEEGFCREEFLALTSL-PVIPS 75 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHHh--CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHh-ccCCe
Confidence 489999999999999999999986 67888898765421 2100000011111110011 01111223222 33334
Q ss_pred EEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 347 FIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 347 vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
||... +..... .++.+.. .-.+||+++| +++.+|+.+|..
T Consensus 76 VIs~GGg~~~~~e----~~~~l~~--~~~Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 76 IVALGGGTLMIEP----SYAHIRN--RGLLVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred EEECCCCccCCHH----HHHHHhc--CCEEEEEECCHHHHHHHHhcCCC
Confidence 44333 222222 2333432 3457899987 899999998853
No 60
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.61 E-value=8.5e-07 Score=86.21 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=82.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC-------CcccCCCh----------H-H--HH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-------LLRKHNYS----------E-R--FQ 323 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g-------~~~~~~~~----------~-~--~~ 323 (403)
..|.+|+++|++||||||+|.+++..++. ..++++|.+|+.|.... ..+ +.|. + . ..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~--~~vi~~D~~re~~R~~~~~e~~p~L~~-S~Y~a~~~l~~~~~~~~~~l~ 166 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI--RSVIGTDSIREVMRKIISKELLPTLHE-SSYTAWKSLRRPPPPEPPVIY 166 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHHHHHhcchhhccchhh-hhhhhhhcccCCCCCchhhhh
Confidence 35789999999999999999999999864 25799999997765211 100 0111 0 0 01
Q ss_pred HHHHH---HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHH-hcCC-cEEE-EEECChHHHHHHHHHhccc
Q 015668 324 CLMGR---ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLF-VNFR-KIAV-VVFPKPEDLKIRSVKRFKE 393 (403)
Q Consensus 324 ~~~~~---a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~-~~~~-~~~v-v~l~~pe~~~~R~~~R~~~ 393 (403)
....+ .....+.+++.++.+|.++|+...++.+.. ++.+ ..+. .+.+ +++.+.+..++|...|.+.
T Consensus 167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~----i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGF----IKEKYLENPNVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHH----HHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhh
Confidence 11122 223367788889999999999999999974 3333 2333 3333 4556668999998888753
No 61
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.60 E-value=3e-07 Score=81.79 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=34.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+.+|+|+|+|||||||+|+.+++.+. +..++.|.++++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~ 42 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEAR 42 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 457899999999999999999999986 6677889887664
No 62
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=2.8e-07 Score=79.69 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=77.0
Q ss_pred EccCCCChhHHHHHHHHhCCCccEEEeccHHH-----HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-----r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
.|..||||||.+..+++.+. +..|..|++ +++|. .|.+ .+...+|.++... .. .+....+.+.+
T Consensus 1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~-~GiP--L~DdDR~pWL~~l-~~----~~~~~~~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMS-AGIP--LNDDDRWPWLEAL-GD----AAASLAQKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHh-CCCC--CCcchhhHHHHHH-HH----HHHHhhcCCCc
Confidence 48999999999999999997 677777763 45554 4542 1233455554322 21 22233467778
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668 347 FIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF 401 (403)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~ 401 (403)
+||--..+.+++|.. ++... .+.+||++-+ +.+++|...|. ||.-|.+
T Consensus 70 ~vi~CSALKr~YRD~----LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~~ 119 (161)
T COG3265 70 VVIACSALKRSYRDL----LREANPGLRFVYLDGDFDLILERMKARK---GHFMPAS 119 (161)
T ss_pred eEEecHHHHHHHHHH----HhccCCCeEEEEecCCHHHHHHHHHhcc---cCCCCHH
Confidence 888888888888875 34433 6899999997 89999999987 5555543
No 63
>PRK13946 shikimate kinase; Provisional
Probab=98.58 E-value=6.6e-07 Score=81.31 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=69.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-~~~~~~a~~~~~~ll~~al~~g 344 (403)
...|+|+|+|||||||+++.+++.+. +-.+++|.+++++. |..-. ..-..+ +... .....+++..++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~--g~~~~-e~~~~~ge~~~---~~~e~~~l~~l~~~~ 80 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAA--RMTIA-EIFAAYGEPEF---RDLERRVIARLLKGG 80 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHh--CCCHH-HHHHHHCHHHH---HHHHHHHHHHHHhcC
Confidence 46799999999999999999999986 67889998776653 32100 000001 1111 111223444455566
Q ss_pred CeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..||... +.+.+..|+. +... -..|+++.| +++++|+.+|..
T Consensus 81 ~~Vi~~ggg~~~~~~~r~~----l~~~--~~~v~L~a~~e~~~~Rl~~r~~ 125 (184)
T PRK13946 81 PLVLATGGGAFMNEETRAA----IAEK--GISVWLKADLDVLWERVSRRDT 125 (184)
T ss_pred CeEEECCCCCcCCHHHHHH----HHcC--CEEEEEECCHHHHHHHhcCCCC
Confidence 5666553 5566665553 2222 245788887 889999998753
No 64
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.55 E-value=3.8e-07 Score=79.03 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=76.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~al 341 (403)
...+|+|+||+||||||+|-.|.+.+-.+ -..++..|.+|- |+.++..|. ....+.+.++.+ ......
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh-----GLN~DL~F~a~dR~ENIRRige----VaKLFA 100 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH-----GLNKDLGFKAEDRNENIRRIGE----VAKLFA 100 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc-----ccccccCcchhhhhhhHHHHHH----HHHHHh
Confidence 35789999999999999998888776543 346788888774 332222222 222333334333 222234
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
..+-.-|-.-...++..|.. .+.+-..+.+.-||+++| +.|.+|.-+
T Consensus 101 Dag~iciaSlISPYR~dRda-cRel~~~~~FiEvfmdvpl~vcE~RDPK 148 (207)
T KOG0635|consen 101 DAGVICIASLISPYRKDRDA-CRELLPEGDFIEVFMDVPLEVCEARDPK 148 (207)
T ss_pred ccceeeeehhcCchhccHHH-HHHhccCCCeEEEEecCcHHHhhccCch
Confidence 67777777778888888876 334433347888899999 899888654
No 65
>PRK07261 topology modulation protein; Provisional
Probab=98.55 E-value=1.1e-07 Score=85.46 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=58.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
-|+++|.|||||||+|+++++.+. ..+++.|.++-. .+ .. ....++... .+..++.++. +
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~---~~-~~----~~~~~~~~~--------~~~~~~~~~~-w 61 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ---PN-WQ----ERDDDDMIA--------DISNFLLKHD-W 61 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec---cc-cc----cCCHHHHHH--------HHHHHHhCCC-E
Confidence 378999999999999999998765 345555654311 11 00 001111111 2223345555 9
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
|+|.++....... .+ .. --.+++++.| ..|+.|..+|.
T Consensus 62 Iidg~~~~~~~~~-~l---~~--ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 62 IIDGNYSWCLYEE-RM---QE--ADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred EEcCcchhhhHHH-HH---HH--CCEEEEEcCCHHHHHHHHHHHH
Confidence 9999865422121 12 21 1246899998 89999999985
No 66
>PLN02674 adenylate kinase
Probab=98.54 E-value=1e-06 Score=83.54 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=69.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS 341 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al 341 (403)
.-|++.|+|||||||.|+.+++.+. +.+||++++ |+++. .+. ..+.....+++.- ......++..++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~-~~s----~~g~~i~~~~~~G~lvpd~iv~~lv~~~l 103 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVA-AKT----PLGIKAKEAMDKGELVSDDLVVGIIDEAM 103 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHh-ccC----hhhHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 4578899999999999999999987 788988765 55442 221 1122222222110 011222333333
Q ss_pred c---CCCeEEEeCCCCCHHHHHHHHH-HHhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668 342 R---TPRNFIIDQTNVFKSARKRKLR-LFVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 ~---~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~-~-~~vv~l~~p-e~~~~R~~~R~ 391 (403)
. .+..+|+|.---+.. +...+. .+...+ . -.+++++.| +++++|...|.
T Consensus 104 ~~~~~~~g~ilDGfPRt~~-Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 104 KKPSCQKGFILDGFPRTVV-QAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred hCcCcCCcEEEeCCCCCHH-HHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 2 346799998544444 333344 334333 3 357788998 78999999984
No 67
>PRK02496 adk adenylate kinase; Provisional
Probab=98.52 E-value=4.6e-07 Score=82.04 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=65.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh-
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS- 341 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al- 341 (403)
-|++.|+|||||||+|+.+++.++ +.+++.+++ ++.+. .+. ............ -......++...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~-~~~----~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~ 74 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIK-EQT----PLGIKAQGYMDKGELVPDQLVLDLVQERLQ 74 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHh-ccC----hhHHHHHHHHHCCCccCHHHHHHHHHHHHh
Confidence 378899999999999999999876 677887655 44432 111 000000001000 0011112222211
Q ss_pred --cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668 342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.....+|||..--+..+...+-+.+...+ ...+++++.| +.+++|...|.+
T Consensus 75 ~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 130 (184)
T PRK02496 75 QPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR 130 (184)
T ss_pred CcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 23457999985444443332222333333 4567888887 789999998854
No 68
>PRK06217 hypothetical protein; Validated
Probab=98.51 E-value=1.5e-07 Score=85.31 Aligned_cols=104 Identities=15% Similarity=0.011 Sum_probs=62.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
.-|+++|.|||||||+|++|++.+. +-+++.|.+..+- .+.. .......+.. . .++...+..+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~--~~~~--~~~~~~~~~~---~-----~~~~~~~~~~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLP--TDPP--FTTKRPPEER---L-----RLLLEDLRPREG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeecc--CCCC--ccccCCHHHH---H-----HHHHHHHhcCCC
Confidence 3589999999999999999999986 5678888765321 1100 0000011111 1 122222345678
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+|||.. +.. .+. .+... .-.+|+++.| +++++|..+|..
T Consensus 67 ~vi~G~-~~~-~~~----~~~~~-~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 67 WVLSGS-ALG-WGD----PLEPL-FDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred EEEEcc-HHH-HHH----HHHhh-CCEEEEEECCHHHHHHHHHcCcc
Confidence 999954 322 222 12221 2246789998 899999999974
No 69
>PRK13948 shikimate kinase; Provisional
Probab=98.50 E-value=5.2e-07 Score=82.01 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=65.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.+..|+|+|+|||||||+++.+++.+. +..+++|.+++++. |..-..-+...-+....+. -.+++..++..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~---E~~~l~~l~~~~ 80 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRC---EAEVVRRLTRLD 80 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHH---HHHHHHHHHhcC
Confidence 468899999999999999999999986 66788998877753 3210000000001112111 112333333444
Q ss_pred CeEEEe---CCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668 345 RNFIID---QTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 345 ~~vIlD---~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R 390 (403)
..||. .+...+..|+. +++. -.+||+..+ +.+.+|+..+
T Consensus 81 -~~VIa~GgG~v~~~~n~~~----l~~~--g~vV~L~~~~e~l~~Rl~~~ 123 (182)
T PRK13948 81 -YAVISLGGGTFMHEENRRK----LLSR--GPVVVLWASPETIYERTRPG 123 (182)
T ss_pred -CeEEECCCcEEcCHHHHHH----HHcC--CeEEEEECCHHHHHHHhcCC
Confidence 44554 45566665553 3332 346688886 8899998543
No 70
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.49 E-value=1.4e-06 Score=78.88 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=64.1
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH--------HHHHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVLLSR 339 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~~~~ll~~ 339 (403)
|++.|+|||||||+|++|++.++ ..+|+++.+. .... .+. .........+++ ...+....+..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~-~~t----~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIA-ERT----ELGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhc-cCC----hHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 78899999999999999999987 8999987754 3321 110 111111111111 11222233333
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHH-HhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRL-FVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~-~~~~~-~-~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+-... .||+|.---+.. +.+.++. +.+++ + -.++.++.+ +.++.|...|.
T Consensus 75 ~d~~~-~~I~dg~PR~~~-qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 75 ADCKA-GFILDGFPRTLC-QARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred hcccC-eEEEeCCCCcHH-HHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 31122 799998433333 3333333 34443 3 345677777 78889888884
No 71
>PRK03839 putative kinase; Provisional
Probab=98.49 E-value=4.5e-07 Score=81.82 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=59.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
.|+++|+|||||||+++.+++.+. +.+++.|.+..+... +.. +....+...+.+ ...+... ..+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~~-~~~----~~~~~~~~~~~l----~~~~~~~-~~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKGI-GEE----KDDEMEIDFDKL----AYFIEEE-FKEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcCC-ccc----CChhhhcCHHHH----HHHHHHh-ccCCCE
Confidence 588999999999999999999986 677888876554321 111 111111111111 1111111 235679
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
|+|..+. . +. ..-.+++++++ +++.+|..+|.
T Consensus 69 IidG~~~------~----l~--~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 69 VLDGHLS------H----LL--PVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEeccc------c----cc--CCCEEEEEECCHHHHHHHHHHcC
Confidence 9997421 1 11 22235788886 89999998875
No 72
>PRK13947 shikimate kinase; Provisional
Probab=98.48 E-value=7.1e-07 Score=79.59 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=60.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
-|+++|+|||||||+|+.+++.+. +..++.|.+++++. |.....-+...-+...... ..++++.+...+ ++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~~--g~~~~~~~~~~ge~~~~~~---e~~~~~~l~~~~-~~ 73 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKMT--GMTVAEIFEKDGEVRFRSE---EKLLVKKLARLK-NL 73 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhhc--CCcHHHHHHHhChHHHHHH---HHHHHHHHhhcC-Ce
Confidence 388999999999999999999987 67788898776652 3210000000001111111 112333333333 44
Q ss_pred EEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
|+.... +... .++.+.+.+ .+||+..+ +.+.+|...|.
T Consensus 74 vi~~g~g~vl~~~----~~~~l~~~~--~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 74 VIATGGGVVLNPE----NVVQLRKNG--VVICLKARPEVILRRVGKKK 115 (171)
T ss_pred EEECCCCCcCCHH----HHHHHHhCC--EEEEEECCHHHHHHHhcCCC
Confidence 443221 2222 233444432 36788887 78999998764
No 73
>PRK14529 adenylate kinase; Provisional
Probab=98.46 E-value=1.2e-06 Score=82.00 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=67.6
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccH-HHHHHhhcCCCcccCCChHHHHHHHHHHH----HHHHHHHHHHhc-
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-LILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRASR- 342 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D-~ir~~l~~~g~~~~~~~~~~~~~~~~~a~----~~~~~ll~~al~- 342 (403)
|+|+|+|||||||+++.|++.+. +.++|+. .+|+++. .+. ........+++.-. +....++...+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~-~~t----~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIG-GGT----ELGKKAKEYIDRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhcc-CCC----hHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Confidence 78899999999999999999986 5667654 4455432 111 11111222221110 112223322222
Q ss_pred -CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+.+|||.---+..+-+.+...+...+ .-.+++++.| +++++|...|.
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 2567999985555544333333444443 3457899998 78999999984
No 74
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.3e-06 Score=76.45 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=64.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHH-HHHHHHHHHHHHHHHhcCCCe
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCL-MGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~-~~~a~~~~~~ll~~al~~g~~ 346 (403)
=|+|||+|||||||+.+.|++.+. +-.+++|.+.++-. |. +-..-++.. .+.-++.-.+++..++..+ +
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~~--g~----sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~ 73 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKRT--GM----SIAEIFEEEGEEGFRRLETEVLKELLEED-N 73 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHHH--Cc----CHHHHHHHHhHHHHHHHHHHHHHHHhhcC-C
Confidence 478999999999999999999997 67788998877632 31 101111111 0011111123444444555 4
Q ss_pred EEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 347 FIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 347 vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
.||.. +-.+++.|+. +++. -.+||++.| +.+++|..
T Consensus 74 ~ViaTGGG~v~~~enr~~----l~~~--g~vv~L~~~~e~l~~Rl~ 113 (172)
T COG0703 74 AVIATGGGAVLSEENRNL----LKKR--GIVVYLDAPFETLYERLQ 113 (172)
T ss_pred eEEECCCccccCHHHHHH----HHhC--CeEEEEeCCHHHHHHHhc
Confidence 55554 4445555542 4433 367899998 89999998
No 75
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.45 E-value=1.5e-06 Score=81.92 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=65.5
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR 339 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~ 339 (403)
|+++|+|||||||+|+.+++.+. +.+|++|++. +++...+. .+.....+++ ...+++...+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~-----lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTT-----IGKEIQKVVTSGNLVPDNLVIAIVKDEIAK 80 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCCh-----HHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 88899999999999999999986 7888888764 44321111 0111111111 011112222222
Q ss_pred H-hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 340 A-SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
. ....+.+|||.---+..++. .+..+ .....+++++.| +.+++|...|.
T Consensus 81 ~~~~~~~g~iLDGfPRt~~Qa~-~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 81 VTDDCFKGFILDGFPRNLKQCK-ELGKI--TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred hccccCceEEEecCCCCHHHHH-HHHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 1 23457899998444444333 23222 124567788998 78999999884
No 76
>PRK14528 adenylate kinase; Provisional
Probab=98.43 E-value=3.5e-06 Score=76.75 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=65.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL 337 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll 337 (403)
..|++.|+|||||||+|+.+++.+. +.+++.+++ |+.+. .+. ..+......++ .+...+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~-~~~----~~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVK-NQT----AMGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhh-cCC----HHHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 4588999999999999999998876 567777765 55442 121 00110011110 0111111222
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhccc
Q 015668 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
... .....+|||.---+.++-..+.+.+...+ .-.++++++| +++.+|...|...
T Consensus 74 ~~~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 74 REA-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred hCc-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 111 22456999973233332222223333333 3457789998 8999999998643
No 77
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.43 E-value=4.9e-06 Score=75.36 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=64.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCcc--EEEecc-------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT-------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDVL 336 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~-------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~~l 336 (403)
+|++.|++||||||+++.|++.+...+ ++.+.. +.+++-+. .... .........+.-.+. ..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~r~~~~~~~ 78 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL-DPED--EKMDPRAELLLFAADRAQHVEEV 78 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh-ccCc--cCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998874322 222311 23343322 1100 001111111111111 112233
Q ss_pred HHHHhcCCCeEEEeCCCCCHHH----H----HHHHHH---Hh-cC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 337 LSRASRTPRNFIIDQTNVFKSA----R----KRKLRL---FV-NF-RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~----R----~~~~~~---~~-~~-~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+..++..+..||+|-...+.-. . ..++.. +. .. .+..+++++++ +++++|..+|..
T Consensus 79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 148 (200)
T cd01672 79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGR 148 (200)
T ss_pred HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 4445678999999932211110 0 112222 22 21 24567888887 899999999875
No 78
>PRK08118 topology modulation protein; Reviewed
Probab=98.42 E-value=1.4e-06 Score=78.15 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
-|+++|+|||||||+|+++++.+. ..+++.|.+... .|- .. ..+ ++ .. +++..++. +..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~---~~w--~~--~~~-~~----~~----~~~~~~~~-~~~w 62 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWK---PNW--EG--VPK-EE----QI----TVQNELVK-EDEW 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcc---cCC--cC--CCH-HH----HH----HHHHHHhc-CCCE
Confidence 488999999999999999999886 455666865432 110 00 011 11 11 12222223 4579
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
|+|.... .....+ +.. .-.+++++.| +.|..|..+|..
T Consensus 63 VidG~~~-~~~~~~----l~~--~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 63 IIDGNYG-GTMDIR----LNA--ADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEeCCcc-hHHHHH----HHh--CCEEEEEeCCHHHHHHHHHHHHH
Confidence 9998533 221111 111 2356899998 889999999853
No 79
>PRK06547 hypothetical protein; Provisional
Probab=98.42 E-value=7.8e-07 Score=80.12 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHH---------
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD--------- 334 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~--------- 334 (403)
..+.+|+++|++||||||+|+.+++.++ ..+++.|.+.... .+. ....+.+.+......+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~--~~~------~~~~~~l~~~~l~~g~~~~~~yd~~ 81 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGW--HGL------AAASEHVAEAVLDEGRPGRWRWDWA 81 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceeccc--ccC------ChHHHHHHHHHHhCCCCceecCCCC
Confidence 4578999999999999999999999875 5677777644211 010 0000111111100000
Q ss_pred -H-HHH-HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 335 -V-LLS-RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 335 -~-ll~-~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
. ... ..+..+.++|++........ ..+.+.+.+.+.+|++++| +++++|..+|.
T Consensus 82 ~~~~~~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 82 NNRPGDWVSVEPGRRLIIEGVGSLTAA---NVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCCCcEEeCCCCeEEEEehhhccHH---HHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 0 000 01224567889997665332 2222333336678999998 89999999996
No 80
>PRK13949 shikimate kinase; Provisional
Probab=98.42 E-value=2.6e-06 Score=76.49 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=31.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
-|+++|+|||||||+++.+++.+. +..+++|.+.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHH
Confidence 488999999999999999999986 678888977654
No 81
>PRK04040 adenylate kinase; Provisional
Probab=98.42 E-value=1.4e-06 Score=79.68 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
+.+|+++|.|||||||+++.+++.++. .+.+++.++++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~-~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc-CCeEEecchHHHH
Confidence 578999999999999999999999851 1566777766433
No 82
>PRK13808 adenylate kinase; Provisional
Probab=98.39 E-value=3.7e-06 Score=83.05 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=64.2
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR 339 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~ 339 (403)
|+|.|+|||||||+++.|++.+. +.+|+.+++ |+++. .+. ..+.....++. ....++...+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~-~~s----~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~ 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVA-AGT----PVGLKAKDIMASGGLVPDEVVVGIISDRIEQ 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhh-cCC----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 67899999999999999999986 788887665 44432 121 00111111110 111111122211
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
......+|||.---+.+ +...+. .+...+ .-.+|+|+.| +++++|...|.
