Query 015668
Match_columns 403
No_of_seqs 282 out of 1838
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 100.0 6E-38 2.1E-42 290.4 19.2 175 42-249 11-194 (213)
2 2yyo_A SPRY domain-containing 100.0 3.5E-36 1.2E-40 269.3 16.1 160 47-238 3-169 (171)
3 3emw_A SPRY domain-containing 99.9 5.8E-24 2E-28 197.0 15.7 157 41-230 41-214 (217)
4 2jk9_A SPRY domain-containing 99.9 1.4E-23 4.7E-28 193.9 15.8 157 41-230 30-205 (212)
5 2afj_A Gene rich cluster, C9 g 99.9 6.4E-22 2.2E-26 184.5 13.4 160 41-233 38-214 (226)
6 1ly1_A Polynucleotide kinase; 99.6 4.8E-14 1.7E-18 124.5 14.4 120 266-392 2-128 (181)
7 3zvl_A Bifunctional polynucleo 99.4 4.6E-13 1.6E-17 135.3 12.7 105 262-393 254-360 (416)
8 1ltq_A Polynucleotide kinase; 99.4 1.6E-12 5.6E-17 124.8 15.5 121 266-391 2-127 (301)
9 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 1.7E-12 5.7E-17 122.9 9.9 117 265-393 3-123 (260)
10 2rhm_A Putative kinase; P-loop 99.3 6.9E-12 2.4E-16 112.0 12.7 119 265-392 4-127 (193)
11 1gvn_B Zeta; postsegregational 99.3 3.2E-12 1.1E-16 122.9 10.7 132 265-399 32-174 (287)
12 2p5t_B PEZT; postsegregational 99.3 9.4E-12 3.2E-16 117.1 11.4 125 264-392 30-159 (253)
13 2axn_A 6-phosphofructo-2-kinas 99.3 3.1E-11 1.1E-15 125.2 15.8 129 264-392 33-170 (520)
14 1qhx_A CPT, protein (chloramph 99.3 2.5E-11 8.6E-16 107.1 12.5 120 266-391 3-134 (178)
15 1tev_A UMP-CMP kinase; ploop, 99.1 9.7E-10 3.3E-14 97.7 15.4 120 266-392 3-136 (196)
16 2wl1_A Pyrin, marenostrin; amy 99.1 1.1E-09 3.9E-14 98.9 14.2 145 43-222 14-174 (191)
17 3lw7_A Adenylate kinase relate 99.1 6.5E-10 2.2E-14 96.7 11.5 118 267-392 2-124 (179)
18 2vli_A Antibiotic resistance p 99.1 5.2E-10 1.8E-14 98.9 10.7 116 266-391 5-126 (183)
19 1qf9_A UMP/CMP kinase, protein 99.1 1.9E-09 6.4E-14 95.7 14.3 121 265-392 5-133 (194)
20 2vok_A 52 kDa RO protein; poly 99.1 1.8E-09 6.1E-14 97.3 14.2 145 42-222 9-170 (188)
21 2fbe_A Predicted: similar to R 99.1 3.1E-09 1E-13 96.8 15.2 146 43-222 11-171 (201)
22 1knq_A Gluconate kinase; ALFA/ 99.1 1.9E-09 6.4E-14 94.9 13.3 112 265-391 7-125 (175)
23 2yvu_A Probable adenylyl-sulfa 99.0 2.7E-09 9.1E-14 95.0 14.2 116 265-389 12-132 (186)
24 3t61_A Gluconokinase; PSI-biol 99.0 7.3E-10 2.5E-14 100.0 10.0 110 266-392 18-133 (202)
25 2c95_A Adenylate kinase 1; tra 99.0 3.7E-09 1.3E-13 94.2 13.3 118 265-391 8-134 (196)
26 1bif_A 6-phosphofructo-2-kinas 99.0 3.7E-09 1.3E-13 108.2 14.4 127 265-391 38-173 (469)
27 4eun_A Thermoresistant glucoki 99.0 2.8E-09 9.5E-14 96.3 12.0 112 265-392 28-147 (200)
28 3dl0_A Adenylate kinase; phosp 99.0 4.7E-09 1.6E-13 95.5 12.9 116 268-390 2-127 (216)
29 2bwj_A Adenylate kinase 5; pho 99.0 4.8E-09 1.7E-13 93.7 12.6 118 266-392 12-138 (199)
30 4gp7_A Metallophosphoesterase; 99.0 2.6E-09 9E-14 94.3 10.7 113 265-391 8-122 (171)
31 3fb4_A Adenylate kinase; psych 99.0 5.4E-09 1.9E-13 95.1 12.9 116 268-390 2-127 (216)
32 3uv9_A TRIM5alpha, tripartite 99.0 8.9E-09 3E-13 92.6 13.8 140 43-222 13-173 (186)
33 3cm0_A Adenylate kinase; ATP-b 99.0 5.2E-09 1.8E-13 92.7 12.1 116 266-391 4-127 (186)
34 2cdn_A Adenylate kinase; phosp 98.9 1.3E-08 4.6E-13 91.6 13.9 121 264-392 18-149 (201)
35 1ukz_A Uridylate kinase; trans 98.9 2.4E-08 8.1E-13 89.9 15.2 119 264-391 13-142 (203)
36 3tlx_A Adenylate kinase 2; str 98.9 1.7E-08 5.7E-13 94.3 14.5 121 264-391 27-157 (243)
37 1m7g_A Adenylylsulfate kinase; 98.9 7.3E-09 2.5E-13 94.3 11.3 114 265-387 24-149 (211)
38 2xb4_A Adenylate kinase; ATP-b 98.9 1.2E-08 4.2E-13 93.8 12.9 117 268-391 2-127 (223)
39 3kb5_A Tripartite motif-contai 98.9 3.6E-08 1.2E-12 89.1 15.3 145 43-221 13-178 (193)
40 1aky_A Adenylate kinase; ATP:A 98.9 1.7E-08 5.7E-13 92.3 12.3 119 266-391 4-133 (220)
41 3uie_A Adenylyl-sulfate kinase 98.9 1.3E-08 4.5E-13 91.8 11.5 114 264-387 23-140 (200)
42 1x6v_B Bifunctional 3'-phospho 98.9 1.3E-08 4.4E-13 107.2 12.7 115 265-388 51-170 (630)
43 3sr0_A Adenylate kinase; phosp 98.8 2.5E-08 8.7E-13 91.0 12.9 116 268-391 2-125 (206)
44 3be4_A Adenylate kinase; malar 98.8 2.3E-08 7.8E-13 91.4 12.4 118 266-391 5-133 (217)
45 1m8p_A Sulfate adenylyltransfe 98.8 3.3E-08 1.1E-12 103.5 14.4 116 264-388 394-514 (573)
46 2bdt_A BH3686; alpha-beta prot 98.8 1E-07 3.5E-12 84.8 13.5 118 267-392 3-124 (189)
47 3umf_A Adenylate kinase; rossm 98.8 7.9E-08 2.7E-12 88.5 13.0 120 262-392 25-155 (217)
48 2ze6_A Isopentenyl transferase 98.7 2.9E-08 1E-12 93.3 9.3 119 267-400 2-150 (253)
49 1ak2_A Adenylate kinase isoenz 98.7 1.3E-07 4.4E-12 87.4 12.6 120 265-391 15-144 (233)
50 3vaa_A Shikimate kinase, SK; s 98.7 5.4E-08 1.8E-12 87.7 9.7 112 265-388 24-136 (199)
51 2gks_A Bifunctional SAT/APS ki 98.7 3.6E-08 1.2E-12 102.7 9.7 114 265-388 371-488 (546)
52 2plr_A DTMP kinase, probable t 98.6 1.7E-07 5.7E-12 84.3 11.7 123 266-391 4-144 (213)
53 1zd8_A GTP:AMP phosphotransfer 98.6 2.2E-07 7.7E-12 85.2 12.2 117 265-391 6-129 (227)
54 3kb2_A SPBC2 prophage-derived 98.6 1.6E-07 5.5E-12 81.5 10.6 97 267-391 2-116 (173)
55 3trf_A Shikimate kinase, SK; a 98.6 1.1E-07 3.9E-12 84.0 9.6 107 266-387 5-115 (185)
56 2pez_A Bifunctional 3'-phospho 98.6 4E-07 1.4E-11 80.2 13.1 116 265-389 4-124 (179)
57 2pbr_A DTMP kinase, thymidylat 98.6 2.3E-07 7.7E-12 82.2 10.8 118 268-391 2-144 (195)
58 1e6c_A Shikimate kinase; phosp 98.6 4.2E-07 1.4E-11 79.2 12.1 108 267-390 3-116 (173)
59 1e4v_A Adenylate kinase; trans 98.5 1.8E-07 6.2E-12 85.0 8.1 112 268-391 2-124 (214)
60 1nks_A Adenylate kinase; therm 98.5 1.8E-07 6E-12 82.8 7.7 116 267-389 2-136 (194)
61 2iyv_A Shikimate kinase, SK; t 98.5 2E-07 6.9E-12 82.4 7.7 38 267-307 3-40 (184)
62 2pt5_A Shikimate kinase, SK; a 98.5 1.8E-07 6.3E-12 81.2 7.0 106 268-391 2-114 (168)
63 2z0h_A DTMP kinase, thymidylat 98.5 4.8E-07 1.6E-11 80.5 9.5 116 268-391 2-143 (197)
64 4eaq_A DTMP kinase, thymidylat 98.5 1.1E-06 3.7E-11 81.3 12.2 122 264-392 24-171 (229)
65 1zak_A Adenylate kinase; ATP:A 98.5 3.2E-07 1.1E-11 83.8 8.5 114 265-391 4-130 (222)
66 1kht_A Adenylate kinase; phosp 98.4 2.4E-07 8.3E-12 81.8 6.3 39 266-304 3-43 (192)
67 1y63_A LMAJ004144AAA protein; 98.4 6.4E-07 2.2E-11 79.6 8.8 110 265-391 9-122 (184)
68 4b3n_A Maltose-binding peripla 98.4 1.1E-06 3.8E-11 92.5 11.4 121 43-181 411-566 (602)
69 2qor_A Guanylate kinase; phosp 98.4 1E-06 3.5E-11 79.5 9.4 109 265-392 11-149 (204)
70 3iij_A Coilin-interacting nucl 98.4 2.7E-07 9.1E-12 81.4 5.1 106 265-391 10-118 (180)
71 1via_A Shikimate kinase; struc 98.4 3.7E-07 1.3E-11 80.2 5.9 107 267-390 5-113 (175)
72 1zp6_A Hypothetical protein AT 98.4 2.6E-06 8.9E-11 75.4 11.4 118 265-391 8-127 (191)
73 3gmt_A Adenylate kinase; ssgci 98.3 4.4E-06 1.5E-10 77.3 12.3 111 269-391 11-132 (230)
74 1nn5_A Similar to deoxythymidy 98.3 9.2E-07 3.1E-11 79.7 7.5 120 265-390 8-150 (215)
75 1zuh_A Shikimate kinase; alpha 98.3 1.1E-06 3.7E-11 76.5 7.3 41 264-307 5-45 (168)
76 1kag_A SKI, shikimate kinase I 98.3 2.6E-06 8.9E-11 74.2 9.6 39 266-307 4-42 (173)
77 3cr8_A Sulfate adenylyltranfer 98.3 5.6E-06 1.9E-10 86.2 12.8 115 265-388 368-487 (552)
78 2wwf_A Thymidilate kinase, put 98.2 7.2E-07 2.5E-11 80.3 4.0 120 265-390 9-151 (212)
79 2e63_A KIAA1787 protein; struc 98.2 4.3E-05 1.5E-09 67.4 15.3 145 50-228 12-167 (170)
80 4edh_A DTMP kinase, thymidylat 98.2 1.1E-05 3.7E-10 73.9 11.7 121 266-391 6-153 (213)
81 2f6r_A COA synthase, bifunctio 98.2 9.9E-06 3.4E-10 77.1 11.0 39 264-306 73-111 (281)
82 2if2_A Dephospho-COA kinase; a 98.1 7.3E-06 2.5E-10 73.4 8.5 37 267-307 2-38 (204)
83 1gtv_A TMK, thymidylate kinase 98.1 5.1E-07 1.7E-11 81.5 0.7 123 268-392 2-155 (214)
84 1uf9_A TT1252 protein; P-loop, 98.1 9.7E-06 3.3E-10 72.2 8.3 38 265-306 7-44 (203)
85 3lv8_A DTMP kinase, thymidylat 98.0 2.5E-05 8.7E-10 72.5 11.2 122 266-391 27-176 (236)
86 2grj_A Dephospho-COA kinase; T 98.0 1.2E-05 4.1E-10 72.3 8.6 40 264-306 10-49 (192)
87 2jaq_A Deoxyguanosine kinase; 98.0 4.5E-05 1.5E-09 67.7 12.1 24 268-291 2-25 (205)
88 3a8t_A Adenylate isopentenyltr 98.0 3.1E-05 1.1E-09 75.5 11.8 35 266-303 40-74 (339)
89 1ex7_A Guanylate kinase; subst 98.0 1.7E-05 5.8E-10 71.1 8.6 26 267-292 2-27 (186)
90 4tmk_A Protein (thymidylate ki 98.0 5E-05 1.7E-09 69.4 11.9 122 266-391 3-154 (213)
91 1uj2_A Uridine-cytidine kinase 98.0 6.9E-06 2.3E-10 76.6 6.2 40 265-304 21-67 (252)
92 1vht_A Dephospho-COA kinase; s 98.0 4.4E-05 1.5E-09 69.1 10.8 38 266-307 4-41 (218)
93 3tau_A Guanylate kinase, GMP k 97.9 7.3E-06 2.5E-10 74.2 5.2 27 265-291 7-33 (208)
94 4hlc_A DTMP kinase, thymidylat 97.9 0.00017 5.8E-09 65.4 13.9 120 267-392 3-147 (205)
95 1jjv_A Dephospho-COA kinase; P 97.9 4.2E-05 1.4E-09 68.6 9.6 36 267-306 3-38 (206)
96 3nwj_A ATSK2; P loop, shikimat 97.9 3.1E-05 1E-09 72.6 8.9 110 266-389 48-161 (250)
97 2v54_A DTMP kinase, thymidylat 97.9 8.1E-05 2.8E-09 66.2 10.8 26 266-291 4-29 (204)
98 1p5z_B DCK, deoxycytidine kina 97.8 8.9E-06 3E-10 76.3 3.5 34 264-299 22-55 (263)
99 3tr0_A Guanylate kinase, GMP k 97.8 7.4E-05 2.5E-09 66.6 9.3 27 265-291 6-32 (205)
100 2bbw_A Adenylate kinase 4, AK4 97.8 4.9E-05 1.7E-09 70.4 8.3 36 266-304 27-62 (246)
101 3v9p_A DTMP kinase, thymidylat 97.8 3E-05 1E-09 71.7 6.7 123 265-391 24-173 (227)
102 3a00_A Guanylate kinase, GMP k 97.8 2.2E-05 7.6E-10 69.6 5.5 25 267-291 2-26 (186)
103 4i1u_A Dephospho-COA kinase; s 97.7 0.0003 1E-08 64.1 11.3 40 264-307 7-46 (210)
104 3fdi_A Uncharacterized protein 97.6 0.0002 6.8E-09 64.6 9.7 114 267-391 7-138 (201)
105 3hjn_A DTMP kinase, thymidylat 97.6 0.00047 1.6E-08 62.0 12.0 119 268-392 2-144 (197)
106 2j41_A Guanylate kinase; GMP, 97.6 0.00012 4E-09 65.3 7.2 25 266-290 6-30 (207)
107 3hdt_A Putative kinase; struct 97.6 0.00045 1.6E-08 63.4 11.2 43 266-311 14-56 (223)
108 1s96_A Guanylate kinase, GMP k 97.6 0.00013 4.5E-09 66.8 7.4 119 265-391 15-151 (219)
109 3ld9_A DTMP kinase, thymidylat 97.5 0.00019 6.4E-09 66.1 8.2 121 264-391 19-166 (223)
110 1kgd_A CASK, peripheral plasma 97.5 6.8E-05 2.3E-09 66.1 4.5 26 266-291 5-30 (180)
111 2ocp_A DGK, deoxyguanosine kin 97.4 0.00025 8.6E-09 65.3 6.9 27 266-292 2-28 (241)
112 2yue_A Protein neuralized; str 97.2 0.0028 9.6E-08 55.5 10.9 135 50-224 14-153 (168)
113 1cke_A CK, MSSA, protein (cyti 97.1 0.00026 8.9E-09 64.1 4.0 37 266-305 5-41 (227)
114 3tmk_A Thymidylate kinase; pho 97.1 0.00044 1.5E-08 63.2 5.3 117 266-389 5-146 (216)
115 3ch4_B Pmkase, phosphomevalona 97.1 0.0028 9.7E-08 57.2 10.4 117 266-387 11-144 (202)
116 3ake_A Cytidylate kinase; CMP 97.1 0.00028 9.6E-09 62.8 3.5 37 268-307 4-40 (208)
117 2qt1_A Nicotinamide riboside k 97.1 0.00047 1.6E-08 61.7 4.8 38 264-303 19-56 (207)
118 3ec2_A DNA replication protein 97.0 0.0011 3.8E-08 57.8 7.1 94 266-377 38-139 (180)
119 3r20_A Cytidylate kinase; stru 97.0 0.00038 1.3E-08 64.4 4.0 40 265-307 8-47 (233)
120 3crm_A TRNA delta(2)-isopenten 97.0 0.00033 1.1E-08 67.9 3.8 35 266-303 5-39 (323)
121 3ney_A 55 kDa erythrocyte memb 96.9 0.00097 3.3E-08 60.1 5.8 27 265-291 18-44 (197)
122 1jbk_A CLPB protein; beta barr 96.9 0.0039 1.3E-07 53.6 9.4 25 266-290 43-67 (195)
123 3lnc_A Guanylate kinase, GMP k 96.8 0.00048 1.6E-08 62.9 2.7 26 265-290 26-52 (231)
124 2vp4_A Deoxynucleoside kinase; 96.8 0.00072 2.5E-08 61.9 3.9 36 264-301 18-53 (230)
125 3d3q_A TRNA delta(2)-isopenten 96.8 0.0008 2.7E-08 65.7 4.4 34 267-303 8-41 (340)
126 1q3t_A Cytidylate kinase; nucl 96.8 0.00087 3E-08 61.5 4.3 40 264-306 14-53 (236)
127 2h92_A Cytidylate kinase; ross 96.8 0.00087 3E-08 60.3 4.2 38 266-306 3-40 (219)
128 4e22_A Cytidylate kinase; P-lo 96.8 0.0011 3.9E-08 61.6 5.0 38 266-306 27-64 (252)
129 3t15_A Ribulose bisphosphate c 96.7 0.0028 9.4E-08 60.3 7.2 40 264-304 34-73 (293)
130 3foz_A TRNA delta(2)-isopenten 96.7 0.0012 4.2E-08 63.6 4.7 35 265-302 9-43 (316)
131 2p65_A Hypothetical protein PF 96.6 0.0038 1.3E-07 53.7 7.1 25 266-290 43-67 (187)
132 3cf0_A Transitional endoplasmi 96.6 0.01 3.5E-07 56.4 10.3 42 265-307 48-89 (301)
133 3exa_A TRNA delta(2)-isopenten 96.5 0.0015 5.1E-08 63.0 4.1 35 266-303 3-37 (322)
134 1vma_A Cell division protein F 96.5 0.0035 1.2E-07 60.2 6.6 39 264-302 102-142 (306)
135 3syl_A Protein CBBX; photosynt 96.5 0.0065 2.2E-07 57.4 8.1 38 265-302 66-109 (309)
136 1rz3_A Hypothetical protein rb 96.4 0.0023 7.8E-08 57.2 4.3 40 264-303 20-61 (201)
137 1l8q_A Chromosomal replication 96.4 0.0059 2E-07 58.4 7.3 40 266-305 37-78 (324)
138 4a1f_A DNAB helicase, replicat 96.3 0.02 6.7E-07 55.8 10.3 104 266-378 46-163 (338)
139 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0044 1.5E-07 59.7 5.3 36 266-301 45-80 (322)
140 3c8u_A Fructokinase; YP_612366 96.1 0.0032 1.1E-07 56.5 3.7 28 264-291 20-47 (208)
141 2z4s_A Chromosomal replication 96.1 0.015 5.1E-07 58.6 9.0 39 266-304 130-172 (440)
142 1c9k_A COBU, adenosylcobinamid 96.1 0.003 1E-07 56.1 3.2 31 268-300 1-31 (180)
143 3tqc_A Pantothenate kinase; bi 96.1 0.0047 1.6E-07 59.8 4.8 41 263-303 89-133 (321)
144 1p6x_A Thymidine kinase; P-loo 96.0 0.0057 2E-07 59.5 5.1 27 266-292 7-33 (334)
145 3co5_A Putative two-component 96.0 0.0089 3E-07 50.3 5.7 31 268-300 29-59 (143)
146 1odf_A YGR205W, hypothetical 3 95.9 0.0026 8.9E-08 60.6 2.2 39 264-302 29-72 (290)
147 3eie_A Vacuolar protein sortin 95.9 0.0081 2.8E-07 57.7 5.6 38 266-304 51-88 (322)
148 1a7j_A Phosphoribulokinase; tr 95.9 0.003 1E-07 60.1 2.5 38 266-303 5-44 (290)
149 3asz_A Uridine kinase; cytidin 95.9 0.0046 1.6E-07 55.1 3.5 37 265-302 5-41 (211)
150 3h4m_A Proteasome-activating n 95.9 0.0095 3.2E-07 55.6 5.9 35 266-301 51-85 (285)
151 3eph_A TRNA isopentenyltransfe 95.9 0.0044 1.5E-07 61.7 3.7 33 267-302 3-35 (409)
152 1g8f_A Sulfate adenylyltransfe 95.8 0.0049 1.7E-07 63.4 3.8 28 265-292 394-421 (511)
153 4b4t_J 26S protease regulatory 95.8 0.0061 2.1E-07 60.7 4.3 37 265-302 181-217 (405)
154 2zan_A Vacuolar protein sortin 95.8 0.012 4.2E-07 59.2 6.5 40 266-305 167-206 (444)
155 1lvg_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 54.4 3.7 25 266-290 4-28 (198)
156 1sq5_A Pantothenate kinase; P- 95.7 0.0077 2.6E-07 57.6 4.7 39 264-302 78-120 (308)
157 3b9p_A CG5977-PA, isoform A; A 95.7 0.0091 3.1E-07 56.1 5.1 35 266-301 54-88 (297)
158 2qmh_A HPR kinase/phosphorylas 95.7 0.007 2.4E-07 54.6 3.9 33 266-302 34-66 (205)
159 2qp9_X Vacuolar protein sortin 95.7 0.014 4.7E-07 57.0 6.3 38 266-304 84-121 (355)
160 2w58_A DNAI, primosome compone 95.6 0.008 2.7E-07 53.2 4.0 41 267-307 55-97 (202)
161 2cvh_A DNA repair and recombin 95.6 0.0051 1.7E-07 54.9 2.7 35 266-301 20-54 (220)
162 1ixz_A ATP-dependent metallopr 95.5 0.011 3.8E-07 54.3 4.9 32 269-301 52-83 (254)
163 4b4t_H 26S protease regulatory 95.5 0.0071 2.4E-07 61.2 3.5 37 265-302 242-278 (467)
164 4b4t_L 26S protease subunit RP 95.5 0.0085 2.9E-07 60.4 3.9 37 265-302 214-250 (437)
165 4b4t_K 26S protease regulatory 95.4 0.0087 3E-07 60.2 3.9 37 265-302 205-241 (428)
166 2qby_B CDC6 homolog 3, cell di 95.4 0.036 1.2E-06 53.7 8.3 26 265-290 44-69 (384)
167 4b4t_M 26S protease regulatory 95.4 0.0075 2.6E-07 60.7 3.4 37 265-302 214-250 (434)
168 2q6t_A DNAB replication FORK h 95.4 0.075 2.6E-06 53.4 10.8 36 266-301 200-238 (444)