T Consensus 75 -~~~~~G~ILDGFPRt~~-QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~ 128 (333)
T PRK13808 75 -PDAANGFILDGFPRTVP-QAEALDALLKDKQLKLDAVVELRVNEGALLARVETRV 128 (333)
T ss_pred -ccccCCEEEeCCCCCHH-HHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence 12245799997333333 333343 333333 4457789987 79999999884
No 83
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.39 E-value=4.1e-06 Score=73.36 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=60.7
Q ss_pred EEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh---c
Q 015668 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS---R 342 (403)
Q Consensus 271 l~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al---~ 342 (403)
+.|+|||||||+|+++++.+. +++|+..++ |+++. .+. ..+......++. -..+.-.++...+ .
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~-~~s----~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK-SDS----ELGKQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH-TTS----HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh-hhh----HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 589999999999999999986 788988665 44442 111 001111111110 0122223332222 3
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~ 389 (403)
..+.+|||.---+...-+.+.+.+.... .-.+++++++ +.+.+|...
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 4689999984344333232222222233 4467888998 788888765
No 84
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=1.1e-05 Score=72.44 Aligned_cols=122 Identities=21% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLS 338 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~ 338 (403)
..+.+|++.|.|||||-|.-.++++.++ |.+||..++ |++....|. .++.....++..- .+....+++
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gs----e~g~~I~~~i~~G~iVP~ei~~~LL~ 78 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGS----ERGALIKEIIKNGDLVPVEITLSLLE 78 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccC----hHHHHHHHHHHcCCcCcHHHHHHHHH
Confidence 4578999999999999999999999987 999999765 555431121 1222222222110 123344554
Q ss_pred HHhcC--C-CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhccc
Q 015668 339 RASRT--P-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 339 ~al~~--g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
.++.+ + ..++||.=--..+....|=+.+.+ ..-.+++|+++ ++|++|...|.+.
T Consensus 79 ~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~-~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 79 EAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG-DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 44332 2 229999743333333222111211 13445699998 8999999999875
No 85
>PRK04182 cytidylate kinase; Provisional
Probab=98.36 E-value=7.4e-07 Score=79.76 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHHH---HHHHHHHHHHHHHhcC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMG---RANAIFDVLLSRASRT 343 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~~---~a~~~~~~ll~~al~~ 343 (403)
+|+++|.|||||||+|+.+++.+. +.+++.|++...+. ..|... ..+....+ .....+...+......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKERGMSL-----EEFNKYAEEDPEIDKEIDRRQLEIAEK 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHcCCCH-----HHHHHHhhcCchHHHHHHHHHHHHHhc
Confidence 689999999999999999999886 67888665443332 123210 01100000 0111122222222224
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+.++|+|..... ++ +... ...+|++.+| +++.+|..+|.
T Consensus 74 ~~~~Vi~g~~~~------~~--~~~~-~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 74 EDNVVLEGRLAG------WM--AKDY-ADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCCEEEEEeecc------eE--ecCC-CCEEEEEECCHHHHHHHHHhcc
Confidence 567888864321 11 1111 3455788887 78999998885
No 86
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=2.2e-06 Score=77.92 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=61.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccC-CC-hHHHHHHHHH---HHHH---------
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH-NY-SERFQCLMGR---ANAI--------- 332 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~-~~-~~~~~~~~~~---a~~~--------- 332 (403)
++++++|++||||||+++.++..... .+.++...+ ......+. .+. .+ ...+...++. +..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYI-TRPASAGS-ENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEEC-CCccchhH-HhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 57899999999999999999887642 222221111 00000000 000 00 1111111110 0000
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+ -++.++..|.+||+|.+ +..+... .+.+. ...+|+++++ +++.+|+.+|.+
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~---~~~~~~~---~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGS---RAHLPQA---RARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred cH-HHHHHHhCCCEEEEeCh---HHHHHHH---HHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 01 24556788999999876 2222222 22233 6777889887 899999998854
No 87
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.35 E-value=4.2e-06 Score=75.31 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=62.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
...|+++|++||||||+++.++..+. +..+++|..+++.. |..-...+.. ......++.. +++..+.. .
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~--g~~i~~~~~~~g~~~fr~~e~----~~l~~l~~-~ 73 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRT--GADIGWVFDVEGEEGFRDREE----KVINELTE-K 73 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHh--CcCHhHHHHHhCHHHHHHHHH----HHHHHHHh-C
Confidence 45699999999999999999999876 66788887666543 3100000000 0011111111 23323223 3
Q ss_pred CeEEEeCC---CCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+|+... -..+..|. .+... -.+||++.| +++++|+..+.
T Consensus 74 ~~~vi~~ggg~v~~~~~~~----~l~~~--~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRN----RLSAR--GVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred CCEEEEcCCchhCCHHHHH----HHHhC--CEEEEEeCCHHHHHHHHhCCC
Confidence 34555542 23344343 23333 257899997 89999997653
No 88
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.34 E-value=9.3e-07 Score=86.97 Aligned_cols=99 Identities=25% Similarity=0.281 Sum_probs=75.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
.++|+|+|.|||||||++.++...+. +++++.|. -|. |+.+...+ ..++..++
T Consensus 269 ~eiV~~vgfp~sGks~f~a~~~~~~~---y~~vn~d~-------lg~---------~~~C~~~~--------~e~l~~~~ 321 (422)
T KOG2134|consen 269 GEIVVAVGFPGSGKSTFAAKRVVPNG---YKIVNADT-------LGT---------PQNCLLAN--------AEALKHGK 321 (422)
T ss_pred CcEEEEEecCCCCcchhhhhhcccCc---eeEeeccc-------CCC---------chhhHHHH--------HHHhhccc
Confidence 49999999999999999999988775 88888874 232 23343322 23568999
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+||+|+||+....|+.+++...... .+..+.+.+. +..+..+..|.
T Consensus 322 sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~ 369 (422)
T KOG2134|consen 322 SVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRE 369 (422)
T ss_pred EEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchh
Confidence 9999999999999999988887765 6666666666 66666666665
No 89
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.34 E-value=9.1e-07 Score=79.68 Aligned_cols=123 Identities=16% Similarity=0.292 Sum_probs=74.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCChH---HHHHHHHHHHHHHH------
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSE---RFQCLMGRANAIFD------ 334 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~~---~~~~~~~~a~~~~~------ 334 (403)
.++.++|+|+||||||-+++...+.+ .+.++++-|+++..-.-+.+ ..+.. +++..++.+-....
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD---~a~keqRgr~~~~iEk~ISaiqedtdwp 78 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSAD---KAAKEQRGRFECHIEKCISAIQEDTDWP 78 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchh---hhHHHHhchHHHHHHHHHHHHhcccCCC
Confidence 47889999999999999988765542 22456777877643211111 11111 12222222110000
Q ss_pred HHHHHHh-----cC-CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 335 VLLSRAS-----RT-PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 335 ~ll~~al-----~~-g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
-.+.+.. .. ...++.|..+.++++|.++.+.+++.+ -+-++|+.+- .+++++|..|..
T Consensus 79 pqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsd 144 (291)
T KOG4622|consen 79 PQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSD 144 (291)
T ss_pred chheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccccc
Confidence 0000110 12 346778999999999998777777666 6778899886 999999999973
No 90
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.34 E-value=2.6e-06 Score=76.63 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=60.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCcc-EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--HH---H------HHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR-YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--AN---A------IFD 334 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~-~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--a~---~------~~~ 334 (403)
++++++|+|||||||+++.++..++... ..++.++.-|... ..|..-.......+...... .. + -..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS-AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC-CCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 5789999999999999999988765321 2221111111100 00100000000111110000 00 0 000
Q ss_pred HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..+..++.++.+||+|.. +..+. .+.+ +....+++++++ +++.+|+..|.+
T Consensus 81 ~~i~~~~~~g~~vv~~g~---~~~~~----~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGS---RAVLP----EARQRYPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred HHHHHHHhcCCEEEEECC---HHHHH----HHHHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 122334578899999986 22222 2222 225677888887 899999999864
No 91
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.33 E-value=2.5e-06 Score=75.74 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=62.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
+|+++|.|||||||+|+.+++.+. +.+++.|.+..++. ..|.... .+ ..+..........+...+......+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAKMGLDLI-EF-LNYAEENPEIDKKIDRRIHEIALKEKN 76 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHHcCCCHH-HH-HHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999886 67888876554442 1221100 00 000000001111222223233335568
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+|+|..... ++ +..... .+|++.+| +.+.+|..+|.
T Consensus 77 ~Vi~g~~~~------~~--~~~~~d-~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 77 VVLESRLAG------WI--VREYAD-VKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred EEEEecccc------ee--ecCCcC-EEEEEECCHHHHHHHHHHcc
Confidence 889975431 11 122113 45688887 78999999886
No 92
>PLN02459 probable adenylate kinase
Probab=98.31 E-value=4.4e-06 Score=79.77 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=65.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh-
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS- 341 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al- 341 (403)
.|+++|+|||||||.|+.+++.+. +.+|++.+ +|+++.. +. ..+.....++++- ......++...+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~~-~t----~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIKS-SG----PLGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHhc-cc----hhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 366689999999999999999886 78888755 5665531 11 1111111121110 011222222222
Q ss_pred ----cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 342 ----RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 ----~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
...+.+|||.---+. .+...+..+. ..-.+++|+.| +++++|...|.
T Consensus 103 ~~~~~~~~g~iLDGFPRt~-~Qa~~Le~~~--~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTV-RQAEILEGVT--DIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred cccccCCceEEEeCCCCCH-HHHHHHHhcC--CCCEEEEEECCHHHHHHHhhccc
Confidence 235689999843333 3333333221 23457788998 78999999884
No 93
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.31 E-value=1.7e-05 Score=72.20 Aligned_cols=123 Identities=17% Similarity=0.064 Sum_probs=66.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEec----c---HHHHHHhhcCCCcccCCChHHHH-HH--HHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERFQ-CL--MGRANAIF 333 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~-~~--~~~a~~~~ 333 (403)
..+|++.|+|||||||+++.|++.+...+ ++++. + +.+++-+. .+. .....+... .+ ..++ ..+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~l~~~~r~-~~~ 78 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLL-NEN--DEPLTDKAEALLFAADRH-EHL 78 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc-CCC--ccCCCHHHHHHHHHHHHH-HHH
Confidence 36899999999999999999998876432 22221 1 22333321 111 011111111 11 1111 123
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCHHH--------HHHHHHHHhc-C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 334 DVLLSRASRTPRNFIIDQTNVFKSA--------RKRKLRLFVN-F---RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~--------R~~~~~~~~~-~---~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
...+..++.++..||+|-...+.-. -..|+..+.. . .+-.+++++++ +++++|...|..
T Consensus 79 ~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 79 EDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 3445566678899999953211100 0123333322 1 13456788887 899999988854
No 94
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.28 E-value=2.7e-06 Score=73.38 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=57.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
+|+++|+|||||||+|++|++.+. +.+++.|.+..+.. +. ...+..........+.+.+... ..+.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~e~~--~~------~~~~~~~~~~i~~~l~~~~~~~-~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRTEEV--GK------LASEVAAIPEVRKALDERQREL-AKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCHHHH--HH------HHHHhcccHhHHHHHHHHHHHH-hhCCCE
Confidence 588999999999999999999876 55677673322110 00 0000000011112222233222 345579
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhccc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
|+|..... ++ +.. ..-.+|++.+| +...+|..+|...
T Consensus 69 Vidg~~~~------~~--~~~-~~~~~i~l~~~~~~r~~R~~~r~~~ 106 (147)
T cd02020 69 VLEGRDIG------TV--VFP-DADLKIFLTASPEVRAKRRAKQLQA 106 (147)
T ss_pred EEEeeeee------eE--EcC-CCCEEEEEECCHHHHHHHHHHHHHh
Confidence 99986431 11 111 12345677776 7888999887533
No 95
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=1.2e-05 Score=70.77 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=63.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCCcc-c-CC---ChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLR-K-HN---YSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~~~-~-~~---~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
+|.+.|+|||||||+|+.+++.+. +-++|.-.++.+|.. .|..- + +. .++.++..+++- +.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~r------q~e~a- 71 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRR------QKELA- 71 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHH------HHHHH-
Confidence 577889999999999999999987 677777665555532 34210 0 00 012233333221 22222
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+ ..++|++.--. -|| ++.+..+ -||+.+| ++..+|.++|+
T Consensus 72 ~-~~nvVlegrLA------~Wi--~k~~adl-kI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 72 K-EGNVVLEGRLA------GWI--VREYADL-KIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred H-cCCeEEhhhhH------HHH--hccccce-EEEEeCcHHHHHHHHHHhc
Confidence 3 77899986321 233 2223233 3688888 89999999997
No 96
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.26 E-value=6.1e-06 Score=74.15 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
++|+++|++||||||+++.|++.++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5899999999999999999998765
No 97
>PRK14526 adenylate kinase; Provisional
Probab=98.26 E-value=4.6e-06 Score=77.63 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=62.1
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh--
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS-- 341 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al-- 341 (403)
|+++|+|||||||+++.+++.+. +.+++.+.+ |+++. .+. ..+.....+++.- ......++...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~-~~t----~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~ 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENIL-NST----PLGKEIKQIVENGQLVPDSITIKIVEDKINT 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcc-cCC----hhhHHHHHHHHcCccCChHHHHHHHHHHHhc
Confidence 67899999999999999998876 677776655 55432 111 0111111111110 011112222222
Q ss_pred -cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.....+|||.---+.+ +...++.+ .....++++..| +++++|...|.
T Consensus 75 ~~~~~g~ilDGfPR~~~-Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 IKNNDNFILDGFPRNIN-QAKALDKF--LPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred ccccCcEEEECCCCCHH-HHHHHHHh--cCCCEEEEEECCHHHHHHHHHCCC
Confidence 2356799996433333 32233222 123456677777 78999999885
No 98
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.25 E-value=4.9e-06 Score=75.89 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=24.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+.+|+|+|++||||||++++|.+.++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999998876
No 99
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.25 E-value=2.1e-05 Score=71.99 Aligned_cols=123 Identities=16% Similarity=0.074 Sum_probs=64.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEec-------cHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG-------TNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDV 335 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls-------~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~ 335 (403)
..+|++.|++||||||+++.|.+.+... .++... .+.+++.+. +...... +....-.+..+. ..+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~-~~~~~ 79 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLL--DPNEEMDDKTELLLFYAARA-QHLEE 79 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHh--ccccCCCHHHHHHHHHHHHH-HHHHH
Confidence 4689999999999999999998876332 122211 012333321 1000000 000001111121 12233
Q ss_pred HHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhc-----CCcEEEEEECCh-HHHHHHHHHhc
Q 015668 336 LLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-----FRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-----~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+..++.+|..||+|-.-.+.-.. ..|+..+.. ..+-.++++++| +++++|..+|.
T Consensus 80 ~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 80 VIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 444566889999999321111000 123333322 124577899887 89999999986
No 100
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.22 E-value=1.2e-05 Score=71.74 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=33.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
+.|+++|+|||||||+|+.+++.+. +.+++.|.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~~ 41 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQSTS 41 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHh
Confidence 4688899999999999999999986 67889999887653
No 101
>PRK08233 hypothetical protein; Provisional
Probab=98.21 E-value=5e-06 Score=74.59 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=26.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l 298 (403)
..+|++.|.|||||||+|++|+..++....+.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 478899999999999999999998864333334
No 102
>PRK13973 thymidylate kinase; Provisional
Probab=98.21 E-value=3.3e-05 Score=71.89 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=71.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec---------cHHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFD 334 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~ 334 (403)
..+|++.|++||||||.++.+++.+...++.++. .+.+|+.+.. +.. ...++.-..+.-.+. ..+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~-~~~--~~~~~~~~~ll~~a~r~~~~~ 79 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLS-GAA--ELYGPRMEALLFAAARDDHVE 79 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcC-CCc--cCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988544333332 2445665431 110 112222122211121 1233
Q ss_pred HHHHHHhcCCCeEEEeCCCC----CHHHH----HHHHHHHhc----C-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 335 VLLSRASRTPRNFIIDQTNV----FKSAR----KRKLRLFVN----F-RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~----~~~~R----~~~~~~~~~----~-~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.++.-++.+|..||.|--.. +...+ ..|+..+.. . .+-.++++++| +++++|..+|..
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 45566788999999987331 11111 113333322 1 25567899997 789999998864
No 103
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=1.3e-05 Score=80.75 Aligned_cols=122 Identities=20% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-----HHHHHHhhcCCCcccCCC---hHHHHHHHHH-HHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-----NLILEQMKVPGLLRKHNY---SERFQCLMGR-ANAIFD 334 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-----D~ir~~l~~~g~~~~~~~---~~~~~~~~~~-a~~~~~ 334 (403)
....+|+|+|+|++|||.++.++.+.+. |.-+++ -..+..+...-.. ...+ +.....+.++ +..++.
T Consensus 26 ~~~~~ivmvglpA~gKt~is~kl~ryl~---w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~ 101 (438)
T KOG0234|consen 26 GSKLVIVMVGLPARGKTYISSKLTRYLN---WLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALN 101 (438)
T ss_pred CCceEEEEecCCccCcchhhhhHHHHHH---hhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhh
Confidence 4579999999999999999999999887 555443 2444443211100 0011 1111222232 334455
Q ss_pred HHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHH
Q 015668 335 VLLSRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVK 389 (403)
Q Consensus 335 ~ll~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---pe~~~~R~~~ 389 (403)
.++.... ..|+++|+|+||.++..|+.++..+.+.+.+.+.++++ ++.++.+|..
T Consensus 102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~ 160 (438)
T KOG0234|consen 102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIR 160 (438)
T ss_pred hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhh
Confidence 6665554 68999999999999999998777775223444444433 3567777766
No 104
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=2.9e-05 Score=72.93 Aligned_cols=127 Identities=18% Similarity=0.251 Sum_probs=88.6
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CC--Ccc---cCCChHHHHH-----------
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PG--LLR---KHNYSERFQC----------- 324 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g--~~~---~~~~~~~~~~----------- 324 (403)
.+..+.+|++-|.||-||||+|..++.++.- -.+|++|.+|+-|.. -+ ..+ .+.| .+|+.
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy-~Awkalr~~~~~~pii 161 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGI--RSVISTDSIREVLRKIISPELLPTLHTSSY-DAWKALRDPTDENPII 161 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCC--ceeecchHHHHHHHHhCCHHhcchhhHhHH-HHHHHhcCCCCCcchh
Confidence 5567899999999999999999999999984 478999999988752 22 111 0111 12322
Q ss_pred --HHHHHHH---HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhcccc
Q 015668 325 --LMGRANA---IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEM 394 (403)
Q Consensus 325 --~~~~a~~---~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~pe~~~~R~~~R~~~~ 394 (403)
..++++. -.+..+++|+..|.++||...++-+..-+... + +.+ -..++++.++++.+.|..+|.+..
T Consensus 162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~--~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t 234 (299)
T COG2074 162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEA--L-GNNVFMFMLYIADEELHRERFYDRIRYT 234 (299)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhh--h-ccceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 2344443 35678899999999999999999997544321 2 222 233456677789999999997543
No 105
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.16 E-value=2.8e-06 Score=71.33 Aligned_cols=105 Identities=23% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCccc---C---CC-hHHHHHHHHHHHHHHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK---H---NY-SERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~---~---~~-~~~~~~~~~~a~~~~~~ll~~al 341 (403)
|++.|.|||||||+|+.|.+.+. ..+. |.+............ . .. ......+.+.+. .... ..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~ 70 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DIIR--DIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSII----QAIR-RM 70 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHHH--HHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHH----HHHH-HH
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHHH--HHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHH----Hhhc-cc
Confidence 78999999999999999998851 1111 221111100010000 0 00 111111222211 1111 34
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEE-EEECCh-HHHHHHHHHhccc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAV-VVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~v-v~l~~p-e~~~~R~~~R~~~ 393 (403)
..+.++|+|...... .... .... |+++++ +++.+|..+|...
T Consensus 71 ~~~~~~iid~~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 71 NKGRNIIIDGILSNL----------ELERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp TTTSCEEEEESSEEE----------CETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ccCCcEEEecccchh----------cccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 788999999875421 1111 2222 888887 8999999998753
No 106
>PRK06696 uridine kinase; Validated
Probab=98.15 E-value=6.3e-06 Score=77.18 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i 303 (403)
..+.+|.+.|.|||||||+|++|++.++.. .+++++.|++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 357899999999999999999999988532 3677787754
No 107
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.13 E-value=1.5e-05 Score=72.61 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+|++.|++||||||+++.|.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998754
No 108
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.11 E-value=1.4e-05 Score=73.44 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=32.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
.+|.++|.+||||||+++.+.+.+. +.+++.|.+..++.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHH
Confidence 4689999999999999999998754 67899998766553
No 109
>PRK08356 hypothetical protein; Provisional
Probab=98.10 E-value=3.5e-05 Score=70.56 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCCh-H-HH------HHHHHHHHHH----
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYS-E-RF------QCLMGRANAI---- 332 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~-~-~~------~~~~~~a~~~---- 332 (403)
..+|+++|+|||||||+|+.|. +.. +.+|+..+. ++.+...+. ++.+- . .+ +...+.+...
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g---~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~y 78 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKG---FCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCC---CcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhc
Confidence 3678999999999999999995 443 446665532 221111111 11100 0 00 1112211110
Q ss_pred -----HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 333 -----FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 333 -----~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..++. ++....+|||.- -+...++. +.... ..+|++++| +++.+|+.+|..
T Consensus 79 G~~~~~~~~~~~-~~~~~~ividG~-r~~~q~~~----l~~~~-~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 79 GEDILIRLAVDK-KRNCKNIAIDGV-RSRGEVEA----IKRMG-GKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred CcHHHHHHHHHH-hccCCeEEEcCc-CCHHHHHH----HHhcC-CEEEEEECCHHHHHHHHHhcCC
Confidence 1112222 233457999965 44443332 33322 356788886 889999988864
No 110
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.08 E-value=1.5e-05 Score=72.51 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+|.++|.+||||||+++.+.+... +.+++.|.+..++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~ 37 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQV 37 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHH
Confidence 478999999999999999998753 6789999875544
No 111
>PRK13975 thymidylate kinase; Provisional
Probab=98.07 E-value=3.6e-05 Score=70.11 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH-----HHHHHhhcCCCcccCCChHHHHHHH--HHHHHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-----LILEQMKVPGLLRKHNYSERFQCLM--GRANAIFDVLLSR 339 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D-----~ir~~l~~~g~~~~~~~~~~~~~~~--~~a~~~~~~ll~~ 339 (403)
.+|++.|++||||||+++.|++.+... +.....| .+++-+. .+. ........+. ++. +.+++ ++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~-~~~~~~~~~~g~~ir~~~~-~~~----~~~~~~~~~f~~~r~-~~~~~-i~~ 74 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF-WTCEPTDGKIGKLIREILS-GSK----CDKETLALLFAADRV-EHVKE-IEE 74 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC-eeECCCCChHHHHHHHHHc-cCC----CCHHHHHHHHHHHHH-HHHHH-HHH
Confidence 689999999999999999999998632 2222222 2333221 110 0011111111 111 11222 333
Q ss_pred HhcCCCeEEEeCCCC----CHHHH---HHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNV----FKSAR---KRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~----~~~~R---~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
++.. ..||.|---. +...+ ..++...... .+-.+++++++ +++++|..+|.
T Consensus 75 ~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 75 DLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 3444 6789984211 11110 1122222222 23357799987 89999999885
No 112
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.07 E-value=4.8e-05 Score=69.88 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..++|+++|++||||||+++.++..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 468999999999999999999998875
No 113
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.06 E-value=2e-05 Score=77.63 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=61.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
...|+++|+|||||||+++.+++.+. +.+++.|..+++.. |..-...+....+..... ...+++..++....
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~~~--G~~i~ei~~~~G~~~fr~---~e~~~l~~ll~~~~ 204 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIEREA--GLSVSEIFALYGQEGYRR---LERRALERLIAEHE 204 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHHHh--CCCHHHHHHHHCHHHHHH---HHHHHHHHHHhhCC
Confidence 46899999999999999999999886 55667787665542 321100000000111111 11223333333333
Q ss_pred eEEEeC-CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 346 NFIIDQ-TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 346 ~vIlD~-Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+||.. ..+....+ .+..+.. ...+||+.+| +.+.+|+.+|.
T Consensus 205 ~~VI~~Ggg~v~~~~--~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 205 EMVLATGGGIVSEPA--TFDLLLS--HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred CEEEECCCchhCCHH--HHHHHHh--CCEEEEEECCHHHHHHHHhcCC
Confidence 345544 33211111 1111222 3457889887 88999998875
No 114
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.01 E-value=3.5e-05 Score=70.66 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+.+|.++|.+||||||+++.+.+ +. +.+++.|.+..++
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 39 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEV 39 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHH
Confidence 35799999999999999999987 54 6789999876554
No 115
>PRK06761 hypothetical protein; Provisional
Probab=97.99 E-value=5.7e-05 Score=73.17 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=72.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEE---EeccHH-HHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYI---LLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v---~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
.+|+++|+|||||||+++.+++.+....+- ....|. ....+ .+. .......+....++.......+++.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~--~~~~~eer~~~l~~~~~f~~~l~~~~~~ 79 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGV--ACFTKEEFDRLLSNYPDFKEVLLKNVLK 79 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccc--cCCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 589999999999999999999988643221 111111 11111 111 1111234444444444434456667778
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.|..+|+--.-+....|..+-...-...++..++ +.| +.+.+|...|-
T Consensus 80 ~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw 128 (282)
T PRK06761 80 KGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRW 128 (282)
T ss_pred cCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHH
Confidence 9999999887777777765332122222455566 667 77888887775
No 116
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.99 E-value=0.00012 Score=64.20 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=84.2
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc------CCCcccC---CChHH-----HHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV------PGLLRKH---NYSER-----FQCLMG 327 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~------~g~~~~~---~~~~~-----~~~~~~ 327 (403)
.+...++|+|-|.|-||||++|..+..-. +..|.+|.-|.+++.+.- .|-..+. ..... ...+.+
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~-a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e 97 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLA-AEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE 97 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHh-hcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence 34567999999999999999999987544 345999999998877631 1100000 00111 133455
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 328 ~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..-.+..+...+.+|-++|.|+.-.++..--.-++.+.++ ++.+|=+.+| |+..+|-..|..
T Consensus 98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~-~v~~VGV~~p~E~~~~Re~rr~d 162 (205)
T COG3896 98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGC-RVWMVGVHVPDEEGARRELRRGD 162 (205)
T ss_pred HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCC-ceEEEEeeccHHHHHHHHhhcCC
Confidence 554445556656679999999999888765443334444443 7888888888 777666665653
No 117
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.98 E-value=8.8e-05 Score=72.22 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=60.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH-hcC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA-SRT 343 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a-l~~ 343 (403)
..++|+++|++||||||+++.+... . +..+ |.+- ...+....+.+ ... ...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~-g---~~~~--d~~~--------------~~L~~~l~~~~--------~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL-G---YYCV--DNLP--------------PSLLPKLVELL--------AQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc-C---CeEE--CCcC--------------HHHHHHHHHHH--------HhcCCCC
Confidence 4579999999999999999999632 2 4444 2110 01111111111 110 124
Q ss_pred CCeEEEeCCCCC-HHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668 344 PRNFIIDQTNVF-KSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 344 g~~vIlD~Tn~~-~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~ 389 (403)
+-.+++|.++.. .......++.+++.+ .+.+||++++ +++.+|..+
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence 568999998652 122334566666655 6778999997 899999875
No 118
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.98 E-value=2.1e-05 Score=71.44 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.++|+++|++||||+|++++|.+..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46899999999999999999999875
No 119
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=1.4e-05 Score=72.04 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=64.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc--cCCC--hHHHHHHHHHHH----------
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGRAN---------- 330 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~--~~~~--~~~~~~~~~~a~---------- 330 (403)
...+++++|++|+||||++++|.+... -...||.-. |.. ..|... ++.| ...++.++++-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~TT-R~p--R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATT-RKP--RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEecc-CCC--CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 357999999999999999999998763 123333221 100 011111 1111 122222222100
Q ss_pred --HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhcc
Q 015668 331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFK 392 (403)
Q Consensus 331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p--e~~~~R~~~R~~ 392 (403)
-.....++.++..|++||+|-..- -. ++ + -..+.....+++..| +++.+|+..|..
T Consensus 78 yYGT~~~~ve~~~~~G~~vildId~q-Ga-~q--v--k~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 78 YYGTSREPVEQALAEGKDVILDIDVQ-GA-LQ--V--KKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred cccCcHHHHHHHHhcCCeEEEEEehH-HH-HH--H--HHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 001234556678999999997532 11 11 1 112335666777666 899999999874
No 120
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.95 E-value=7.1e-05 Score=78.12 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=32.3
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
|+++|+|||||||+++.+++.+. +.++++|.++++.
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~~ 38 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIERR 38 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence 78999999999999999999886 7888999988774
No 121
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.93 E-value=2.1e-05 Score=72.76 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=33.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
.+.+|.++|.+||||||+++.+.+.++...+.+++.|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 478999999999999999999999885445677888864
No 122
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.93 E-value=4e-05 Score=69.23 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+|.++|.|||||||+++.+.+ +. +.+++.|.+..++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhh
Confidence 478999999999999999988 44 7789999876555
No 123
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.92 E-value=0.00011 Score=77.81 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=64.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
...|+|+|+|||||||+++.+++.+. +-.+++|...++.. |..-..-+...-+....+. -.+++..++...
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~~--g~si~eif~~~Ge~~FR~~---E~~~l~~~~~~~- 76 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIEREI--GMSIPSYFEEYGEPAFREV---EADVVADMLEDF- 76 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHH--CcCHHHHHHHHHHHHHHHH---HHHHHHHHHhcC-
Confidence 35688999999999999999999997 67888898776643 3210000111101122111 112333333333
Q ss_pred eEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668 346 NFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 346 ~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.||.. +-..+..|+.+.+.+++. -.+||+..+ +++.+|...+
T Consensus 77 ~~VIs~GGG~v~~~~n~~~L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 77 DGIFSLGGGAPMTPSTQHALASYIAHG--GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred CeEEECCCchhCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHhCC
Confidence 445543 234455555322233332 257899986 8999998643
No 124
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.89 E-value=2.5e-05 Score=71.31 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
+|.++|.|||||||+|+.+++.+.. ..+|+.|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~--~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC--CeEEccccc
Confidence 5788999999999999999998853 677888865
No 125
>PLN02199 shikimate kinase
Probab=97.87 E-value=9.1e-05 Score=71.85 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=62.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-~~~~~~a~~~~~~ll~~al~~g 344 (403)
..-|+|+|++||||||+++.+++.+. +..|++|.+.++.. .|..-..-+ ..+ +...... ..+++..+...
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~-~G~sI~eIf-~~~GE~~FR~~---E~e~L~~L~~~- 172 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAM-NGTSVAEIF-VHHGENFFRGK---ETDALKKLSSR- 172 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHh-cCCCHHHHH-HHhCHHHHHHH---HHHHHHHHHhc-
Confidence 35689999999999999999999886 78899998877642 132100000 000 1111111 12233333333
Q ss_pred CeEEEeCC---CCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
..+||... -..+..| +.+.. . .+||++.+ +++.+|+..
T Consensus 173 ~~~VIStGGG~V~~~~n~----~~L~~--G-~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 YQVVVSTGGGAVIRPINW----KYMHK--G-ISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCEEEECCCcccCCHHHH----HHHhC--C-eEEEEECCHHHHHHHHhh
Confidence 35566541 2333333 22331 2 46899997 899999985
No 126
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.86 E-value=3.8e-05 Score=71.10 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhC
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...+.+|+++|+|||||||+++.|.+..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3567999999999999999999997643
No 127
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.86 E-value=0.00015 Score=67.68 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+|++-|.-||||||+++.|++.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998775
No 128
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.85 E-value=0.00019 Score=63.61 Aligned_cols=102 Identities=22% Similarity=0.186 Sum_probs=67.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
||+-++.+|+||||+|..|..-+++ |-++-.|.| .+. + . ...++.+. +.+ +......|
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~--wgHvQnDnI------~~k-~----~---~~f~~~~l---~~L---~~~~~~vV 58 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE--WGHVQNDNI------TGK-R----K---PKFIKAVL---ELL---AKDTHPVV 58 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC--CCccccCCC------CCC-C----H---HHHHHHHH---HHH---hhCCCCEE
Confidence 4677899999999999999998875 777877763 121 0 1 12222221 111 22677899
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCC--------c---EEEEEECC-h-----HHHHHHHHHhc
Q 015668 348 IIDQTNVFKSARKRKLRLFVNFR--------K---IAVVVFPK-P-----EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~--------~---~~vv~l~~-p-----e~~~~R~~~R~ 391 (403)
|+|-.|.....|+.++..+.... . +++.|+.. + ..+.+|+.+|-
T Consensus 59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG 119 (168)
T PF08303_consen 59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG 119 (168)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999888877532 2 23445543 2 35777888875
No 129
>PLN02924 thymidylate kinase
Probab=97.84 E-value=0.00018 Score=67.39 Aligned_cols=120 Identities=16% Similarity=0.067 Sum_probs=66.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccE--EEec-----cH---HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG-----TN---LILEQMKVPGLLRKHNYSERFQCLMGRANAIFD 334 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls-----~D---~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~ 334 (403)
...+|++.|++||||||.++.|++.+...++ +.+. +. .+++-+. .+. .-......+-...+++.. .
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~-~~~-~~~~~~~~llf~adR~~~--~ 90 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS-NKS-QLDDRAIHLLFSANRWEK--R 90 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHHH--H
Confidence 3689999999999999999999988764322 2211 11 2444332 111 000001111111222221 2
Q ss_pred HHHHHHhcCCCeEEEeCCCCCHHHH-------HHHHHHHhcCC--cEEEEEECCh-HHHHHHHH
Q 015668 335 VLLSRASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNFR--KIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~ 388 (403)
..+..++.+|..||.|--..+.-+. ..|+..+.... +-.+++++.| +++++|..
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 3456678899999999854432111 12344333322 4567899986 88888854
No 130
>PLN02422 dephospho-CoA kinase
Probab=97.80 E-value=0.00018 Score=67.88 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|.++|.+||||||+++.+.+ .. +.+++.|.+..++
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g---~~~idaD~~~~~l 38 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SG---IPVVDADKVARDV 38 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehhHHHHHH
Confidence 4789999999999999999984 43 7889999875554
No 131
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.78 E-value=0.00016 Score=66.60 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=30.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|.++|.+||||||+++.++. .. +.+|+.|.+..++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~ 38 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDI 38 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHH
Confidence 4789999999999999999986 33 7889999764444
No 132
>PRK07667 uridine kinase; Provisional
Probab=97.74 E-value=0.0002 Score=65.50 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i 303 (403)
..+|.++|+|||||||+|+.+.+.+... ...+++.|.+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4799999999999999999999876432 3678888874
No 133
>PRK13974 thymidylate kinase; Provisional
Probab=97.74 E-value=0.00033 Score=65.06 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=65.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE------EEecc--------HHHHHHhhc-CCCcccCCChHHHHH---HHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY------ILLGT--------NLILEQMKV-PGLLRKHNYSERFQC---LMG 327 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~------v~ls~--------D~ir~~l~~-~g~~~~~~~~~~~~~---~~~ 327 (403)
.++|++.|++||||||.++.+++.++..+. +++.. ..+|+.+.. .|.. ...+.-.. +.+
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~---~~~~~~~~llf~ad 79 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDN---SPSPLAELLLYAAD 79 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCccc---CCCHHHHHHHHHHH
Confidence 478999999999999999999988764321 11111 124444321 1110 01111111 122
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCC-HHH-------HHHHHHHHh---c--CCcEEEEEECCh-HHHHHHHHHhc
Q 015668 328 RANAIFDVLLSRASRTPRNFIIDQTNVF-KSA-------RKRKLRLFV---N--FRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 328 ~a~~~~~~ll~~al~~g~~vIlD~Tn~~-~~~-------R~~~~~~~~---~--~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
++. .+..++.-++.+|..||.|-=-.+ -.. -..|+..+. . ..+-.++++++| +++.+|...|.
T Consensus 80 r~~-~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~ 156 (212)
T PRK13974 80 RAQ-HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK 156 (212)
T ss_pred HHH-HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 222 233345556788988887751111 000 011233332 1 125567899997 78899988774
No 134
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.74 E-value=9.8e-05 Score=68.25 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
....+|.++|++||||||+++.++..++.....+++.|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 3468999999999999999999998776433567777764
No 135
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00013 Score=63.39 Aligned_cols=101 Identities=27% Similarity=0.400 Sum_probs=54.2
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHH-HHHHHHHHHHHHHHHHhcCCCeE
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~-~~~~a~~~~~~ll~~al~~g~~v 347 (403)
|+++|-||.||||++.++++...- .|+-+ .|.+++.-...| |...++- ..+. .+ +...++-++.. -..
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~-~~i~i-sd~vkEn~l~~g------yDE~y~c~i~DE-dk-v~D~Le~~m~~-Gg~ 78 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGL-EYIEI-SDLVKENNLYEG------YDEEYKCHILDE-DK-VLDELEPLMIE-GGN 78 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCC-ceEeh-hhHHhhhcchhc------ccccccCccccH-HH-HHHHHHHHHhc-CCc
Confidence 678999999999999999987652 24443 233343321112 1122211 0000 01 11223333344 456
Q ss_pred EEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 348 IIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 348 IlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
|+|. +-+.+. +|+ -.+|++.+| +.+..|++.|.
T Consensus 79 IVDyHgCd~Fpe---rwf--------dlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 79 IVDYHGCDFFPE---RWF--------DLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred EEeecccCccch---hhe--------eEEEEEecCchHHHHHHHHcC
Confidence 7775 222221 111 245678888 89999999985
No 136
>PLN02842 nucleotide kinase
Probab=97.71 E-value=0.00032 Score=72.92 Aligned_cols=110 Identities=20% Similarity=0.268 Sum_probs=58.7
Q ss_pred EEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 015668 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-- 342 (403)
Q Consensus 270 ll~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~-- 342 (403)
|++|.|||||||.|+.+++.+. +.+|++++ +|.++. .+. ..+....+++.. -...+..++...+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLLR~ev~-~~T----~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~ 72 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG---LVHISTGDLLRAEVS-AGT----DIGKRAKEFMNSGRLVPDEIVIAMVTGRLSRE 72 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHhc-cCC----HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCc
Confidence 5799999999999999999886 56776655 455432 111 001111111110 00111112211111
Q ss_pred --CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
....+|||.---+.. + .+.+.... .-.+++++.+ +.+++|...|.
T Consensus 73 ~~~~~G~ILDGfPRt~~-Q---a~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 73 DAKEKGWLLDGYPRSFA-Q---AQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred cccCCcEEEeCCCCcHH-H---HHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 234588897323222 2 22233333 3457789997 78999988874
No 137
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00032 Score=64.57 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=67.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE-EEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--HHHHHHHHHHHHhc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--ANAIFDVLLSRASR 342 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~-v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--a~~~~~~ll~~al~ 342 (403)
..+|++.|+=|+||||+|+.|++.++.+.. ..+..|-+++.+.. . -.+|....+. ..+.+..+. .+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~--d------~~~yaf~~QiyFL~~Rfk~~k-~~~~ 74 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYE--D------PERYAFLLQIYFLLNRFKKIK-KALS 74 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHH--h------HHHhhHHHHHHHHHHHHHHHH-HHhc
Confidence 468899999999999999999999985432 33333444444321 0 1122211110 011111111 1222
Q ss_pred C-----CCeEEEeC----------CCCCHHHHHHH---HH----HHhcCC--cEEEEEECCh-HHHHHHHHHhccccCcc
Q 015668 343 T-----PRNFIIDQ----------TNVFKSARKRK---LR----LFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKE 397 (403)
Q Consensus 343 ~-----g~~vIlD~----------Tn~~~~~R~~~---~~----~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~~~g~~ 397 (403)
. +++++-|. .|++++.-.-. ++ .+.... +-.+|++++. +++++|..+|.++.-..
T Consensus 75 ~~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~ 154 (216)
T COG1428 75 DKNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEID 154 (216)
T ss_pred ccccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccc
Confidence 2 33444443 33344322211 22 111122 4567899997 99999999999876654
Q ss_pred ccc
Q 015668 398 QIM 400 (403)
Q Consensus 398 Vp~ 400 (403)
..+
T Consensus 155 ~~~ 157 (216)
T COG1428 155 NFD 157 (216)
T ss_pred ccc
Confidence 443
No 138
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.69 E-value=0.00013 Score=66.11 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=24.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.++|+|+|++||||||++++|.+.++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 478999999999999999999998875
No 139
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.67 E-value=0.00026 Score=62.60 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC---
Q 015668 275 PASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQ--- 351 (403)
Q Consensus 275 PGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~--- 351 (403)
|||||||+++.+++.+. +-.++.|...++.. |..-..-+...-+... ++.-.+++..++... +.||..
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~~--g~si~~i~~~~G~~~f---r~~E~~~l~~l~~~~-~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEERT--GMSISEIFAEEGEEAF---RELESEALRELLKEN-NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHH--TSHHHHHHHHHHHHHH---HHHHHHHHHHHHCSS-SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHHHh--CCcHHHHHHcCChHHH---HHHHHHHHHHHhccC-cEEEeCCCC
Confidence 79999999999999997 78898998776643 3110000000001111 112223444444544 666665
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 352 TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 352 Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+-..+..|+ .++ ..-.+||++.+ +++.+|+..+..
T Consensus 72 ~~~~~~~~~----~L~--~~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 72 IVLKEENRE----LLK--ENGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp GGGSHHHHH----HHH--HHSEEEEEE--HHHHHHHHHHHCT
T ss_pred CcCcHHHHH----HHH--hCCEEEEEeCCHHHHHHHHhCCCC
Confidence 444444443 233 23457888886 899999987764
No 140
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.67 E-value=0.00012 Score=68.56 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=28.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i 303 (403)
+|.++|.+||||||+|+.++..+. .....+|+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 467899999999999999998773 234667777854
No 141
>PLN02772 guanylate kinase
Probab=97.54 E-value=0.00056 Score=68.93 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..++|+++|++|+||||++++|.++.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 458999999999999999999988765
No 142
>PRK07933 thymidylate kinase; Validated
Probab=97.54 E-value=0.00078 Score=62.73 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=66.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCcc--EEEec---------cHHHHHHhhcCCCcccCCChHHHHHH---HHHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG---------TNLILEQMKVPGLLRKHNYSERFQCL---MGRANAIF 333 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~---~~~a~~~~ 333 (403)
+|++.|+-||||||.++.|.+.+..++ ++.+. .+.+|+.+. +........+....+ .+++.. +
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~--~~~~~~~~~~~~~~llf~a~R~~~-~ 78 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALH--GRHGDLADSVYAMATLFALDRAGA-R 78 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHc--CCCCcccCCHHHHHHHHhhhhhhh-H
Confidence 789999999999999999998876432 22221 134555443 110000001111111 122221 2
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCH----HHH---------HHHHHHHhc--C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 334 DVLLSRASRTPRNFIIDQTNVFK----SAR---------KRKLRLFVN--F---RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~----~~R---------~~~~~~~~~--~---~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
. .+.-++.+|..||.|--..+- ..+ ..|+..+.. . .+=.+++++.| ++.++|..+|..