169 1fnn_A CDC6P, cell division co 95.4 0.091 3.1E-06 50.7 10.9 33 267-299 45-80 (389)
170 3uk6_A RUVB-like 2; hexameric 95.3 0.055 1.9E-06 52.2 9.3 34 266-299 70-104 (368)
171 4b4t_I 26S protease regulatory 95.3 0.0097 3.3E-07 59.7 3.9 37 265-302 215-251 (437)
172 3cf2_A TER ATPase, transitiona 95.3 0.018 6.3E-07 62.2 6.2 40 264-304 236-275 (806)
173 4a74_A DNA repair and recombin 95.3 0.0092 3.1E-07 53.5 3.3 25 265-289 24-48 (231)
174 1iy2_A ATP-dependent metallopr 95.3 0.015 5.2E-07 54.4 4.9 32 269-301 76-107 (278)
175 2r6a_A DNAB helicase, replicat 95.3 0.06 2.1E-06 54.2 9.6 37 265-301 202-241 (454)
176 2x8a_A Nuclear valosin-contain 95.2 0.013 4.6E-07 55.0 4.3 30 269-299 47-76 (274)
177 1of1_A Thymidine kinase; trans 95.2 0.12 3.9E-06 51.0 11.1 32 265-296 48-79 (376)
178 1znw_A Guanylate kinase, GMP k 95.2 0.011 3.9E-07 52.7 3.6 28 264-291 18-45 (207)
179 2ehv_A Hypothetical protein PH 95.2 0.0092 3.2E-07 54.2 3.0 23 265-287 29-51 (251)
180 2jeo_A Uridine-cytidine kinase 95.2 0.012 4E-07 54.1 3.7 27 265-291 24-50 (245)
181 1htw_A HI0065; nucleotide-bind 95.2 0.013 4.3E-07 50.7 3.6 34 265-298 32-65 (158)
182 3pvs_A Replication-associated 95.1 0.056 1.9E-06 54.5 8.9 33 266-299 50-82 (447)
183 3d8b_A Fidgetin-like protein 1 95.1 0.026 9E-07 55.0 6.3 36 265-301 116-151 (357)
184 1xjc_A MOBB protein homolog; s 95.1 0.0093 3.2E-07 52.3 2.7 26 266-291 4-29 (169)
185 3aez_A Pantothenate kinase; tr 95.1 0.013 4.5E-07 56.3 3.9 39 264-302 88-130 (312)
186 1nij_A Hypothetical protein YJ 95.1 0.019 6.4E-07 55.2 4.9 35 265-299 3-37 (318)
187 1ye8_A Protein THEP1, hypothet 95.1 0.012 4.1E-07 51.7 3.2 50 341-390 97-152 (178)
188 3bh0_A DNAB-like replicative h 95.0 0.05 1.7E-06 52.1 7.8 37 265-301 67-105 (315)
189 3bos_A Putative DNA replicatio 95.0 0.012 4.1E-07 52.8 3.3 39 266-304 52-92 (242)
190 2kjq_A DNAA-related protein; s 95.0 0.011 3.9E-07 50.3 2.9 26 265-290 35-60 (149)
191 1z6g_A Guanylate kinase; struc 95.0 0.011 3.8E-07 53.5 3.0 27 265-291 22-48 (218)
192 3vfd_A Spastin; ATPase, microt 95.0 0.031 1.1E-06 55.0 6.4 36 266-302 148-183 (389)
193 3czq_A Putative polyphosphate 95.0 0.035 1.2E-06 53.1 6.3 107 265-391 85-212 (304)
194 1iqp_A RFCS; clamp loader, ext 95.0 0.035 1.2E-06 52.3 6.5 22 269-290 49-70 (327)
195 3b9q_A Chloroplast SRP recepto 94.9 0.014 4.8E-07 55.8 3.6 39 264-302 98-138 (302)
196 3e70_C DPA, signal recognition 94.9 0.015 5.2E-07 56.3 3.8 38 264-301 127-166 (328)
197 3dm5_A SRP54, signal recogniti 94.9 0.012 4.2E-07 59.3 3.2 38 265-302 99-138 (443)
198 1rj9_A FTSY, signal recognitio 94.9 0.015 5E-07 55.8 3.5 37 265-301 101-139 (304)
199 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.013 4.4E-07 52.4 3.0 36 266-301 23-60 (235)
200 1lv7_A FTSH; alpha/beta domain 94.9 0.013 4.4E-07 54.0 3.0 34 266-300 45-78 (257)
201 2ce7_A Cell division protein F 94.9 0.021 7E-07 58.2 4.7 36 266-302 49-84 (476)
202 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.021 7E-07 52.4 4.3 34 266-300 39-72 (262)
203 3iev_A GTP-binding protein ERA 94.8 0.23 7.8E-06 47.2 11.8 26 264-289 8-33 (308)
204 3n70_A Transport activator; si 94.7 0.015 5.1E-07 48.9 2.9 24 268-291 26-49 (145)
205 3kl4_A SRP54, signal recogniti 94.7 0.013 4.4E-07 59.0 2.8 37 265-301 96-134 (433)
206 1in4_A RUVB, holliday junction 94.6 0.014 4.7E-07 56.4 2.7 26 266-291 51-76 (334)
207 1n0w_A DNA repair protein RAD5 94.6 0.015 5.3E-07 52.5 2.9 37 265-301 23-67 (243)
208 1njg_A DNA polymerase III subu 94.6 0.017 5.9E-07 51.2 3.1 26 266-291 45-70 (250)
209 2og2_A Putative signal recogni 94.6 0.019 6.4E-07 56.4 3.6 39 264-302 155-195 (359)
210 2px0_A Flagellar biosynthesis 94.6 0.021 7.2E-07 54.4 3.8 38 265-302 104-144 (296)
211 2dr3_A UPF0273 protein PH0284; 94.6 0.018 6.3E-07 52.0 3.2 36 266-301 23-60 (247)
212 1d2n_A N-ethylmaleimide-sensit 94.5 0.033 1.1E-06 51.7 5.0 35 264-299 62-96 (272)
213 1ofh_A ATP-dependent HSL prote 94.5 0.021 7E-07 53.6 3.6 34 266-300 50-83 (310)
214 3bgw_A DNAB-like replicative h 94.4 0.074 2.5E-06 53.6 7.6 37 265-301 196-234 (444)
215 1cr0_A DNA primase/helicase; R 94.4 0.019 6.4E-07 54.2 3.0 36 265-300 34-72 (296)
216 1np6_A Molybdopterin-guanine d 94.4 0.023 7.8E-07 49.9 3.2 26 266-291 6-31 (174)
217 3m6a_A ATP-dependent protease 94.4 0.025 8.5E-07 58.6 4.0 37 265-302 107-143 (543)
218 3hws_A ATP-dependent CLP prote 94.3 0.033 1.1E-06 54.2 4.6 34 266-300 51-84 (363)
219 2r2a_A Uncharacterized protein 94.3 0.024 8.4E-07 50.8 3.4 25 265-289 4-28 (199)
220 2i3b_A HCR-ntpase, human cance 94.3 0.017 5.9E-07 51.3 2.3 24 267-290 2-25 (189)
221 1q57_A DNA primase/helicase; d 94.3 0.078 2.7E-06 54.0 7.6 37 265-301 241-280 (503)
222 2chg_A Replication factor C sm 94.2 0.023 8E-07 49.8 3.1 22 269-290 41-62 (226)
223 2j37_W Signal recognition part 94.2 0.023 7.9E-07 58.3 3.4 38 264-301 99-138 (504)
224 1g41_A Heat shock protein HSLU 94.2 0.032 1.1E-06 56.3 4.3 34 266-300 50-83 (444)
225 1zu4_A FTSY; GTPase, signal re 94.2 0.026 8.8E-07 54.5 3.5 39 264-302 103-143 (320)
226 3tqf_A HPR(Ser) kinase; transf 94.1 0.029 9.8E-07 49.4 3.3 33 266-302 16-48 (181)
227 1dek_A Deoxynucleoside monopho 94.1 0.054 1.8E-06 50.1 5.3 37 267-306 2-39 (241)
228 1qvr_A CLPB protein; coiled co 94.1 0.1 3.6E-06 56.8 8.4 23 268-290 193-215 (854)
229 2xxa_A Signal recognition part 94.0 0.031 1.1E-06 56.2 3.8 38 264-301 98-138 (433)
230 1nlf_A Regulatory protein REPA 94.0 0.024 8.3E-07 53.0 2.9 24 265-288 29-52 (279)
231 3hu3_A Transitional endoplasmi 94.0 0.066 2.3E-06 54.6 6.3 39 266-305 238-276 (489)
232 2bjv_A PSP operon transcriptio 94.0 0.039 1.3E-06 50.9 4.2 34 267-300 30-65 (265)
233 1um8_A ATP-dependent CLP prote 94.0 0.038 1.3E-06 54.0 4.2 32 267-299 73-104 (376)
234 2eyu_A Twitching motility prot 94.0 0.031 1.1E-06 52.2 3.5 26 265-290 24-49 (261)
235 1tue_A Replication protein E1; 94.0 0.022 7.4E-07 51.6 2.2 26 267-292 59-84 (212)
236 2yhs_A FTSY, cell division pro 93.9 0.03 1E-06 57.2 3.5 39 264-302 291-331 (503)
237 2v3c_C SRP54, signal recogniti 93.9 0.021 7.2E-07 57.4 2.3 39 264-302 97-137 (432)
238 2qgz_A Helicase loader, putati 93.9 0.037 1.3E-06 52.9 3.8 43 266-308 152-197 (308)
239 3tif_A Uncharacterized ABC tra 93.8 0.029 1E-06 51.5 2.9 35 265-299 30-65 (235)
240 1svm_A Large T antigen; AAA+ f 93.8 0.032 1.1E-06 55.0 3.4 28 265-292 168-195 (377)
241 2ghi_A Transport protein; mult 93.7 0.046 1.6E-06 51.0 4.1 35 265-299 45-79 (260)
242 3pfi_A Holliday junction ATP-d 93.7 0.048 1.7E-06 52.1 4.3 33 267-300 56-88 (338)
243 2f1r_A Molybdopterin-guanine d 93.7 0.019 6.4E-07 50.3 1.2 26 266-291 2-27 (171)
244 3p32_A Probable GTPase RV1496/ 93.7 0.046 1.6E-06 53.2 4.2 37 265-301 78-116 (355)
245 2ga8_A Hypothetical 39.9 kDa p 93.7 0.037 1.3E-06 54.2 3.5 26 266-291 24-49 (359)
246 2r62_A Cell division protease 93.6 0.018 6.1E-07 53.3 1.1 32 268-300 46-77 (268)
247 4fcw_A Chaperone protein CLPB; 93.6 0.039 1.3E-06 51.9 3.5 36 266-301 47-84 (311)
248 1j8m_F SRP54, signal recogniti 93.6 0.036 1.2E-06 52.8 3.2 36 266-301 98-135 (297)
249 2orw_A Thymidine kinase; TMTK, 93.6 0.038 1.3E-06 48.7 3.2 24 266-289 3-26 (184)
250 2v9p_A Replication protein E1; 93.6 0.033 1.1E-06 53.3 3.0 26 265-290 125-150 (305)
251 2pcj_A ABC transporter, lipopr 93.6 0.031 1.1E-06 50.9 2.6 35 265-299 29-64 (224)
252 3b85_A Phosphate starvation-in 93.6 0.034 1.2E-06 50.1 2.8 24 266-289 22-45 (208)
253 3czp_A Putative polyphosphate 93.5 0.081 2.8E-06 54.1 5.9 108 263-392 40-170 (500)
254 1yrb_A ATP(GTP)binding protein 93.5 0.049 1.7E-06 49.9 4.0 38 264-301 12-50 (262)
255 2onk_A Molybdate/tungstate ABC 93.5 0.037 1.3E-06 51.0 3.1 33 267-299 25-58 (240)
256 2wsm_A Hydrogenase expression/ 93.5 0.046 1.6E-06 48.7 3.6 26 265-290 29-54 (221)
257 1g8p_A Magnesium-chelatase 38 93.5 0.029 1E-06 53.7 2.5 23 269-291 48-70 (350)
258 2cbz_A Multidrug resistance-as 93.5 0.036 1.2E-06 50.9 2.9 27 265-291 30-56 (237)
259 2zts_A Putative uncharacterize 93.5 0.04 1.4E-06 49.8 3.2 36 266-301 30-68 (251)
260 1z2a_A RAS-related protein RAB 93.4 0.039 1.3E-06 46.2 2.8 24 267-290 6-29 (168)
261 2dyk_A GTP-binding protein; GT 93.4 0.04 1.4E-06 45.9 2.8 23 268-290 3-25 (161)
262 2dhr_A FTSH; AAA+ protein, hex 93.3 0.053 1.8E-06 55.5 4.1 32 268-300 66-97 (499)
263 2ce2_X GTPase HRAS; signaling 93.3 0.042 1.4E-06 45.7 2.9 23 268-290 5-27 (166)
264 1oix_A RAS-related protein RAB 93.3 0.043 1.5E-06 48.0 2.9 26 266-291 29-54 (191)
265 1kao_A RAP2A; GTP-binding prot 93.3 0.043 1.5E-06 45.7 2.9 23 268-290 5-27 (167)
266 4g1u_C Hemin import ATP-bindin 93.2 0.037 1.3E-06 51.8 2.6 48 343-390 165-217 (266)
267 1sxj_A Activator 1 95 kDa subu 93.2 0.063 2.2E-06 55.0 4.6 35 265-300 76-110 (516)
268 1v5w_A DMC1, meiotic recombina 93.2 0.071 2.4E-06 51.7 4.6 38 265-302 121-166 (343)
269 3gfo_A Cobalt import ATP-bindi 93.2 0.038 1.3E-06 52.1 2.5 35 265-299 33-68 (275)
270 1u8z_A RAS-related protein RAL 93.1 0.046 1.6E-06 45.6 2.9 23 267-289 5-27 (168)
271 1mv5_A LMRA, multidrug resista 93.1 0.049 1.7E-06 50.2 3.2 27 265-291 27-53 (243)
272 2v1u_A Cell division control p 93.1 0.042 1.4E-06 53.0 2.9 26 265-290 43-68 (387)
273 1b0u_A Histidine permease; ABC 93.1 0.044 1.5E-06 51.1 2.9 34 265-298 31-65 (262)
274 1ek0_A Protein (GTP-binding pr 93.0 0.049 1.7E-06 45.6 2.9 23 268-290 5-27 (170)
275 2d2e_A SUFC protein; ABC-ATPas 93.0 0.048 1.6E-06 50.5 3.0 35 265-299 28-65 (250)
276 2olj_A Amino acid ABC transpor 93.0 0.046 1.6E-06 51.1 2.9 50 341-390 175-228 (263)
277 1z0j_A RAB-22, RAS-related pro 93.0 0.05 1.7E-06 45.6 2.9 24 267-290 7-30 (170)
278 1g6h_A High-affinity branched- 93.0 0.044 1.5E-06 51.0 2.7 35 265-299 32-67 (257)
279 2z43_A DNA repair and recombin 93.0 0.069 2.4E-06 51.2 4.2 37 266-302 107-151 (324)
280 1ji0_A ABC transporter; ATP bi 93.0 0.044 1.5E-06 50.4 2.7 35 265-299 31-66 (240)
281 2c9o_A RUVB-like 1; hexameric 93.0 0.041 1.4E-06 55.5 2.6 25 267-291 64-88 (456)
282 3rhf_A Putative polyphosphate 93.0 0.11 3.7E-06 49.2 5.3 108 265-392 74-202 (289)
283 2r44_A Uncharacterized protein 92.9 0.037 1.3E-06 52.9 2.2 26 267-292 47-72 (331)
284 1ky3_A GTP-binding protein YPT 92.9 0.051 1.7E-06 46.2 2.9 25 266-290 8-32 (182)
285 2ff7_A Alpha-hemolysin translo 92.9 0.045 1.5E-06 50.6 2.7 35 265-299 34-69 (247)
286 2f9l_A RAB11B, member RAS onco 92.9 0.051 1.8E-06 47.6 3.0 24 267-290 6-29 (199)
287 2pze_A Cystic fibrosis transme 92.9 0.046 1.6E-06 49.9 2.7 27 265-291 33-59 (229)
288 1g16_A RAS-related protein SEC 92.9 0.052 1.8E-06 45.5 2.8 23 268-290 5-27 (170)
289 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.052 1.8E-06 46.0 2.9 24 267-290 8-31 (177)
290 2qby_A CDC6 homolog 1, cell di 92.9 0.047 1.6E-06 52.5 2.9 26 265-290 44-69 (386)
291 2www_A Methylmalonic aciduria 92.9 0.062 2.1E-06 52.3 3.7 26 264-289 72-97 (349)
292 1ls1_A Signal recognition part 92.9 0.057 1.9E-06 51.3 3.4 37 265-301 97-135 (295)
293 2zu0_C Probable ATP-dependent 92.9 0.055 1.9E-06 50.6 3.2 25 265-289 45-69 (267)
294 1z08_A RAS-related protein RAB 92.8 0.053 1.8E-06 45.6 2.8 23 267-289 7-29 (170)
295 2nzj_A GTP-binding protein REM 92.8 0.053 1.8E-06 45.8 2.8 23 267-289 5-27 (175)
296 2erx_A GTP-binding protein DI- 92.8 0.053 1.8E-06 45.5 2.8 23 267-289 4-26 (172)
297 1sgw_A Putative ABC transporte 92.8 0.039 1.4E-06 50.0 2.1 35 266-300 35-70 (214)
298 1c1y_A RAS-related protein RAP 92.8 0.057 1.9E-06 45.1 3.0 22 268-289 5-26 (167)
299 2pjz_A Hypothetical protein ST 92.8 0.067 2.3E-06 50.0 3.7 34 266-299 30-63 (263)
300 2qm8_A GTPase/ATPase; G protei 92.8 0.06 2.1E-06 52.2 3.5 26 264-289 53-78 (337)
301 2hf9_A Probable hydrogenase ni 92.8 0.071 2.4E-06 47.6 3.7 26 265-290 37-62 (226)
302 2hxs_A RAB-26, RAS-related pro 92.8 0.058 2E-06 45.8 3.0 23 267-289 7-29 (178)
303 1sxj_C Activator 1 40 kDa subu 92.8 0.053 1.8E-06 52.2 3.0 23 269-291 49-71 (340)
304 2wji_A Ferrous iron transport 92.8 0.054 1.9E-06 45.9 2.8 23 267-289 4-26 (165)
305 2ged_A SR-beta, signal recogni 92.7 0.055 1.9E-06 46.8 2.9 25 266-290 48-72 (193)
306 3q85_A GTP-binding protein REM 92.7 0.056 1.9E-06 45.4 2.8 20 269-288 5-24 (169)
307 3cf2_A TER ATPase, transitiona 92.7 0.073 2.5E-06 57.6 4.3 40 266-306 511-550 (806)
308 2ixe_A Antigen peptide transpo 92.7 0.054 1.8E-06 50.9 2.9 35 265-299 44-79 (271)
309 1vpl_A ABC transporter, ATP-bi 92.7 0.054 1.9E-06 50.4 2.9 35 265-299 40-75 (256)
310 1sxj_D Activator 1 41 kDa subu 92.7 0.055 1.9E-06 51.7 3.1 22 269-290 61-82 (353)
311 1pzn_A RAD51, DNA repair and r 92.7 0.058 2E-06 52.5 3.3 26 265-290 130-155 (349)
312 2ewv_A Twitching motility prot 92.7 0.068 2.3E-06 52.5 3.7 27 265-291 135-161 (372)
313 3q72_A GTP-binding protein RAD 92.7 0.054 1.9E-06 45.4 2.7 20 269-288 5-24 (166)
314 1r2q_A RAS-related protein RAB 92.6 0.063 2.1E-06 44.9 3.0 23 267-289 7-29 (170)
315 2vhj_A Ntpase P4, P4; non- hyd 92.6 0.068 2.3E-06 51.7 3.5 23 267-289 124-146 (331)
316 1z0f_A RAB14, member RAS oncog 92.6 0.061 2.1E-06 45.5 2.9 26 265-290 14-39 (179)
317 3j16_B RLI1P; ribosome recycli 92.6 0.4 1.4E-05 50.2 9.6 51 340-390 236-290 (608)
318 2yz2_A Putative ABC transporte 92.6 0.058 2E-06 50.4 2.9 35 265-299 32-67 (266)
319 2qi9_C Vitamin B12 import ATP- 92.5 0.054 1.9E-06 50.2 2.7 35 265-299 25-59 (249)
320 2fn4_A P23, RAS-related protei 92.5 0.062 2.1E-06 45.6 2.8 24 266-289 9-32 (181)
321 2zej_A Dardarin, leucine-rich 92.5 0.054 1.8E-06 46.8 2.5 21 269-289 5-25 (184)
322 2p67_A LAO/AO transport system 92.5 0.083 2.8E-06 51.1 4.1 38 264-301 54-93 (341)
323 3con_A GTPase NRAS; structural 92.5 0.062 2.1E-06 46.3 2.9 25 266-290 21-45 (190)
324 2ihy_A ABC transporter, ATP-bi 92.5 0.055 1.9E-06 51.1 2.7 34 265-298 46-80 (279)
325 2lkc_A Translation initiation 92.5 0.061 2.1E-06 45.6 2.7 24 266-289 8-31 (178)
326 1nrj_B SR-beta, signal recogni 92.5 0.062 2.1E-06 47.6 2.9 25 266-290 12-36 (218)
327 3sop_A Neuronal-specific septi 92.4 0.059 2E-06 50.5 2.8 23 268-290 4-26 (270)
328 2gza_A Type IV secretion syste 92.4 0.053 1.8E-06 53.0 2.6 128 266-400 175-311 (361)
329 3bc1_A RAS-related protein RAB 92.4 0.068 2.3E-06 45.8 3.0 24 266-289 11-34 (195)
330 1upt_A ARL1, ADP-ribosylation 92.4 0.067 2.3E-06 44.9 2.9 24 266-289 7-30 (171)
331 2efe_B Small GTP-binding prote 92.4 0.065 2.2E-06 45.6 2.8 24 266-289 12-35 (181)
332 3clv_A RAB5 protein, putative; 92.4 0.066 2.3E-06 46.1 2.9 23 267-289 8-30 (208)
333 4dsu_A GTPase KRAS, isoform 2B 92.4 0.067 2.3E-06 45.8 2.9 24 267-290 5-28 (189)
334 1lw7_A Transcriptional regulat 92.4 0.069 2.3E-06 52.1 3.3 26 266-291 170-195 (365)
335 1r8s_A ADP-ribosylation factor 92.4 0.073 2.5E-06 44.4 3.1 22 269-290 3-24 (164)
336 1svi_A GTP-binding protein YSX 92.4 0.061 2.1E-06 46.5 2.6 24 266-289 23-46 (195)
337 1ypw_A Transitional endoplasmi 92.3 0.091 3.1E-06 57.0 4.5 36 265-301 237-272 (806)
338 2wjg_A FEOB, ferrous iron tran 92.3 0.067 2.3E-06 45.9 2.8 24 266-289 7-30 (188)
339 2nq2_C Hypothetical ABC transp 92.3 0.06 2.1E-06 50.0 2.7 27 265-291 30-56 (253)
340 1pui_A ENGB, probable GTP-bind 92.3 0.047 1.6E-06 48.0 1.8 25 266-290 26-50 (210)