T Consensus 79 ~-~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~ 155 (213)
T PRK07933 79 D-ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA 155 (213)
T ss_pred H-HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence 2 244567889999999732222 111 224444432 1 14467899986 889999998864
No 143
>PLN02165 adenylate isopentenyltransferase
Probab=97.52 E-value=0.00062 Score=67.30 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=31.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+|+++|++||||||+|..++..++ ..+||.|.+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence 45899999999999999999999987 578888875
No 144
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.51 E-value=0.0013 Score=60.72 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.+|-++|.|||||||+|+.+.+ .. +.+++.|.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHH
Confidence 56899999999999999999988 44 67888887644
No 145
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=0.00016 Score=62.53 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+|+++|++||||||+++.+++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998865
No 146
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.47 E-value=0.001 Score=61.58 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+..|.++|.+||||||+++.+.+.+. +.+++.|.+..++
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l 44 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREI 44 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHH
Confidence 56899999999999999999998765 5678888775555
No 147
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.46 E-value=0.00061 Score=62.67 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+|.++|.+||||||+++.+.. .. ..+++.|.+-.++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHH
Confidence 478999999999999998865 33 6788889765444
No 148
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.45 E-value=0.0013 Score=61.06 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=31.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+.+|.++|.+||||||+++.+.. +. +.+++.|.+..++
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~ 42 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKEL 42 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHH
Confidence 356788999999999999999986 33 6788888664444
No 149
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00079 Score=62.52 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=34.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
.+.+|-+.|.+||||||+|+++...++....++|+.|..-
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YY 46 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYY 46 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccc
Confidence 4688999999999999999999999986556788888753
No 150
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.43 E-value=0.0005 Score=65.34 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=31.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
.+|-++|..||||||+++.|.+.+. +.+|+.|.+-.++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l~ 40 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVRELQ 40 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHHH
Confidence 4788999999999999999997654 67899998754443
No 151
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.40 E-value=0.00017 Score=54.75 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~l 298 (403)
+|+++|.|||||||+++.+.+.+....+.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4788999999999999999998522235555
No 152
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.34 E-value=0.0029 Score=57.15 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=61.6
Q ss_pred EccCCCChhHHHHHHHHhCCCccEE-Eecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHHHHHHHH
Q 015668 272 VGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDVLLSRA 340 (403)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~v-~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~~ll~~a 340 (403)
-|+.||||||.++.+.+.+....+. ++.. +.+|+-+. .. ....+....+.-.+. ..+...+..+
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~-~~----~~~~~~~~~~l~~a~r~~~~~~~I~~~ 76 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR-SE----SELSPEAEALLFAADRAWHLARVIRPA 76 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH-TS----STCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh-cc----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999887755432 2211 12344332 11 111221111111111 1233455667
Q ss_pred hcCCCeEEEeCCCCCHHHH--------HHHHHHHhc-C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-F---RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-~---~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+.+|..||+|--..+--+. ..++..+.. . .+=.+++++.+ ++..+|...|..
T Consensus 77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 7899999999621111100 112222221 1 23345677775 899999999986
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.00046 Score=57.98 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=28.2
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
|++.|+||+||||+|+.+++.+.. .++.++...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-PFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-EEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-ccccccccccc
Confidence 689999999999999999999863 35667665544
No 154
>PLN02348 phosphoribulokinase
Probab=97.28 E-value=0.00058 Score=68.80 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=33.3
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCC-----------------ccEEEeccHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE-----------------KRYILLGTNLI 303 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~-----------------~~~v~ls~D~i 303 (403)
+...+.+|-+.|.+||||||+|++|.+.+.. ....+|+.|+.
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 3356789999999999999999999988752 13567888864
No 155
>PRK05439 pantothenate kinase; Provisional
Probab=97.25 E-value=0.0016 Score=63.97 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=33.1
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEeccHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGTNLI 303 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~D~i 303 (403)
....+-+|.+.|.|||||||+|+.|...+.. ....+|+.|.+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3456889999999999999999999875532 24678888865
No 156
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.23 E-value=0.0018 Score=60.58 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
.+|.+.|++||||||+++.+++.++ +.+++++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~ 37 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMY 37 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHH
Confidence 4788999999999999999999886 5667776543
No 157
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0022 Score=57.31 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=56.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHH---HHHHHHHHHHHHHHHHhcCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC---LMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~~~ll~~al~~g 344 (403)
.|+++|.||.||||++++|. .+. +.+++..++..+.. .... +...++. -.+.+ +..++..+ ..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg---~~~i~l~el~~e~~---~~~~--~de~r~s~~vD~d~~----~~~le~~~-~~ 67 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG---YKVIELNELAKENG---LYTE--YDELRKSVIVDVDKL----RKRLEELL-RE 67 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC---CceeeHHHHHHhcC---Ceec--cCCccceEEeeHHHH----HHHHHHHh-cc
Confidence 58899999999999999999 665 44443344444432 2111 1111111 11121 12332222 56
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~ 391 (403)
.+.|+|. |+. .++. ..=.+|++.+ |+.+.+|++.|-
T Consensus 68 ~~~Ivd~-H~~--------hl~~--~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 68 GSGIVDS-HLS--------HLLP--DCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred CCeEeec-hhh--------hcCC--CCCEEEEEcCCHHHHHHHHHHcC
Confidence 7899995 331 1122 1234567777 589999999995
No 158
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.13 E-value=0.001 Score=59.38 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=28.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i 303 (403)
+++++|+|||||||++..++..+. ...+.+++.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 688999999999999998876643 234677888843
No 159
>PRK13976 thymidylate kinase; Provisional
Probab=97.10 E-value=0.0055 Score=56.93 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=64.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCc-c--EEEecc--------HHHHHHhhcCCCcccCCChHHHHH---HHHHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEK-R--YILLGT--------NLILEQMKVPGLLRKHNYSERFQC---LMGRANAIF 333 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~-~--~v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~ 333 (403)
+|++-|+-||||||.++.|.+.+... + -+++.. ..+|+.+. +. . ...+.-+. +..++. .+
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~--~~--~-~~~~~~~~llf~a~R~~-~~ 75 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLL--SL--K-NLDKISELLLFIAMRRE-HF 75 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHc--CC--c-CCCHHHHHHHHHHHHHH-HH
Confidence 68899999999999999998877642 1 122221 23444432 11 0 01111111 111221 23
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhcC----CcEEEEEECCh-HHHHHHHHHh
Q 015668 334 DVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNF----RKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~----~~~~vv~l~~p-e~~~~R~~~R 390 (403)
...+.-++.+|..||.|--..+--+. ..|+..+... .+=.+++++.| ++.++|..+|
T Consensus 76 ~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 76 VKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 34566678899999999733221111 1233333321 24466788887 8888887544
No 160
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0014 Score=57.94 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCcc-E----EEeccHHHHHHhhcCCCccc-CCChHHHHHHHHHHH----HH--
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR-Y----ILLGTNLILEQMKVPGLLRK-HNYSERFQCLMGRAN----AI-- 332 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~-~----v~ls~D~ir~~l~~~g~~~~-~~~~~~~~~~~~~a~----~~-- 332 (403)
...+|+++|++||||-|+.......+.... . .+|+.+. ..|..+. ......|.....+-. +.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa------~ag~EdH~avs~~eF~~~a~~g~FAlsWqAh 77 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPA------DAGGEDHDALSEAEFNTRAGQGAFALSWQAH 77 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccC------CCCcccccccCHHHHHHHhhcCceeEEehhc
Confidence 358999999999999999777766665431 1 2232221 0121000 000111211111100 00
Q ss_pred -----HHHHHHHHhcCCCeEEEeCC-CCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhccccCccc
Q 015668 333 -----FDVLLSRASRTPRNFIIDQT-NVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEQ 398 (403)
Q Consensus 333 -----~~~ll~~al~~g~~vIlD~T-n~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~~~~g~~V 398 (403)
+-.-++.-+.+|..||++.+ -+.+..|++ |....+|++.. |+.+.+|+.+|-++--.+|
T Consensus 78 GL~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrr-------y~~Llvv~ita~p~VLaqRL~~RGREs~eeI 143 (192)
T COG3709 78 GLSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRR-------YPQLLVVCITASPEVLAQRLAERGRESREEI 143 (192)
T ss_pred CccccCchhHHHHHhCCCEEEEeccHhhhHHHHHh-------hhcceeEEEecCHHHHHHHHHHhccCCHHHH
Confidence 00123334688999998764 222333332 44677888877 4899999999976544443
No 161
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.0017 Score=65.62 Aligned_cols=41 Identities=39% Similarity=0.462 Sum_probs=32.8
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i 303 (403)
...|.+|||+||-||||||.+.+|+..+.. +...+++.|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~ 139 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY 139 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence 345899999999999999999888876553 34678888864
No 162
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.09 E-value=0.00039 Score=62.92 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=31.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILE 305 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~ 305 (403)
+|.++|.|||||||+|+.++..+.. ....+|+.|.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 5789999999999999999988642 2367899998654
No 163
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.09 E-value=0.0012 Score=69.55 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+.+|.++|++||||||+|+.++..++. ..+|+.|..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~--vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCC--cEEEEEcce
Confidence 35789999999999999999999988864 456666764
No 164
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.08 E-value=0.00042 Score=63.36 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+|.++|++||||||+++.+...+......+++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 5789999999999999999988754457788888754
No 165
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.08 E-value=0.0024 Score=65.02 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=31.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
..|.++|.+||||||+++.|.+ +. +.+|+.|.+-.++.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l~ 39 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREVV 39 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHHh
Confidence 4689999999999999999986 43 78899998766543
No 166
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0034 Score=58.92 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=69.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHHHH----HHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRA 340 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~----~~~~~ll~~a 340 (403)
..-.+++|.|||||+|+|..+.+.+. ..+|++ |.+|+.+. ++.. .+...+..+++-+ .+.-.+++..
T Consensus 15 ~~~~v~~G~pg~gkgt~a~~l~~~~~---~~hl~tGdllr~~ia-~~te----lg~~~~~~~~~g~lvpDeiv~~~l~~~ 86 (235)
T KOG3078|consen 15 GVRAVLLGAPGSGKGTQAPRLTKNFG---VIHISTGDLLRDEIA-SGTE----LGKEAKEAIDKGKLVPDEVVVRLLEKR 86 (235)
T ss_pred ceEEEEEeCCCCCCCccCHHHHHhcC---CccchhHHHHHHHHh-ccCc----HHHHHHHHHHhcCcCcHHHHHHHHHhh
Confidence 45567899999999999999999987 566776 44566543 4421 1222233333311 1122244444
Q ss_pred hcCC---CeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 341 SRTP---RNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 341 l~~g---~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+... +.+|+|.---+...... +.+.+ .-.++.+..| +.+.+|+..|-
T Consensus 87 l~~~~~~~~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ 139 (235)
T KOG3078|consen 87 LENPRCQKGFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDRITGRR 139 (235)
T ss_pred ccccccccccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHHHhccc
Confidence 4444 78999984333221221 33333 4467789998 78999999883
No 167
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.06 E-value=0.001 Score=62.30 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc----cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR----KHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~----~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
+..++++|.||+||||+|+.+.. ..++++.|.....+. |... .......|+...+... .++..+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~~~~l~--g~~~~~v~~~d~~~~~~~~~d~l~-----~~~~~~ 79 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMSSKVLI--GDENVDIADHDDMPPIQAMVEFYV-----MQNIQA 79 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC-----CCEEEeccccchhcc--CCCCCceeecCCCCCHHHHHHHHH-----HHHhcc
Confidence 57799999999999999999842 257888887544432 2110 0011223444444432 222334
Q ss_pred cCCCeEEEeC
Q 015668 342 RTPRNFIIDQ 351 (403)
Q Consensus 342 ~~g~~vIlD~ 351 (403)
..=++||||.
T Consensus 80 ~~ydtVVIDs 89 (220)
T TIGR01618 80 VKYDNIVIDN 89 (220)
T ss_pred ccCCEEEEec
Confidence 5566888886
No 168
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.05 E-value=0.0051 Score=55.81 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=30.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
+|-++|..||||||+++.+.+ +. +.+++.|.+-.++.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l~ 38 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHELY 38 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHCT
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHHh
Confidence 688999999999999999987 44 88999997655554
No 169
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.05 E-value=0.0025 Score=65.38 Aligned_cols=41 Identities=37% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL 304 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir 304 (403)
..+.+++++|+|||||||.+.+++..+. ++.+.+++.|..|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3479999999999999999988877642 3457889999543
No 170
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=97.04 E-value=0.00028 Score=72.92 Aligned_cols=52 Identities=31% Similarity=0.468 Sum_probs=41.6
Q ss_pred eEec-CCceeeCCC-cccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccccc
Q 015668 137 GFGG-TGKFSHGGN-FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ 191 (403)
Q Consensus 137 gy~~-~G~~~~~~~-~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~ 191 (403)
+|++ +|..+..+. ...||+.|++||+|||.+|... +.-+|++||..+|++|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~---~~~~~~~~~~~~gi~f~ 55 (469)
T KOG1477|consen 2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTIN---GSDFFTKNGPDMGIAFY 55 (469)
T ss_pred CCcccchhhhhhcccccccCCcCCccccccceEeccC---CceeEEEEcCCcceeee
Confidence 4433 444443332 3589999999999999999998 79999999999999986
No 171
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.04 E-value=0.0023 Score=57.53 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=26.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+|+++|.|||||||+|.+++..++. .++.|.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcC
Confidence 6899999999999999999988643 3556655
No 172
>PRK10867 signal recognition particle protein; Provisional
Probab=97.04 E-value=0.002 Score=66.25 Aligned_cols=41 Identities=39% Similarity=0.484 Sum_probs=31.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL 304 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir 304 (403)
..+.+|+|+|+|||||||++.+++..+. .+.+.+++.|..|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3479999999999999998888876442 2347788889543
No 173
>PTZ00301 uridine kinase; Provisional
Probab=97.03 E-value=0.00067 Score=63.09 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i 303 (403)
|.+|.+.|.|||||||+|+++.+.+. .....+++.|..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 67899999999999999998876542 122457788864
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0046 Score=56.85 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
|.+|+|+|++|+||||-+.+|+..+. .+....++.|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 57999999999999999888875432 34567788885
No 175
>PRK14974 cell division protein FtsY; Provisional
Probab=96.96 E-value=0.0022 Score=63.84 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=29.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i 303 (403)
.+.+|+++|+||+||||.+.+++..+.. ....+++.|..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4789999999999999987777655432 23566888843
No 176
>PRK07429 phosphoribulokinase; Provisional
Probab=96.96 E-value=0.0061 Score=60.51 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=31.9
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+.+|-++|.+||||||+++.++..++.....++..|.+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 3568999999999999999999998876444556666764
No 177
>PRK09087 hypothetical protein; Validated
Probab=96.94 E-value=0.0029 Score=59.47 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=62.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc---CCC--cccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV---PGL--LRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~---~g~--~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
..++++|.+||||||+++.+++... ...++.+.+..++.. .+. .++-.... .. +..+..++..+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~------~~~lf~l~n~~~ 114 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FD------ETGLFHLINSVR 114 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHcchHHHHhhhcCeEEEECCCCCC-CC------HHHHHHHHHHHH
Confidence 4578999999999999999988764 456666432221110 010 01100000 00 112444666666
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhccccCccccccc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEQIMFC 402 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~p--e~~~~R~~~R~~~~g~~Vp~~~ 402 (403)
.+|+.+|+-++...+.... ....++. ...-.++-++.| ++..+-.+++....+-.+++++
T Consensus 115 ~~g~~ilits~~~p~~~~~-~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev 177 (226)
T PRK09087 115 QAGTSLLMTSRLWPSSWNV-KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHV 177 (226)
T ss_pred hCCCeEEEECCCChHHhcc-ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7888888877644332111 1111221 111245566665 3343334433333455566543
No 178
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.93 E-value=0.00086 Score=61.28 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCcc------EEEeccHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKR------YILLGTNL 302 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~------~v~ls~D~ 302 (403)
||.++|+|||||||+|++|...+.... ..+++.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 688999999999999999999887432 45666664
No 179
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.92 E-value=0.0026 Score=56.24 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=17.9
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999999988
No 180
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0031 Score=62.05 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=72.9
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHHHHhhc-CCCcccCCCh-HHHHHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir~~l~~-~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~ 339 (403)
.....|++.||+|+||||+.-.|.+.+...+ ...+..|.||.-|.. -| |+ .+.++.+.++.+ ....
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlg------fs~edreenirriae----vakl 117 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLG------FSPEDREENIRRIAE----VAKL 117 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccC------CCchhHHHHHHHHHH----HHHH
Confidence 3456789999999999999877766554211 345777888876632 12 22 233444444332 2223
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHh
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R 390 (403)
....|-..|-.....+...|... +.+-+ .+ ++.-|++++| +.|.+|..+.
T Consensus 118 fadaglvcitsfispf~~dr~~a-rkihe~~~l~f~ev~v~a~l~vceqrd~k~ 170 (627)
T KOG4238|consen 118 FADAGLVCITSFISPFAKDRENA-RKIHESAGLPFFEVFVDAPLNVCEQRDVKG 170 (627)
T ss_pred HhcCCceeeehhcChhhhhhhhh-hhhhcccCCceEEEEecCchhhhhhcChHH
Confidence 35778777777777777777542 22222 23 6777899998 8999998764
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.0011 Score=55.15 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i 303 (403)
...++++|+||+||||+++.++..+... ..+.++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 3578999999999999999999988865 3677766643
No 182
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.90 E-value=0.0061 Score=62.77 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=32.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i 303 (403)
..+.+|+|+|+||+||||.+.+++..+.. ....+++.|..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35899999999999999999999876643 24677888854
No 183
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0096 Score=55.84 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.||+||||+|..++..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999875
No 184
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.017 Score=53.69 Aligned_cols=126 Identities=19% Similarity=0.134 Sum_probs=70.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE-EEecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVL 336 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~-v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~l 336 (403)
..+|.+-|+=||||||.++.+.+.+...++ +++.. ..+|+.+. .+...........-.+.+++ +.+.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll-~~~~~~~~~~e~lLfaadR~-~h~~~~ 80 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLL-NGEEKLSPKAEALLFAADRA-QHLEEV 80 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc-CCccCCCHHHHHHHHHHHHH-HHHHHH
Confidence 468999999999999999999887765432 22221 13444432 22100001111111111222 124456
Q ss_pred HHHHhcCCCeEEEeCCCCCHH-HH-------HHHHHHHhcC-----CcEEEEEECCh-HHHHHHHHHhccc
Q 015668 337 LSRASRTPRNFIIDQTNVFKS-AR-------KRKLRLFVNF-----RKIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~-~R-------~~~~~~~~~~-----~~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
+.-++.+|+.||.|--..+.- ++ ..++..+.++ .+-..++++.| ++.++|..+|...
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 667789999999996322221 12 1233322222 13456788886 8999999998643
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.86 E-value=0.015 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...+++.|.||+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999876
No 186
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.84 E-value=0.0026 Score=65.20 Aligned_cols=41 Identities=29% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir 304 (403)
..+.+|+|+|++||||||.+.+|+..+.. +...+++.|..|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 44799999999999999999999865532 346788888644
No 187
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.84 E-value=0.0022 Score=67.09 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
.+.+|.+.|++||||||+|+.+++.++ +.++++|.+...
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehH
Confidence 357899999999999999999999996 788988765443
No 188
>PF13173 AAA_14: AAA domain
Probab=96.81 E-value=0.0092 Score=50.63 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=55.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
.++++.|+.++||||+++++++.+. .+.++.++.|+.+..-. . ..+ ....+++.......
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~--------------~-~~~----~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL--------------A-DPD----LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH--------------h-hhh----hHHHHHHhhccCCc
Confidence 6889999999999999999998764 23467776665433100 0 000 11112222223566
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 015668 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP 380 (403)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p 380 (403)
.++||-....+.... .++.+.+.. ...+++.-+.
T Consensus 64 ~i~iDEiq~~~~~~~-~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 64 YIFIDEIQYLPDWED-ALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred EEEEehhhhhccHHH-HHHHHHHhccCceEEEEccc
Confidence 889998777665444 455555544 4555555443
No 189
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.80 E-value=0.0068 Score=58.54 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=56.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+++|+++|++||||||-.+.|. ++. |..+ |.+=- .-....++.+.+ - .....+-
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lE-D~G---y~cv--DNlP~--------------~Ll~~l~~~~~~----~--~~~~~~~ 54 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALE-DLG---YYCV--DNLPP--------------SLLPQLIELLAQ----S--NSKIEKV 54 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHH-hcC---eeEE--cCCcH--------------HHHHHHHHHHHh----c--CCCCceE
Confidence 4789999999999999777764 443 6666 43110 001111111110 0 0012455
Q ss_pred eEEEeCCCCCH-HHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668 346 NFIIDQTNVFK-SARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 346 ~vIlD~Tn~~~-~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~ 389 (403)
-+++|.-+..- ..-...+..+.+.+ .+.++|+++. +++++|-++
T Consensus 55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e 101 (284)
T PF03668_consen 55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE 101 (284)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence 78889855422 22223344444445 8899999997 788888765
No 190
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.012 Score=58.82 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
=+-|+|+|+||+|||-+|+.++.+..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 46789999999999999999998876
No 191
>CHL00181 cbbX CbbX; Provisional
Probab=96.73 E-value=0.016 Score=56.56 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=28.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~ir~ 305 (403)
..-+++.|+||+||||+|+.+++.+. ...++.++.+.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 34578899999999999999977542 12366777666544
No 192
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.72 E-value=0.0055 Score=62.50 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
..+..|+++|.+||||||+++.|++.++...+..++.+.+.+++.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~ 261 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG 261 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence 457889999999999999999999986643345577776666543
No 193
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.72 E-value=0.0092 Score=57.16 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-+++.|+||+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999998753
No 194
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.72 E-value=0.021 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..+||.+-|.-|||||++|++|++++.-
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf 97 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGF 97 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCC
Confidence 4689999999999999999999999873
No 195
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0035 Score=57.25 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=30.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
-+|-+.|...|||||+|+.+.+-++. ..+|+.|++.