341 2a9k_A RAS-related protein RAL 92.3 0.069 2.4E-06 45.5 2.9 24 266-289 18-41 (187)
342 3hr8_A Protein RECA; alpha and 92.3 0.077 2.6E-06 51.9 3.5 36 266-301 61-98 (356)
343 2gj8_A MNME, tRNA modification 92.3 0.081 2.8E-06 45.3 3.3 25 266-290 4-28 (172)
344 2g6b_A RAS-related protein RAB 92.3 0.071 2.4E-06 45.3 2.9 25 266-290 10-34 (180)
345 1m7b_A RND3/RHOE small GTP-bin 92.2 0.07 2.4E-06 45.9 2.9 23 267-289 8-30 (184)
346 2bme_A RAB4A, RAS-related prot 92.2 0.072 2.5E-06 45.6 2.9 24 266-289 10-33 (186)
347 2ffh_A Protein (FFH); SRP54, s 92.2 0.076 2.6E-06 53.2 3.4 37 265-301 97-135 (425)
348 2y8e_A RAB-protein 6, GH09086P 92.1 0.075 2.6E-06 44.9 2.9 23 267-289 15-37 (179)
349 2cxx_A Probable GTP-binding pr 92.1 0.073 2.5E-06 45.6 2.8 21 269-289 4-24 (190)
350 2oil_A CATX-8, RAS-related pro 92.1 0.074 2.5E-06 46.0 2.9 25 266-290 25-49 (193)
351 3tw8_B RAS-related protein RAB 92.1 0.071 2.4E-06 45.2 2.6 24 266-289 9-32 (181)
352 1hqc_A RUVB; extended AAA-ATPa 92.0 0.06 2.1E-06 50.9 2.4 34 266-300 38-71 (324)
353 3czp_A Putative polyphosphate 92.0 0.17 5.8E-06 51.7 5.8 107 264-392 298-427 (500)
354 1sxj_E Activator 1 40 kDa subu 92.0 0.062 2.1E-06 51.6 2.4 21 269-289 39-59 (354)
355 2zr9_A Protein RECA, recombina 92.0 0.076 2.6E-06 51.8 3.1 36 266-301 61-98 (349)
356 3pqc_A Probable GTP-binding pr 92.0 0.071 2.4E-06 45.8 2.6 24 267-290 24-47 (195)
357 3kkq_A RAS-related protein M-R 92.0 0.078 2.7E-06 45.3 2.9 24 266-289 18-41 (183)
358 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.08 2.7E-06 45.1 2.9 23 267-289 6-28 (186)
359 3kta_A Chromosome segregation 91.9 0.085 2.9E-06 45.5 3.0 23 268-290 28-50 (182)
360 1zd9_A ADP-ribosylation factor 91.9 0.096 3.3E-06 45.3 3.4 26 265-290 21-46 (188)
361 2bov_A RAla, RAS-related prote 91.9 0.08 2.7E-06 46.1 2.9 24 266-289 14-37 (206)
362 2pt7_A CAG-ALFA; ATPase, prote 91.9 0.061 2.1E-06 52.0 2.3 33 266-298 171-204 (330)
363 1r6b_X CLPA protein; AAA+, N-t 91.9 0.18 6.3E-06 53.9 6.2 25 266-290 207-231 (758)
364 3jvv_A Twitching mobility prot 91.9 0.088 3E-06 51.5 3.4 26 266-291 123-148 (356)
365 3lda_A DNA repair protein RAD5 91.8 0.075 2.6E-06 52.8 2.9 22 266-287 178-199 (400)
366 3t5g_A GTP-binding protein RHE 91.8 0.083 2.9E-06 45.0 2.8 23 266-288 6-28 (181)
367 3u61_B DNA polymerase accessor 91.8 0.093 3.2E-06 49.8 3.4 34 265-299 47-80 (324)
368 1x3s_A RAS-related protein RAB 91.8 0.086 3E-06 45.4 2.9 25 266-290 15-39 (195)
369 1p9r_A General secretion pathw 91.7 0.084 2.9E-06 52.8 3.1 27 265-291 166-192 (418)
370 2gf9_A RAS-related protein RAB 91.7 0.089 3E-06 45.4 2.9 25 266-290 22-46 (189)
371 3ihw_A Centg3; RAS, centaurin, 91.7 0.089 3E-06 45.6 2.8 25 266-290 20-44 (184)
372 2qen_A Walker-type ATPase; unk 91.6 0.14 4.7E-06 48.5 4.4 32 267-301 32-63 (350)
373 1z06_A RAS-related protein RAB 91.6 0.091 3.1E-06 45.3 2.9 25 265-289 19-43 (189)
374 2i1q_A DNA repair and recombin 91.6 0.1 3.5E-06 49.7 3.5 24 266-289 98-121 (322)
375 3dz8_A RAS-related protein RAB 91.6 0.097 3.3E-06 45.3 3.0 24 267-290 24-47 (191)
376 3tkl_A RAS-related protein RAB 91.6 0.092 3.1E-06 45.3 2.9 25 266-290 16-40 (196)
377 1jr3_A DNA polymerase III subu 91.6 0.092 3.1E-06 50.5 3.1 26 266-291 38-63 (373)
378 3t1o_A Gliding protein MGLA; G 91.6 0.11 3.6E-06 44.8 3.2 25 267-291 15-39 (198)
379 2gf0_A GTP-binding protein DI- 91.5 0.096 3.3E-06 45.3 2.9 23 267-289 9-31 (199)
380 1vg8_A RAS-related protein RAB 91.5 0.093 3.2E-06 45.8 2.9 25 266-290 8-32 (207)
381 2fg5_A RAB-22B, RAS-related pr 91.5 0.092 3.1E-06 45.6 2.8 25 266-290 23-47 (192)
382 2chq_A Replication factor C sm 91.5 0.094 3.2E-06 49.1 3.0 22 269-290 41-62 (319)
383 3fvq_A Fe(3+) IONS import ATP- 91.5 0.099 3.4E-06 51.2 3.2 49 341-390 154-208 (359)
384 2atv_A RERG, RAS-like estrogen 91.5 0.096 3.3E-06 45.6 2.9 23 267-289 29-51 (196)
385 3oes_A GTPase rhebl1; small GT 91.5 0.095 3.3E-06 45.8 2.9 25 266-290 24-48 (201)
386 1zbd_A Rabphilin-3A; G protein 91.4 0.095 3.3E-06 45.7 2.8 24 267-290 9-32 (203)
387 2h17_A ADP-ribosylation factor 91.4 0.11 3.6E-06 44.6 3.1 25 266-290 21-45 (181)
388 1m2o_B GTP-binding protein SAR 91.4 0.1 3.5E-06 45.4 2.9 22 268-289 25-46 (190)
389 3bwd_D RAC-like GTP-binding pr 91.4 0.1 3.4E-06 44.4 2.9 24 267-290 9-32 (182)
390 3c5c_A RAS-like protein 12; GD 91.4 0.12 4.1E-06 44.7 3.4 26 265-290 20-45 (187)
391 1moz_A ARL1, ADP-ribosylation 91.4 0.073 2.5E-06 45.4 2.0 23 266-288 18-40 (183)
392 1ksh_A ARF-like protein 2; sma 91.4 0.083 2.8E-06 45.4 2.3 25 266-290 18-42 (186)
393 1zj6_A ADP-ribosylation factor 91.3 0.1 3.4E-06 45.0 2.8 24 266-289 16-39 (187)
394 2iwr_A Centaurin gamma 1; ANK 91.3 0.078 2.7E-06 45.1 2.1 23 267-289 8-30 (178)
395 2a5j_A RAS-related protein RAB 91.3 0.1 3.6E-06 45.1 2.9 25 266-290 21-45 (191)
396 1u0j_A DNA replication protein 91.2 0.11 3.9E-06 48.6 3.2 25 267-291 105-129 (267)
397 2bbs_A Cystic fibrosis transme 91.2 0.1 3.4E-06 49.6 2.9 27 265-291 63-89 (290)
398 3tui_C Methionine import ATP-b 91.2 0.11 3.7E-06 51.0 3.2 35 265-299 53-88 (366)
399 3nh6_A ATP-binding cassette SU 91.2 0.071 2.4E-06 51.0 1.9 35 265-299 79-114 (306)
400 3nbx_X ATPase RAVA; AAA+ ATPas 91.2 0.08 2.7E-06 54.2 2.3 25 267-291 42-66 (500)
401 2p5s_A RAS and EF-hand domain 91.2 0.11 3.6E-06 45.5 2.8 26 265-290 27-52 (199)
402 2bcg_Y Protein YP2, GTP-bindin 91.2 0.1 3.6E-06 45.6 2.8 24 266-289 8-31 (206)
403 1fzq_A ADP-ribosylation factor 91.1 0.1 3.5E-06 45.0 2.7 25 266-290 16-40 (181)
404 3reg_A RHO-like small GTPase; 91.1 0.11 3.7E-06 45.0 2.9 25 266-290 23-47 (194)
405 1u94_A RECA protein, recombina 91.1 0.11 3.7E-06 50.8 3.1 35 266-300 63-99 (356)
406 1gwn_A RHO-related GTP-binding 91.1 0.11 3.7E-06 46.0 2.9 24 266-289 28-51 (205)
407 2b8t_A Thymidine kinase; deoxy 91.1 0.13 4.6E-06 46.8 3.5 33 266-298 12-46 (223)
408 1tf7_A KAIC; homohexamer, hexa 91.0 0.1 3.5E-06 53.5 3.0 22 265-286 38-59 (525)
409 2ew1_A RAS-related protein RAB 91.0 0.12 3.9E-06 45.8 2.9 24 266-289 26-49 (201)
410 4bas_A ADP-ribosylation factor 91.0 0.13 4.4E-06 44.5 3.2 26 264-289 15-40 (199)
411 3te6_A Regulatory protein SIR3 91.0 0.076 2.6E-06 51.2 1.8 26 265-290 44-69 (318)
412 3cbq_A GTP-binding protein REM 91.0 0.09 3.1E-06 46.1 2.2 22 266-287 23-44 (195)
413 3rlf_A Maltose/maltodextrin im 90.9 0.12 4.1E-06 51.0 3.2 49 341-390 149-203 (381)
414 1f6b_A SAR1; gtpases, N-termin 90.9 0.1 3.5E-06 45.8 2.5 21 268-288 27-47 (198)
415 2yv5_A YJEQ protein; hydrolase 90.9 0.12 4.2E-06 49.1 3.2 25 266-291 165-189 (302)
416 3cph_A RAS-related protein SEC 90.9 0.12 4E-06 45.4 2.8 24 266-289 20-43 (213)
417 2hup_A RAS-related protein RAB 90.9 0.12 4E-06 45.4 2.8 25 266-290 29-53 (201)
418 1xp8_A RECA protein, recombina 90.8 0.14 4.6E-06 50.3 3.5 36 266-301 74-111 (366)
419 2yyz_A Sugar ABC transporter, 90.8 0.12 4.3E-06 50.5 3.2 35 265-299 28-63 (359)
420 3lxx_A GTPase IMAP family memb 90.8 0.12 4E-06 46.9 2.8 25 266-290 29-53 (239)
421 1sxj_B Activator 1 37 kDa subu 90.8 0.12 4.2E-06 48.4 3.1 22 269-290 45-66 (323)
422 1z47_A CYSA, putative ABC-tran 90.8 0.12 4E-06 50.6 3.0 49 341-390 161-215 (355)
423 2fu5_C RAS-related protein RAB 90.7 0.077 2.6E-06 45.4 1.5 24 266-289 8-31 (183)
424 2fh5_B SR-beta, signal recogni 90.7 0.12 4.2E-06 45.4 2.9 25 266-290 7-31 (214)
425 2fv8_A H6, RHO-related GTP-bin 90.7 0.13 4.4E-06 45.3 2.9 24 267-290 26-49 (207)
426 2q3h_A RAS homolog gene family 90.7 0.12 4.2E-06 44.9 2.8 24 266-289 20-43 (201)
427 2o52_A RAS-related protein RAB 90.7 0.12 4.2E-06 45.2 2.8 24 266-289 25-48 (200)
428 2f7s_A C25KG, RAS-related prot 90.7 0.12 4.2E-06 45.5 2.8 25 266-290 25-49 (217)
429 2it1_A 362AA long hypothetical 90.6 0.13 4.5E-06 50.3 3.2 35 265-299 28-63 (362)
430 2rcn_A Probable GTPase ENGC; Y 90.6 0.12 4.1E-06 50.6 2.9 26 266-291 215-240 (358)
431 3gd7_A Fusion complex of cysti 90.5 0.14 4.8E-06 50.7 3.3 35 265-299 46-80 (390)
432 2il1_A RAB12; G-protein, GDP, 90.5 0.12 4.3E-06 44.8 2.7 23 267-289 27-49 (192)
433 4gzl_A RAS-related C3 botulinu 90.5 0.13 4.5E-06 45.2 2.9 24 266-289 30-53 (204)
434 3pxi_A Negative regulator of g 90.5 0.3 1E-05 52.4 6.1 37 268-304 523-561 (758)
435 1xx6_A Thymidine kinase; NESG, 90.5 0.28 9.6E-06 43.5 5.0 34 265-298 7-42 (191)
436 3pxg_A Negative regulator of g 90.5 0.13 4.3E-06 52.1 3.0 23 268-290 203-225 (468)
437 3lxw_A GTPase IMAP family memb 90.5 0.12 4.1E-06 47.5 2.6 26 265-290 20-45 (247)
438 2atx_A Small GTP binding prote 90.4 0.14 4.7E-06 44.3 2.8 24 266-289 18-41 (194)
439 2oap_1 GSPE-2, type II secreti 90.4 0.12 4E-06 53.1 2.7 33 266-298 260-293 (511)
440 2qag_B Septin-6, protein NEDD5 90.4 0.13 4.6E-06 51.4 3.1 24 266-289 40-65 (427)
441 2b6h_A ADP-ribosylation factor 90.4 0.13 4.5E-06 44.8 2.7 23 267-289 30-52 (192)
442 1ojl_A Transcriptional regulat 90.4 0.15 5E-06 48.5 3.2 33 267-299 26-60 (304)
443 2gco_A H9, RHO-related GTP-bin 90.3 0.14 4.8E-06 44.8 2.9 24 267-290 26-49 (201)
444 1v43_A Sugar-binding transport 90.3 0.15 5E-06 50.2 3.2 49 341-390 157-211 (372)
445 4f4c_A Multidrug resistance pr 90.3 0.49 1.7E-05 54.1 7.9 110 266-377 444-578 (1321)
446 2j0v_A RAC-like GTP-binding pr 90.2 0.14 4.9E-06 44.9 2.9 24 267-290 10-33 (212)
447 3k1j_A LON protease, ATP-depen 90.2 0.14 4.9E-06 53.4 3.2 26 267-292 61-86 (604)
448 1zcb_A G alpha I/13; GTP-bindi 90.2 0.13 4.3E-06 50.5 2.7 23 266-288 33-55 (362)
449 2cjw_A GTP-binding protein GEM 90.2 0.15 5E-06 44.6 2.8 23 267-289 7-29 (192)
450 1g29_1 MALK, maltose transport 90.2 0.14 4.8E-06 50.3 3.0 49 341-390 155-209 (372)
451 2j1l_A RHO-related GTP-binding 90.2 0.14 4.9E-06 45.3 2.8 24 266-289 34-57 (214)
452 2qu8_A Putative nucleolar GTP- 90.1 0.13 4.3E-06 46.2 2.4 24 266-289 29-52 (228)
453 1u0l_A Probable GTPase ENGC; p 90.0 0.14 4.7E-06 48.7 2.6 26 266-291 169-194 (301)
454 2h57_A ADP-ribosylation factor 89.9 0.13 4.4E-06 44.4 2.2 25 266-290 21-45 (190)
455 3d31_A Sulfate/molybdate ABC t 89.9 0.12 4E-06 50.5 2.1 35 265-299 25-60 (348)
456 1w5s_A Origin recognition comp 89.8 0.17 5.6E-06 49.4 3.2 26 265-290 49-76 (412)
457 2npi_A Protein CLP1; CLP1-PCF1 89.8 0.13 4.4E-06 52.1 2.4 26 265-290 137-162 (460)
458 2xtp_A GTPase IMAP family memb 89.7 0.16 5.4E-06 46.6 2.8 25 266-290 22-46 (260)
459 4dcu_A GTP-binding protein ENG 89.6 0.54 1.9E-05 47.1 6.9 24 266-289 23-46 (456)
460 3q3j_B RHO-related GTP-binding 89.6 0.17 5.9E-06 44.9 2.9 23 267-289 28-50 (214)
461 3k53_A Ferrous iron transport 89.6 0.16 5.6E-06 47.0 2.8 23 267-289 4-26 (271)
462 1ega_A Protein (GTP-binding pr 89.6 0.19 6.5E-06 47.6 3.3 25 265-289 7-31 (301)
463 2hjg_A GTP-binding protein ENG 89.6 0.27 9.1E-06 49.1 4.5 22 268-289 5-26 (436)
464 1knx_A Probable HPR(Ser) kinas 89.5 0.17 5.8E-06 48.5 2.9 33 266-302 147-179 (312)
465 2fna_A Conserved hypothetical 89.5 0.19 6.6E-06 47.5 3.3 32 267-299 31-62 (357)
466 3tvt_A Disks large 1 tumor sup 89.3 0.62 2.1E-05 44.2 6.6 24 266-292 100-123 (292)
467 2x77_A ADP-ribosylation factor 89.3 0.14 4.7E-06 44.1 2.0 23 266-288 22-44 (189)
468 3cpj_B GTP-binding protein YPT 89.2 0.19 6.5E-06 44.8 2.8 25 266-290 13-37 (223)
469 3llu_A RAS-related GTP-binding 89.1 0.18 6.2E-06 43.9 2.6 24 267-290 21-44 (196)
470 3t5d_A Septin-7; GTP-binding p 89.1 0.18 6E-06 47.0 2.6 22 267-288 9-30 (274)
471 1a5t_A Delta prime, HOLB; zinc 89.1 0.19 6.6E-06 48.2 3.0 27 265-291 23-49 (334)
472 1oxx_K GLCV, glucose, ABC tran 89.1 0.12 4E-06 50.6 1.4 34 265-298 30-64 (353)
473 2qnr_A Septin-2, protein NEDD5 89.0 0.18 6.1E-06 47.9 2.6 20 269-288 21-40 (301)
474 1z6t_A APAF-1, apoptotic prote 89.0 0.2 7E-06 51.6 3.3 24 265-288 146-169 (591)
475 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.27 9.2E-06 41.5 3.4 23 266-288 23-45 (149)
476 3ozx_A RNAse L inhibitor; ATP 88.8 0.24 8.2E-06 51.1 3.6 41 340-380 153-196 (538)
477 1ko7_A HPR kinase/phosphatase; 88.8 0.27 9.4E-06 47.1 3.7 33 266-302 144-176 (314)
478 1tf7_A KAIC; homohexamer, hexa 88.7 0.2 6.9E-06 51.3 3.0 26 265-290 280-305 (525)
479 2yc2_C IFT27, small RAB-relate 88.5 0.1 3.6E-06 45.3 0.6 23 267-289 21-43 (208)
480 2g3y_A GTP-binding protein GEM 88.5 0.23 7.7E-06 44.6 2.8 22 267-288 38-59 (211)
481 2a5y_B CED-4; apoptosis; HET: 88.5 0.29 9.8E-06 50.4 4.0 24 265-288 151-174 (549)
482 1t9h_A YLOQ, probable GTPase E 88.5 0.094 3.2E-06 50.2 0.2 25 266-290 173-197 (307)
483 1tq4_A IIGP1, interferon-induc 88.5 0.26 8.7E-06 49.2 3.4 25 266-290 69-93 (413)
484 1wf3_A GTP-binding protein; GT 88.4 0.27 9.4E-06 46.6 3.5 25 265-289 6-30 (301)
485 3pxi_A Negative regulator of g 88.3 0.22 7.6E-06 53.3 3.0 22 269-290 204-225 (758)
486 1yqt_A RNAse L inhibitor; ATP- 88.2 0.24 8.1E-06 51.1 3.1 41 340-380 173-217 (538)
487 3gj0_A GTP-binding nuclear pro 88.0 0.14 4.9E-06 45.4 1.2 21 267-287 16-36 (221)
488 1ni3_A YCHF GTPase, YCHF GTP-b 88.0 0.28 9.7E-06 48.5 3.4 24 265-288 19-42 (392)
489 3iby_A Ferrous iron transport 88.0 0.25 8.4E-06 45.7 2.8 22 268-289 3-24 (256)
490 3f9v_A Minichromosome maintena 87.8 0.14 5E-06 53.4 1.2 25 268-292 329-353 (595)
491 1r6b_X CLPA protein; AAA+, N-t 87.8 0.28 9.6E-06 52.4 3.5 36 267-303 489-524 (758)
492 4dhe_A Probable GTP-binding pr 87.8 0.12 4E-06 45.9 0.4 25 266-290 29-53 (223)
493 3a1s_A Iron(II) transport prot 87.7 0.26 9E-06 45.6 2.8 24 266-289 5-28 (258)
494 3b1v_A Ferrous iron uptake tra 87.7 0.26 9E-06 46.0 2.8 23 267-289 4-26 (272)
495 3vkw_A Replicase large subunit 87.7 0.56 1.9E-05 47.1 5.3 26 264-289 159-184 (446)
496 3io5_A Recombination and repai 87.5 0.32 1.1E-05 46.9 3.3 34 268-301 30-67 (333)
497 3ozx_A RNAse L inhibitor; ATP 87.4 0.25 8.4E-06 51.0 2.7 50 341-390 401-455 (538)
498 2dby_A GTP-binding protein; GD 87.4 0.29 9.9E-06 48.0 3.0 21 269-289 4-24 (368)
499 3b60_A Lipid A export ATP-bind 87.4 0.29 9.8E-06 50.9 3.1 35 265-299 368-403 (582)
500 3upu_A ATP-dependent DNA helic 87.2 0.26 9.1E-06 49.5 2.7 23 268-290 47-69 (459)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=290.42 Aligned_cols=175 Identities=25% Similarity=0.298 Sum_probs=152.7
Q ss_pred CcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 015668 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (403)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~ 121 (403)
..|+||+.|++++|.||+|+++++.. ++|++|||++++.+|+|||||+|.+.. ..++++|||++
T Consensus 11 ~~v~ld~~d~~~~l~ls~d~l~v~~~------~~~~~vra~~~v~~G~~YfEV~v~~~~----------~~~~~~iG~a~ 74 (213)
T 3toj_A 11 ERVLLALHDRAPQLKISDDRLTVVGE------KGYSMVRASHGVRKGAWYFEITVDEMP----------PDTAARLGWSQ 74 (213)
T ss_dssp CCCCEEEEEECTTSEECTTSSEEECC------SSCEEEEESCCBSSEEEEEEEEEEECC----------TTCEEEEEEEC
T ss_pred CeEEechhhCCCCEEEcCCCcEEEeC------CceeEEEeCCCccCCeEEEEEEEeecC----------CCceEEEEecc
Confidence 46999999999999999999999863 689999999999999999999999741 35899999999
Q ss_pred CCCC-CCCCCCCCcceeEe-cCCceeeCCCcccCCCCCCCCCEEEEEEecCCC-----CCceEEEEeCcccccccccccC
Q 015668 122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESK-----PLATIGFAKNGKWLGTAKQFDA 194 (403)
Q Consensus 122 ~~~~-~~~lG~d~~Sygy~-~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~-----p~~~i~ftkNG~~lg~af~~~~ 194 (403)
...+ ..++|+|.+||||+ .+|+++|++....||++|++||||||+||++.. +.++|+||+||+.||+||+.
T Consensus 75 ~~~~~~~~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~-- 152 (213)
T 3toj_A 75 PLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD-- 152 (213)
T ss_dssp TTSCTTSCTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES--
T ss_pred CCcccccCCCCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc--
Confidence 8764 56899999999997 689999998888999999999999999999862 22599999999999999972
Q ss_pred CCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCCCCcc-cceeccccc
Q 015668 195 GSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVE-GYKSWVSAL 249 (403)
Q Consensus 195 ~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~~p~~-g~~p~~~~~ 249 (403)
+ ....|||+|++. +++|++|||+.+.|+|++ +|+|+.+.+
T Consensus 153 -~--------------~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~~~~~~~~ 194 (213)
T 3toj_A 153 -I--------------FEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG 194 (213)
T ss_dssp -C--------------CSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCCEEGGGGG
T ss_pred -C--------------CCCcEEEEEEcCCCCEEEEECCCCCccCCCCCceEcHHHhc
Confidence 1 146899999996 999999999977787776 799997754
No 2
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=269.35 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=132.3
Q ss_pred CcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC-
Q 015668 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP- 125 (403)
Q Consensus 47 ~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~- 125 (403)
|+.||+.+|.|+.|.|++++. ...|++||||+++..|+|||||+|.+.. ..++++|||++...+
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~-----~~~~~~vra~~p~~~g~~YfEv~i~~~~----------~~~~~~IG~a~~~~~~ 67 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGN-----SGEVGCYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSL 67 (171)
T ss_dssp ---CEEESEEEETTEEEECCC-----SSCCEEEECSSCCCSSSCEEEEEEEEET----------TTCCCEEEEECTTCCT
T ss_pred CcccCcceEEEcCCEEEEeCC-----CCceeEEEECCCCCCCCEEEEEEEEECC----------CCcEEEEEecCCCCCC
Confidence 678999999999998888764 2589999999999999999999999863 358999999998765
Q ss_pred CCCCCCCCcceeEec-CCceeeCC-CcccCCCCCCCCCEEEEEEecCC--CCCceEEEEeCcccccccccccCCCCCCcc
Q 015668 126 VGKLGETEQSFGFGG-TGKFSHGG-NFLNFGEKFGVGDTIICAIDLES--KPLATIGFAKNGKWLGTAKQFDAGSNGLGV 201 (403)
Q Consensus 126 ~~~lG~d~~Sygy~~-~G~~~~~~-~~~~yG~~f~~gDVIGc~ldl~~--~p~~~i~ftkNG~~lg~af~~~~~~~~l~~ 201 (403)
...+|+|.+||||++ +|+++|+. ....||++|++||||||+||+++ .+.++|+|||||+.||+||.. +
T Consensus 68 ~~~~G~d~~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~----- 139 (171)
T 2yyo_A 68 DHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---M----- 139 (171)
T ss_dssp TSCTTSSTTCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---S-----
T ss_pred ccCCCccCCEEEEEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---C-----
Confidence 568999999999997 69998874 56899999999999999999972 112799999999999999972 1
Q ss_pred ccchhhcccCCCceEeEEEEe--CeEEEEEccCCCCCCC
Q 015668 202 VDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQGLIP 238 (403)
Q Consensus 202 ~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~~~~~p 238 (403)
....|||+|++. +++|++|||+.+.+||
T Consensus 140 ---------~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp 169 (171)
T 2yyo_A 140 ---------SPDGLFPAVGMHSLGEEVRLHLNAELSGPS 169 (171)
T ss_dssp ---------CSSSCEEEEEECSTTEEEEEETTCCC----
T ss_pred ---------cCCCEEEEEEEecCCCEEEEECCCCCcCCC
Confidence 146999999998 7999999999766654
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.91 E-value=5.8e-24 Score=197.00 Aligned_cols=157 Identities=24% Similarity=0.422 Sum_probs=130.5
Q ss_pred CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (403)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s 120 (403)
+..++||+.++..+|.||+|+++++.... .+.|..||++.++.+|+|||||+|.... ....++|||+
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vl~~~~~~sGrhYWEV~v~~~~----------~g~~~~vGv~ 107 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPV---AQSTDGARGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA 107 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCB---SSCEEEEEESCCBSSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred ccceEeCcccCCCCEEECCCCeEEEECcc---CCCCCEEEeCCCccCccEEEEEEEcccC----------CCCceeEEEE
Confidence 45789999999999999999999876421 2458899999999999999999998531 1247999999
Q ss_pred cCCCC------CCCCCCCCcceeEe-cCCceeeCCCc---ccCC-----CCCCCCCEEEEEEecCCCCCceEEEEeCccc
Q 015668 121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNFG-----EKFGVGDTIICAIDLESKPLATIGFAKNGKW 185 (403)
Q Consensus 121 ~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~---~~yG-----~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~ 185 (403)
+...+ ...+|++..||+|+ .+|.++|++.. ..|+ +.|..+|+|||+||++. ++|+|++||+.
T Consensus 108 ~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~---G~LsFy~ng~~ 184 (217)
T 3emw_A 108 TALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTY 184 (217)
T ss_dssp CTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT---TEEEEEETTEE
T ss_pred cCccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCC---CEEEEEECCeE
Confidence 87643 45799999999997 57888888753 3675 56899999999999998 99999999999
Q ss_pred ccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEc
Q 015668 186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF 230 (403)
Q Consensus 186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nF 230 (403)
+|+||+. . ...+|||+|++. +++|+++|
T Consensus 185 lg~aF~~---~--------------~~~~LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 185 LGPAFRG---L--------------KGRTLYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp EEEEECC---C--------------TTCCBEEEEEECSTTCEEEEEE
T ss_pred eEEEEEC---C--------------CCCEEEEEEEeccCCcEEEEEe
Confidence 9999972 1 256899999996 88998876
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.91 E-value=1.4e-23 Score=193.89 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=128.6
Q ss_pred CCcEEeCcCCCCCCeEEcCCC-ceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 015668 41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (403)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~ 119 (403)
+..++||+.+++.+|.|++|+ ++++... ....|.+||++.++.+|+|||||+|.... ..+.++|||
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~---~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~----------~~~~w~vGV 96 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHP---VAQSTDAIRGKVGYTRGLHVWQITWAMRQ----------RGTHAVVGV 96 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECC---BTTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEE
T ss_pred ccccccChhhcCCceEEeCCCeEEEEECC---CCCccceEEcCCCccCCeEEEEEEEeccc----------CCCcEEEEE
Confidence 467999999999999999997 4665321 13579999999999999999999997421 236789999
Q ss_pred ecCCCC------CCCCCCCCcceeEec-CCceeeCCCcc---------cCCCCCCCCCEEEEEEecCCCCCceEEEEeCc
Q 015668 120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNFL---------NFGEKFGVGDTIICAIDLESKPLATIGFAKNG 183 (403)
Q Consensus 120 s~~~~~------~~~lG~d~~Sygy~~-~G~~~~~~~~~---------~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG 183 (403)
++.... ...+|.+..||+|+. +|+++|++... .|++.|.++|+|||+||++. ++|+|++||
T Consensus 97 ~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~---G~lsFy~ng 173 (212)
T 2jk9_A 97 ATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD---GTLSFIVDG 173 (212)
T ss_dssp ECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT---TEEEEEETT
T ss_pred EcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCC---CEEEEEECC
Confidence 997643 246799999999985 78888876542 25788899999999999998 899999999
Q ss_pred ccccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEc
Q 015668 184 KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF 230 (403)
Q Consensus 184 ~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nF 230 (403)
+.++.||+. . ...+|||++++. +++|.+||
T Consensus 174 ~~l~~aF~~---~--------------~~~~l~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 174 QYMGVAFRG---L--------------KGKKLYPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp EEEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEE
T ss_pred EEeEEEecc---C--------------CCCEEeeEEEEEcCCcEEEEEE
Confidence 999999972 1 146999999995 88999998
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.87 E-value=6.4e-22 Score=184.49 Aligned_cols=160 Identities=24% Similarity=0.408 Sum_probs=128.2
Q ss_pred CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (403)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s 120 (403)
+..++||+.+++.+|.||+|+++++.... .+.+..||++.++.+|+|||||+|.... ..+.+.|||+
T Consensus 38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~V~~~~----------~~~~w~vGV~ 104 (226)
T 2afj_A 38 QRHHGWNPKDCSENIDVKEGGLCFERRPV---AQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA 104 (226)
T ss_dssp HHHHSSCCSSSCCSSEEETTTTEEECSSC---TTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEEE
T ss_pred ccccEEccccCCCCEEEeCCCEEEEECCC---CCCcCeEEECCCccCCEEEEEEEEeccC----------CCCCEEEEec
Confidence 55689999999999999999998874321 2456799999999999999999997521 1367999999
Q ss_pred cCCCC------CCCCCCCCcceeEe-cCCceeeCCCc---ccC-----CCCCCCCCEEEEEEecCCCCCceEEEEeCccc
Q 015668 121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKNGKW 185 (403)
Q Consensus 121 ~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~---~~y-----G~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~ 185 (403)
+.... ...+|.+..||+|. .+|.++|++.. ..| +..|.++|+|||+||++. ++|+|++||+.
T Consensus 105 ~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---G~lSFy~ng~~ 181 (226)
T 2afj_A 105 TALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGTY 181 (226)
T ss_dssp ESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTCS
T ss_pred CCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCC---CEEEEEECCeE
Confidence 87642 34689999999998 47787787663 235 446899999999999998 99999999999
Q ss_pred ccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCC
Q 015668 186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE 233 (403)
Q Consensus 186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~ 233 (403)
++.+|+.. ...+|||++++. +++|.++|-..
T Consensus 182 l~~aF~~~-----------------~~~~L~P~f~l~~g~~~v~l~~~~g 214 (226)
T 2afj_A 182 LGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE 214 (226)
T ss_dssp CSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred eEEEEEcC-----------------CCCEEEEEEEcccCCCEEEEEEcCC
Confidence 99998721 135899999985 67888887554
No 6
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.56 E-value=4.8e-14 Score=124.49 Aligned_cols=120 Identities=19% Similarity=0.302 Sum_probs=86.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHH-hCCCccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHHHHHHHHHHHHHHHHh--
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK-DHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS-- 341 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~-~~~~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~~~a~~~~~~ll~~al-- 341 (403)
+.+|+|+|+|||||||+|+.|++ .+. +.+|+.|.+|+.+... ... ...+....+... .+.+..++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 74 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYRQSIMAH-EERDEYKYTKKKEGIV---TGMQFDTAKSILYG 74 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHHHHHTTS-CCGGGCCCCHHHHHHH---HHHHHHHHHHHHTS
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC---cEEecHHHHHHHhhCC-CccchhhhchhhhhHH---HHHHHHHHHHHHhh
Confidence 47899999999999999999998 454 8899999999876421 110 011222212211 223334555667
Q ss_pred -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..|.+||+|.++.+...|..+.+.+..++ ++.+|++++| +++++|+.+|..
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 78999999999999988887766666555 6678899997 899999999863
No 7
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.44 E-value=4.6e-13 Score=135.34 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=84.5
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
....+.+|+|+|+|||||||+|++|++.+. +.+|+.|.++ .+..+.+ .+..++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~----------------~~~~~~~--------~~~~~l 306 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLG----------------SWQRCVS--------SCQAAL 306 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGSC----------------SHHHHHH--------HHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchHH----------------HHHHHHH--------HHHHHH
Confidence 345689999999999999999999999886 8899888631 1122222 233445
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
..|.+||+|+||..+..|..+++.+++++ .+.+|+++++ +++++|+.+|...
T Consensus 307 ~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~ 360 (416)
T 3zvl_A 307 RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMT 360 (416)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhccc
Confidence 78999999999999999999888887776 7888999997 8999999999763
No 8
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.43 E-value=1.6e-12 Score=124.80 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=86.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh---c
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS---R 342 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al---~ 342 (403)
+.+|+++|+|||||||+|+.|++.+. .+.+|+.|.+|+.+.....-....+....+.. ..+.+..++..++ .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI---VTGMQFDTAKSILYGGD 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHHHHHHTTSCCCC---CCHHHHHH---HHHHHHHHHHHHTTSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccHHHHHhccCCcccccccchhhhhH---HHHHHHHHHHHHHhhcc
Confidence 46899999999999999999998753 28899999998876421000000122221211 1123344556667 7
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.|.+||+|.++..+..|..+.+.+..++ ++.+|++++| +++++|+.+|.
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 8999999999999988887766666655 6778899997 89999999987
No 9
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.36 E-value=1.7e-12 Score=122.88 Aligned_cols=117 Identities=23% Similarity=0.428 Sum_probs=82.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
.+.+|+|+|+|||||||+|+.|++.+. +..+++++.|.+++.+. + |....+.....+ ....+..++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--~------~~~~~e~~~~~~---~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--V------WKEKYEEFIKKS---TYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--S------CCGGGHHHHHHH---HHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--h------hhHHHHHHHHHH---HHHHHHHHhh
Confidence 367999999999999999999998632 11245569999887643 2 111112111111 1234444556
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE 393 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~ 393 (403)
. ..||+|.++.++..|..+.+.+...+ +..+|++++| +++++|+.+|.+.
T Consensus 72 ~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~ 123 (260)
T 3a4m_A 72 N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK 123 (260)
T ss_dssp T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS
T ss_pred C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC
Confidence 6 89999999999998887766666655 6788899987 8999999998643
No 10
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.35 E-value=6.9e-12 Score=111.96 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=77.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHH-HHHHHHHHHHHHHHHHHhcC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ-CLMGRANAIFDVLLSRASRT 343 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~-~~~~~a~~~~~~ll~~al~~ 343 (403)
.+.+|+++|+|||||||+++.|++.+. +.+++.|.+++.+.. +. .. . ...+. .+...+.+.+...+..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~~~~-~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEVMFD-GL-GW-S-DREWSRRVGATAIMMLYHTAATILQS 76 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-HH-CC-C-SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHHHHH-hc-Cc-c-chHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999875 667888999877642 11 00 1 11221 12112222233444555678
Q ss_pred CCeEEEeCCCCCHH-HHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 344 PRNFIIDQTNVFKS-ARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 344 g~~vIlD~Tn~~~~-~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
|.+||+|.++ ... .++.+ ..++. .. +..+|++++| +++++|+.+|..
T Consensus 77 g~~vi~d~~~-~~~~~~~~~-~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 77 GQSLIMESNF-RVDLDTERM-QNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp TCCEEEEECC-CHHHHHHHH-HHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCeEEEecCC-CCHHHHHHH-HHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 9999999988 333 22233 22333 33 5678899887 899999998864
No 11
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.34 E-value=3.2e-12 Score=122.87 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=87.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHH-HHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLM-GRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~-~~a~~~~~~ll~~al~ 342 (403)
.+.+|+|+|+|||||||+|+.|++.++. .+++||.|.+|..+. +... ...+........ .........+++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHP--NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTST--THHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhch--hhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999998742 378999999886532 1000 000000000111 1112223345566678
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH----HHHHHHhcccc---Ccccc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL----KIRSVKRFKEM---GKEQI 399 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~----~~R~~~R~~~~---g~~Vp 399 (403)
.|.+||+|.++.....+..+++.+++.+ .+.+++|.+| +++ ++|+.+|.... ++.+|
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~ 174 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATP 174 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCC
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999998877777777777765 6677888886 677 88888886543 34554
No 12
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.30 E-value=9.4e-12 Score=117.14 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=86.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC-CcccC-CChHHHHHHHHH-HHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-LLRKH-NYSERFQCLMGR-ANAIFDVLLSRA 340 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g-~~~~~-~~~~~~~~~~~~-a~~~~~~ll~~a 340 (403)
..+.+|+|+|+|||||||+|+.|++.++. .+++++.|.+|..+.... ..... ..... ..+. +.+....++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~---~~~~~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDSFRSQHPHYLELQQEYGKDSVE---YTKDFAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGGGGTTSTTHHHHHTTCSSTTHH---HHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHHHHHhchhHHHHHHHcCchHHH---HhhHHHHHHHHHHHHHH
Confidence 45789999999999999999999998752 367899998876431000 00000 00111 1111 222334455556
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+..|.++|||.++.....+..+++.+++.+ .+.++++.+| +++++|+.+|..
T Consensus 106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~ 159 (253)
T 2p5t_B 106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE 159 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 678889999999888777777788887765 6777888887 899999999964
No 13
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.29 E-value=3.1e-11 Score=125.25 Aligned_cols=129 Identities=16% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCccc-C-CChHH-HHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRK-H-NYSER-FQCLMGRANAIFDVLLS 338 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~-~-~~~~~-~~~~~~~a~~~~~~ll~ 338 (403)
..+.+|+|+|+|||||||+|++|++.+. .....+|+.|++|+++........ . ..... +....+.+..++..+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988763 112578899999988752211100 0 01111 11111222222322222
Q ss_pred HH-hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhcc
Q 015668 339 RA-SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRFK 392 (403)
Q Consensus 339 ~a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p--e~~~~R~~~R~~ 392 (403)
.+ ...|.+||+|+||..+..|..+++.+++.+ .+.++++.++ +.+.+|+.+|..
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~ 170 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKI 170 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhh
Confidence 22 268999999999999999998877777655 5666676654 555666656653
No 14
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.28 E-value=2.5e-11 Score=107.08 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=78.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcC-CCc-ccCC-------C-hHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-GLL-RKHN-------Y-SERFQCLMGRANAIFDV 335 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~-g~~-~~~~-------~-~~~~~~~~~~a~~~~~~ 335 (403)
+.+|+++|+|||||||+|+.|++.++. .++.++.|.+++.+... +.. .... + ...+....... ..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAW----AE 77 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHH----HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHH----HH
Confidence 468999999999999999999998863 37788889888764310 000 0000 0 12233332222 22
Q ss_pred HHHHHhcCCCeEEEeCCCCC-HHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 336 LLSRASRTPRNFIIDQTNVF-KSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~-~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+..++..|.+||+|.+++. +..|+.+.+.+.+ +.+.+|++.++ +++.+|+.+|.
T Consensus 78 ~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGD-LDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHHhcCCeEEEEeccccChHHHHHHHHHhcC-CcEEEEEEECCHHHHHHHHHhhC
Confidence 33444578899999998764 3445555555543 36677888886 89999999885
No 15
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.14 E-value=9.7e-10 Score=97.71 Aligned_cols=120 Identities=19% Similarity=0.146 Sum_probs=76.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-----------HH-HHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-----------QC-LMGRANAIF 333 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-----------~~-~~~~a~~~~ 333 (403)
+.+|+++|+|||||||+|+.|++.+. +.+++.|.+.......+. ..+.... +. ........+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 76 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPD---SQYGELIEKYIKEGKIVPVEITISLLKREM 76 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTT---STTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccC---ChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999998876 678888876543321111 0011100 00 111111112
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 334 DVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
...+ .++..+..+|+|.+..+...++.+.+.+.... .-.+|++++| +++++|..+|..
T Consensus 77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 2222 23456889999999888877766665555432 3356788887 899999998864
No 16
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.10 E-value=1.1e-09 Score=98.88 Aligned_cols=145 Identities=8% Similarity=-0.024 Sum_probs=99.6
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV 114 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~ 114 (403)
.++||+.....+|.||+|+.+++... ++.|. .|..|.++-++.+|++||||.+.+ ...
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrHYWEVev~~-------------~~~ 79 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFD-SCIIVLGSPSFLSGRRYWEVEVGD-------------KTA 79 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCS-SSCCEEEECCBCSSEEEEEEECTT-------------CSC
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCccccc-ccccccCcccccCCCEEEEEEeCC-------------CCE
Confidence 68999999999999999998875432 23333 477899999999999999999863 356
Q ss_pred EEEEEecCCCC---CCCCCCCCcceeEec-CCcee---eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccc
Q 015668 115 CRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS---HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187 (403)
Q Consensus 115 ~rVG~s~~~~~---~~~lG~d~~Sygy~~-~G~~~---~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg 187 (403)
+.||++..... ...+|.+..+|...- ++..+ |+....-. .-.....||++||++. +.|+|+- -...-
T Consensus 80 w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~--~~~~~~rVGVfLDye~---G~lSFY~-v~~~~ 153 (191)
T 2wl1_A 80 WILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLL--IKEPPKRVGIFVDYRV---GSISFYN-VTARS 153 (191)
T ss_dssp EEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECC--CSSCCSEEEEEEETTT---TEEEEEE-TTTTE
T ss_pred EEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCc--cccCCcEEEEEEEcCC---CEEEEEE-CCCCc
Confidence 89999986542 235777888898752 24332 22211111 1234679999999998 8999984 23222
Q ss_pred ccccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668 188 TAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK 222 (403)
Q Consensus 188 ~af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~ 222 (403)
.-|++.. . ..++|||++++.
T Consensus 154 ~i~tF~~~~---------------Fs~pl~P~F~~~ 174 (191)
T 2wl1_A 154 HIYTFASCS---------------FSGPLQPIFSPG 174 (191)
T ss_dssp EEEEECCCC---------------CCSCEEEEEECC
T ss_pred ceEEeCCCC---------------CCCCEEeEEEcc
Confidence 2333322 1 257999998764
No 17
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.08 E-value=6.5e-10 Score=96.70 Aligned_cols=118 Identities=13% Similarity=0.202 Sum_probs=72.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHHHHHh--c
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLLSRAS--R 342 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll~~al--~ 342 (403)
.+|+++|+|||||||+|+.| +.+. +.+++.|++ ++.+...+. .........+...+.. ...+..++..++ .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSIEAK-PGERLMDFAKRLREIYGDGVVARLCVEELGTS 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHhcCC-ChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999 7765 667776654 444332221 0001011111111110 112333444445 6
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..||+|.. .....+.. ++.+.. .+..+|++++| +++++|...|..
T Consensus 77 ~~~~vi~dg~-~~~~~~~~-l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEE-FKRLLG-DSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp CCSCEEEECC-CCHHHHHH-HHHHHC-SCEEEEEEECCHHHHHHHHHTCC-
T ss_pred CCCeEEEeCC-CCHHHHHH-HHHHhC-CCcEEEEEECCHHHHHHHHHhccC
Confidence 7889999997 77776654 333332 36778899997 899999999865
No 18
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.08 E-value=5.2e-10 Score=98.89 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=68.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH----HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN----LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D----~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
+.+|+++|+|||||||+|+.|++.+.. .++++.| .+++.+. .|.. ...+...+.. ...+.+..++ .
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~--~~i~d~~~~g~~i~~~~~-~g~~-~~~~~~~~~~---~~~~~i~~~l---~ 74 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG--SFVFEPEEMGQALRKLTP-GFSG-DPQEHPMWIP---LMLDALQYAS---R 74 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT--CEECCTHHHHHHHHHTST-TCCS-CGGGSTTHHH---HHHHHHHHHH---H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC--CEEEchhhhHHHHHHhCc-cccc-hhhhhHHHHH---HHHHHHHHHH---H
Confidence 578999999999999999999988763 2223433 3343322 2211 0001112211 1111122222 2
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..|..||+|.++..+..+..+++.+...+ .+.+|++++| +++++|+.+|.
T Consensus 75 ~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 75 EAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred hCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 24889999999998877777777776554 5566888887 89999999885
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.07 E-value=1.9e-09 Score=95.70 Aligned_cols=121 Identities=23% Similarity=0.289 Sum_probs=74.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRA 340 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~a 340 (403)
.+.+|+++|+|||||||+|+.|++.++ +.+++.|.+..+....|. ............- ......++..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 77 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGS----KDGEMIATMIKNGEIVPSIVTVKLLKNA 77 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----TTHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCC----HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 357999999999999999999998876 688888776443321221 0111111111000 00111122222
Q ss_pred h--cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 S--RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l--~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+ ..+..+|+|........++.+.+.+.... .-.+|++++| +++++|+.+|..
T Consensus 78 i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 78 IDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 1 26789999998877776665555444322 3347788887 899999998863
No 20
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.07 E-value=1.8e-09 Score=97.33 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=100.4
Q ss_pred CcEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668 42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (403)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (403)
..++||+....++|.||+|+.+++... ++.|. .|..|.++-++.+|++||||.+.+ ..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~ 74 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFS-NYPMVLGAQRFSSGKMYWEVDVTQ-------------KE 74 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSEEEBSCCBSSSEEEEEEECTT-------------CS
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCcccee-eeccccccCcccCCCeEEEEEecC-------------Cc
Confidence 468999999999999999998875432 22333 477899999999999999999863 35
Q ss_pred cEEEEEecCCCC---CCCCCCCCcceeEec-CCce--eeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcc--c
Q 015668 114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKF--SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK--W 185 (403)
Q Consensus 114 ~~rVG~s~~~~~---~~~lG~d~~Sygy~~-~G~~--~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~--~ 185 (403)
.+.||++..... ...+|.+..+|...- ++.. +|+....-.- -.....||++||++. +.|+|+-... .
T Consensus 75 ~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~--~~~~~rVGVfLDye~---G~lSFY~v~~~~~ 149 (188)
T 2vok_A 75 AWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI--QVPPCQIGIFVDYEA---GVVSFYNITDHGS 149 (188)
T ss_dssp CEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSCEEECC--SSCCSEEEEEEETTT---TEEEEEETTTTTE
T ss_pred eEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCccCEec--CCCCCEEEEEEEcCC---CEEEEEECCCCCe
Confidence 689999986542 346788999999853 3431 2332211111 124579999999998 8999985322 2
Q ss_pred ccccccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668 186 LGTAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK 222 (403)
Q Consensus 186 lg~af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~ 222 (403)
+-..|. . . ..++|||++++.
T Consensus 150 ~I~tF~--~~~---------------Fs~pL~P~F~~~ 170 (188)
T 2vok_A 150 LIYTFS--ECV---------------FAGPLRPFFNVG 170 (188)
T ss_dssp EEEEEC--SCC---------------CCSCEEEEEECC
T ss_pred eeEEec--CCC---------------CCCCEEeEEEec
Confidence 222332 2 1 256999998764
No 21
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.06 E-value=3.1e-09 Score=96.77 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=100.2
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV 114 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~ 114 (403)
.++||+.....+|.||+|+.+++... ++.|. .|..|.++-++.+|++||||.+.+ ...
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~~ 76 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQV 76 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CSE
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCcccee-eccceecCccccCCceEEEEEeCC-------------CCE
Confidence 58999999999999999998875432 22333 477899999999999999999863 356
Q ss_pred EEEEEecCCCC---CCCCCCCCcceeEe-cCCcee--eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccc
Q 015668 115 CRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188 (403)
Q Consensus 115 ~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~~--~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~ 188 (403)
+.||++..... ...++.+..+|... .+|..+ +.+.....- .-.....||++||++. ++|+|+-. ...-.