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFy 40 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFY 40 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccC--Ceeecccccc
Confidence 46677899999999999999999986 4578888754
No 196
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.66 E-value=0.025 Score=51.82 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|-++|--||||||.++.+.+ +. .-+|+.|.+-.++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~-~G---~~vIDaD~vaR~v 38 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA-LG---IPVIDADVVAREV 38 (225)
T ss_pred eEEEeecccccChHHHHHHHHH-cC---CcEecHHHHHHHH
Confidence 4778899999999999999984 33 6788888764444
No 197
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.0022 Score=63.43 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i 303 (403)
..+.+|+++|+|||||||.+.+++..+.. +...+++.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 45799999999999999999999876542 34677877853
No 198
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.58 E-value=0.042 Score=52.32 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..+++++|.||+||||+++.+...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 458899999999999999999988763
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.56 E-value=0.0098 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
+..+++++|.||+|||++++++.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 200
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.53 E-value=0.014 Score=62.31 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l 307 (403)
.++|+|.+|+|||++++.++.+. +...++.++.+++..++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 37899999999999999887754 23456788887765444
No 201
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.053 Score=48.33 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=62.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHH--------HHHhhc-CCCcccCCCh-HHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI--------LEQMKV-PGLLRKHNYS-ERFQCLMGRANAIF 333 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~i--------r~~l~~-~g~~~~~~~~-~~~~~~~~~a~~~~ 333 (403)
..+++.++|++||||||+.+.++..++. .+-+.++...+ +..+.. +.. ...+. ..++.+...-++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~--~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD--PFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC--chhccchHHHHhhCHHHHHH
Confidence 3578999999999999999999876542 23444543221 221111 110 00011 11111111111111
Q ss_pred HHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 015668 334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL 383 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-pe~~ 383 (403)
-.+....+.+.+.+|+|- ..+....+..+++.+.+.. ...++++.. ++++
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 122233357888999998 5677778887777777654 445555443 3444
No 202
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.50 E-value=0.011 Score=55.27 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D~ir~ 305 (403)
...++++|.||+||||+|+.++.+. ....++.++......
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 4678999999999999999998764 222367776665433
No 203
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.49 E-value=0.0029 Score=61.74 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL 302 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ 302 (403)
.+.+.+|.++|.+||||||+|+.+..-+. .....+++.|.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 35688999999999999999987755442 22366788885
No 204
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.0071 Score=58.49 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
..+.+|+++|+||+||||.+.+++..+.. +...+++.|.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 45799999999999999999888765543 2466788784
No 205
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.46 E-value=0.012 Score=55.65 Aligned_cols=36 Identities=3% Similarity=0.006 Sum_probs=25.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
..++++|+||+||||+++.++.+.. ......++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4688999999999999988776432 12244555554
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.012 Score=56.55 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.-|++.|.||+|||++|+.+++.+.. .++.++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~-~~~~i~ 53 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDR-PVMLIN 53 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence 45678999999999999999987643 355554
No 207
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.46 E-value=0.0023 Score=62.96 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=30.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
+.+|+++|++||||||+|..|++.++ ..+||.|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLN---GEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccc
Confidence 57999999999999999999999986 56788887
No 208
>PHA03132 thymidine kinase; Provisional
Probab=96.44 E-value=0.029 Score=59.43 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..+|.+-|.-||||||+++.|.+.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6788899999999999999999887
No 209
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.42 E-value=0.032 Score=57.76 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=29.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~l 307 (403)
.-+++.|.||+|||++++.++.++. ...++.++.+.+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 3478999999999999998887642 3346677777655443
No 210
>PF13245 AAA_19: Part of AAA domain
Probab=96.38 E-value=0.0056 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=17.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..++++.|+|||||||.+.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457788999999999665554433
No 211
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.36 E-value=0.021 Score=58.28 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=29.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQ 306 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~ 306 (403)
..+++.|.||+|||++++.++.++. ...++.++.+.+..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 4578899999999999998876542 234677777765443
No 212
>PRK06620 hypothetical protein; Validated
Probab=96.35 E-value=0.0075 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..++++|+||+||||+++.+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999887654
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.33 E-value=0.0025 Score=63.67 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..++++|+|+|||||||+|+.|++.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3588999999999999999999988763
No 214
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.29 E-value=0.067 Score=51.15 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..+++++.|.||+||||++.+++.... ....+.++.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 357999999999999999988865531 2345667764
No 215
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.28 E-value=0.029 Score=48.34 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D 301 (403)
+++++|.||+||||++..++..... ...+.++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4688999999999999999776542 235555554
No 216
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.067 Score=47.77 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHH-------HHHHhhc-CCCcccCCChHHHHHH-HHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL-------ILEQMKV-PGLLRKHNYSERFQCL-MGRANAIFD 334 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~-------ir~~l~~-~g~~~~~~~~~~~~~~-~~~a~~~~~ 334 (403)
..+++.++|.+||||||+.+.++..++ ..+-+.++... ++..+.. +............+.+ ...-++..-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 358899999999999999999987654 23334443221 1111110 1100000000111211 000011111
Q ss_pred HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668 335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p 380 (403)
.+....+.+-+.+|+|- +++....|+.+++.+.++. ...++++...
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 22233357888999998 6677788888888777653 2455555444
No 217
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.26 E-value=0.0075 Score=55.84 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=58.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH--HHHhhc-CCCcccC-------CChHHH---HHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI--LEQMKV-PGLLRKH-------NYSERF---QCLMGRANAI 332 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i--r~~l~~-~g~~~~~-------~~~~~~---~~~~~~a~~~ 332 (403)
+.|++++|++|+|||.+|-.+++.++ +-+|+.|.+ -.++.+ +|..... .|-... +-.+ .+.+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i-~a~ea 76 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTG---APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGII-NAEEA 76 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhC---CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCc-CHHHH
Confidence 36899999999999999999999987 667777853 233322 3321100 010000 0000 11122
Q ss_pred HHHHHHHH--hcCCCeEEEeCCCCCHHHHHHHHHHHhc--C---C-cEEEEEECCh--HHHHHHHHHhcc
Q 015668 333 FDVLLSRA--SRTPRNFIIDQTNVFKSARKRKLRLFVN--F---R-KIAVVVFPKP--EDLKIRSVKRFK 392 (403)
Q Consensus 333 ~~~ll~~a--l~~g~~vIlD~Tn~~~~~R~~~~~~~~~--~---~-~~~vv~l~~p--e~~~~R~~~R~~ 392 (403)
...++... ...+..+|+....++ ++..+.+ | . +..+..+..+ +..+.|..+|.+
T Consensus 77 ~~~Li~~v~~~~~~~~~IlEGGSIS------Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 77 HERLISEVNSYSAHGGLILEGGSIS------LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHHHTTTTSSEEEEEE--HH------HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCceEEeCchHH------HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 22333332 234889999998775 3333332 1 1 4556566554 678888888863
No 218
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.25 E-value=0.047 Score=56.49 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=29.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l 307 (403)
-++++|.||+|||++++.++.++ +...++.++.+++..++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 48999999999999999887653 33346777777655444
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.25 E-value=0.049 Score=48.61 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=62.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccH--------HHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN--------LILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFD 334 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D--------~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~ 334 (403)
..+++.++|.+||||||+.+.++..++. .+.+.++.. .++..+....... ..+. ...+.+...-++..-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~-~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD-ELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC-ccccCcHHHHCcCHHHHHHH
Confidence 3579999999999999999999876542 234444331 1222221100000 0011 111111000111111
Q ss_pred HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECC-hHHH
Q 015668 335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPK-PEDL 383 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~-pe~~ 383 (403)
.+....+.+.+.+|+|- +.+.+..|+.+++.+.+.. ...++++.. .+++
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 22233457888999998 5778888887777776542 345555544 3433
No 220
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.23 E-value=0.0031 Score=61.31 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
+|+++|++|||||++|..+++.++ ..+||.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN---AEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC---CcEEEech
Confidence 578999999999999999999987 46788886
No 221
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.029 Score=49.72 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEK 293 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~ 293 (403)
.=|+++|.||+||||++.+++..+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 447889999999999999998776643
No 222
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.22 E-value=0.038 Score=53.76 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=26.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLILE 305 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~ir~ 305 (403)
-+++.|+||+||||+|+.+++.+. ...++.++.+++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence 478899999999999976665432 11367777666544
No 223
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.03 Score=58.39 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3356789999999999999999998765
No 224
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.17 E-value=0.023 Score=53.16 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..=+++.|+||.||||+|+-+++++.. .+..+|
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~-~~~~~s 82 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGV-NFKITS 82 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT---EEEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCC-CeEecc
Confidence 456889999999999999999999874 244443
No 225
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.13 E-value=0.005 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.0
Q ss_pred EEEEccCCCChhHHHHHHHHhCCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~ 292 (403)
|+|+|.||+|||++|+.+++.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998854
No 226
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.031 Score=54.98 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILE 305 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~ 305 (403)
...|-+|+++|.+|+||||-..+|+..+.. +..++.-.|.+|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 345999999999999999988887765543 3466667787653
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.017 Score=54.46 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=28.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir 304 (403)
..++++|.+|+|||++++.++.+.. ....+.++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 5678999999999999998875432 2346778777654
No 228
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.08 E-value=0.011 Score=53.67 Aligned_cols=126 Identities=17% Similarity=0.054 Sum_probs=64.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCC-cccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~-~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
...++++|++||||||+.+.++...+. .+.+.+ ++.. ++..... .....+......... ...+.+++..+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i--ed~~-E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~lR~ 99 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITI--EDTA-ELQLPHPNWVRLVTRPGNVEGSG--EVTMADLLRSALRM 99 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE--CCcc-ccCCCCCCEEEEEEecCCCCCCC--ccCHHHHHHHHhcc
Confidence 578999999999999999999887663 234444 2111 1111100 000000000000000 00122344455565
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhccccCcc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEMGKE 397 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~~~~g~~ 397 (403)
.-++|+=.---.++... .++.+..-+ -+.-+...++...++|........+..
T Consensus 100 ~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~ 154 (186)
T cd01130 100 RPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLG 154 (186)
T ss_pred CCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhhcCcc
Confidence 55555554334455443 454433212 234456666788899999887665554
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=96.07 E-value=0.022 Score=53.47 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..++++|+||+|||++++.++.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998764
No 230
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.05 E-value=0.1 Score=47.03 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=57.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------------HHHHHhhcCCC-cccCCChHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------------LILEQMKVPGL-LRKHNYSERFQCLMGR 328 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------------~ir~~l~~~g~-~~~~~~~~~~~~~~~~ 328 (403)
..+++.++|++||||||+.+.+..... -+.++.. .+.+.+.+... .......-... ..++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G---~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgG-q~qr 95 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASG---KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGG-ELQR 95 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCC---cEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHH-HHHH
Confidence 468999999999999999998863211 1222211 12222221111 11100000000 0111
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HH
Q 015668 329 ANAIFDVLLSRASRT--PRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-ED 382 (403)
Q Consensus 329 a~~~~~~ll~~al~~--g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~ 382 (403)
+ .+....+.+ -..+|+|- .++.+..++.+++.+.+.. ...++++.-. ++
T Consensus 96 l-----~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 96 V-----KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred H-----HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 1 122223466 78999998 6778888887777776542 4556555544 44
No 231
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.021 Score=57.11 Aligned_cols=101 Identities=22% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHH----HHhhcCCCc-ccCCChHHH--HHHHHHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL----EQMKVPGLL-RKHNYSERF--QCLMGRANAI 332 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir----~~l~~~g~~-~~~~~~~~~--~~~~~~a~~~ 332 (403)
....+.|||++||.||||||...+++..+..++ ...+..|.+| ++|...+.- +-..|.. + -.....|
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs-yte~dpv~ia--- 172 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS-YTEADPVKIA--- 172 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec-ccccchHHHH---
Confidence 445689999999999999998888877766544 4567778654 333322210 0011110 0 0112222
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHh
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV 367 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~ 367 (403)
.+-++++-+.+..+||=+|.-.-..-..+++...
T Consensus 173 -~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~ 206 (483)
T KOG0780|consen 173 -SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK 206 (483)
T ss_pred -HHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH
Confidence 2345556677876666556544333344555544
No 232
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.035 Score=56.02 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=30.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL 304 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir 304 (403)
...+++|+|++|+||||.+.+|+..+ ..+...++..|..|
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 45799999999999999999998653 11345677777653
No 233
>PRK08727 hypothetical protein; Validated
Probab=95.99 E-value=0.054 Score=51.03 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=25.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
..++++|.+|+|||++++.++.+... ...+.++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 45999999999999999998654332 2345666554
No 234
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.98 E-value=0.088 Score=51.56 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
-+.+++++|+||+||||+|+.+++++.. .+..++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~-~~~~i~ 75 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGA-EVLFVN 75 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCc-cceEec
Confidence 4678888999999999999999987642 244443
No 235
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.12 Score=46.89 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=61.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccHH----HHHHhhc-CCCcccCCChHHHHHHH-H----HH--
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL----ILEQMKV-PGLLRKHNYSERFQCLM-G----RA-- 329 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D~----ir~~l~~-~g~~~~~~~~~~~~~~~-~----~a-- 329 (403)
..+++.++|.+||||||+.+.++-.. +..+-+.++... ++..+.. +-...........+.+. . ..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSg 111 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSV 111 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCH
Confidence 35899999999999999999998532 233445554322 2222211 10000000001111111 0 00
Q ss_pred HHHHH-HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEEC-ChH
Q 015668 330 NAIFD-VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP-KPE 381 (403)
Q Consensus 330 ~~~~~-~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~pe 381 (403)
.+..+ .+....+.+...+|+|- +.+....++.+++.+.+.. ...++++. .++
T Consensus 112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 01111 22233457788999998 6677888888777777642 34555543 344
No 236
>PRK08116 hypothetical protein; Validated
Probab=95.96 E-value=0.063 Score=51.80 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l 307 (403)
..-+++.|.||+|||++|..+++++. ...++.++..++...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 34688999999999999999988653 2346677776665554
No 237
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.11 Score=46.66 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=62.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHH-------HHHhhcCCCcccCCCh-HHHHHHHHHH---HHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI-------LEQMKVPGLLRKHNYS-ERFQCLMGRA---NAI 332 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~i-------r~~l~~~g~~~~~~~~-~~~~~~~~~a---~~~ 332 (403)
..+++.++|.+||||||+.+.++...+. .+-+.++...+ +..+....... .-+. ...+.+.... ++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRP-YLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCC-eeecccHHHhhcccCCHHHHH
Confidence 3578999999999999999999876542 23455543211 22211100000 0011 1111111000 011
Q ss_pred HHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 015668 333 FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL 383 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-pe~~ 383 (403)
.-.+....+.+.+.+|+|- ..+....++.+++.+.+.. ...++++.. ++++
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 1112233357888999998 5677777887777776643 445555544 4544
No 238
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.92 E-value=0.0053 Score=58.22 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEccCCCChhHHHHHHHHhCCCc--cEEEeccH
Q 015668 271 MVGLPASGKTTWAEKWVKDHPEK--RYILLGTN 301 (403)
Q Consensus 271 l~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D 301 (403)
++|+|||||||+.+.+.+-+... ...+||.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 48999999999999998766532 46778877
No 239
>PRK15453 phosphoribulokinase; Provisional
Probab=95.92 E-value=0.0065 Score=58.80 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i 303 (403)
.-+|.++|.|||||||+|+.+++.+... ...+|+.|..
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y 44 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF 44 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 4689999999999999999998766422 3577888864
No 240
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.92 E-value=0.078 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=26.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCc----cEEEeccHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEK----RYILLGTNL 302 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~----~~v~ls~D~ 302 (403)
.+++.|+||+||||+|+.+++++... .++.++..+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 47899999999999999998876422 245665543
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.92 E-value=0.028 Score=52.08 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=29.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i 303 (403)
....++++|.||+||||+|+.++.+.. ...++.++.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 357899999999999999999986643 223666765554
No 242
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.086 Score=51.74 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=68.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH--HHHhhc----------CCCccc--CCChHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI--LEQMKV----------PGLLRK--HNYSERFQCLMGRANA 331 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i--r~~l~~----------~g~~~~--~~~~~~~~~~~~~a~~ 331 (403)
-+||++.|..|||||-+|-.|+..++ ..+||.|.+ -+.+.+ .|.+-. ....+..+....+-..
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 57999999999999999999999998 578888852 111110 010000 0011111111112122
Q ss_pred HHHHHHHHHhcCCC-eEEEeCCCCCHHHHHHHHHH--------Hhc--------C-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 332 IFDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRL--------FVN--------F-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 332 ~~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~--------~~~--------~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.....++...++|+ ++|+=.||.+-.+ ++.. +.. + ..-++++++++ ..+-+|+.+|.
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV 159 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRV 159 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence 22234444445555 6666779987532 2211 111 0 13577899987 78999999986
No 243
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.90 E-value=0.057 Score=50.68 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEEccCCCChhHHHHHH---HHhCCCccEEEeccH
Q 015668 269 MMMVGLPASGKTTWAEKW---VKDHPEKRYILLGTN 301 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l---~~~~~~~~~v~ls~D 301 (403)
.+++|+|||||||+..-. ..... ..+.++|.|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD 39 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD 39 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhC-CceEEEecC
Confidence 357899999999996444 34433 235667776
No 244
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.89 E-value=0.037 Score=52.19 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
..++++.|.||||||++|.+++.+. ..+..+.++.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6899999999999999999876542 23345666655
No 245
>PRK12377 putative replication protein; Provisional
Probab=95.89 E-value=0.053 Score=51.76 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=32.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMK 308 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~ 308 (403)
..-+++.|.||+|||++|..++..+..+ .++.++..++++.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 3578999999999999999998776432 356676676666653
No 246
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.88 E-value=0.067 Score=48.09 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=59.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH--------HHHHHhh-------cCCCccc-CCChHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------LILEQMK-------VPGLLRK-HNYSERFQCLMG 327 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D--------~ir~~l~-------~~g~~~~-~~~~~~~~~~~~ 327 (403)
..+++.++|.+||||||+.+.++...+ ..+-+.++.. .++..+. ..|.... ......... .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~--G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG--G 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH--H
Confidence 468999999999999999999987654 2333444321 1111110 0121000 000000000 0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh
Q 015668 328 RANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP 380 (403)
Q Consensus 328 ~a~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p 380 (403)
+ +..-.+....+.+...+|+|- .++....++.+++.+.+.. ...++++...
T Consensus 102 ~--~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 102 E--RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred H--HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 0 001112233457889999998 5677778887777776542 3455555443
No 247
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.87 E-value=0.041 Score=51.66 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
.++++++|.||+|||||+.+++.... ....+.++.+
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 58999999999999999888764321 2346777754
No 248
>PF05729 NACHT: NACHT domain
Probab=95.86 E-value=0.0057 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+++++.|.||+||||++++++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4789999999999999999886554
No 249
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.03 Score=49.90 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.+++++|.||+||||..+...+.+- .+.++|.-+++-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~--~~~ivNyG~~Ml 41 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELV--KHKIVNYGDLML 41 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHh--hceeeeHhHHHH
Confidence 68999999999999999988888872 155666665543
No 250
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.84 E-value=0.03 Score=53.67 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCC---c-cEEEeccHHH------HHHhhc---CCCcccCCChH-HHHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE---K-RYILLGTNLI------LEQMKV---PGLLRKHNYSE-RFQCLMG 327 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~---~-~~v~ls~D~i------r~~l~~---~g~~~~~~~~~-~~~~~~~ 327 (403)
+.+.+-+|-++|.||+||||.|+.+..-+.. . ..-.|-+|.+ .++.++ .|-+ .+|.. .+-....
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfP--eSyD~~~ll~fl~ 155 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFP--ESYDVAALLRFLS 155 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCC--ccccHHHHHHHHH
Confidence 4567899999999999999999988764432 1 2556666742 222211 1211 12221 1111111
Q ss_pred HHHH--------HHHHHHHH-------HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 328 RANA--------IFDVLLSR-------ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 328 ~a~~--------~~~~ll~~-------al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.++. .+..++.- -...-+.+|+...|+..... .|. .+.++-.+ -+|++.+ +.+.+|..+|-
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~-~~sdffDf-SIyvDa~~~~le~wyi~Rf 232 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWL-FLSDFFDF-SIYVDADEELLEERYIERF 232 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-ccc-cccccceE-EEEecCCHHHHHHHHHHHH
Confidence 1110 00111100 12455678888888766543 221 22333122 2599998 78999999997
Q ss_pred cccCc
Q 015668 392 KEMGK 396 (403)
Q Consensus 392 ~~~g~ 396 (403)
...|.