T Consensus 77 w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~v-~~~~~ 151 (201)
T 2fbe_A 77 WDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW-VSPQLHRVGIFLDVGM---RSIAFYNV-SDGCH 151 (201)
T ss_dssp EEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEEC-CCTTCCEEEEEEETTT---TEEEEEET-TTTEE
T ss_pred EEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCc-cCCCCCEEEEEEEcCC---CEEEEEeC-CCCce
Confidence 99999986542 23467788899885 334332 222211110 1234579999999998 89999852 22222
Q ss_pred cccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668 189 AKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK 222 (403)
Q Consensus 189 af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~ 222 (403)
-|++.. . ..++|||++++.
T Consensus 152 i~tF~~~~---------------Fs~pL~P~F~~~ 171 (201)
T 2fbe_A 152 IYTFIEIP---------------VCEPWRPFFAHK 171 (201)
T ss_dssp EEEECSCC---------------CSSCEEEEEEEE
T ss_pred eEEEcCCC---------------CCCCEEeEEEec
Confidence 333322 1 256999999874
No 22
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.05 E-value=1.9e-09 Score=94.89 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=73.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh--h--cCCCcccCCChH-HHHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM--K--VPGLLRKHNYSE-RFQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l--~--~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~ 339 (403)
..++|+++|+|||||||+++.++..+. +++++.|.++... . ..|.. +.. ......... ..++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~----~~~~~~ 75 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKMASGEP----LNDDDRKPWLQAL----NDAAFA 75 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHHHTTCC----CCHHHHHHHHHHH----HHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccchHHHHHhhcCcC----CCccccccHHHHH----HHHHHH
Confidence 368999999999999999999998764 6788888763210 0 12321 111 111111111 223333
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
++..+..+|+|.+++.+..|. .+++.. .+.+|++++| +++++|+.+|.
T Consensus 76 ~~~~~~~~vi~~~~~~~~~~~----~l~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 76 MQRTNKVSLIVCSALKKHYRD----LLREGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHHCSEEEEECCCCSHHHHH----HHHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred HHhcCCcEEEEeCchHHHHHH----HHHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 445678999999988776554 344443 6678899997 89999999885
No 23
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.05 E-value=2.7e-09 Score=95.01 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=77.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al 341 (403)
...+|+++|+|||||||+++.++..+.. ..+.+++.|.++..+. +.. .+.. ........+ ..+...++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~--~~~---~~~~~~r~~~~~~~----~~~~~~~~ 82 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS--EGA---GFTREERLRHLKRI----AWIARLLA 82 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT--TTC---CCCHHHHHHHHHHH----HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh--hcc---CCChhhHHHHHHHH----HHHHHHHH
Confidence 4689999999999999999999887642 2256788888876543 211 1221 111112111 11222335
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~ 389 (403)
..|..||+|.++.++..|..+.+.+...+ +..+|++++| +++.+|+.+
T Consensus 83 ~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 83 RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 78889999999988888876555555444 6788899997 889888644
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.03 E-value=7.3e-10 Score=100.05 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=73.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-----HHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-----~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a 340 (403)
+.+|+|+|+|||||||+|+.|++.+. +.+++.|.++ ..+. .|. .+... ..... + ..+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~--~~~~~----~-~~l~~~ 82 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRKMS-EGI----PLTDD--DRWPW----L-AAIGER 82 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHHHH-HTC----CCCHH--HHHHH----H-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHHHh-cCC----CCCch--hhHHH----H-HHHHHH
Confidence 57899999999999999999998875 6788888763 2111 121 11111 01111 1 122233
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+..+..+|+|.++..+..|.. ++.+.. .+..+|++++| +++++|+.+|..
T Consensus 83 ~~~~~~vivd~~~~~~~~~~~-l~~~~~-~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 83 LASREPVVVSCSALKRSYRDK-LRESAP-GGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp HTSSSCCEEECCCCSHHHHHH-HHHTST-TCCEEEEEECCHHHHHHHHHHHHS
T ss_pred HhcCCCEEEECCCCCHHHHHH-HHHhcC-CCeEEEEEeCCHHHHHHHHHHhhc
Confidence 378899999999998877764 322221 14678899997 899999999863
No 25
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.00 E-value=3.7e-09 Score=94.23 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=72.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL 336 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~~~~l 336 (403)
.+.+|+++|+|||||||+|+.|++.++ +.+++.|.+.......|.. ......... +.....+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~ 80 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSA----RGKKLSEIMEKGQLVPLETVLDMLRDA 80 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 357899999999999999999998876 6788888755442111110 001000000 0111223344
Q ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..++..|..+|+|........++.+...+ ...-.+|++++| +++++|..+|.
T Consensus 81 i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 81 MVAKVNTSKGFLIDGYPREVQQGEEFERRI--GQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHTTTCSCEEEESCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHhccccCCcEEEeCCCCCHHHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHccC
Confidence 445567889999998666655444322222 123467788887 89999998885
No 26
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.99 E-value=3.7e-09 Score=108.18 Aligned_cols=127 Identities=18% Similarity=0.028 Sum_probs=75.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCccc-C-CChHH-HHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRK-H-NYSER-FQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~-~-~~~~~-~~~~~~~a~~~~~~ll~~ 339 (403)
.+.+|+|+|+|||||||++++|++.+. ......++.|.++.++........ . ..+.. .......+..++..+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988643 112577888888877531101000 0 01111 111111222222222222
Q ss_pred Hh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhc
Q 015668 340 AS-RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRF 391 (403)
Q Consensus 340 al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p--e~~~~R~~~R~ 391 (403)
.. ..|..+|+|+||..++.|+.+++.+++.+ .+.++.+.++ +.+.+|...|.
T Consensus 118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence 22 57889999999999999999888887655 4444454443 44555544433
No 27
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.99 E-value=2.8e-09 Score=96.27 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=74.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH-----HhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLS 338 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~-----~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~ 338 (403)
..++|+++|+|||||||+++.++..+. ++.++.|.++. .+. .|.. ++. ....... .+...+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~~~~~~~-~g~~----~~~~~~~~~~~----~~~~~~~ 95 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPENIATMQ-RGIP----LTDEDRWPWLR----SLAEWMD 95 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHHHHHHHH-TTCC----CCHHHHHHHHH----HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHHHHHHHh-cCCC----CCCcccccHHH----HHHHHHH
Confidence 468999999999999999999998874 67888887531 111 2321 111 1111111 1222333
Q ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
..+..+..+|+|.+...+..|+. +.+.. +..+|++++| +++++|+.+|..
T Consensus 96 ~~~~~g~~viid~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 96 ARADAGVSTIITCSALKRTYRDV----LREGPPSVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp HHHHTTCCEEEEECCCCHHHHHH----HTTSSSCCEEEEEECCHHHHHHHHTTCSC
T ss_pred HHHhcCCCEEEEchhhhHHHHHH----HHHhCCceEEEEEeCCHHHHHHHHHhccc
Confidence 34567889999999888766653 34332 5678899997 899999998853
No 28
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.97 E-value=4.7e-09 Score=95.55 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS-- 341 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al-- 341 (403)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+..+....+.. ........+.. .......++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 74 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETP----LGLEAKSYIDKGELVPDEVTIGIVKERLGK 74 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 478899999999999999999886 6788887654432212210 00111111000 0011112222222
Q ss_pred -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 015668 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R 390 (403)
..+..+|+|........+..+.+.+...+ .. .++++++| +++++|+.+|
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 75 DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 33789999997777776666555555444 33 57788887 8999999999
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.97 E-value=4.8e-09 Score=93.73 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=73.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLL 337 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~~~~ll 337 (403)
+.+|+++|+|||||||+|+.|++.+. +.+++.|.+.......+.. ......... +.....+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~i 84 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESE----RSKLIRDIMERGDLVPSGIVLELLKEAM 84 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCH----HHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999876 6788888764332111110 000000000 01112223334
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
...+..+..+|+|....+...+..+.+.+ . ..-.+|++++| +++++|..+|..
T Consensus 85 ~~~~~~~~~vi~dg~~~~~~~~~~l~~~~-~-~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 85 VASLGDTRGFLIDGYPREVKQGEEFGRRI-G-DPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHTTSCSCEEEETCCSSHHHHHHHHHHT-C-CCSEEEEEECCHHHHHHHHHHTCC
T ss_pred hcccccCccEEEeCCCCCHHHHHHHHHhc-C-CCCEEEEEECCHHHHHHHHHcCCC
Confidence 44456789999999888776655433222 1 22357788887 899999998864
No 30
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.97 E-value=2.6e-09 Score=94.29 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=79.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
..+++.|+|++||||||+++.+... ..+++.|.++..+. ..... ........+.. .......+..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~~~d~~~g~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~~g 73 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKP-----TEVISSDFCRGLMS--DDEND---QTVTGAAFDVL----HYIVSKRLQLG 73 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCG-----GGEEEHHHHHHHHC--SSTTC---GGGHHHHHHHH----HHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHccC-----CeEEccHHHHHHhc--Ccccc---hhhHHHHHHHH----HHHHHHHHhCC
Confidence 4689999999999999999997643 34578888876543 21100 01111112221 12233345779
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+++|+++.....|++++..++.+. +..+++++.| ..+-.|+++|.
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 99999999999998888888888876 7888999999 77888887665
No 31
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.96 E-value=5.4e-09 Score=95.07 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh--
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS-- 341 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al-- 341 (403)
.|+++|+|||||||+|+.|++.++ +.+++.|.+..+....+.. ........+..- ......++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 74 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTE----LGLKAKSFMDQGNLVPDEVTIGIVHERLSK 74 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 478899999999999999998876 6778887654443212210 011111111110 011222333333
Q ss_pred -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 015668 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R 390 (403)
..+..+|+|........+..+.+.+...+ .. .++++++| +++++|+.+|
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 23789999997777776665555555444 33 67788887 8999999998
No 32
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=98.95 E-value=8.9e-09 Score=92.61 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=97.5
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecC
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG 122 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~ 122 (403)
.|+|||.... +|.||+|+.+++.. .+..|.+.-++.+|++||||.+.+ ...+.||++..
T Consensus 13 ~vTLDp~TA~-~l~lSed~r~Vr~~-------~~~~VLG~~~ftsGrHYWEVeV~~-------------~~~W~vGV~~~ 71 (186)
T 3uv9_A 13 DVTLATNNIS-HAVIAEDKRQVSSR-------AGTGVLGSQSITSGKHYWEVDVSK-------------KSAWILGVCAG 71 (186)
T ss_dssp CCCCCCCSSC-CCEECTTSSCEECC-------CSSCEECSSCBCSSEEEEEEECTT-------------CSCEEEEEESC
T ss_pred EeEeCCCCcC-CceECCCCCEEeec-------CCCcCcCCCCCCCCCEEEEEEEcC-------------CCcEEEEEEEE
Confidence 5899999987 59999999999753 345799999999999999999863 36789999864
Q ss_pred CCC--------CCCCCCCCcceeEe-cCCce---eeCCCcc-cCCC------CCCCCCEEEEEEecCCCCCceEEEEe--
Q 015668 123 DDP--------VGKLGETEQSFGFG-GTGKF---SHGGNFL-NFGE------KFGVGDTIICAIDLESKPLATIGFAK-- 181 (403)
Q Consensus 123 ~~~--------~~~lG~d~~Sygy~-~~G~~---~~~~~~~-~yG~------~f~~gDVIGc~ldl~~~p~~~i~ftk-- 181 (403)
... ...+|.+..+|+.. .+|.. +|++... ..+. .-.....||++||++. +.|+|+-
T Consensus 72 ~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~---G~lSFYnv~ 148 (186)
T 3uv9_A 72 FQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA---CTVSFFNIT 148 (186)
T ss_dssp STTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT---TEEEEEETT
T ss_pred EecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC---CEEEEEeCC
Confidence 321 23578888899985 45543 3444332 2222 1234678999999998 8999982
Q ss_pred CcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe
Q 015668 182 NGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222 (403)
Q Consensus 182 NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~ 222 (403)
|...+...|. ... ..++|||..++.
T Consensus 149 d~~~lI~tF~-~~~---------------Fs~pL~P~F~~~ 173 (186)
T 3uv9_A 149 NHGFLIYKFS-QCS---------------FSKPVFPYLNPR 173 (186)
T ss_dssp TTTEEEEEEC-SCC---------------CSSCBEEEEECT
T ss_pred CCceEEEEeC-CcC---------------CCCCEEeEEECC
Confidence 2222333332 111 246899998875
No 33
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.95 E-value=5.2e-09 Score=92.70 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=70.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH-HhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~-~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~a 340 (403)
..+|+++|+|||||||+++.|++.+. +.++++|.+.. .+. .+. ............ .......++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~-~~~----~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 75 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVA-RGT----PLGERVRPIMERGDLVPDDLILELIREE 75 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHH-TTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHH-cCC----hHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 57899999999999999999998875 67898876543 322 111 001111111100 001122233344
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..+ +|+|........+..+.+.+...+ .-.++++++| +++++|..+|.
T Consensus 76 l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 76 LAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp CCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred hcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 4544 999987776665543333344433 2356888887 89999999885
No 34
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.93 E-value=1.3e-08 Score=91.58 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=72.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH-hhcCCCcccCCChHHHHHHHHHH----HHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLS 338 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~-l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~ 338 (403)
..+.+|+|+|+|||||||+|+.|++.+. +.+++.|.+..+ +. .+.. ...........- ......++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~ 89 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIE-EGTK----LGVEAKRYLDAGDLVPSDLTNELVD 89 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-TTCH----HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHH-cCCh----HHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3467899999999999999999999875 567888766433 32 1110 001111111000 000111121
Q ss_pred HH---hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668 339 RA---SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 339 ~a---l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.. ...+..+|+|.+......+..+.+.+...+ .-.+|+|++| +++++|+.+|.+
T Consensus 90 ~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r 149 (201)
T 2cdn_A 90 DRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR 149 (201)
T ss_dssp HHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred HHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 11 234678999987777766654434454433 3367888887 899999998853
No 35
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.92 E-value=2.4e-08 Score=89.87 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=71.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh-hcCCCcccCCChHHHHHHH--------HHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHNYSERFQCLM--------GRANAIFD 334 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l-~~~g~~~~~~~~~~~~~~~--------~~a~~~~~ 334 (403)
..+.+|+++|+|||||||+++.|++.++ +.+++.|.+..+. ...+. .+.......+ +.....+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l~ 85 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALLR 85 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHHhccCC----HHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 4578999999999999999999999886 6888888764432 11121 1111111100 01112233
Q ss_pred HHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 335 VLLSRASRTP-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 335 ~ll~~al~~g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+.+..++..| ..+|+|......+... .++.... ..-.+|++++| +++++|..+|.
T Consensus 86 ~~i~~~l~~g~~~~i~dg~~~~~~~~~-~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 86 NAISDNVKANKHKFLIDGFPRKMDQAI-SFERDIV-ESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHHHTTCCEEEEETCCCSHHHHH-HHHHHTC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEeCCCCCHHHHH-HHHHhcC-CCCEEEEEECCHHHHHHHHHhcc
Confidence 3343444555 6899998655444333 2322211 13356788887 88999998885
No 36
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.91 E-value=1.7e-08 Score=94.29 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=74.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSR 339 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~ 339 (403)
..+.+|+++|+|||||||+|+.|++.++ +.+++.|++..+....+. .........+..- ......++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~~~~ 99 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKT----ELGLKIKNIINEGKLVDDQMVLSLVDE 99 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSS----HHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccc----hHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3478999999999999999999998876 788888765444321221 0111111111100 0112223333
Q ss_pred HhcC---CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASRT---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+.. +..+|+|.........+.+.+.+...+ .-.+++|++| +++++|+.+|.
T Consensus 100 ~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 100 KLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 3333 788999996555555554444455443 3467788887 89999999986
No 37
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.90 E-value=7.3e-09 Score=94.30 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=73.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-Ccc--EEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKR--YILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~--~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~a 340 (403)
...+|+++|+|||||||+++.+++.++ ..+ +++++.|.++..+. .. ..+. .......+.+ ..++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~--~~---~~~~~~~r~~~~~~~----~~~~~~~ 94 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KD---LGFSEADRNENIRRI----AEVAKLF 94 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT--TT---CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence 468999999999999999999988764 222 78898888876542 11 1122 1112222221 1223345
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHh------cCC-cEEEEEECCh-HHHHHHH
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFV------NFR-KIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~------~~~-~~~vv~l~~p-e~~~~R~ 387 (403)
+..|..||+|.++.++..|..+.+.+. ... +..+|+|++| +++.+|+
T Consensus 95 l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 95 ADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 678999999977666666664333333 112 4778999997 8898883
No 38
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.90 E-value=1.2e-08 Score=93.81 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=68.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT 343 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~~ 343 (403)
+|+++|+|||||||+|+.|++.+. +.++++|++..+....+. .........+.. -.+....++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 74 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGT----ELGKKAKEFIDRGDLVPDDITIPMVLETLES 74 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTC----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCC----HHHHHHHHHHHcCCcCcHHHHHHHHHHHHhc
Confidence 689999999999999999999875 678888776443211111 001111111100 001122233333344
Q ss_pred --CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 344 --PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 344 --g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..||+|.........+.+.+.+...+ .-.++++++| +++++|...|.
T Consensus 75 ~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 75 KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred ccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 889999975444443333222223332 3467888887 89999999885
No 39
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=98.89 E-value=3.6e-08 Score=89.13 Aligned_cols=145 Identities=10% Similarity=0.110 Sum_probs=95.7
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecC---------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLH---------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~---------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (403)
.++||+.....+|.||+|+.+++... ++.|. .|..|.+.-++.+|++||||.+.. ..
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrhYWEVev~~-------------~~ 78 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFD-KAVAVVAHQQLSEGEHYWEVDVGD-------------KP 78 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCS-SSCEEEBSCCBCSSEEEEEEECTT-------------CS
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccc-cccEEccCCcccCCCEEEEEEeCc-------------Cc
Confidence 58999999999999999998875432 12222 367899999999999999999863 35
Q ss_pred cEEEEEecCCCC---CCCCCCCCcceeEe-cCCce--e-eCCCcc-cCCCCCCCCCEEEEEEecCCCCCceEEEEe--Cc
Q 015668 114 VCRVGTSRGDDP---VGKLGETEQSFGFG-GTGKF--S-HGGNFL-NFGEKFGVGDTIICAIDLESKPLATIGFAK--NG 183 (403)
Q Consensus 114 ~~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~--~-~~~~~~-~yG~~f~~gDVIGc~ldl~~~p~~~i~ftk--NG 183 (403)
.+.||++..... ...++.+..+|... .+|.. . ++.... ..-.+-..-..||++||.+. +.|+|+- ++
T Consensus 79 ~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~---G~lSFY~v~~~ 155 (193)
T 3kb5_A 79 RWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGD---GVLSFYDASDA 155 (193)
T ss_dssp SEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTT---TEEEEEECCST
T ss_pred eEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCC---CEEEEEeCCCC
Confidence 689999986532 22345566789874 34432 2 222211 01111123458999999998 8998874 21
Q ss_pred --ccccccccccCCCCCCccccchhhcccCCCceEeEEEE
Q 015668 184 --KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILL 221 (403)
Q Consensus 184 --~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l 221 (403)
..+--.|. .. ..+++||..++
T Consensus 156 ~~~s~I~tF~--~~---------------Ft~pl~P~F~~ 178 (193)
T 3kb5_A 156 DALVPLFAFH--ER---------------LPRPVYPFFDV 178 (193)
T ss_dssp TCCEEEEEEC--SC---------------CCSCEEEEEEC
T ss_pred CCceEEEEeC--CC---------------CCCCeECEEEc
Confidence 23333343 22 25689999865
No 40
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.86 E-value=1.7e-08 Score=92.33 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=68.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL 337 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll 337 (403)
+.+|+++|+|||||||+|+.|++.+. +.++++|++..+....+. ........++. .....+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGT----QLGLEAKKIMDQGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHcCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999886 678888766443211111 00000011110 0111112222
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~ 391 (403)
......+..+|+|....+...++.+-+.+...+ .. .++++++| +++++|...|.
T Consensus 77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 111124668999975444444443323333333 33 67899987 89999998885
No 41
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.86 E-value=1.3e-08 Score=91.77 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=74.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEE--EeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYI--LLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v--~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a 340 (403)
...++|+++|++||||||+++.++..+...+++ .++.|.++..+. .+ ..+.. ......... ..+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~-~~----~~~~~~~~~~~~~~~----~~~~~~~ 93 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLN-RD----LSFKAEDRAENIRRV----GEVAKLF 93 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT-TT----CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhh-cc----cCcChHHHHHHHHHH----HHHHHHH
Confidence 347899999999999999999998876422233 788888775442 11 11221 111112221 1233334
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~ 387 (403)
...+..+|++..+..+..|..+ +.......+.+||++++ +++.+|.
T Consensus 94 ~~~~~~vi~~~~~~~~~~r~~~-~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 94 ADAGIICIASLISPYRTDRDAC-RSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHTTCEEEEECCCCCHHHHHHH-HHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HhCCceEEEecCCchHHHHHHH-HHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 5688999999999998888753 33332226778999997 8999996
No 42
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.85 E-value=1.3e-08 Score=107.22 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=79.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~al 341 (403)
.+.+|+|+|+|||||||+|+.|++.+. +..++.++.|.+|..+.. + ..+. ...+..++++ .+++..++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~-~----~~fs~~dree~~r~i----~eva~~~l 121 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-N----LGFSPEDREENVRRI----AEVAKLFA 121 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT-T----CCSSHHHHHHHHHHH----HHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc-c----ccCChhhhHHHHHHH----HHHHHHHH
Confidence 468999999999999999999998762 123677877877764421 1 1122 1112222222 22334456
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~ 388 (403)
+.|..||.|.++.++..|..+.+.+.+.. ++.+|+|++| +++.+|+.
T Consensus 122 ~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 122 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 78999999988888777776666666554 6889999997 89999976
No 43
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.85 E-value=2.5e-08 Score=91.04 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=75.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al~ 342 (403)
+|++.|+|||||+|.|+.|++.+. +.+||+.+ +|+++. .+. ..+......++.- ......++...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~-~~t----~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQ-KGT----PLGKKAKEYMERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH-HTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHH-hcC----hhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence 578899999999999999999986 88999855 565543 121 0111112222210 1233456666677
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~p-e~~~~R~~~R~ 391 (403)
....+|+|.---+..+-+.+.+.+...+ . -.++++++| +++++|...|.
T Consensus 74 ~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 74 KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 7778999985555554444334444443 3 367789998 79999999984
No 44
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.84 E-value=2.3e-08 Score=91.44 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=69.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHH-
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRA- 340 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~a- 340 (403)
+..|+++|+|||||||+|+.|++.+. +.++++|++..+....+. ..+.....++..- .+....++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l 77 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGT----KIGLEAKSIIESGNFVGDEIVLGLVKEKF 77 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC------CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCC----HHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 45789999999999999999999886 788888776543211111 0111111111100 01111222222
Q ss_pred --hcCCCeEEEeCCCCCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 341 --SRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 341 --l~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..+..+|+|....+..... .++ .+...+ .-.+|++++| +++++|...|.
T Consensus 78 ~~~~~~~~~i~dg~~~~~~~~~-~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 78 DLGVCVNGFVLDGFPRTIPQAE-GLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HTTTTTTCEEEESCCCSHHHHH-HHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred hccccCCCEEEeCCCCCHHHHH-HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 23478899997544443333 333 333332 3467899997 89999999885
No 45
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.82 E-value=3.3e-08 Score=103.54 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=81.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSR 339 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~ 339 (403)
+.+.+|+++|+|||||||+|+.|++.+.. ..++.++.|.+|..+. +.. .+.. .....++++ ..++..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~--~~~---~f~~~er~~~i~ri----~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS--SEL---GFTREDRHTNIQRI----AFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTC--TTC---CCSHHHHHHHHHHH----HHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhc--ccc---CCChhHHHHHHHHH----HHHHHH
Confidence 45689999999999999999999988652 2368898999887642 321 1221 111122222 224444
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
+++.|..||.|.++.++..|....+.+...+.+.+||+++| ++|.+|..
T Consensus 465 ~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 465 LTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred HHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 55789999999999889888866555554346788999998 89999964
No 46
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.76 E-value=1e-07 Score=84.79 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
++++++|+|||||||+++.++.... ..+.++.|.+++... .|...+...........+. +...+...+..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~ 75 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIINHMVV-GGYRPPWESDELLALTWKN----ITDLTVNFLLAQND 75 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHHTTCC-TTCCCGGGCHHHHHHHHHH----HHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchhhhhc-cccccCccchhHHHHHHHH----HHHHHHHHHhcCCc
Confidence 6899999999999999999988654 257888888765431 1211111100111112222 22223333457789
Q ss_pred EEEeCCCCCHHHHHHHHHHHh--cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 347 FIIDQTNVFKSARKRKLRLFV--NFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~--~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+|+|.. ..+..++.+.+.+. ... ++.++++.++ +++.+|...|..
T Consensus 76 ~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 76 VVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp EEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred EEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 999986 35555544333332 223 5667777776 899999988753
No 47
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.75 E-value=7.9e-08 Score=88.50 Aligned_cols=120 Identities=21% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH--------HHHH
Q 015668 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR--------ANAI 332 (403)
Q Consensus 262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~ 332 (403)
..+.+++|++.|+|||||+|.|+.|++.+. +.+||+.+ +|+++. .+. ..+.....+++. ...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~-~~t----~lg~~~~~~~~~G~lVpde~~~~l 96 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQ-SGS----PKGKELKAMMERGELVPLEVVLAL 96 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHT-TCC----HHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHH-cCC----chHHHHHHHHhcCCCCCHHHHHHH
Confidence 335689999999999999999999999986 88999865 455542 221 001111111111 1112
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+...+.........+|+|.---+..+ ...+. .... ...++++++| +++.+|...|..
T Consensus 97 v~~~l~~~~~~~~g~ilDGfPRt~~Q-a~~l~--~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 97 LKEAMIKLVDKNCHFLIDGYPRELDQ-GIKFE--KEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHHHHHHHTTTCSEEEEETBCSSHHH-HHHHH--HHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred HHHHHhhccccccCcccccCCCcHHH-HHHHH--HhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 22222233345678999983333332 22222 1222 4467788998 799999988854
No 48
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.72 E-value=2.9e-08 Score=93.28 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=70.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH--HHhhc-CCCcc------------c--C----CChHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLR------------K--H----NYSERFQCL 325 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir--~~l~~-~g~~~------------~--~----~~~~~~~~~ 325 (403)
.+|+++|+|||||||+|+.|++.++ +.+++.|.+. ..+.+ .+..+ . . .++. ...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~f 76 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDA--ESA 76 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH--HHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccH--HHH
Confidence 5899999999999999999999876 6778888753 11100 00000 0 0 0110 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc----CC-cEEEEEECCh--HHHHHHHHHhccc--cCc
Q 015668 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN----FR-KIAVVVFPKP--EDLKIRSVKRFKE--MGK 396 (403)
Q Consensus 326 ~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~----~~-~~~vv~l~~p--e~~~~R~~~R~~~--~g~ 396 (403)
.+.+ ...+ .++.+|..+|++.... ...+.+ +.. .+ .+.+++++.| +++.+|+.+|..+ .+.
T Consensus 77 ~~~~----~~~i-~~~~~g~~vIl~gg~~--~~~~~~---~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~ 146 (253)
T 2ze6_A 77 HRRL----IFEV-DWRKSEEGLILEGGSI--SLLNCM---AKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIR 146 (253)
T ss_dssp HHHH----HHHH-HTTTTSSEEEEEECCH--HHHHHH---HHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHH----HHHH-HHHhCCCCeEEeccHH--HHHHHH---HhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcC
Confidence 1122 2233 4457888889986532 122222 222 22 5677888885 7899999999865 455
Q ss_pred cccc
Q 015668 397 EQIM 400 (403)
Q Consensus 397 ~Vp~ 400 (403)
.+++
T Consensus 147 ~~~~ 150 (253)
T 2ze6_A 147 EDRP 150 (253)
T ss_dssp SSSC
T ss_pred cccc
Confidence 4543
No 49
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.70 E-value=1.3e-07 Score=87.37 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=68.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~a 340 (403)
.+..|+++|+|||||||+|+.|++.+. +.++++|++..+....+. ........+... .......++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~ 87 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGS----ELGKKLKATMDAGKLVSDEMVLELIEKN 87 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCC----hhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 357899999999999999999999886 678888776443211110 000100111100 001112223222
Q ss_pred hc---CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 341 SR---TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 341 l~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+. .+..+|+|....+....+.+.+.+...+ .-.+|+++.+ +++++|...|.
T Consensus 88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 22 2467999974344443333333333322 4467899997 89999998884
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=5.4e-08 Score=87.66 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=65.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
..++|+++|+|||||||+++.+++.+. +.+++.|.+..+.. |..-...+....+..... ....++..+ ..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~~--g~~i~~~~~~~~~~~~~~---~e~~~l~~l-~~~ 94 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEERF--HKTVGELFTERGEAGFRE---LERNMLHEV-AEF 94 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHH---HHHHHHHHH-TTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHHh--CCcHHHHHHhcChHHHHH---HHHHHHHHH-hhc
Confidence 467999999999999999999999886 66788898766542 211000000000111111 112233333 356
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
.++||+........+. .++.+.. ...+|++++| +++++|+.
T Consensus 95 ~~~vi~~ggg~~~~~~-~~~~l~~--~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 95 ENVVISTGGGAPCFYD-NMEFMNR--TGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp SSEEEECCTTGGGSTT-HHHHHHH--HSEEEEEECCHHHHHHHHH
T ss_pred CCcEEECCCcEEccHH-HHHHHHc--CCEEEEEECCHHHHHHHHh
Confidence 7788885433222111 1223332 3467889887 89999998
No 51
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.69 E-value=3.6e-08 Score=102.71 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=78.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al 341 (403)
.+.+|+++|+|||||||+|+.|++.+.. ..+.+++.|.+++.+. +.. .+.. .....++.+. ..+..++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~--~~~---~f~~~er~~~l~~i~----~~~~~~l 441 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS--RGL---GFSKEDRITNILRVG----FVASEIV 441 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC--TTC---CSSHHHHHHHHHHHH----HHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc--ccc---cccHHHHHHHHHHHH----HHHHHHH
Confidence 4689999999999999999999887542 2367899999888753 321 1221 1111122221 2334455
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
+.|..||+|.+++++..|..+.+.+.+ ..+.+|++++| +++++|+.
T Consensus 442 ~~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 KHNGVVICALVSPYRSARNQVRNMMEE-GKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEEEECCGGGHHHHCC
T ss_pred hCCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEEEeCCHHHHHHHhh
Confidence 789999999999999887754443333 35678899887 89999975
No 52
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.65 E-value=1.7e-07 Score=84.30 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=67.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCcc-EEEe---ccHHHHHHhhcCCCcccCCChHHHHHHH---HHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR-YILL---GTNLILEQMKVPGLLRKHNYSERFQCLM---GRANAIFDVLLS 338 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~-~v~l---s~D~ir~~l~~~g~~~~~~~~~~~~~~~---~~a~~~~~~ll~ 338 (403)
+.+|+++|+|||||||+|+.|++.+.... ++.. ..+.+++.+...+. . .........+. .+.. .+...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~r~~-~~~~~i~ 80 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKK-K-DLLTPLTFSLIHATDFSD-RYERYIL 80 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTT-T-SCCCHHHHHHHHHHHHHH-HHHHTHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhcccc-c-cCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 46899999999999999999998775421 3222 12344443321110 0 01111111111 1111 1223344
Q ss_pred HHhcCCCeEEEeCCCCCHHHH-------HHHHHHHhcCC--cEEEEEECCh-HHHHHHHH-Hhc
Q 015668 339 RASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNFR--KIAVVVFPKP-EDLKIRSV-KRF 391 (403)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~-~R~ 391 (403)
.++..|..||+|....+.... ..+++.+.... .-.++++++| +++++|+. +|.
T Consensus 81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 456789999999754322111 12344444432 3356788887 89999998 775
No 53
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.63 E-value=2.2e-07 Score=85.23 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=65.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHH-HH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLL-SR 339 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll-~~ 339 (403)
.+.+|+++|+|||||||+|+.|++.+. +.+++.|.+.......+.. .+.....+... .......++ +.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~ 78 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTE----IGVLAKAFIDQGKLIPDDVMTRLALHE 78 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 357899999999999999999999886 6788887654332111110 00000000000 000001111 11
Q ss_pred Hhc-CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 340 ASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 340 al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
... .+..+|+|....+..... .+..+ ...-.++++++| +++++|..+|.
T Consensus 79 l~~~~~~~~vid~~~~~~~~~~-~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 79 LKNLTQYSWLLDGFPRTLPQAE-ALDRA--YQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp HHTCTTSCEEEESCCCSHHHHH-HHHTT--SCCCEEEEEECCHHHHHHHHTCEE
T ss_pred HhcccCCCEEEeCCCCCHHHHH-HHHHh--cCCCEEEEEECCHHHHHHHHHcCc
Confidence 111 467899999655543322 22222 123357888887 89999998874
No 54
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.63 E-value=1.6e-07 Score=81.55 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=62.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
.+|+++|+|||||||+++.|++.+. +.+++.|.+..... . .....+ . ..++.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~--~----------~~~~~~--------~-~~~l~~~~~ 57 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFELAKS--G----------NEKLFE--------H-FNKLADEDN 57 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHHHHTT--C----------HHHHHH--------H-HHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccccchh--H----------HHHHHH--------H-HHHHHhCCC
Confidence 5899999999999999999999876 56777776554321 0 011111 1 123467888
Q ss_pred EEEeCCC---------------CCHHHHHHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhc
Q 015668 347 FIIDQTN---------------VFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 347 vIlD~Tn---------------~~~~~R~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+|.|... +....+. .+... .+..+|++++| +++.+|+.+|.
T Consensus 58 vi~dr~~~~~~v~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 116 (173)
T 3kb2_A 58 VIIDRFVYSNLVYAKKFKDYSILTERQLR----FIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116 (173)
T ss_dssp EEEESCHHHHHHHTTTBTTCCCCCHHHHH----HHHHHHTTTEEEEEEECCHHHHHHHHHHHS
T ss_pred eEEeeeecchHHHHHHHHHhhHhhHHHHH----HHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 9998421 2222222 22221 24568888886 89999999984
No 55
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.62 E-value=1.1e-07 Score=83.96 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=61.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~ 345 (403)
+..|+++|+|||||||+|+.|++.+. +.+++.|.+++++. |..-...+...-+..... ....++..+... .
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~~~--g~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~-~ 75 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEKRT--GADIAWIFEMEGEAGFRR---REREMIEALCKL-D 75 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHH---HHHHHHHHHHHS-S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHc--CCChhhHHHHhCHHHHHH---HHHHHHHHHHhc-C
Confidence 56899999999999999999999886 67889999877653 321000000000111111 111233233333 3
Q ss_pred eEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668 346 NFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 346 ~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~ 387 (403)
++|++. +.+....|. .+... -.+|++++| +++++|+
T Consensus 76 ~~vi~~gg~~~~~~~~~~----~l~~~--~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 76 NIILATGGGVVLDEKNRQ----QISET--GVVIYLTASIDTQLKRI 115 (185)
T ss_dssp SCEEECCTTGGGSHHHHH----HHHHH--EEEEEEECCHHHHHHHH
T ss_pred CcEEecCCceecCHHHHH----HHHhC--CcEEEEECCHHHHHHHH
Confidence 345544 334444443 23322 366788887 8999999
No 56
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.62 E-value=4e-07 Score=80.20 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=67.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al 341 (403)
...+|+++|++||||||+++.|+..+. +..++.++.|.++..+.. . ..+.. ..+...++... ....+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~~~~~ 74 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-N----LGFSPEDREENVRRIAE----VAKLFA 74 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-T----CCSSHHHHHHHHHHHHH----HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh-c----cccccccHHHHHHHHHH----HHHHHH
Confidence 357899999999999999999988642 112566777776654321 1 11111 11222222211 111122
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~ 389 (403)
..+..++-+.++.+...|..+.+.+...+ ...+|++++| +++++|+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 75 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence 56666666666666555544333333333 5677899997 889999654
No 57
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.60 E-value=2.3e-07 Score=82.23 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=63.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------HHHHHhhcCCCcccCCChHHHHHHHHHH--HHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFDVL 336 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------~ir~~l~~~g~~~~~~~~~~~~~~~~~a--~~~~~~l 336 (403)
+|+++|+|||||||+++.|++.+...++.++++| .+++.+. .|. ...........+ .+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEE-----LDERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSC-----CCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCC-----CCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999986621124455544 2332221 221 111111111011 1223344
Q ss_pred HHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 337 LSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 337 l~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..++.++..+|+|.. ......-..+...+... ..-.+|++++| +++++|..+|.
T Consensus 76 i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~ 144 (195)
T 2pbr_A 76 IIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN 144 (195)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT
T ss_pred HHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC
Confidence 5556688999999942 22222111111112211 24467889887 89999998654
No 58
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.59 E-value=4.2e-07 Score=79.19 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=62.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
.+|+++|+|||||||+|+.|++.+. +.+++.|.++.++. |..-...+...-+...... ...++.. +. +..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~~--g~~~~~~~~~~~~~~~~~~---~~~~~~~-l~-~~~ 72 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHTS--GMTVADVVAAEGWPGFRRR---ESEALQA-VA-TPN 72 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH--CSCHHHHHHHHHHHHHHHH---HHHHHHH-HC-CSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHHh--CCCHHHHHHHcCHHHHHHH---HHHHHHH-hh-cCC
Confidence 4789999999999999999999876 67888898876652 3210000000001111111 1122222 33 456
Q ss_pred EEEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH--Hh
Q 015668 347 FIIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV--KR 390 (403)
Q Consensus 347 vIlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~--~R 390 (403)
+||+... +.+..+. .+.. .-.+|++++| +++++|.. .|
T Consensus 73 ~vi~~g~~~~~~~~~~~----~l~~--~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQ----FMRA--HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp EEEECCTTGGGSHHHHH----HHHH--HSEEEEEECCHHHHHHHHHHHHC
T ss_pred eEEECCCcEEeCHHHHH----HHHc--CCeEEEEECCHHHHHHHHhhccC
Confidence 7777432 3444333 2222 1356788887 89999998 77
No 59
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.52 E-value=1.8e-07 Score=85.04 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=63.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~ 342 (403)
.|+++|+|||||||+|+.|++.+. +.++++|++. +.+. .|.. .......+... ....+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~ 73 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVK-SGSE----LGKQAKDIMDAGKLVTDELVIALVKERIA 73 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHH-HTCT----TTGGGHHHHHHTCCCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHH-cCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence 478999999999999999999875 6778887654 4332 1210 01110111100 00112223333333
Q ss_pred C---CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 343 T---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
. +..+|+|......... +.+...+ .-.++++++| +++++|..+|.
T Consensus 74 ~~~~~~~~i~dg~~~~~~~~----~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 74 QEDCRNGFLLDGFPRTIPQA----DAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp SGGGGGCEEEESCCCSHHHH----HHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred ccccCCCEEEeCCCCCHHHH----HHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 3 3579999853333322 2233322 3467888887 89999998875
No 60
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.51 E-value=1.8e-07 Score=82.76 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=61.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH-HHHhhcCCCcccC----CChHH-HHHHHHHHHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI-LEQMKVPGLLRKH----NYSER-FQCLMGRANAIFDVLLS 338 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i-r~~l~~~g~~~~~----~~~~~-~~~~~~~a~~~~~~ll~ 338 (403)
.+|+++|+|||||||+|+.|++.++.. .+.+++.|++ ++.+...+..... ..... ....... +...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~ 77 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQID----AAKGIA 77 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHH----HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHH----HHHHHH
Confidence 579999999999999999999876532 2567776654 3333112211100 01111 0111111 112234
Q ss_pred HHh--cCCCeEEEeCCCC--CHHH-----HHHHHHHHhcCCcEEEEEECCh-HHHHHH-HHH
Q 015668 339 RAS--RTPRNFIIDQTNV--FKSA-----RKRKLRLFVNFRKIAVVVFPKP-EDLKIR-SVK 389 (403)
Q Consensus 339 ~al--~~g~~vIlD~Tn~--~~~~-----R~~~~~~~~~~~~~~vv~l~~p-e~~~~R-~~~ 389 (403)
.++ ..+..||+|.... ++.. ...+++.+ ..-.++++++| +++++| ..+
T Consensus 78 ~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~l~~~~~~~~~rr~~~ 136 (194)
T 1nks_A 78 EEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI---NPSVIFLLEADPKIILSRQKRD 136 (194)
T ss_dssp HHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH---CCSEEEEEECCHHHHHHHHHHC
T ss_pred HHhhccCCCEEEECCchhhccccccccCCCHHHHHhc---CCCEEEEEeCCHHHHHHHHHhh
Confidence 445 7889999997421 1100 01223322 23457788886 666644 766
No 61
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.50 E-value=2e-07 Score=82.38 Aligned_cols=38 Identities=37% Similarity=0.490 Sum_probs=32.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~ 40 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR 40 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH
Confidence 3589999999999999999999876 6788999987665
No 62
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.49 E-value=1.8e-07 Score=81.20 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-ccC--CChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~~~--~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.|+++|+|||||||+|+.|++.+. +.+++.|.+...+. |.. +.. .+.. ...... ...++. .+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~--g~~~~~~~~~~~~---~~~~~~---~~~~l~-~l~~~ 69 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKRE--GLSIPQIFEKKGE---AYFRKL---EFEVLK-DLSEK 69 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH--TSCHHHHHHHSCH---HHHHHH---HHHHHH-HHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHc--CCCHHHHHHHhCh---HHHHHH---HHHHHH-HHhcc
Confidence 589999999999999999999876 56788898766542 311 000 0010 111111 112232 23334
Q ss_pred CeEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+||+. ..+.+..+. .+... -.+|++++| +++++|..+|.
T Consensus 70 ~~~Vi~~g~~~~~~~~~~~----~l~~~--~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 70 ENVVISTGGGLGANEEALN----FMKSR--GTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSEEEECCHHHHTCHHHHH----HHHTT--SEEEEEECCHHHHHHHCBCTT
T ss_pred CCeEEECCCCEeCCHHHHH----HHHcC--CEEEEEECCHHHHHHHHhCCC
Confidence 4566652 234444333 23332 367788887 89999998764
No 63
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.48 E-value=4.8e-07 Score=80.45 Aligned_cols=116 Identities=10% Similarity=0.024 Sum_probs=57.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------HHHHHhhcCCCcccCCChHHHHHH---HHHHHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCL---MGRANAIFDV 335 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------~ir~~l~~~g~~~~~~~~~~~~~~---~~~a~~~~~~ 335 (403)
+|+++|+|||||||+++.|++.+...++.++.++ .+++.+. .+.. .+..... ..+. ..+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~~~~~~r~-~~~~~ 74 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EEEV-----TPKAELFLFLASRN-LLVTE 74 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHH-HSCC-----CHHHHHHHHHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHH-hcCC-----CHHHHHHHHHHHHH-HHHHH
Confidence 6899999999999999999987622113333321 2333322 1211 1111111 1111 11223
Q ss_pred HHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 336 LLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 336 ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+..++.+|..||+|.. ++.......+........ .-.++++++| +++++|..+|.
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 143 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC
Confidence 3344678999999942 333433332221122222 4567788887 89999999884
No 64
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.47 E-value=1.1e-06 Score=81.32 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=68.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------HHHHHhhcCCCcccCCChHHHHHHHHHHHH--H
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLMGRANA--I 332 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~--~ 332 (403)
....+|++.|+|||||||+++.+++.+.. ...++.+. .+++.+ ..+.. ..+.-..+.-.+.+ .
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~-~~~~~----~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIV-LEGND----MDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHT-TC-------CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998763 22222221 223322 12210 11111111111111 0
Q ss_pred HHHHHHHHhcCCCeEEEe----------C--CCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 333 FDVLLSRASRTPRNFIID----------Q--TNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD----------~--Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
+.+.+..++.+|..||+| . .++...... ++..+.. .. +-.++++++| +++++|..+|..
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~-~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~ 171 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVR-ALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 171 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHH-HHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHH-HHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 112234556789999999 3 245555444 3444432 22 5567889887 899999999853
No 65
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.47 E-value=3.2e-07 Score=83.82 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=63.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH-hhcCCCcccCCChHHHHHHH--------HHHHHHH-H
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIF-D 334 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~-l~~~g~~~~~~~~~~~~~~~--------~~a~~~~-~ 334 (403)
.+.+|+++|+|||||||+++.|++.+. +.+++.|.+... .. .+.. .+......+ +.....+ .
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~ 75 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIA-AGSE----NGKRAKEFMEKGQLVPDEIVVNMVKE 75 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHH-HTCH----HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHH-cCCc----hhHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 356899999999999999999999886 678988775433 21 1100 000000000 0000101 1
Q ss_pred HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+....+ .+..+|+|........ ++.+...+ .-.+|+++++ +++.+|...|.
T Consensus 76 ~~~~~~~-~~~~~vidg~~~~~~~----~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 76 RLRQPDA-QENGWLLDGYPRSYSQ----AMALETLEIRPDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp HHHSHHH-HHTCEEEESCCCSHHH----HHHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred HHhhccc-cCCcEEEECCCCCHHH----HHHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1111111 2345777974443322 22233322 3467899997 89999998775
No 66
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.43 E-value=2.4e-07 Score=81.83 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir 304 (403)
..+|+++|+|||||||+++.|++.++..+ +.+++.|++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 35899999999999999999998765322 5667766543
No 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.42 E-value=6.4e-07 Score=79.59 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=62.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh-CCCccEEEeccHHHHHHhhcCCCcccCCChHH-H-HHHHHHHHHHHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD-HPEKRYILLGTNLILEQMKVPGLLRKHNYSER-F-QCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~-~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~-~~~~~~a~~~~~~ll~~al 341 (403)
.+..|+++|+|||||||+++.|++. +. +.+++.|.+..+......... .+... . ....+...+ .++..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~----~l~~~~ 80 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKENHFYTEYDT-ELDTHIIEEKDEDRLLD----FMEPIM 80 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHHTTCSCC-------CCCCCHHHHHHHHH----HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHHhhhhhhHHH-HhhhcccCCCCHHHHHH----HHHHHH
Confidence 3578999999999999999999998 54 888999987655321111100 00000 0 000111111 122233
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+..+|+|..+.. .+.....-.+|++++| +++++|..+|.
T Consensus 81 ~~~g~~vi~~~~~~---------~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 81 VSRGNHVVDYHSSE---------LFPERWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp TSSSEEEEECSCCT---------TSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred hccCCEEEeCchHh---------hhhhccCCEEEEEECCHHHHHHHHHhCC
Confidence 23446788865431 1221112257788887 89999999884
No 68
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.40 E-value=1.1e-06 Score=92.51 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=80.6
Q ss_pred cEEeCcCCCCCCeEEcCCCceEEecC----------------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCC
Q 015668 43 RVVLNPADCDLDFDIEDNGLKSSGLH----------------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106 (403)
Q Consensus 43 ~v~l~~~d~~~~l~is~d~l~~~~~~----------------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~ 106 (403)
.|+|||...+ +|.||+|+.+|+... ...|.. +..|.+.-++.+|++||||.|.+
T Consensus 411 ~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~-~~~VLg~~~f~sGrhyWEV~v~~-------- 480 (602)
T 4b3n_A 411 DVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNY-CTGVLGSQSITSGKHYWEVDVSK-------- 480 (602)
T ss_dssp CCCEECCSCC-SCEECTTSSEEECCCC--------------------C-CCCEEESSCBSSSEEEEEEECTT--------
T ss_pred EEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCC-CCEeccCCCCCCEEEEEEEEECC--------
Confidence 5899999887 699999999986431 123333 56789999999999999999863
Q ss_pred CCCCCCCcEEEEEecCCCC--------CCCCCCCCcceeEe-cCCce---eeCCCc-ccCCC---CCC---CCCEEEEEE
Q 015668 107 TPPDQQHVCRVGTSRGDDP--------VGKLGETEQSFGFG-GTGKF---SHGGNF-LNFGE---KFG---VGDTIICAI 167 (403)
Q Consensus 107 ~~~~~~~~~rVG~s~~~~~--------~~~lG~d~~Sygy~-~~G~~---~~~~~~-~~yG~---~f~---~gDVIGc~l 167 (403)
...+.||++..... ...++.+..+|+.. .+|.. +|+... ....+ +.. .=..||++|
T Consensus 481 -----~~~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~l 555 (602)
T 4b3n_A 481 -----KSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFV 555 (602)
T ss_dssp -----CSCEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEE
T ss_pred -----CeeEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEE
Confidence 35689999863211 22456666788875 45543 233322 12221 111 125799999
Q ss_pred ecCCCCCceEEEEe
Q 015668 168 DLESKPLATIGFAK 181 (403)
Q Consensus 168 dl~~~p~~~i~ftk 181 (403)
|.+. +.|+|+-
T Consensus 556 d~~~---g~~sFy~ 566 (602)
T 4b3n_A 556 DYEA---CTVSFFN 566 (602)
T ss_dssp ETTT---TEEEEEE
T ss_pred ecCC---CEEEEEe
Confidence 9998 8999984
No 69
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.39 E-value=1e-06 Score=79.53 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=64.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--------------------ccEEEeccHHHHHHhhcCCCccc---C---CC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--------------------KRYILLGTNLILEQMKVPGLLRK---H---NY 318 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--------------------~~~v~ls~D~ir~~l~~~g~~~~---~---~~ 318 (403)
...+|+++|+|||||||+++.|++.++. ..+..++.|.+.+.+. .|..-. . .|
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK-EGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-TTCEEEEEEETTEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH-cCCCEEeHHhCCCee
Confidence 4678999999999999999999988853 1244556666654432 221100 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEEC-Ch-HHHHHHHHHhcc
Q 015668 319 SERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFP-KP-EDLKIRSVKRFK 392 (403)
Q Consensus 319 ~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~p-e~~~~R~~~R~~ 392 (403)
.... ..+..+++.|.+||+|.+. ...+. + ...+. ...+||+. ++ +++.+|+.+|..