T Consensus 233 l~~g~ 237 (283)
T COG1072 233 LKFGL 237 (283)
T ss_pred Hhccc
Confidence 54443
No 251
>PTZ00202 tuzin; Provisional
Probab=95.83 E-value=0.12 Score=53.26 Aligned_cols=106 Identities=10% Similarity=0.152 Sum_probs=56.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc---HHHHHHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---NLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~---D~ir~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a 340 (403)
.+.+++++|.+|+||||+++.+...++. ...+++. ++++..+. .-|.... +. -..+.+++.+ .++...
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~-~qL~vNprg~eElLr~LL~ALGV~p~--~~--k~dLLrqIqe---aLl~~~ 356 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGM-PAVFVDVRGTEDTLRSVVKALGVPNV--EA--CGDLLDFISE---ACRRAK 356 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCc-eEEEECCCCHHHHHHHHHHHcCCCCc--cc--HHHHHHHHHH---HHHHHH
Confidence 4679999999999999999999987762 2233333 33322221 1232111 11 0223333332 333333
Q ss_pred hcCCCeEEE-----eCCCCCHHHHHHHHHHHhcCCcEEEEEECCh
Q 015668 341 SRTPRNFII-----DQTNVFKSARKRKLRLFVNFRKIAVVVFPKP 380 (403)
Q Consensus 341 l~~g~~vIl-----D~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p 380 (403)
..+|+.+|| +..++.+-+... +.+..+. +.+-++++.|
T Consensus 357 ~e~GrtPVLII~lreg~~l~rvyne~-v~la~dr-r~ch~v~evp 399 (550)
T PTZ00202 357 KMNGETPLLVLKLREGSSLQRVYNEV-VALACDR-RLCHVVIEVP 399 (550)
T ss_pred HhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccc-hhheeeeeeh
Confidence 343554433 556676666553 5555553 4555555555
No 252
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.83 E-value=0.046 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.+.|+++|.||+||||+++.|++.+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 468899999999999999999988653
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.83 E-value=0.16 Score=44.03 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=58.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
..+++.++|.+||||||+.+.++..++. .+-+.++.. ..+ +-..+.+ ... .+++ .+....+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i---~~~~~lS-~G~----~~rv-----~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKI---GYFEQLS-GGE----KMRL-----ALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEE---EEEccCC-HHH----HHHH-----HHHHHHhcC
Confidence 3588999999999999999999876642 233444221 001 1000111 011 1111 122233578
Q ss_pred CCeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHH
Q 015668 344 PRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDL 383 (403)
Q Consensus 344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~ 383 (403)
-..+|+|. .++....+..+.+.+++.. ..++++.. ++++
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~~-~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEYP-GTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHH
Confidence 88999998 6677888888777777653 34444433 3443
No 254
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.11 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456889999999999999999999876
No 255
>PLN02840 tRNA dimethylallyltransferase
Probab=95.83 E-value=0.0093 Score=60.88 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=29.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
...+|+++|++||||||+|..|++.++. .+|+.|.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~---~iis~Ds 54 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNG---EIISADS 54 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCC---CeEeccc
Confidence 3568999999999999999999999873 4666664
No 256
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.031 Score=56.73 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=31.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir 304 (403)
.+.+|+++|++|+||||.+.+|+..+.. +...+++.|..|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3689999999999999999999865542 236678887543
No 257
>PLN02748 tRNA dimethylallyltransferase
Probab=95.82 E-value=0.011 Score=61.26 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
....+|+++|++||||||+|..|+..++ ..+||.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCch
Confidence 3457899999999999999999999987 67899995
No 258
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.81 E-value=0.056 Score=47.34 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=32.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV 309 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~ 309 (403)
.+++++.|.||+||||+.+.|++.--. -+....+|.|+++-..
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~Gfa-tvee~~r~ii~~es~~ 51 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARAGFA-TVEEAGRDIIALESAQ 51 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCce-eeccchhhHHHHHHhc
Confidence 378999999999999999999876431 2455677877766543
No 259
>PRK13695 putative NTPase; Provisional
Probab=95.80 E-value=0.064 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-|+++|.|||||||+++.+...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999976554
No 260
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.80 E-value=0.19 Score=45.95 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=38.2
Q ss_pred HHHHHh-cCCCeEEEeC--CCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhc
Q 015668 336 LLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRF 391 (403)
Q Consensus 336 ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R~ 391 (403)
.+.+|+ .+-...|.|- .|+.+..-.++|+.|.++++ ..++.-.-+..+.++..+|.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 344443 4556666665 79999988889999999873 34433333577888877775
No 261
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.80 E-value=0.063 Score=48.54 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=62.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
..+++.++|.+||||||+.+.++.-.+ ..+.+.++... + +...+.. .+.- + .+++ .+....+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i---~~~~q~~~LSgG-q--~qrv-----~laral~~ 88 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----P---VYKPQYIDLSGG-E--LQRV-----AIAAALLR 88 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE----E---EEEcccCCCCHH-H--HHHH-----HHHHHHhc
Confidence 357999999999999999999987543 23344442210 0 1000100 0100 0 1111 12223357
Q ss_pred CCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668 343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R 390 (403)
+...+|+|- +++....++.+++.+.+.. ...++++.......++...|
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 888999998 5677778877777766542 25566665544444454444
No 262
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.80 E-value=0.0074 Score=58.41 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
+|.++|.+||||||+++.++..++.....++..|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 477899999999999999998876544566777754
No 263
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.76 E-value=0.0097 Score=51.26 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+|+|.|..||||||+++.+++.+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999999876
No 264
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.74 E-value=0.0091 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=30.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+|.+.|+|||||||+|+.+++.+. +.+++++.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchh
Confidence 36789999999999999999999986 667777764
No 265
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.71 E-value=0.01 Score=53.20 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
++++.|.||||||+||.+++.... ++.+++.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-GPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEc
Confidence 478899999999999999987744 33555544
No 266
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.075 Score=52.81 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=56.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.|+=|+|-|+||.|||-+|+..+.+... .++.+..-++.+++...| . .++ +++.+.|-.+-
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVqKYiGEG--------a---RlV-------RelF~lAreka 244 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQKYIGEG--------A---RLV-------RELFELAREKA 244 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHHHHhccc--------h---HHH-------HHHHHHHhhcC
Confidence 4788999999999999999999998864 477777777777654222 1 122 22222222222
Q ss_pred CeEEE-------------eCCCCCHHHHHHHHHHHhc
Q 015668 345 RNFII-------------DQTNVFKSARKRKLRLFVN 368 (403)
Q Consensus 345 ~~vIl-------------D~Tn~~~~~R~~~~~~~~~ 368 (403)
-++|+ +.|.-.++.++-+|+++.+
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ 281 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh
Confidence 23332 3467788888888988875
No 267
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.68 E-value=0.01 Score=55.75 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEE-eccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYIL-LGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~-ls~D~ 302 (403)
..+.+|.++|++||||||+++.++..++.. ...+ ++.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 458999999999999999999999877642 1223 55554
No 268
>PLN03025 replication factor C subunit; Provisional
Probab=95.67 E-value=0.043 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
+++.|+||+||||+|+.+++++
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999876
No 269
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.14 Score=45.93 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHH----------HHHHhhcCCCcccCCCh-HHHHHHH---HHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNL----------ILEQMKVPGLLRKHNYS-ERFQCLM---GRA 329 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~----------ir~~l~~~g~~~~~~~~-~~~~~~~---~~a 329 (403)
..+++.++|.+||||||+.+.++..++. .+-+.++... ++............... ...+.+. ..-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 3588999999999999999999876552 2334443211 11111100000000001 1111110 000
Q ss_pred HHHHHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECC-hHHH
Q 015668 330 NAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK-PEDL 383 (403)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~-pe~~ 383 (403)
++..-.++...+.+.+.+|+|- +++....+..+++.+.+.. ...++++.. ++++
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1111122233457888999998 6677888887777776542 245554443 3443
No 270
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.65 E-value=0.011 Score=53.29 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.+.++.++|.+||||||+++++...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4668999999999999999999987764
No 271
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.63 E-value=0.007 Score=58.17 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI 303 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i 303 (403)
+|.++|.+||||||+++++.+.+... .+.+|+.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y 38 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF 38 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 47889999999999999998766432 3677888864
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.62 E-value=0.095 Score=54.29 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=28.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir 304 (403)
.-+++.|.||+|||++++.++.++. ....+.++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 3467899999999999999887543 2346777776543
No 273
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.62 E-value=0.033 Score=56.62 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+.-|+|+|+||+|||++|+.++.++.. .++.++...+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~-~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCC-CEEEeehHHHh
Confidence 567899999999999999999988763 36666555443
No 274
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.60 E-value=0.12 Score=48.97 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+-=++++|.+||||||+...+...+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 344678999999999999999887654
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.55 E-value=0.046 Score=54.93 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=35.6
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
+-+.|..++|-|+||+|||.+|+.++.++.. .+++++.-++..+
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-~~i~vsa~eL~sk 187 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-EPIVMSAGELESE 187 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-CeEEEEHHHhhcC
Confidence 4466899999999999999999999999864 3677777665543
No 276
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.065 Score=53.98 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=28.3
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+....-=.++-|+||+||||+|+-++..... .++.+|.
T Consensus 44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-~f~~~sA 81 (436)
T COG2256 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-AFEALSA 81 (436)
T ss_pred hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-ceEEecc
Confidence 3344556678999999999999999988763 3555543
No 277
>PLN02796 D-glycerate 3-kinase
Probab=95.51 E-value=0.014 Score=57.98 Aligned_cols=39 Identities=21% Similarity=0.011 Sum_probs=30.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ 302 (403)
+.+-+|.++|.+||||||+++.+...+... ....|+.|+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 467899999999999999999999877632 245566664
No 278
>PRK09183 transposase/IS protein; Provisional
Probab=95.51 E-value=0.14 Score=49.11 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=27.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~ 306 (403)
.+.++++|+||+||||+|..+..... +..+..++...+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 45688999999999999999864421 223445554444433
No 279
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.50 E-value=0.052 Score=55.38 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
.+.-+++.|+||+|||++|+.++..+.. .++.+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~-~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA-TFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEeh
Confidence 3677999999999999999999988763 2455543
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.46 E-value=0.22 Score=44.07 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=58.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHH-----HHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLIL-----EQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLL 337 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir-----~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll 337 (403)
..+++.++|.+||||||+.+.++...+. .+-+.++...+. +... .-+...+ .+. . ..+++ .+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--LS~--G-~~qrl-----~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ--LSV--G-ERQMV-----EIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe--cCH--H-HHHHH-----HHH
Confidence 4689999999999999999999876542 233444321110 0000 0000000 000 0 01111 122
Q ss_pred HHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668 338 SRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (403)
Q Consensus 338 ~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p 380 (403)
...+.+-..+|+|- .++....|+.+++.+.++. ...++++...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 23357788999998 5678888888777777653 4555555443
No 281
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.45 E-value=0.097 Score=48.78 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=26.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
...++++.|.||+||||++.+++.+. +.+..+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 36899999999999999998875321 23345666654
No 282
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.44 E-value=0.18 Score=45.42 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=60.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHH---------HHHHhhcCCCccc--CCC--hHHHHHHHHH--H
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNL---------ILEQMKVPGLLRK--HNY--SERFQCLMGR--A 329 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~---------ir~~l~~~g~~~~--~~~--~~~~~~~~~~--a 329 (403)
.+++.++|.+||||||+.+.++..++. .+-+.++... .+..+........ ..+ ....+.+.-. .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~L 105 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL 105 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhc
Confidence 578999999999999999999876542 2334443211 1111111000000 001 1111221100 0
Q ss_pred H--HHHHHHHHH-HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668 330 N--AIFDVLLSR-ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (403)
Q Consensus 330 ~--~~~~~ll~~-al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p 380 (403)
. +..+-.+.+ .+.+...+|+|- .++.+..|+.+++.+.+.. ...++++...
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 0 111112223 357888999998 6778888888777776542 3455555443
No 283
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.12 Score=51.39 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEecc
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT 300 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~ 300 (403)
.+.++++++|++||||||+-+.++--.. ..+-+.|+.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 3568999999999999999999975332 234455544
No 284
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.43 E-value=0.012 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+|+++|++||||||+.+.+....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999887765
No 285
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.39 E-value=0.014 Score=56.62 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=30.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ 302 (403)
.+.+|+++|++|+||||.+.+|+..+. ...+.+|+.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 478999999999999999999876552 23467787775
No 286
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.38 E-value=0.1 Score=52.57 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=56.2
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCc------------cc-----------C
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLL------------RK-----------H 316 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~------------~~-----------~ 316 (403)
+.....++|++|+-.|||||+++.|++++-+. .+.+|+.|.=-.++..+|.. .+ -
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~i 148 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSI 148 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEecc
Confidence 34557899999999999999999999888753 36788777300011000000 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHH
Q 015668 317 NYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKS 357 (403)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~ 357 (403)
+.+..+..++..+. .+++.|.+.-..+|||.+-+..-
T Consensus 149 sP~~~~~~~i~~v~----rL~~~a~~~~~~ilIdT~GWi~G 185 (398)
T COG1341 149 SPQGFPGRYIAGVA----RLVDLAKKEADFILIDTDGWIKG 185 (398)
T ss_pred CCCCChHHHHHHHH----HHHHHhhccCCEEEEcCCCceeC
Confidence 01122334444333 46666667778889999887765
No 287
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.36 E-value=0.01 Score=60.37 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY 295 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~ 295 (403)
.+=|++.|.||+||||||+.+++-+...+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 577899999999999999999987765443
No 288
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.34 E-value=0.057 Score=56.69 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.=++|.|+||+|||++|+.++.+... .++.++...+..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~-~~~~i~~~~~~~ 126 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGV-PFFSISGSDFVE 126 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC-CeeeccHHHHHH
Confidence 455899999999999999999988742 366666555444
No 289
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.33 E-value=0.069 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+.-+++.|+||+||||+|+.++.++.. .++.+..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~-~~~~v~~ 189 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVG 189 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCC-CEEecch
Confidence 456899999999999999999998764 3444443
No 290
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.32 E-value=0.13 Score=52.73 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=25.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..-+++.|+||+||||+|+.+++.... .++.++
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~-~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDA-PFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence 345778999999999999999987653 355554
No 291
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.31 E-value=0.058 Score=50.39 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=28.4
Q ss_pred EEEEEccCCCChhHHHHHHHHh----CCCccEEEeccHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ 306 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~----~~~~~~v~ls~D~ir~~ 306 (403)
.+++.|.+|+|||++.+.++.+ .++.+++.++.+++...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 4678999999999998877653 45556788877765443
No 292
>PRK06921 hypothetical protein; Provisional
Probab=95.28 E-value=0.26 Score=47.43 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=29.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc---cEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls~D~ir~~ 306 (403)
..-++|.|.||+|||++|..++.++..+ .++.++..+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 4678999999999999999998876532 3455555444443
No 293
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.21 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
+-+..++++|+||.||||.|+.+++.+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 446789999999999999999998865
No 294
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.27 E-value=0.022 Score=48.38 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
...+|+|.|.-|||||||++.+++.+..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4589999999999999999999999863
No 295
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.26 E-value=0.022 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~ 287 (403)
.++++++|++||||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5889999999999999999987
No 296
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.25 E-value=0.021 Score=55.52 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN 301 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D 301 (403)
.+...+|-++|.|||||||+..++...+.. ....+|..|
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 356899999999999999999999887643 245555444
No 297
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.23 E-value=0.02 Score=58.35 Aligned_cols=39 Identities=15% Similarity=-0.052 Sum_probs=30.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
..|.+|-++|.+||||||+++.+...+.. ....+|+.|+
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 45889999999999999999999766532 2355667675
No 298
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.22 E-value=0.024 Score=51.07 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.6
Q ss_pred EEEEEccCCCChhHHHHHHH-HhCCCccEEEe
Q 015668 268 VMMMVGLPASGKTTWAEKWV-KDHPEKRYILL 298 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~-~~~~~~~~v~l 298 (403)
++++.|..||||||+.+++. ....+.++.+|
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence 67899999999999999999 44444445444
No 299
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.22 E-value=0.049 Score=57.20 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+.=++|.|+||+|||++|+.++.++.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45689999999999999999999875
No 300
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.22 E-value=0.22 Score=47.38 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=31.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l 307 (403)
..++|.|.||+|||++|..++..+.. ..+++++..++...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 47899999999999999999887642 245667666666554
No 301
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.21 E-value=0.014 Score=54.10 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC-CCccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH-PEKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~-~~~~~v~ls~ 300 (403)
..+++.+||++||||||+.|.+..-. +..+-+.++.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 46899999999999999999996422 2334555544
No 302
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.088 Score=57.66 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir 304 (403)
.++|+|+|++|+||||.+.+|+..+. .+...+++.|..|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 58999999999999999999986541 2346678888654
No 303
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.2 Score=53.43 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=32.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.++=|+|-|+||+||||+|+.++.+-. ..++.|..-+++.++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~-~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAG-MNFLSVKGPELFSKY 508 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhc-CCeeeccCHHHHHHh
Confidence 488999999999999999999998753 346777666555443
No 304
>PRK08760 replicative DNA helicase; Provisional
Probab=95.17 E-value=0.14 Score=53.48 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
...++++.|.||.|||+||-.++.... ...+.++|.+
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 368999999999999999988875431 2346677775
No 305
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.16 E-value=0.086 Score=58.05 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.++-|++.|+||+||||+|+.++.++.. .++.++...
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~-~~i~i~~~~ 247 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGA-YFISINGPE 247 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC-eEEEEecHH
Confidence 3567999999999999999999998763 356665544
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.16 E-value=0.018 Score=57.31 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=29.6
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D 301 (403)
...+.+|.++|+|||||||++..+...+.. ....+|+.|
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 345789999999999999999987665543 235666665
No 307
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.15 E-value=0.023 Score=52.39 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.9
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+.+.+|.++|.+|||||||.+++.+.+.
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999988744
No 308
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.14 E-value=0.012 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHhCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~ 291 (403)
|++.|.||.|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999887653
No 309
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.077 Score=51.58 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=29.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
-.-|+|.|+||.|||++|+..+.+.+. -+..+|+-++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLv 203 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV 203 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHH
Confidence 467899999999999999999988763 35666655444
No 310
>PHA02244 ATPase-like protein
Probab=95.12 E-value=0.04 Score=55.37 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=45.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v 347 (403)
-|+|.|+||+||||+|+.++..+.. .++.++. +.+.+...|.... ...|.. .-+-.++++|..+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~-pfv~In~--l~d~~~L~G~i~~---~g~~~d----------gpLl~A~~~GgvL 184 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDL-DFYFMNA--IMDEFELKGFIDA---NGKFHE----------TPFYEAFKKGGLF 184 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-CEEEEec--ChHHHhhcccccc---cccccc----------hHHHHHhhcCCEE
Confidence 4678999999999999999987653 3666753 2222222232110 111210 0122345789999
Q ss_pred EEeCCCC-CHHHHHH
Q 015668 348 IIDQTNV-FKSARKR 361 (403)
Q Consensus 348 IlD~Tn~-~~~~R~~ 361 (403)
|||..+. .++....
T Consensus 185 iLDEId~a~p~vq~~ 199 (383)
T PHA02244 185 FIDEIDASIPEALII 199 (383)
T ss_pred EEeCcCcCCHHHHHH
Confidence 9999764 4444443
No 311
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.16 Score=52.24 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir 304 (403)
..+++++|++|+||||.+.+|+..+. .....+|+.|..|
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 46999999999999999888876542 2357778888743
No 312
>PRK04328 hypothetical protein; Provisional
Probab=95.11 E-value=0.1 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=27.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
...++++.|.||+|||+++.+++.+. ..+..+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 35789999999999999999876542 22345666664
No 313
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.12 Score=54.37 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467889999999999999999988764
No 314
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.10 E-value=0.065 Score=55.29 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
.+.-++|+|+||+|||++|+.++.++... ++.+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~-fi~V~~ 250 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT-FLRVVG 250 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC-EEEEec
Confidence 35678899999999999999999987642 444433
No 315
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.08 E-value=0.018 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEccCCCChhHHHHHHHHhCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~ 291 (403)
|+++|.+|+||||+.++++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68899999999999999997653
No 316
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.08 E-value=0.016 Score=51.53 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.++.++|.+||||||++.++.+.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999988764
No 317
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.07 E-value=0.14 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.-+++.|+||+||||+|+.+++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468899999999999999998764
No 318
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.06 E-value=0.02 Score=63.60 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|.+-|+|||||||+|+.+++.+. +.+|+++.+...+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHH
Confidence 5888899999999999999999997 7889888765554
No 319
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.05 E-value=0.043 Score=49.59 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK 308 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~ 308 (403)
..-++|.|.||.|||++|..++.++- ......++..++.+++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 45699999999999999988865332 22367788888888875
No 320
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.19 Score=54.10 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.4
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+-+..+|++|.+|.||||+|+.+++.+.
T Consensus 35 gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 35 QRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467899999999999999999999875
No 321
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.02 E-value=0.019 Score=51.10 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=18.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+.+++++|.+|+||||+.+++...+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998876554
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.02 E-value=0.063 Score=51.68 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
--+|+++|.+||||||+.+.+....+.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 358999999999999999999877753
No 323
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.01 E-value=0.38 Score=43.79 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=61.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--C-CccEEEeccHH-----HHHHhhcCCCcccCCCh-HHHHHHH--HH---H-
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGTNL-----ILEQMKVPGLLRKHNYS-ERFQCLM--GR---A- 329 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~-~~~~v~ls~D~-----ir~~l~~~g~~~~~~~~-~~~~~~~--~~---a- 329 (403)
..+++.++|++||||||+.+.++..+ + ..+-+.++... ++..+............ ...+... .. .