T Consensus 90 ~~~~------------~~i~~~l~~g~~vi~d~~~---~~~~~-l--~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~ 149 (204)
T 2qor_A 90 GTLK------------SEYDLAVGEGKICLFEMNI---NGVKQ-L--KESKHIQDGIYIFVKPPSIDILLGRLKNRNT 149 (204)
T ss_dssp EEEH------------HHHHHHHHTTCEEEEECCH---HHHHH-H--HHCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred cCCH------------HHHHHHHHcCCeEEEEECH---HHHHH-H--HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence 1100 1222334789999999632 11111 1 12232 34667775 55 899999988864
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.37 E-value=2.7e-07 Score=81.39 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=61.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH--HHHHHHHHHHHHHHHHHHHHhc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~--~~~~~~~~a~~~~~~ll~~al~ 342 (403)
...+|+++|+|||||||+++.+++.+. +.+++.|.+..+...........+.. ..+.+.+.+ ...+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 78 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL--------DNQMR 78 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHH--------HHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHH--------HHHHh
Confidence 356889999999999999999999876 67788888766542211111100000 011122221 12223
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.|. +|+|.-+.. .+.....-.+|+++++ +++++|+.+|.
T Consensus 79 ~g~-~vv~~~~~~---------~~~~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 79 EGG-VIVDYHGCD---------FFPERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp HCC-EEEECSCCT---------TSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred cCC-EEEEechhh---------hcchhcCCEEEEEECCHHHHHHHHHHcC
Confidence 353 455654321 0111113467789887 89999999885
No 71
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.37 E-value=3.7e-07 Score=80.16 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~ 346 (403)
..|+++|+|||||||+|+.|++.+. +..++.|.+++... |..-...+...-....... ...++.. +.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~~--g~~~~~~~~~~g~~~~~~~---~~~~~~~-l~~~~~ 75 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQKF--NQKVSEIFEQKRENFFREQ---EQKMADF-FSSCEK 75 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHH--TSCHHHHHHHHCHHHHHHH---HHHHHHH-HTTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHHc--CCCHHHHHHHcCHHHHHHH---HHHHHHH-HHccCC
Confidence 3688999999999999999999886 67889998876542 3210000000000111111 1122322 234456
Q ss_pred EEEeCCC-CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668 347 FIIDQTN-VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 347 vIlD~Tn-~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R 390 (403)
+||+... ..-. +. ++.. -.+|++++| +++.+|..+|
T Consensus 76 ~vi~~g~~~~~~-~~-----l~~~--~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 76 ACIATGGGFVNV-SN-----LEKA--GFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp EEEECCTTGGGS-TT-----GGGG--CEEEEEECCHHHHTTCCCGG
T ss_pred EEEECCCCEehh-hH-----HhcC--CEEEEEeCCHHHHHHHHhcc
Confidence 6676432 1111 11 2322 356788887 8899998877
No 72
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.36 E-value=2.6e-06 Score=75.41 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=68.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
..++|+++|+|||||||+++.++.. +..+.+.++.|.++.... .+....+....... ...+.+.+..........+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~l~~~~~~~~~~~ 83 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQ--NRMIMQIAADVAGRYAKEG 83 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC-SSCCCTTSSSHHHH--HHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh-cccccCCccchhhh--hHHHHHHHHHHHHHHhccC
Confidence 3689999999999999999999886 344578898888765432 11111111111100 1111111222222234567
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+++|...- ... ++.+.... ++..+++..+ +++++|...|.
T Consensus 84 ~~~~~~~~~~-~~~----l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 84 YFVILDGVVR-PDW----LPAFTALARPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp CEEEECSCCC-TTT----THHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred CeEEEeccCc-HHH----HHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence 7899998532 111 22233222 5566777776 88999998885
No 73
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.32 E-value=4.4e-06 Score=77.33 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.9
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHhc-
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRASR- 342 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al~- 342 (403)
+-+.|+|||||||.|+.|++.+. +.+|+++++ |+.+. .+. ..+.....+++.- ......++...+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~-~~t----~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~ 82 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVK-AGT----PLGVEAKTYMDEGKLVPDSLIIGLVKERLKE 82 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHH-TTC----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHS
T ss_pred eeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhcc-CCC----hHHHHHHHHHhhccccccHHHHHHHHHHHhC
Confidence 46789999999999999999886 788998654 54432 121 0011111111100 0111122322222
Q ss_pred --CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
....+|||.---+.. +.. .+.+.. .-.+++|++| +++++|+..|.
T Consensus 83 ~~~~~g~ILDGfPRt~~-Qa~---~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 83 ADCANGYLFDGFPRTIA-QAD---AMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp GGGTTCEEEESCCCSHH-HHH---HHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred cccCCCeEecCCCCcHH-HHH---HHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 245799998433332 222 233333 3467899998 89999999995
No 74
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.32 E-value=9.2e-07 Score=79.69 Aligned_cols=120 Identities=16% Similarity=0.084 Sum_probs=59.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEec-----c---HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG-----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AI 332 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls-----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~ 332 (403)
.+.+|+++|+|||||||+++.|++.++... ...+. + +.+++.+. .+. .+........-.+. +.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~r~~~ 82 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQ-KKS----DVEDHSVHLLFSANRWEQ 82 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TSS----CCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHh-cCC----CCCHHHHHHHHHHHHHHH
Confidence 357999999999999999999998653211 22221 1 12343332 111 11111111100000 01
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHh
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R 390 (403)
+ ..+..++..+..||+|....+.-.+ ..++..+... ..-.+|++++| +++++|+.+|
T Consensus 83 ~-~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 83 V-PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp H-HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred H-HHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 1 2344456789999999532111111 1234333322 13457888887 8899998654
No 75
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.30 E-value=1.1e-06 Score=76.53 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=33.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
..++.|+++|.|||||||+|+.|++.+. +.++++|.+..+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~ 45 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISER 45 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 3578999999999999999999999876 6678889876654
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.29 E-value=2.6e-06 Score=74.15 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
..+|+++|+|||||||+++.++..+. +.+++.|.+..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHHHH
Confidence 46799999999999999999999886 6788888876554
No 77
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.26 E-value=5.6e-06 Score=86.19 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc---cEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a 340 (403)
..++|+|+|++||||||+++.|+..+... .+..++.|.+++.+. +.. .+.. .......++.. +....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~--~~l---~f~~~~r~~~~r~i~~----v~q~l 438 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS--SEL---GFSKAHRDVNVRRIGF----VASEI 438 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT--SSC---CCSHHHHHHHHHHHHH----HHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc--ccc---CCCHHHHHHHHHHHHH----HHHHH
Confidence 46899999999999999999999876421 245689998887642 111 1222 11112222221 22222
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~ 388 (403)
...+..+|..........|+...+.+...+.+.+|++++| +++.+|..
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence 3455566665554456667666666666556788999998 89999875
No 78
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.20 E-value=7.2e-07 Score=80.33 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=61.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEecc--------HHHHHHhhcCCCcccCCChHH-HHHHHHHHH-HH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AI 332 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~--------D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~-~~ 332 (403)
.+.+|+++|+|||||||+++.|++.+.... ...+.. +.+++.+. .+. ..... ...+..... +.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~ 83 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK-MEN----SMSNETIHLLFSANRWEH 83 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TSS----CCCHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHh-cCC----CCCHHHHHHHHHHHHHHH
Confidence 367999999999999999999998654211 111110 11232221 110 11111 111111000 11
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCC----HHHH----HHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHh
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVF----KSAR----KRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~----~~~R----~~~~~~~~~-~-~~~~vv~l~~p-e~~~~R~~~R 390 (403)
++ .+..++..+..||+|....+ ...+ ..++..+.. . ..-.+|++++| +++++|..+|
T Consensus 84 ~~-~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 84 MN-EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HH-HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HH-HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 11 23344567889999975432 1122 123332222 1 23457888887 7888887655
No 79
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.3e-05 Score=67.36 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=97.8
Q ss_pred CCCCCeEEcCCCceEEecC-CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----
Q 015668 50 DCDLDFDIEDNGLKSSGLH-QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD---- 124 (403)
Q Consensus 50 d~~~~l~is~d~l~~~~~~-~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~---- 124 (403)
-+..++.|++|+.++.... ... .+-+=+.++.++..|. .|+|+|.+... .-.|.+++|+++.+-
T Consensus 12 ~hG~nI~L~~~~~~A~R~~~~~~--f~~givFS~rPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~ 80 (170)
T 2e63_A 12 RTGRLVSLSACGRTARRQQPGQE--FNHGLVLSREPLRDGR-VFTVRIDRKVN--------SWSGSIEIGVTALDPSVLD 80 (170)
T ss_dssp CCCSSEEECSSSCEEEESCTTTC--SCSCCEEEEEEECTTC-EEEEEEEEECC--------SSCCCCEEEEESSCTTSCC
T ss_pred ccCCCeEECCCCeEEEeCCCCcc--cCceEEEECCCCCCCC-EEEEEEEeecC--------CcceeEEEEEEccChhhcc
Confidence 4688999999999887642 112 3335577888898775 36777776521 135899999988541
Q ss_pred -CCCCCCCCCcceeEecCCceeeCCC--cccCCC---CCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCC
Q 015668 125 -PVGKLGETEQSFGFGGTGKFSHGGN--FLNFGE---KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG 198 (403)
Q Consensus 125 -~~~~lG~d~~Sygy~~~G~~~~~~~--~~~yG~---~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~ 198 (403)
|.....-...+|.+.+.+- .+++. .+.||. +...||+||..++-. +.++|..||+.+|+++. ..
T Consensus 81 lP~~~~~L~~~~Wv~~~~~v-~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~----G~l~~~iNg~~~g~~~~-~i---- 150 (170)
T 2e63_A 81 FPSSATGLKGGSWVVSGCSV-LRDGRSVLEEYGQDLDQLGEGDRVGVERTVA----GELRLWVNGRDCGVAAT-GL---- 150 (170)
T ss_dssp CCSSGGGCCSSEEEESSSEE-EESSCEEEESCSSCGGGCCSSCCEEEEECTT----SCEEEEESSCEEEEEEC-CC----
T ss_pred CCCChhhCCCCeEEEecccc-ccCCcccchhccccccccCCCCEEEEEEcCC----cEEEEEECCccceeeEc-CC----
Confidence 2122222346788865222 22222 357886 578999999998854 69999999999999875 11
Q ss_pred CccccchhhcccCCCceEeEEEEeCeEEEE
Q 015668 199 LGVVDSAVKERQCESAVFPHILLKNVVVVM 228 (403)
Q Consensus 199 l~~~~~~~~g~~~~~~~fP~v~l~~~~v~~ 228 (403)
..+||..|-+++....+
T Consensus 151 -------------p~~LwavvDvyG~t~~V 167 (170)
T 2e63_A 151 -------------PPRVWAVVDLYGKCTQI 167 (170)
T ss_dssp -------------CSCEEEEEECCTTEEEE
T ss_pred -------------CCcEEEEEEccCCEEEE
Confidence 35789988888654443
No 80
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.19 E-value=1.1e-05 Score=73.86 Aligned_cols=121 Identities=18% Similarity=0.096 Sum_probs=68.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc---------HHHHHHhhcCCCcccCCChHHHH---HHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQ---CLMGRANAIF 333 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~---------D~ir~~l~~~g~~~~~~~~~~~~---~~~~~a~~~~ 333 (403)
..+|++.|++||||||.++.+++.+...++-++.+ ..+++-+. .+.. ....+.-. ....++. .+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~-~~~~--~~~~~~~~~llf~a~R~~-~~ 81 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLL-APSD--EPMAADTELLLMFAARAQ-HL 81 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHH-SCCS--SCCCHHHHHHHHHHHHHH-HH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHh-cCCC--CCCCHHHHHHHHHHHHHH-HH
Confidence 57899999999999999999988775432212211 12444332 2311 01111111 1122222 23
Q ss_pred HHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
...+.-++.+|..||.|-- .+..+.-.. +..+. +. .+-.++++++| +++++|..+|.
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~-l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAA-LESFVQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 3455667789999999941 222221111 22222 22 25677899997 89999998884
No 81
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.15 E-value=9.9e-06 Score=77.08 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
..+.+|.++|.|||||||+|+.|++ +. +.+|++|.+..+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg---~~~id~D~~~~~ 111 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG---AYIIDSDHLGHR 111 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT---CEEEEHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC---CcEEehhHHHHH
Confidence 3578999999999999999999994 43 678888987443
No 82
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.10 E-value=7.3e-06 Score=73.41 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+|.++|.|||||||+++.++. +. +.+++.|.+..++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~~ 38 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHSF 38 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHGG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHHH
Confidence 4689999999999999999998 64 7788888875543
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.10 E-value=5.1e-07 Score=81.45 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=65.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccE--EEec---------cHHHHHHhhcCCCcccCCChHHHHHHHHHHHHH-HHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRANAI-FDV 335 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~-~~~ 335 (403)
+|+++|++||||||+++.|++.+...++ .++. .|.++..+. +........+....+.-.+.+. ...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALH--GEHGDLASSVYAMATLFALDRAGAVH 79 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEE--EEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHc--ccccccCCCHhHHHHHHHHHHhhhHH
Confidence 7899999999999999999987753222 1121 344554432 1100000011111111111110 012
Q ss_pred HHHHHhcCCCeEEEeCCCCCH----HHH---------HHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 336 LLSRASRTPRNFIIDQTNVFK----SAR---------KRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~----~~R---------~~~~~~~~----~~-~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+..++..+..||+|....+. ..+ ..++..+. .. ..-.++++++| +++++|+.+|..
T Consensus 80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 344456788999999865332 111 12333332 11 13457788887 899999999864
No 84
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.05 E-value=9.7e-06 Score=72.18 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=32.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
.+.+|.++|.+||||||+++.|++. . +.+++.|.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~~~~~ 44 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDALAAR 44 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccHHHHH
Confidence 4689999999999999999999987 3 678888986533
No 85
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.05 E-value=2.5e-05 Score=72.55 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=63.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE--EEecc--------HHHHHHhhcCCCcccCCChHHHHH---HHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQC---LMGRANAI 332 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~ 332 (403)
..+|++.|++||||||.++.+++.+...++ +++.. ..+++.+.. +.. .....+.-+. ...++ +.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~-~~~-~~~~~~~~e~lLf~A~R~-~~ 103 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKE-EHP-GEELQDITELLLVYAARV-QL 103 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHS-CCT-TSCCCHHHHHHHHHHHHH-HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhh-CCC-cccCCHHHHHHHHHHHHH-HH
Confidence 679999999999999999999877643221 12211 234444321 110 0011121121 11222 12
Q ss_pred HHHHHHHHhcCCCeEEEeC------------CCCCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 333 FDVLLSRASRTPRNFIIDQ------------TNVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~------------Tn~~~~~R~~~~~~~~-~~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
+...+.-++.+|..||.|- ..+..+.-.. +..+. +. .+-.+++|++| +++++|..+|.
T Consensus 104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~-l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQS-LKQTALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 3345566788999999993 1222221111 22222 22 25567889887 89999998885
No 86
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.04 E-value=1.2e-05 Score=72.33 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
..-.+|.++|.+||||||+++.|++.+. +.+++.|.+..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~ 49 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHE 49 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHH
Confidence 3467899999999999999999998754 788999987433
No 87
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.02 E-value=4.5e-05 Score=67.69 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+|+++|+|||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999876
No 88
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.02 E-value=3.1e-05 Score=75.52 Aligned_cols=35 Identities=11% Similarity=0.372 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+|+++|++||||||+|..|++.++ ..+||.|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC---CcEEccccc
Confidence 46999999999999999999999997 688999974
No 89
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.99 E-value=1.7e-05 Score=71.07 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+.|+++|++||||||++++|.+.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999999999988763
No 90
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.99 E-value=5e-05 Score=69.40 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccE--EEecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIF 333 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~ 333 (403)
..+|++.|++||||||.++.+.+.+...++ +++.. ..+|+-+............+.-+.+.=.|. +.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 368999999999999999999887653322 22211 124444431110000111222122111111 123
Q ss_pred HHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~----~~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
...+.-++.+|..||.|-- .+.. .|+..+. +. .+-.++++++| +++++|..+|.
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~----~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQ----HMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCH----HHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCH----HHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 3455667899999999951 1212 2333332 21 25567899997 89999999984
No 91
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.99 E-value=6.9e-06 Score=76.61 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=32.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc-------cEEEeccHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-------RYILLGTNLIL 304 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~-------~~v~ls~D~ir 304 (403)
.+.+|.++|.|||||||+|+.|++.+... ...+++.|.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 46899999999999999999999977621 24578888754
No 92
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.96 E-value=4.4e-05 Score=69.15 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+.+|.++|.+||||||+++.|++ +. +.++++|.+...+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~D~~~~~~ 41 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQV 41 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC---CEEEEccHHHHHH
Confidence 57899999999999999999987 54 6788888775543
No 93
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.94 E-value=7.3e-06 Score=74.23 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..++|+++|++||||||+++.|+..++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999998875
No 94
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.91 E-value=0.00017 Score=65.36 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=64.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEec-----c---HHHHHHhhcCCCcccCCChHHHHHH---HHHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-----T---NLILEQMKVPGLLRKHNYSERFQCL---MGRANAIFDV 335 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls-----~---D~ir~~l~~~g~~~~~~~~~~~~~~---~~~a~~~~~~ 335 (403)
.+|.+-|+.||||||.++.|++.+....-+++. + +.+|+.+. .+. ...+..+.+ ..++. .+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~-~~~----~~~~~~~~lLf~a~R~~-~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVL-EGN----DMDIRTEAMLFAASRRE-HLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHH-SSC----CCCHHHHHHHHHHHHHH-HHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHh-ccc----CCCHHHHHHHHHHHHHH-HHHH
Confidence 578999999999999999998877432112221 1 23454443 221 111221211 11221 2334
Q ss_pred HHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668 336 LLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 336 ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+.-++.+|..||.|-- .+..+.-..+.+.+.+. .+=.+++++.| +++++|..+|..
T Consensus 77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 45567899999999941 12222111111111121 24467789886 899999988754
No 95
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.91 E-value=4.2e-05 Score=68.59 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
.+|.++|+|||||||+++.++. +. +.+++.|.+...
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg---~~~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG---VPLVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC---CcccchHHHHHH
Confidence 5789999999999999999987 54 677888887544
No 96
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.90 E-value=3.1e-05 Score=72.60 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT-P 344 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~-g 344 (403)
.+.|+++|+|||||||+++.++..+. +.++++|.+.+... .|..-..-+...-+...... ..+.+..++.. .
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~~~~-~g~~i~~i~~~~ge~~fr~~---e~~~l~~l~~~~~ 120 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIEQAM-KGTSVAEIFEHFGESVFREK---ETEALKKLSLMYH 120 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHS-TTSCHHHHHHHHCHHHHHHH---HHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHHHHh-cCccHHHHHHHhCcHHHHHH---HHHHHHHHHhhcC
Confidence 46799999999999999999999886 77888888766542 12110000000001111111 11222222333 3
Q ss_pred CeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668 345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (403)
Q Consensus 345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~ 389 (403)
..||.+. +-.....+. .+.. -.+||++++ +++.+|..+
T Consensus 121 ~~Via~GgG~v~~~~~~~----~l~~---~~vV~L~a~~e~l~~Rl~~ 161 (250)
T 3nwj_A 121 QVVVSTGGGAVIRPINWK----YMHK---GISIWLDVPLEALAHRIAA 161 (250)
T ss_dssp SEEEECCGGGGGSHHHHH----HHTT---SEEEEEECCHHHHHHHHHC
T ss_pred CcEEecCCCeecCHHHHH----HHhC---CcEEEEECCHHHHHHHHhh
Confidence 4455443 333343333 2332 357899887 899999875
No 97
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.87 E-value=8.1e-05 Score=66.23 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+.+|+++|+|||||||+++.|++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 56899999999999999999999873
No 98
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.80 E-value=8.9e-06 Score=76.26 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..+.+|++.|++||||||+++.|++.+.. +.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEe
Confidence 45789999999999999999999999854 55553
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.80 E-value=7.4e-05 Score=66.55 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+++.++..++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998875
No 100
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.79 E-value=4.9e-05 Score=70.35 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+++|+++|+|||||||+++.+++.+. ...++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~ 62 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFL 62 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence 68999999999999999999998775 4455555543
No 101
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.79 E-value=3e-05 Score=71.66 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=63.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCc----c--EEEec----c---HHHHHHhhcCCCcccCCChHHHHHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK----R--YILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRANA 331 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~----~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~ 331 (403)
...+|++.|++||||||.++.+++.+... + ++.+. + ..+++-+. .+... ......-....++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~-~~~~~--~~~~~llf~a~R~~- 99 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL-NQPMD--LETEALLMFAGRRE- 99 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHH-HSCCC--HHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHH-cCCCC--HHHHHHHHHHHHHH-
Confidence 46799999999999999999998877532 1 22221 1 12444332 22110 00000011112221
Q ss_pred HHHHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668 332 IFDVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 332 ~~~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
.+...+.-++.+|..||.|-- .+..+.-..+.+.+.+. .+-.+++++.| +++++|..+|.
T Consensus 100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 100 HLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 223445567789999999931 22222222111111222 25677899987 88999988874
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.78 E-value=2.2e-05 Score=69.57 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+++.++|++||||||+++.++..++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997765
No 103
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.67 E-value=0.0003 Score=64.10 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=33.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
..+-.|-|+|.+||||||+++.+.+ +. +.+++.|.+..++
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g---~~vidaD~ia~~l 46 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RG---ASLVDTDLIAHRI 46 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CC---CcEEECcHHHHHH
Confidence 3467889999999999999999987 54 7889999875554
No 104
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.64 E-value=0.0002 Score=64.60 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=60.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccC--CChHHHH-HH-------------HHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH--NYSERFQ-CL-------------MGRAN 330 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~--~~~~~~~-~~-------------~~~a~ 330 (403)
.+|.+.|++||||||+++.|++.+. +..++.+.+++.....|..... .+..... .. .+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN---IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT---CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC---cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 5899999999999999999999997 6777744443321123321110 0000000 00 00011
Q ss_pred HHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 331 AIFDVLLSRASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 331 ~~~~~ll~~al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
....+++..+.. ...++|++.+-.. ++ +.+......||+.++ +++.+|..+|.