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCC
Confidence 35889999999999999999998765 3 23344443221 22222111100000001 1111111 00 0
Q ss_pred -HHHHH-HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEE-CChH
Q 015668 330 -NAIFD-VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF-PKPE 381 (403)
Q Consensus 330 -~~~~~-~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l-~~pe 381 (403)
.+..+ .+....+.+-..+|+|- +.+....|+.+++.+.+.. ...++++ ..++
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 01111 22233357788999998 6677888888777776642 3444444 4344
No 324
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.01 E-value=0.021 Score=50.17 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
-.-|+++|.+||||||+|..+.+.. +..++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g----~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRG----HRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CeEEECC
Confidence 4678999999999999999998763 3455444
No 325
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.00 E-value=0.035 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
+|.++|+|||||||+|+-+.+.... +.+-=.|.+++.|.
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~~--~~~~~~d~ik~~l~ 40 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYNA--VKYQLADPIKEILA 40 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCc--EEEehhHHHHHHHH
Confidence 7889999999999999999765331 21222355655553
No 326
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.99 E-value=0.18 Score=46.87 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=26.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
..++++.|.||+|||+++.+++.+. ..+..+.++.+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5789999999999999999887532 12335566664
No 327
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.98 E-value=0.051 Score=56.85 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.++-|+|.|+||+|||++|+.++.+... .++.++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~-~~~~l~~~ 293 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQL-PLLRLDVG 293 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC-CEEEEEhH
Confidence 4678999999999999999999998753 35556443
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.98 E-value=0.44 Score=42.26 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=58.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHH----HH---HHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM----GR---ANAIFDV 335 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~----~~---a~~~~~~ 335 (403)
..+++.++|.+||||||+.+.++..++. .+-+.++.. ..+. +.-...... ....+.+. .+ -++..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~~~~-~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPYLPL-GTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCcccc-ccHHHHhhccCCCCCCHHHHHHHH
Confidence 3578999999999999999999877542 233333221 0010 000000000 00001110 00 0010111
Q ss_pred HHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECC
Q 015668 336 LLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK 379 (403)
Q Consensus 336 ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~ 379 (403)
++...+.+.+.+|+|- +++....++.+++.+.+++ ..++++..
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~tiiivsh 146 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-ITVISVGH 146 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC-CEEEEEeC
Confidence 2233357888999998 5677888887777777764 44544443
No 329
>PRK08181 transposase; Validated
Probab=94.91 E-value=0.15 Score=49.19 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK 308 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~ 308 (403)
.-++++|+||+|||++|..++.+.- ...++.++..++.+++.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 4589999999999999999875432 22356666676666553
No 330
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.89 E-value=0.016 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEK 293 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~ 293 (403)
+|++||..+|||||+++.|.+++...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 68899999999999999998877633
No 331
>PF13479 AAA_24: AAA domain
Probab=94.88 E-value=0.057 Score=50.13 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=25.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
+.-+++.|.||+||||+|..+ + ..++|++|.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~--k~l~id~E~ 33 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----P--KPLFIDTEN 33 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----C--CeEEEEeCC
Confidence 456889999999999999999 2 267887764
No 332
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.88 E-value=0.017 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.||+||||+.+++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998877
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.025 Score=57.75 Aligned_cols=40 Identities=30% Similarity=0.227 Sum_probs=30.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL 304 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir 304 (403)
...+++++|++||||||.+.+++.... .....+++.|..|
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 357899999999999999999986431 2346678888744
No 334
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.88 E-value=0.017 Score=51.12 Aligned_cols=25 Identities=44% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
++.++|.+||||||++.++.+.+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999887653
No 335
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.87 E-value=0.12 Score=55.32 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
..+.+.++|.+||||||+++-+...+|..+-+.++.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g 410 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKING 410 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECC
Confidence 358899999999999999999998876555666654
No 336
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.87 E-value=0.035 Score=51.11 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTN 301 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D 301 (403)
..|.++|.+||||||+.+++...++.. +..++..|
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d 37 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITND 37 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCC
Confidence 468899999999999999998875432 34444444
No 337
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.85 E-value=0.12 Score=51.07 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=27.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHH--hCC------CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK--DHP------EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~--~~~------~~~~v~ls~D~ 302 (403)
...++.++|.||||||+++.+++- .++ +...+.|+++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 358899999999999999988763 222 23467776654
No 338
>CHL00176 ftsH cell division protein; Validated
Probab=94.83 E-value=0.27 Score=53.20 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=28.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
+.-|+|.|+||+|||++|+.++.+.. ..++.++...+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~is~s~f 252 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSISGSEF 252 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCeeeccHHHH
Confidence 56699999999999999999998764 23666655443
No 339
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.81 E-value=0.035 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+++++|.+|||||||.+.+.+....
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~ 26 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHG 26 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccC
Confidence 6789999999999999999887543
No 340
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.23 Score=54.29 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-...+|++|.+|.||||+|+.+++.+.
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999999999999999998875
No 341
>PRK05636 replicative DNA helicase; Provisional
Probab=94.78 E-value=0.13 Score=54.19 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHhhc--CCCc----cc-CCChHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQMKV--PGLL----RK-HNYSERFQCLMGRAN 330 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l~~--~g~~----~~-~~~~~~~~~~~~~a~ 330 (403)
..++|++.|.||.||||||-.++.... .+...++|.+ .+..++.. .+.. +. .-....|+.+.+.+.
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~ 343 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLG 343 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999887764321 2335566665 34444321 1110 00 001123332222211
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEE
Q 015668 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVF 377 (403)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l 377 (403)
. +.+...+|-|..+++-..-+..++.++..+.+.+|++
T Consensus 344 ----~-----l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvI 381 (505)
T PRK05636 344 ----K-----IAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVV 381 (505)
T ss_pred ----H-----HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 2445567777778776544445555554333344444
No 342
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.76 E-value=0.026 Score=54.08 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTN 301 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D 301 (403)
...+.+|+++|+.|||||||.++|...+..+ .-.+||.|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 3567899999999999999999986544332 13567777
No 343
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.1 Score=55.06 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
+.=|+|||+||+|||-+|+..+.+.. -.++.|-.-+++.+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag-~NFisVKGPELlNk 584 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG-ANFISVKGPELLNK 584 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc-CceEeecCHHHHHH
Confidence 77899999999999999999998764 24777755555443
No 344
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.18 Score=56.01 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-...+|+.|.+|+||||+|+.+++.+.
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4467889999999999999999998875
No 345
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.73 E-value=0.028 Score=56.70 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=26.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~ 293 (403)
.+.+|.++|++||||||++.++.+.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 47899999999999999999999988754
No 346
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=94.72 E-value=0.25 Score=44.51 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=25.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
||-+.+..|||++|+|++|++.+. +-.++.+.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~~ii~~ 35 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG---YPYYDREIIEE 35 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-----EE-HHHHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC---CccCCHHHHHH
Confidence 566789999999999999999997 77787755443
No 347
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.028 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
+.+|+++|+.|||||-+|-.|++.++ ..+||.|.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~DS 36 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLG---GEIISLDS 36 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcC---CcEEecch
Confidence 67999999999999999999999998 57899996
No 348
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.72 E-value=0.33 Score=48.29 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l 307 (403)
.-++++|.||+|||++|..++.++-. ..++.++.+++...+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 66899999999999999998876532 246677777766655
No 349
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.026 Score=57.28 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~i 303 (403)
..+.+|+++|++|+||||.+.+++..+. .+...+++.|..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 3468999999999999999999987543 234677888863
No 350
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.68 E-value=0.035 Score=52.29 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
..++++.|.||+||||++.+++... +++..+.++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 5699999999999999987765543 22345666655
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.68 E-value=0.031 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
++++.|.||+|||+++.+++.+.. ++..+.++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 368899999999999998865431 2346677764
No 352
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.68 E-value=0.028 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
...|+++|.|||||||+.+++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 353
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.65 E-value=0.028 Score=55.09 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D 301 (403)
....+|.++|+|||||||++..+...+.. ..+.+|+.|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45789999999999999999998765432 235566666
No 354
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.65 E-value=0.072 Score=58.67 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=30.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.-|+|.|+||+|||++|+.++.+... .++.++..++..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~-~fi~v~~~~l~~ 525 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGA-NFIAVRGPEILS 525 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEehHHHhh
Confidence 456899999999999999999998753 466776655443
No 355
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.22 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4578889999999999999999999886
No 356
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.64 E-value=0.28 Score=50.32 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=28.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..+++++.|.||+|||+||-.++.... ...+.++|.+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 368999999999999999988874332 2346677754
No 357
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.63 E-value=0.025 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.=++|.|.||+|||++|+++..-+|.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 45789999999999999999988874
No 358
>PRK13764 ATPase; Provisional
Probab=94.63 E-value=0.14 Score=54.73 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
...|+++|.|||||||+++.++...+....+++.-+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 456899999999999999999988765433443333
No 359
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.62 E-value=0.41 Score=49.26 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=27.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..+++++.|.||+|||||+..++.... ......+|.+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 368999999999999999988765421 2345667765
No 360
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.61 E-value=0.2 Score=50.57 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=26.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~ 300 (403)
+..+++.|+||+||||+++.+++++.. -.++.++.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 455789999999999999999876532 22566654
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.58 E-value=0.21 Score=52.59 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i 303 (403)
...+|+++|++|+||||++.+|+..+. .+...+++.|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 468999999999999999999876432 234667887753
No 362
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.34 Score=49.40 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||.||||+|+.+++.+.
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998874
No 363
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=94.56 E-value=0.23 Score=47.33 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=54.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
.+|++.|++|||||+-++.+. ++. |..+ |.+=- .-+....+.+ . .......+--
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lE-DlG---yycv--DNLPp--------------~Llp~~~~~~----~--~~~~~~~kvA 55 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLE-DLG---YYCV--DNLPP--------------QLLPKLADLM----L--TLESRITKVA 55 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHH-hcC---eeee--cCCCH--------------HHHHHHHHHH----h--hcccCCceEE
Confidence 689999999999998777764 443 6555 43100 0011111111 0 0000123446
Q ss_pred EEEeCCCCC-HHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 015668 347 FIIDQTNVF-KSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 347 vIlD~Tn~~-~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~ 389 (403)
|++|--+.. .+.-..++..+++.+ .+.++++++. +++++|-+.
T Consensus 56 v~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e 102 (286)
T COG1660 56 VVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE 102 (286)
T ss_pred EEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence 888885542 122233455566553 4788899997 788888764
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.56 E-value=0.037 Score=53.07 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=56.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc-c-EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-R-YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~-~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
...|+++|.+||||||+.+.+....+.. . .+.+. | -. ++...+... ...... ... .-+.+++..+++.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d-~~-E~~l~~~~~-~~~~~~-~~~-----~~~~~~l~~~LR~ 196 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-D-PP-ELRLPGPNQ-IQIQTR-RDE-----ISYEDLLKSALRQ 196 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-S-SS--S--SCSSE-EEEEEE-TTT-----BSHHHHHHHHTTS
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEec-c-cc-ceeecccce-EEEEee-cCc-----ccHHHHHHHHhcC
Confidence 5899999999999999999999988865 3 33332 2 11 111112100 000000 000 0122345556665
Q ss_pred CC-eEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHh
Q 015668 344 PR-NFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 344 g~-~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R 390 (403)
+- .+|+.-.--..... .++.+..-+. +.-+.-.++.....|...=
T Consensus 197 ~pD~iiigEiR~~e~~~--~~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l 244 (270)
T PF00437_consen 197 DPDVIIIGEIRDPEAAE--AIQAANTGHLGSLTTLHANSAEDAIERLADL 244 (270)
T ss_dssp --SEEEESCE-SCHHHH--HHHHHHTT-EEEEEEEE-SSHHHHHHHHHHH
T ss_pred CCCcccccccCCHhHHH--HHHhhccCCceeeeeeecCCHHHHHHHHHHH
Confidence 54 45555443333332 2433333333 3456667778888888753
No 365
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.53 E-value=0.023 Score=62.37 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+|.+.|+|||||||+|+.|++.++ +.++++..+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~ 36 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMY 36 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEe
Confidence 688899999999999999999986 6677666543
No 366
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.52 E-value=0.029 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 688999999999999999964
No 367
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.52 E-value=0.034 Score=55.02 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.-|+|.|+||+||||+|+.+++.+... ++.|+.+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~~ 98 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNLD 98 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEec
Confidence 348899999999999999999988643 4444433
No 368
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.51 E-value=0.14 Score=48.89 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=56.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHhh--cCCCcc----cCCC-hHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQMK--VPGLLR----KHNY-SERFQCLMGRANA 331 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l~--~~g~~~----~~~~-~~~~~~~~~~a~~ 331 (403)
.+++++.|.||+|||+||..++.... ...+..+|.+ .+..++. ..+..- .... ...|+ ++.+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~----~~~~ 94 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFE----RLQA 94 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHH----HHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHH----HHHH
Confidence 57999999999999999988865321 1347778775 3333332 123210 0000 11111 1111
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcC-CcEEEEEE
Q 015668 332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (403)
Q Consensus 332 ~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (403)
... .+.+...+|.|....+.+.-+..++.++.. .++.+|++
T Consensus 95 ----~~~-~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I 136 (259)
T PF03796_consen 95 ----AAE-KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI 136 (259)
T ss_dssp ----HHH-HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred ----HHH-HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 111 224445777787777877776677777654 45655554
No 369
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.50 E-value=0.16 Score=53.58 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~ 300 (403)
..+.+.++|.+||||||+++-+....+. ++-+.++.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3688999999999999999999876643 34565653
No 370
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.50 E-value=0.027 Score=49.12 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
+=||++|..||||||+++.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 348999999999999999997654
No 371
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.48 E-value=0.054 Score=51.74 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
.-.++++.|.||||||+|+.+++.+... ...+.+++++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4579999999999999999988654332 2356666664
No 372
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.47 E-value=0.35 Score=47.97 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.-+..++++|+||.||||+|+.+++.+.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999999999999999988764
No 373
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.047 Score=50.63 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=28.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
-+|.+=|+.||||||.|+.+++.+. +.+|++-.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGam 38 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAM 38 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC---CCeecccHH
Confidence 4566679999999999999999997 888887654
No 374
>PRK09165 replicative DNA helicase; Provisional
Probab=94.43 E-value=0.35 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~ 288 (403)
...++++.|.||.||||||-.++.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~ 239 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAF 239 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHH
Confidence 358999999999999999876543
No 375
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.4 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||.||||+|+.+++.+.
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4468999999999999999999998875
No 376
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.18 Score=49.68 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.++|++-|+||.|||++-+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 68999999999999999999998875
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.41 E-value=0.028 Score=47.71 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
.+++.++|.+||||||+.+.++...+ ..+.+.++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred CCEEEEEccCCCccccceeeecccccccccccccc
Confidence 57899999999999999999987764 23455554
No 378
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.41 E-value=0.039 Score=59.17 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
...++.||||+||.||||+|.-+++.-.. .++-||.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY-sVvEINA 359 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-SVVEINA 359 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc-eEEEecc
Confidence 35789999999999999999999988652 2444554
No 379
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=94.40 E-value=0.045 Score=53.61 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
..+|+++|+.|||||.+|-++++.+ ..+||.|.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~----~eIIsaDS 36 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK----AEIINVDS 36 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC----CcEEeccH
Confidence 4589999999999999999999984 37899996
No 380
>PRK06321 replicative DNA helicase; Provisional
Probab=94.39 E-value=0.33 Score=50.65 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH----HHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN----LILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D----~ir~~l 307 (403)
..+|++.|-||.|||+||-.++... ..+...++|.+ .+.++|
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 5899999999999999998887643 12345667665 444444
No 381
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.38 E-value=0.17 Score=53.92 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=59.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe--------ccHHHHHHhhc--------CCCcccC-CChH---HHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV--------PGLLRKH-NYSE---RFQ 323 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l--------s~D~ir~~l~~--------~g~~~~~-~~~~---~~~ 323 (403)
..+.+.++|.+||||||+++-+.+-+.. .+-+.+ +.+.+|+.+.. .|..+++ .+.. .-+
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 3577889999999999999999987764 334444 22345666541 1111110 0110 113
Q ss_pred HHHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCCCHHHHHHHHHHHhcC
Q 015668 324 CLMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF 369 (403)
Q Consensus 324 ~~~~~a~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~ 369 (403)
++.+.++.. +.+.+... -+|.+.++. ..+++.-+|++ +..++.+
T Consensus 434 ei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQr-laiARal 480 (567)
T COG1132 434 EIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQR-LAIARAL 480 (567)
T ss_pred HHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHH-HHHHHHH
Confidence 344444322 33344332 557888886 47888888886 6666654
No 382
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.35 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457789999999999999999998765
No 383
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.37 E-value=0.037 Score=46.44 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred EEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
|++.|.+|+||||++..++..+. .+++.+++.|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999988876543 2346777776
No 384
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.33 E-value=0.33 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
++++|+||.|||++|+.++..+
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998865
No 385
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.32 E-value=0.038 Score=48.36 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
++.++|.+||||||++..+...+. ..++.++..|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 377899999999999998876542 2346666656
No 386
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.27 E-value=0.033 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.|+|||||+..++....
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6889999999999999997543
No 387
>PRK13768 GTPase; Provisional
Probab=94.22 E-value=0.04 Score=52.66 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
+.++++.|.+||||||++..++..+.. +...+++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 467899999999999998887765532 3466676663
No 388
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.22 E-value=0.033 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+++++...
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 389
>PRK08506 replicative DNA helicase; Provisional
Probab=94.18 E-value=0.51 Score=49.30 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=28.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...++++.|.||.|||+||-.++.... .+.+.++|.+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE 229 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE 229 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 368999999999999999988865432 2346677765
No 390
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.43 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..+++.|+||+||||+|+.+++.+.
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999998875
No 391
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.18 E-value=0.049 Score=53.99 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=56.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
.-|+++|.+||||||+.+.|.... +..+.+.| ++-.+ |..... ....... ... -.+..++..+++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti--Ed~~E-l~~~~~-n~v~l~~--~~~-----~~~~~lv~~aLR 213 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--EDTAE-IQCAAE-NAVALHT--SDT-----VDMARLLKSTMR 213 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe--cCCcc-cccCCC-CEEEecc--CCC-----cCHHHHHHHHhC
Confidence 467899999999999999998875 33333333 32222 211110 0000000 000 013345666677
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R 390 (403)
.+-..|+=.=--..++.. .++.+..-+ -+.-+.-+++.+.++|...-
T Consensus 214 ~~PD~IivGEiRg~ea~~-~l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l 262 (323)
T PRK13833 214 LRPDRIIVGEVRDGAALT-LLKAWNTGHPGGVTTIHSNTAMSALRRLEQL 262 (323)
T ss_pred CCCCEEEEeecCCHHHHH-HHHHHcCCCCceEEEECCCCHHHHHHHHHHH
Confidence 655555433112233322 343333223 25556667777777888754
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.17 E-value=0.038 Score=56.39 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l 298 (403)
+.-|+|+|+||+||||+|+.++..+.. .++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~-~fi~v 78 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKV 78 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-eEEEe
Confidence 466899999999999999999998763 24444
No 393
>PRK08006 replicative DNA helicase; Provisional
Probab=94.15 E-value=0.21 Score=52.17 Aligned_cols=37 Identities=19% Similarity=0.447 Sum_probs=27.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..++|++.|-||.|||+||-.++.... .+.+.++|.+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE 262 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE 262 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 368999999999999999888764421 2346677765
No 394
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.15 E-value=0.03 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|++.|.|||||||+.+++....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999883
No 395
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.14 E-value=0.032 Score=59.00 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
-.+++|+|+||+||||+|+.+++.+..
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHh
Confidence 369999999999999999999987764
No 396
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.13 E-value=0.3 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.++++|.||+||||+++.+++++.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 368999999999999999998764
No 397
>PRK07004 replicative DNA helicase; Provisional
Probab=94.11 E-value=0.42 Score=49.80 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=27.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D 301 (403)
..+++++.|-||+|||+||..++... ..+...++|.+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE 251 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME 251 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999998876432 12335667765
No 398
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.11 E-value=0.049 Score=57.40 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+++|+|+|||||||.++.|++++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999999986
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.10 E-value=0.24 Score=45.33 Aligned_cols=21 Identities=29% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~ 287 (403)
++++++|++||||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 799999999999999999987
No 400
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.10 E-value=0.043 Score=56.09 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
+.-|+|+|+||+||||+|+.+++.+.. .++.++
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~-~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-hheeec
Confidence 467899999999999999999988752 355553
No 401
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.09 E-value=0.038 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.+||||||+..++....
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999998654
No 402
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=94.09 E-value=0.062 Score=58.46 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
..+|.+.|++||||||+|+.+++.+. +.+++++.+...+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHH
Confidence 44788899999999999999999997 7889888775554
No 403
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.06 E-value=0.14 Score=45.38 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=30.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
-.++|.+.|.--|||||+|++|++.++....-...++-+.+++
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l 49 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHL 49 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 3678889999999999999999998774322223334444444
No 404
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.00 E-value=0.061 Score=53.25 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
...|+++|.+||||||+++.++... +..+.+.| ++-. ++..... ....+.. .. ..-+..++..++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtI--Ed~~-El~~~~~-~~v~~~~--~~-----~~~~~~ll~~aL 216 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII--EDTG-EIQCAAE-NYVQYHT--SI-----DVNMTALLKTTL 216 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEE--cCCC-ccccCCC-CEEEEec--CC-----CCCHHHHHHHHh
Confidence 4678899999999999999998763 33334444 2211 1211110 0000000 00 011334556666
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~ 391 (403)
+.+-+.|+=.=--..++.. +++.+..-+ -+.-+.-+++...+.|...-.
T Consensus 217 R~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~ 267 (319)
T PRK13894 217 RMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAATLHANNAKAGLDRLKSLI 267 (319)
T ss_pred cCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 7655554433222333332 344433323 255566677777778776544
No 405
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.99 E-value=0.06 Score=53.62 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=63.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
...|+++|.+||||||+.+.+....+.. +.+.| ++..+ +.......... ...... ..+..--+..++..+++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti--Ed~~E-l~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV--EDARE-IVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLRL 234 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe--cCCCc-cccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhcc
Confidence 4678999999999999999999988853 23333 32222 21111000000 000000 000001123456666675
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhccccCccc
Q 015668 344 PRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEMGKEQ 398 (403)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R~~~~g~~V 398 (403)
.-.+|+=.---..+... +++.+..-|. +.-+.-.++...+.|........+..+
T Consensus 235 ~PD~IivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~ 290 (332)
T PRK13900 235 RPDRIIVGELRGAEAFS-FLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGM 290 (332)
T ss_pred CCCeEEEEecCCHHHHH-HHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCC
Confidence 55444433222334332 3443333232 455677777778888876544434333
No 406
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.97 E-value=0.043 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.||+||||+.+++....
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6789999999999999998643
No 407
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.052 Score=58.26 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=38.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL 312 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~ 312 (403)
.-++.|+|+||-|||++++.+++.+.. .|+.++.-.+|++-.+.|-
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCC-CEEEEecCccccHHHhccc
Confidence 578999999999999999999999975 4899988888777655564
No 408
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.95 E-value=0.043 Score=47.75 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+++++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999864
No 409
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.94 E-value=0.05 Score=50.30 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...+++++|.|||||||++.+++.+.. ....+.++++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 468999999999999999999886542 2345667665
No 410
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.93 E-value=0.065 Score=51.37 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=27.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
...+++++|.||+||||++.+++.+. ..+..+.++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 36899999999999999999986532 22345666655
No 411
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.93 E-value=0.19 Score=54.57 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
.=|+++|+||+||||+|+.++.++.. .++.++...+..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~-~f~~is~~~~~~ 223 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFVE 223 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC-CEEEEehHHhHH
Confidence 34899999999999999999988753 366676665544
No 412
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.84 Score=48.92 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|++|.||||.|+.+++.+.
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998765
No 413
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.89 E-value=0.05 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+..++++|+||+||||+|+.+++++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445789999999999999999998764
No 414
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.89 E-value=0.05 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
....+|.++|++|.||||+|.++++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 46899999999999999999998866
No 415
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.87 E-value=0.053 Score=49.74 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
...++.++|.||||||+++.+++.... ....+.++++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 358999999999999999998875331 23466676653
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.054 Score=54.73 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i 303 (403)
...++++++|+.|+||||.+.+++..+. .....+++.|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 3478999999999999999999886542 234667888864
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=93.85 E-value=0.048 Score=51.62 Aligned_cols=71 Identities=15% Similarity=0.332 Sum_probs=42.1
Q ss_pred ccceeccccccCCCcccCCCC---CCCCCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH----HHHHHhhcC
Q 015668 240 EGYKSWVSALDDGNSVLGPTF---CNMKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN----LILEQMKVP 310 (403)
Q Consensus 240 ~g~~p~~~~~~~~~~~~~p~~---~~~~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D----~ir~~l~~~ 310 (403)
+||..|..-....... .|.. ..=....++++.|.||+||||++.+++.+.- ++..++++.+ .+++.+...
T Consensus 36 ~g~~~w~~~~~~~~~~-~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 36 EGFSSWSLLAAKAAAT-TPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred hccchHHHHHHhccCC-CCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc
Confidence 6788885533222222 2321 1113467999999999999999988765331 2335566654 566665444
Q ss_pred C
Q 015668 311 G 311 (403)
Q Consensus 311 g 311 (403)
|
T Consensus 115 g 115 (237)
T PRK05973 115 G 115 (237)
T ss_pred C
Confidence 4
No 418
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.85 E-value=0.41 Score=45.98 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=66.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH--------H----HHHHhhcCCCccc--CCChHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------L----ILEQMKVPGLLRK--HNYSERFQCLMGR 328 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D--------~----ir~~l~~~g~~~~--~~~~~~~~~~~~~ 328 (403)
...+++-++|-+||||||+++.+..-.. ..+-+.+... . +.+.|..-|...+ ..|.-. ...
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhe---lSG- 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHE---LSG- 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcc---cCc-
Confidence 3468999999999999999999987554 2334555422 1 2222222332111 001000 000
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668 329 ANAIFDVLLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 329 a~~~~~~ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R 390 (403)
.+..+-.+.+|+ -+-.-+|.|- ..+..+.|...+.++.+.+ .+.++++.-+-...+....|
T Consensus 113 -GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 113 -GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred -hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 011111233333 4566777776 6777888888888887653 45556665554444444444
No 419
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.84 E-value=0.06 Score=52.78 Aligned_cols=112 Identities=20% Similarity=0.114 Sum_probs=57.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
..|+++|.+||||||+++.+....+ ..+.+.| ++..+ +...+... ...... . .. .+..++..++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~~E-l~~~~~~~v~~~~~~---~----~~-~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDTRE-LQCAAPNVVQLRTSD---D----AI-SMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCchh-hcCCCCCEEEEEecC---C----CC-CHHHHHHHHh
Confidence 5678999999999999999988764 2334444 43333 22111100 000000 0 00 2334666667
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHh
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R 390 (403)
+.+-+.|+=.---..+.- .+++.+..-+. +.-+.-+++.+.+.|...-
T Consensus 202 R~~pD~iivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEAL-DLLKAWNTGHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred cCCCCEEEEeccCCHHHH-HHHHHHHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence 765555443322233332 23433333232 4456666677777886643
No 420
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.80 E-value=0.67 Score=41.77 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..+++.|+||.||||+|+.+++.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3457899999999999999999988764
No 421
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.80 E-value=0.064 Score=50.06 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--CC------ccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PE------KRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~~------~~~v~ls~D~ 302 (403)
..+++.++|.|||||||++.+++... +. ...+.|+++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 35899999999999999999997442 21 3466676643
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.78 E-value=0.063 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.0
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~ 288 (403)
.+.+++|..||||||+...+.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999887753
No 423
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.19 Score=52.48 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+-|+=|+|+|+||.|||-+|+..+-+..
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 345688999999999999999999987654
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.76 E-value=0.038 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+++++|.+|+||||++..++..+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999988764
No 425
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.062 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..++..+.|+.||||||+|..+.-.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999854
No 426
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.75 E-value=0.047 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.|||||||+.+++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 427
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.74 E-value=0.05 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+.++.++.||+||||||+.+.+.+-..
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLie 79 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE 79 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCC
Confidence 4578999999999999999999876443
No 428
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.73 E-value=0.049 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||++.++...
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999864
No 429
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.71 E-value=0.049 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+++++...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999754
No 430
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.69 E-value=0.05 Score=47.10 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.|+|||||+.+++....
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6889999999999999997543
No 431
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.68 E-value=0.058 Score=55.27 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=24.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.-++|+|+||+||||+|+.+++.+.. .++.++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV-PFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-Cceecc
Confidence 45789999999999999999987642 244443
No 432
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.68 E-value=0.046 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.|++||||+++++...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 688999999999999999755
No 433
>PRK04296 thymidine kinase; Provisional
Probab=93.65 E-value=0.05 Score=49.60 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=25.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC--CccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls 299 (403)
.+++++|.|||||||.+..++.++. .+..+++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5889999999999999988876653 23455563
No 434
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.63 E-value=0.051 Score=47.05 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.||+||||+..++....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
No 435
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.62 E-value=0.3 Score=50.71 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=60.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHH----HHhhc-CCCcccC--CCh-------------HHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLIL----EQMKV-PGLLRKH--NYS-------------ERFQC 324 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir----~~l~~-~g~~~~~--~~~-------------~~~~~ 324 (403)
.+.+-++|++||||||+|+.+.--.+. .+.+.++.-+++ ++++. -|=.++. -|. .+-+.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~k 441 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHH
Confidence 578889999999999999999865442 246777554543 33321 1111110 010 11123
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCe-EEEeC-CCCCHHHHHHHHHHHhc-CCcEEEEEECC
Q 015668 325 LMGRANAI-FDVLLSRASRTPRN-FIIDQ-TNVFKSARKRKLRLFVN-FRKIAVVVFPK 379 (403)
Q Consensus 325 ~~~~a~~~-~~~ll~~al~~g~~-vIlD~-Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~ 379 (403)
+++.|+.. ..+++- .+-+|.. .|=|. ..++--+|+| +.+++. |+.-.+|+++.
T Consensus 442 IieAA~lAgvHelIl-~lP~GYdT~iG~~G~~LSgGQRQR-IaLARAlYG~P~lvVLDE 498 (580)
T COG4618 442 VIEAARLAGVHELIL-RLPQGYDTRIGEGGATLSGGQRQR-IALARALYGDPFLVVLDE 498 (580)
T ss_pred HHHHHHHcChHHHHH-hCcCCccCccCCCCCCCCchHHHH-HHHHHHHcCCCcEEEecC
Confidence 34433311 223332 2346664 44444 5566667776 777776 45444555544
No 436
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=93.59 E-value=0.71 Score=43.51 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=68.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.+.+|++-|..||||...++++...+....+.+.+. +.+ . ..+.....+.+.....-..|
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~----------~~p---t-------~eE~~~p~lwRfw~~lP~~G 89 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL----------PKP---S-------DRERTQWYFQRYVQHLPAAG 89 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC----------CCC---C-------HHHHcChHHHHHHHhCCCCC
Confidence 489999999999999999999999887654444321 110 0 01111223444555557889
Q ss_pred CeEEEeCCCCCHHHHHH---------------HHHHHhcC----C-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 345 RNFIIDQTNVFKSARKR---------------KLRLFVNF----R-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~---------------~~~~~~~~----~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+..|+|.+....-...+ -|..|.+. + .+.-+++... ++..+|..+|..
T Consensus 90 ~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~ 158 (230)
T TIGR03707 90 EIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARID 158 (230)
T ss_pred eEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 99999987766533221 12233321 2 2333588887 899999999875
No 437
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.59 E-value=0.056 Score=53.82 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.-++++|.|++|+||||+++.|.+.+..
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 3589999999999999999999988764
No 438
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.58 E-value=0.99 Score=46.89 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=30.0
Q ss_pred EEEEEccCCCChhHHHHHHHHh----CCCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~----~~~~~~v~ls~D~ir~~l 307 (403)
-+++.|.+|+|||++++.+..+ .+...++.++.+.+...+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA 186 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 3788999999999999988764 334456778877765554
No 439
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.55 E-value=0.063 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
-..|+++|.+||||||+.+.+....+.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 467899999999999999999988775
No 440
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.52 E-value=0.055 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+.+++...
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 441
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.51 E-value=0.27 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
-=+++.|+||.||||-+..|++++-+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34668999999999999999887653
No 442
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.51 E-value=0.055 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.+|+||||+.+++....
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
No 443
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.51 E-value=0.2 Score=45.00 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC---------ccEEEeccHHHHHHhh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---------KRYILLGTNLILEQMK 308 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~---------~~~v~ls~D~ir~~l~ 308 (403)
..+.+.++|++||||||+-+.++.-.+. +.+.-++...+|++..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence 3678999999999999999999864441 1233345556777653
No 444
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.50 E-value=0.091 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++..++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 458999999999999999999987654
No 445
>COG1084 Predicted GTPase [General function prediction only]
Probab=93.50 E-value=0.45 Score=46.86 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=57.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC---c----cEEEe---ccHHHHHHhhc-CCCcccCCChHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---K----RYILL---GTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIF 333 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~---~----~~v~l---s~D~ir~~l~~-~g~~~~~~~~~~~~~~~~~a~~~~ 333 (403)
+...|+++|.|..|||||.+++-..-++ . .-+.| ..+.+|-++.. .|+++. . -...+.+..||-.++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDR-P-l~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDR-P-LEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCC-C-hHHhcHHHHHHHHHH
Confidence 4667889999999999999999765442 0 01222 22333333322 565432 1 122234454543222
Q ss_pred HHHHHHHhcCCCeEEEeC---CCCCHHHHHHHHHHHhcC
Q 015668 334 DVLLSRASRTPRNFIIDQ---TNVFKSARKRKLRLFVNF 369 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~---Tn~~~~~R~~~~~~~~~~ 369 (403)
+.+..=..+++|. +-.+.+++.++++.++..
T Consensus 245 -----~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 245 -----RHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred -----HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 2245666888887 567788888888888764
No 446
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.14 Score=53.57 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l 298 (403)
..+..+++.|+||+|||.+|+.++.+... .++.+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~-~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS-RFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC-eEEEe
Confidence 45779999999999999999999996652 24444
No 447
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.93 Score=48.78 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..+++.|+||.||||+|+.+++.+.
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3467899999999999999999998875
No 448
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.48 E-value=0.059 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
.++++++|++||||||+.+.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 38999999999999999998864
No 449
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.47 E-value=1.1 Score=48.92 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=26.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls 299 (403)
.+.+.++|.+||||||+++-++.-++. ++-+.++
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 578999999999999999999876542 3445554
No 450
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.46 E-value=0.3 Score=46.81 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=29.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
|+-|++-|+||.|||..|+.++.+..- .++.+..-.+.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kv-p~l~vkat~li 188 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKV-PLLLVKATELI 188 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCC-ceEEechHHHH
Confidence 678999999999999999999988753 25556554443
No 451
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.43 E-value=0.062 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+..+++.|+||+||||+|+.+++++..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 456789999999999999999998763
No 452
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.63 Score=49.06 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=32.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec--------cHHHHHHhh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG--------TNLILEQMK 308 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls--------~D~ir~~l~ 308 (403)
..+.+.++|.+||||||+...++--++. .+-+.+| ...+|+++.
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 3688999999999999999999987773 3445554 335666653
No 453
>PRK05748 replicative DNA helicase; Provisional
Probab=93.41 E-value=0.56 Score=48.61 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=30.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l 307 (403)
...++++.|.||.|||+||-.++.... .+...++|.+ .+.+++
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 368999999999999999988865421 2345667664 454444
No 454
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.40 E-value=0.099 Score=48.65 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..+++.++|.+||||||+.+.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998776
No 455
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.40 E-value=0.055 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.||+||||+.+++....
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6789999999999999997653
No 456
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.066 Score=49.20 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358899999999999999999987654
No 457
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.38 E-value=0.06 Score=49.73 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++..++ ..+-+.++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 64 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEEC
Confidence 358899999999999999999987764 23345453
No 458
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.44 Score=51.19 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467889999999999999999998764
No 459
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.38 E-value=0.73 Score=44.55 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=28.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
....++++|.+|+||||+++.++..+.. .....++.|.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~ 113 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 113 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4579999999999999999988765421 2355677764
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.36 E-value=0.069 Score=48.62 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|.+||||||+.+.++..++ ..+-+.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYK 60 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 357999999999999999999987654 22334443
No 461
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.36 E-value=0.18 Score=55.14 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe--------ccHHHHHHhh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMK 308 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l--------s~D~ir~~l~ 308 (403)
.+.|.++|.+||||||+++-+..-+.. .+-+.+ +.+.+|+.++
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 578899999999999999999865542 223433 2335676664
No 462
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=0.73 Score=50.09 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+-+..+|++|+||+||||+|+.+++.+.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34568899999999999999999998865
No 463
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.33 E-value=0.066 Score=51.84 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEK 293 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~ 293 (403)
.+|.++|.+||||||++.+|...+..+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999887644
No 464
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.31 E-value=0.07 Score=49.02 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++..++ ..+.+.++
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 368999999999999999999987653 23344443
No 465
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.30 E-value=0.075 Score=49.44 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=28.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...++++.|.||+||||++.+++.+.- .+..+.++++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 368999999999999999999875321 2346677776
No 466
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.68 Score=44.18 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=33.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~ 308 (403)
.|+=|+|.|+||+|||-+|+..+..... .++.+...++.++..
T Consensus 188 pprgvllygppg~gktml~kava~~t~a-~firvvgsefvqkyl 230 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVGSEFVQKYL 230 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccch-heeeeccHHHHHHHh
Confidence 3678999999999999999999876653 477776666666654
No 467
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.28 E-value=0.063 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++..++ ..+-+.++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 63 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN 63 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 358899999999999999999987654 23344453
No 468
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.28 E-value=0.067 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999999986543
No 469
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.27 E-value=0.07 Score=48.27 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+.+.++..++ ..+-+.+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 357899999999999999999987554 2334444
No 470
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.24 E-value=0.093 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-+++++|++||||||+.+.+.+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999997765
No 471
>PRK05595 replicative DNA helicase; Provisional
Probab=93.24 E-value=0.39 Score=49.74 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D 301 (403)
..+++++.|.||+|||+||-.++... ....+.++|.+
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 36899999999999999998886532 12346677765
No 472
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.23 E-value=0.064 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..-|+++|.+||||||+.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 344889999999999999999875
No 473
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.072 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358899999999999999999987553
No 474
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.095 Score=49.13 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+++.++..++ ..+-+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 358899999999999999999986653 2333444
No 475
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.23 E-value=0.049 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHHHhCCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~ 292 (403)
|+|-|.||.||||+|+.+++.+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 688999999999999999998864
No 476
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.21 E-value=0.51 Score=45.02 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.+-++++|.+|+||||+++++.+....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 567889999999999999999987654
No 477
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.20 E-value=0.067 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999987653
No 478
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.19 E-value=0.068 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+++++...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999998754
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.18 E-value=0.072 Score=49.37 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++...+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 358999999999999999999986543
No 480
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.17 E-value=0.069 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
-.=|++.|++||||||+.+++...
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSS
T ss_pred EEEEEEECCCccchHHHHHHhhhc
Confidence 355688999999999999999753
No 481
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.17 E-value=0.067 Score=49.26 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++..++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357999999999999999999987653
No 482
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.068 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358999999999999999999987765
No 483
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.067 Score=50.12 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358899999999999999999997654
No 484
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.16 E-value=0.52 Score=46.38 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=49.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~ 343 (403)
..-++|.|.||+|||++|..++.++..+ ....+....+..+|.. .. .+ .. +.+.++ .+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-~~-~~----~~-----------~~~~l~-~l~~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-SI-SD----GS-----------VKEKID-AVKE 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-HH-hc----Cc-----------HHHHHH-HhcC
Confidence 4578999999999999999998876432 2445555666555531 00 00 00 011221 1366
Q ss_pred CCeEEEeCCC---CCHHHHHHHHHHH
Q 015668 344 PRNFIIDQTN---VFKSARKRKLRLF 366 (403)
Q Consensus 344 g~~vIlD~Tn---~~~~~R~~~~~~~ 366 (403)
-..+|||.-. ++.-.|..++..+
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~I 243 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVI 243 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHH
Confidence 7789999853 5555565565555
No 485
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.16 E-value=0.066 Score=50.32 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=26.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 358899999999999999999986653 2233444
No 486
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.82 Score=48.24 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+-+..++++|+||.||||+|+.+++.+.
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999999875
No 487
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.12 E-value=0.94 Score=43.79 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..-++++|+|||||||+.+.++..+..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 467899999999999999999987764
No 488
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.12 E-value=0.071 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++..++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 358899999999999999999987654
No 489
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.12 E-value=0.07 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.601 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.|++||||+.+++....
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6889999999999999997543
No 490
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.11 E-value=0.07 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.-|+++|+||+|||++|+.+++.+.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4688999999999999999998764
No 491
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.09 E-value=0.11 Score=52.00 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=28.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D 301 (403)
..+.|+++|+||+|||.+|-.+++++..+ .++.++.-
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 36899999999999999999999998754 46776554
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.09 E-value=0.071 Score=49.12 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|.+||||||+.+.++..++ ..+-+.++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 59 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 468999999999999999999987653 23344453
No 493
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.06 E-value=0.069 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.+++||||+++++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 688999999999999999865
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.04 E-value=0.08 Score=49.07 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358999999999999999999987643
No 495
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.03 E-value=0.45 Score=45.52 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=52.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
++.=+++.|.||.|||++|..+..++-.+ ....+..-+++.+|... ++. .... ..+...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~-----------~~~--~~~~----~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA-----------FDE--GRLE----EKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-----------Hhc--CchH----HHHHHHhh
Confidence 46678899999999999998887766532 35566666666666410 000 0000 11112236
Q ss_pred CCCeEEEeCCCC---CHHHHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNV---FKSARKRKLRLFVN 368 (403)
Q Consensus 343 ~g~~vIlD~Tn~---~~~~R~~~~~~~~~ 368 (403)
+=...|||.-.. ++..+.-+++.+..
T Consensus 167 ~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred cCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 677899998544 34446666665544
No 496
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.02 E-value=0.11 Score=50.30 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=25.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEE
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL 297 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ 297 (403)
..=++++|++|+|||++++.+.+.++...+++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~ 64 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLV 64 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccce
Confidence 35578999999999999999998877655443
No 497
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.01 E-value=0.074 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-.+|+++|++||||||+.+.++...
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 498
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.00 E-value=0.08 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++..++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 368999999999999999999987654
No 499
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.00 E-value=0.071 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|.++|.|++||||+.+++...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 678999999999999999754
No 500
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.08 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|.+||||||+.+.++.-++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999987654
Done!