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~------~v--l~~~~~~~~V~L~A~~e~r~~R~~~~~ 138 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAE------EI--LSDNPNMISAFILGDKDTKTKRVMERE 138 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHH------HH--TTTCTTEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcc------hh--cCCCCCeEEEEEECCHHHHHHHHHHHh
Confidence 122333333331 4557888876321 12 333224566788886 88999987763
No 105
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.63 E-value=0.00047 Score=61.97 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=59.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCcc--EEEec----c---HHHHHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLL 337 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll 337 (403)
+|++-|+.||||||.++.|++.+...+ ++... + ..+++.+. .. ...+....+.-.+ .......+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~-----~~~~~~~~ll~~a~r~~~~~~I 75 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EE-----EVTPKAELFLFLASRNLLVTEI 75 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cc-----cCChHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999887664322 22221 1 23344332 11 1112111111111 11122345
Q ss_pred HHHhcCCCeEEEeCCCCCHHHH--------HHHHHHH---h-c-CCcEEEEEECCh-HHHHHHHHHhcc
Q 015668 338 SRASRTPRNFIIDQTNVFKSAR--------KRKLRLF---V-N-FRKIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~---~-~-~~~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.-++.+|..||.|--..+.-+. ..++..+ . . ..+-.+++++.| +++++|..+|++
T Consensus 76 ~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr 144 (197)
T 3hjn_A 76 KQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR 144 (197)
T ss_dssp HHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred HHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence 5678999999999521111111 1122222 2 1 224566788886 888888766654
No 106
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=0.00012 Score=65.25 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.++|+++|+|||||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999877
No 107
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.58 E-value=0.00045 Score=63.43 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=34.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG 311 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g 311 (403)
..+|.+.|.+||||||+|+.|++.+. +.+++.|.+++.....|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~~~~~a~~~g 56 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDILKLASEKSA 56 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHCC-
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHHHHHHHHHcC
Confidence 46899999999999999999999886 77888877665443344
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.56 E-value=0.00013 Score=66.79 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCCh--HHHHHHHH------HH---H
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMG------RA---N 330 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~--~~~~~~~~------~a---~ 330 (403)
..++++++|++||||||+.+.+....+. ...+.+.+-..+... ..|. .+.+. ..+..... .+ .
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e-~~gi--~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE-VHGE--HYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC-CBTT--TBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCccc-ccCc--eEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 4689999999999999999999987762 111112111001000 0010 01111 11111110 00 0
Q ss_pred H---HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhc
Q 015668 331 A---IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRF 391 (403)
Q Consensus 331 ~---~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~ 391 (403)
. .-...++.++..|+.+|+| +.+..++.+++.+. ..+.+++++. .+++.+|+..|.
T Consensus 92 ~~yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~Rl~~rG 151 (219)
T 1s96_A 92 NYYGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP--HARSIFILPPSKIELDRRLRGRG 151 (219)
T ss_dssp EEEEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHHHHHTTS
T ss_pred ccCCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHHHHHHcC
Confidence 0 0012344566889999999 88888877666655 2455555544 478888886654
No 109
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.55 E-value=0.00019 Score=66.09 Aligned_cols=121 Identities=11% Similarity=0.062 Sum_probs=58.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC-c--cEEE-e-cc------HHHHHHhhcCCCcccCCChHHHHH---HHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYIL-L-GT------NLILEQMKVPGLLRKHNYSERFQC---LMGRA 329 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~-~--~~v~-l-s~------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a 329 (403)
....+|++.|++||||||.++.+.+.+.. . ..+. . .. +.+|+-+.... . .....+. ...++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~---~--~~~~~e~llf~a~R~ 93 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQ---G--LDSLSELLFFIAMRR 93 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCS---S--CCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHH
Confidence 34789999999999999999999887653 1 1222 1 11 12444432111 1 2222221 12222
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCC----CHH-HH---HHHHHHHh----cCCcEEEEEECCh-HHHHHHHHHhc
Q 015668 330 NAIFDVLLSRASRTPRNFIIDQTNV----FKS-AR---KRKLRLFV----NFRKIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~Tn~----~~~-~R---~~~~~~~~----~~~~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
. .+.+.+.-++.+|..||.|--.. +.. .| ..|++.+. +..+=.+++++.| +++++|. +|.
T Consensus 94 ~-~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd 166 (223)
T 3ld9_A 94 E-HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN 166 (223)
T ss_dssp H-HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC------------
T ss_pred H-HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC
Confidence 2 23344556788999999996211 110 00 11233221 1124466788886 8888887 443
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=6.8e-05 Score=66.10 Aligned_cols=26 Identities=15% Similarity=0.463 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.++++++|++||||||+++.+...++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998765
No 111
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.00025 Score=65.28 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
+.+|++.|++||||||+++.|++.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999999853
No 112
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=97.18 E-value=0.0028 Score=55.55 Aligned_cols=135 Identities=11% Similarity=0.089 Sum_probs=84.9
Q ss_pred CCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCCC-CC
Q 015668 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPV-GK 128 (403)
Q Consensus 50 d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~~-~~ 128 (403)
.+..++.|+.|+.+++... . .+-+=+.++.++..|.- |+|+|.+... .-.|.++||+++.+ |. ..
T Consensus 14 ~~G~nI~L~~~~~~A~R~~--s--f~~givFS~RPl~~~E~-~~v~I~~~~~--------~wsG~l~~GvT~~d-P~~l~ 79 (168)
T 2yue_A 14 VHGDNIRISRDGTLARRFE--S--FCRAITFSARPVRINER-ICVKFAEISN--------NWNGGIRFGFTSND-PVTLE 79 (168)
T ss_dssp EECTTEEECCSSCCEEECS--C--SSCCEEEESSCCCSSCC-EEEEEEECCS--------SSSSCCEEEEESSC-GGGTT
T ss_pred ccCCCeEECCCCcEEEecc--c--CCceEEEECCCCcCCCE-EEEEEEeecC--------CcceeEEEeeeecC-HHHcC
Confidence 5688999999999887642 2 33456788888887643 6778776421 13588999999865 31 11
Q ss_pred CCCCCcceeEe----cCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccc
Q 015668 129 LGETEQSFGFG----GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDS 204 (403)
Q Consensus 129 lG~d~~Sygy~----~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~ 204 (403)
. +--+|+.. ..+-+. .....+|+ ..||+|+..++-. ++++|..||+..|.+++. +
T Consensus 80 ~--~lP~~a~~dL~~~~~~W~-~~l~~~~~---~~g~~l~f~v~~~----G~l~~~iNg~~~g~~~~~---V-------- 138 (168)
T 2yue_A 80 G--TLPKYACPDLTNRPGFWA-KALHEQYC---EKDNILYYYVNGA----GDVIYGINNEEKGVILTG---I-------- 138 (168)
T ss_dssp T--CCCSSSSSHHHHSTTBCC-EECCSTTC---CSSCEEEEEECTT----SEEEEEESSCEEEEEEEC---C--------
T ss_pred C--CCCCcCchHHhcCCCEEE-EEeccccc---cCCCEEEEEEcCC----CEEEEEECCCccEEEEcC---C--------
Confidence 1 11122210 111111 01122343 6799999999844 699999999999998751 1
Q ss_pred hhhcccCCCceEeEEEEeCe
Q 015668 205 AVKERQCESAVFPHILLKNV 224 (403)
Q Consensus 205 ~~~g~~~~~~~fP~v~l~~~ 224 (403)
| ...+||.-|-+++.
T Consensus 139 ~-----~~~pLwavvDvyG~ 153 (168)
T 2yue_A 139 D-----TRSLLWTVIDIYGN 153 (168)
T ss_dssp C-----CSSCCEEEEECCSS
T ss_pred C-----CCCceEEEEEccCC
Confidence 1 14578888888743
No 113
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.14 E-value=0.00026 Score=64.06 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
..+|.++|+|||||||+++.++..+. +.++++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCcceee
Confidence 35799999999999999999998765 67788887654
No 114
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.11 E-value=0.00044 Score=63.23 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=62.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec-c--H-----HHHHHhhcCCCcccCCChHHHHH---HHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-T--N-----LILEQMKVPGLLRKHNYSERFQC---LMGRANAIFD 334 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls-~--D-----~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~~ 334 (403)
..+|++.|++||||||.++.+.+.+... ...+. . + .+++-+. ... ....+.-.. ...++. ..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~-~~~~~ep~~~t~~g~~ir~~l~-~~~---~~~~~~~~~llf~a~R~~--~~ 77 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN-CKLLKFPERSTRIGGLINEYLT-DDS---FQLSDQAIHLLFSANRWE--IV 77 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS-EEEEESSCTTSHHHHHHHHHHH-CTT---SCCCHHHHHHHHHHHHHT--TH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEecCCCChHHHHHHHHHH-hcc---cCCCHHHHHHHHHHHHHH--HH
Confidence 5789999999999999999999988742 22221 1 1 1343332 111 011111111 112221 12
Q ss_pred HHHHHHhcCCCeEEEeCCC----CCHHHH------HHHHHHHhcCC--cEEEEEE-CCh-HHHHHHHHH
Q 015668 335 VLLSRASRTPRNFIIDQTN----VFKSAR------KRKLRLFVNFR--KIAVVVF-PKP-EDLKIRSVK 389 (403)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn----~~~~~R------~~~~~~~~~~~--~~~vv~l-~~p-e~~~~R~~~ 389 (403)
+.+.-++.+|..||.|--. ++...+ -.|+..+.... +=.++++ +.| +++++|..+
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~ 146 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF 146 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSS
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhcc
Confidence 3455677899999999622 221111 12333332222 4467788 987 778777543
No 115
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.10 E-value=0.0028 Score=57.20 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=62.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHh-hcCCCcc-----cCCChHHHHHHHHHHHHHHHHH--
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQM-KVPGLLR-----KHNYSERFQCLMGRANAIFDVL-- 336 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l-~~~g~~~-----~~~~~~~~~~~~~~a~~~~~~l-- 336 (403)
..+|+++|.|||||+|.|..+.+.+....+.+++. |.++++. ...|... ...|...+...+....+.++..
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~ 90 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 90 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 57999999999999999999987553222555555 5566433 2234321 1112222222222111111111
Q ss_pred ---HHHHhc--CCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHH
Q 015668 337 ---LSRASR--TPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRS 387 (403)
Q Consensus 337 ---l~~al~--~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~ 387 (403)
+..++. ...++|||..=- ..-++.|++ ++ .+.+|.+.++ +...+|.
T Consensus 91 ~~~~~~~~~~~~~~~vII~dvR~-----~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 91 GFFCRKIVEGISQPIWLVSDTRR-----VSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp TTTHHHHSBTCCCSEEEECCCCS-----HHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred hHHHHHHHHhcCCCcEEEeCCCC-----HHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 222222 234799998632 223555665 33 5778888886 6777774
No 116
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.07 E-value=0.00028 Score=62.79 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=31.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
+|.++|.+||||||+++.|++.++ +.+++.|.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHhh
Confidence 789999999999999999999876 6788889876543
No 117
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.05 E-value=0.00047 Score=61.72 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=32.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
....+|.++|.|||||||+++.++..++. +.+++.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCcc
Confidence 44689999999999999999999987732 778888865
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.05 E-value=0.0011 Score=57.81 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=53.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~ 342 (403)
.+.++++|+||+||||+++.++..+. +...+.++..++.+.+... ...... . .++ ..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~----~-----------~~~-~~~~ 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDEGKD----T-----------KFL-KTVL 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHHTCC----S-----------HHH-HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcCchH----H-----------HHH-HHhc
Confidence 57899999999999999999987653 2224455555555443210 000000 0 111 1124
Q ss_pred CCCeEEEeCCC---CCHHHHHHHHHHHhcC--CcEEEEEE
Q 015668 343 TPRNFIIDQTN---VFKSARKRKLRLFVNF--RKIAVVVF 377 (403)
Q Consensus 343 ~g~~vIlD~Tn---~~~~~R~~~~~~~~~~--~~~~vv~l 377 (403)
+...+|+|... ..+..+..+.+.+... ....+++.
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 67899999853 5566666555555432 23444444
No 119
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.03 E-value=0.00038 Score=64.44 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=33.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+.+|.+.|+|||||||+++.+++.+. +.+++.|.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHHH
Confidence 357899999999999999999999876 7789888875443
No 120
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.02 E-value=0.00033 Score=67.91 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
+.+|+++|++||||||+|..|++.++ ..+|+.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccch
Confidence 36899999999999999999999987 788888864
No 121
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00097 Score=60.07 Aligned_cols=27 Identities=11% Similarity=0.426 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..++|+++|++||||||+++.|.+.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999998875
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.0039 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...++++|.||+||||+|+.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4668899999999999999998875
No 123
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.80 E-value=0.00048 Score=62.88 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=17.3
Q ss_pred CceEEEEEccCCCChhHHHHHHH-HhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWV-KDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~-~~~ 290 (403)
..+++.++|++||||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35799999999999999999999 655
No 124
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.80 E-value=0.00072 Score=61.87 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
....+|.+.|+.||||||+++.++.. . ..+.+...+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~-g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-K-NDICLLTEP 53 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-T-TTEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-c-CCeEEEecC
Confidence 45789999999999999999999876 2 224444443
No 125
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.80 E-value=0.0008 Score=65.68 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
.+|+++|++||||||+|..|++.++ ..+|+.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence 5899999999999999999999987 688998875
No 126
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00087 Score=61.46 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
....+|.++|.|||||||+++.++..+. +.+++.|.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEc
Confidence 4467899999999999999999998775 678888887644
No 127
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.78 E-value=0.00087 Score=60.33 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=32.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
+.+|.++|.|||||||+++.+++.+. +.+++.|.+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence 35789999999999999999999886 678888887543
No 128
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.76 E-value=0.0011 Score=61.55 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=32.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
..+|.++|++||||||+++.+++.+. +..++++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i~r~ 64 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAIYRV 64 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCceehH
Confidence 57899999999999999999999886 677888877633
No 129
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.70 E-value=0.0028 Score=60.32 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=32.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+.+..+++.|+||+|||++|+.+++++.. .++.++...+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~-~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGI-NPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTC-CCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeHHHhh
Confidence 44678899999999999999999998753 46777665544
No 130
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.70 E-value=0.0012 Score=63.55 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=31.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.+.+|+++|++||||||+|..+++.++ ..+||.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP---VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccc
Confidence 467999999999999999999999987 67888885
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.64 E-value=0.0038 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...++++|.||+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998875
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.01 Score=56.37 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=33.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l 307 (403)
.+..|+++|+||+||||+|+.++.... ..++.++...+...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhHHHHhhh
Confidence 356789999999999999999999886 346777766665543
No 133
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.53 E-value=0.0015 Score=63.04 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=31.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
..+|+++|++||||||+|..+++.++ ..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence 46899999999999999999999987 688898863
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.0035 Score=60.22 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
..+++|+++|++||||||++..++..+. .+...+++.|.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4579999999999999999999986543 23466677664
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.46 E-value=0.0065 Score=57.37 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=27.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~ 302 (403)
...-++++|+||+||||+|+.+++.+. ...++.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 345689999999999999998877652 11366676554
No 136
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.41 E-value=0.0023 Score=57.16 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i 303 (403)
..+.+|.++|.+||||||+++.+...++ ...+++++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3468999999999999999999987542 122566667753
No 137
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.0059 Score=58.41 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=29.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~ 305 (403)
...++++|+||+||||+|+.++..+. ...++.++...+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 45688999999999999999987652 22367777665443
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.25 E-value=0.02 Score=55.78 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=55.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH----HHHHHhhc--CCCc----cc-CCChHHHHHHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN----LILEQMKV--PGLL----RK-HNYSERFQCLMGRANAI 332 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D----~ir~~l~~--~g~~----~~-~~~~~~~~~~~~~a~~~ 332 (403)
..++++.|.||+||||||..++.... ...+.++|.+ .+..++.. .+.. +. .-....|+.+...+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~--- 122 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF--- 122 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH---
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH---
Confidence 58999999999999999988875421 2335667664 34444321 1110 00 00112233222111
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEEC
Q 015668 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP 378 (403)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~ 378 (403)
.. +.....+|.|..+++...-+..++.++..+ .+.+|+++
T Consensus 123 -----~~-l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 123 -----DH-LSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -----HH-HHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -----HH-HhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 11 133456777777777665555566565433 45555543
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0044 Score=59.75 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
+.-|+|+|+||+|||++|+.++.++....++.++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 80 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH
Confidence 467899999999999999999998844446666554
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.13 E-value=0.0032 Score=56.46 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...++|.++|++||||||+++.++..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999987664
No 141
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.12 E-value=0.015 Score=58.55 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir 304 (403)
..-++++|+||+||||+|+.++..+ +...++.++...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5678899999999999999988754 23346677665543
No 142
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.10 E-value=0.003 Score=56.06 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=24.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+++++|.+||||||||.+++.. . ...+++.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT 31 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIAT 31 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEEC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEec
Confidence 3788999999999999999876 3 33566665
No 143
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.08 E-value=0.0047 Score=59.80 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=32.1
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i 303 (403)
...+.+|.++|++||||||+++.+...+. .....+++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34578999999999999999999987653 123677888863
No 144
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.02 E-value=0.0057 Score=59.49 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..+|.+-|+-||||||.++.|++.+..
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578889999999999999999988764
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.00 E-value=0.0089 Score=50.28 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=24.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
-|++.|.||+|||++|+.++.... .++.++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~ 59 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT--PWVSPAR 59 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS--CEECCSS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC--CeEEech
Confidence 378899999999999999987654 3555544
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.93 E-value=0.0026 Score=60.63 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=29.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCc----cEEEe-ccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK----RYILL-GTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~----~~v~l-s~D~ 302 (403)
..+.+|.++|.+||||||+|+.+...+... ..+.+ +.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 457899999999999999999998766421 13444 7775
No 147
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.90 E-value=0.0081 Score=57.65 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+.-|+++|+||+|||++|+.+++++.. .++.++...+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~~~l~ 88 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV 88 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEchHHHh
Confidence 467899999999999999999988753 46667665544
No 148
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.89 E-value=0.003 Score=60.12 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i 303 (403)
..+|.++|.+||||||+|+.|++.++. ..+.+|+.|.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 568999999999999999999886531 12577888864
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.88 E-value=0.0046 Score=55.13 Aligned_cols=37 Identities=35% Similarity=0.310 Sum_probs=28.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
..++|.++|++||||||+++.++..++. .+.++..|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~ 41 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDH 41 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCc
Confidence 4689999999999999999999886531 245565564
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.88 E-value=0.0095 Score=55.61 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=27.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
+.-++++|+||+||||+|+.++..+.. .++.++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~ 85 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGS 85 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehH
Confidence 456899999999999999999998864 35555443
No 151
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.87 E-value=0.0044 Score=61.75 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=29.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.+|+++|++||||||+|..|++.++ ..+||.|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCc
Confidence 5889999999999999999999987 57888886
No 152
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.80 E-value=0.0049 Score=63.37 Aligned_cols=28 Identities=0% Similarity=-0.069 Sum_probs=25.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
...+|+++|++||||||+|+.|++.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999863
No 153
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0061 Score=60.74 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=29.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.+.=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s~ 217 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGAE 217 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhHH
Confidence 3577899999999999999999998763 355565443
No 154
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.76 E-value=0.012 Score=59.22 Aligned_cols=40 Identities=13% Similarity=0.334 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.-|+|.|+||+|||++|+.++.++....++.++...+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4678999999999999999999988444577777665443
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.76 E-value=0.0059 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.++++++|++||||||+.+.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998754
No 156
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.73 E-value=0.0077 Score=57.63 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC---C-ccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~-~~~v~ls~D~ 302 (403)
...++|.++|++||||||+++.++..+. . ....+|+.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3468999999999999999999987543 2 2355666664
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.0091 Score=56.14 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=28.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
+.-+++.|+||+||||+|+.++..... .++.++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~ 88 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA-TFLNISAA 88 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEEST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeHH
Confidence 567899999999999999999998853 35556543
No 158
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.69 E-value=0.007 Score=54.56 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
...|+++|++||||||+|..|++... .+|+.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH----RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC----EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC----eEEecch
Confidence 57899999999999999999998764 5666664
No 159
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.66 E-value=0.014 Score=57.01 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=29.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
+.-|+|+|+||+|||++|+.++.++.. .++.++...+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~-~~~~v~~~~l~ 121 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV 121 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTC-EEEEEEHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-CEEEeeHHHHh
Confidence 355888999999999999999998753 46666655543
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.62 E-value=0.008 Score=53.16 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=30.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM 307 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l 307 (403)
..++++|.||+||||+|+.++..... ..++.++...+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 67889999999999999999876532 235556666655544
No 161
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.62 E-value=0.0051 Score=54.86 Aligned_cols=35 Identities=29% Similarity=0.154 Sum_probs=27.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.++++++|.|||||||++..++. ......+.++.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECC
Confidence 57999999999999999999987 223346666654
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.54 E-value=0.011 Score=54.30 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.3
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
++++|+||+||||+++.++..... .++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~-~~i~~~~~ 83 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV-PFITASGS 83 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-CEEEeeHH
Confidence 889999999999999999988763 45666543
No 163
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0071 Score=61.22 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
-++=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~ 278 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSE 278 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHH
Confidence 4678999999999999999999998763 356665544
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0085 Score=60.39 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.+.=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s~ 250 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPASG 250 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehhh
Confidence 4678999999999999999999998763 355665443
No 165
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0087 Score=60.17 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.++=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~~ 241 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGSE 241 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecch
Confidence 4677999999999999999999998763 355565443
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.036 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.+..++++|+||+||||+|+.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 167
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0075 Score=60.73 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=29.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
.++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~ 250 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQ 250 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhh
Confidence 4678999999999999999999998763 356665544
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.40 E-value=0.075 Score=53.35 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..+++++|.||+||||||..++.... ....++++.+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999988875432 2346667664
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.36 E-value=0.091 Score=50.74 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=26.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCc---cEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls 299 (403)
..++++|+||+||||+++.++..+... .++.++
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 388999999999999999998876532 345555
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.34 E-value=0.055 Score=52.21 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls 299 (403)
...++++|+||+|||++|+.+++.+... .++.++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 4688999999999999999999887632 344444
No 171
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.0097 Score=59.73 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=29.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
-+.=|+|.|+||+|||++|+.++.+... .++.++..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~ 251 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSE 251 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHH
Confidence 3678999999999999999999998763 356665543
No 172
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.31 E-value=0.018 Score=62.21 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir 304 (403)
..+.=|+|.|+||+|||++|+.++.++.. .++.++..++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~-~~~~v~~~~l~ 275 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPEIM 275 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTC-EEEEEEHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC-eEEEEEhHHhh
Confidence 34788999999999999999999998864 35666555543
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.29 E-value=0.0092 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..+++.++|+|||||||+++.++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999863
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.28 E-value=0.015 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.3
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
++++|+||+||||+++.++..... .++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~-~~i~~~~~ 107 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV-PFITASGS 107 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCC-CEEEecHH
Confidence 889999999999999999988763 46666543
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.27 E-value=0.06 Score=54.24 Aligned_cols=37 Identities=14% Similarity=0.357 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
...+++++|.||+|||||+..++.... ....++++.+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 357999999999999999998876432 2236666654
No 176
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.24 E-value=0.013 Score=55.04 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=24.9
Q ss_pred EEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
++|+|+||+||||+++.++..+.. ..+.++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-NFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-EEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-CEEEEE
Confidence 899999999999999999988764 345554
No 177
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.23 E-value=0.12 Score=51.01 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEE
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYI 296 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v 296 (403)
...+|.+-|.-||||||.++.|++.+....++
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv 79 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence 35678888999999999999999887644433
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.21 E-value=0.011 Score=52.74 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+++.++|++||||||+++.++.-++
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3468999999999999999999987764
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.19 E-value=0.0092 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCChhHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~ 287 (403)
..+++.++|++||||||+++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999887
No 180
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.18 E-value=0.012 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.162 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+|.++|++||||||+++.++..+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999987653
No 181
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.15 E-value=0.013 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=27.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l 298 (403)
..+++.++|+.||||||+.+.++..++..+-+.+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~ 65 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEE
Confidence 4689999999999999999999987764433333
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.15 E-value=0.056 Score=54.53 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=26.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..-++++|+||+||||+|+.+++.... .++.++
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~-~f~~l~ 82 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANA-DVERIS 82 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTC-EEEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCC-CeEEEE
Confidence 356899999999999999999998763 345554
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.14 E-value=0.026 Score=54.96 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.+.-|+++|+||+||||+|+.++..+.. .++.++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~-~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA-TFFSISAS 151 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC-EEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC-eEEEEehH
Confidence 3567899999999999999999998753 35666554
No 184
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.13 E-value=0.0093 Score=52.27 Aligned_cols=26 Identities=46% Similarity=0.620 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+.+++++|.+||||||++.++.+.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 56899999999999999999987653
No 185
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.10 E-value=0.013 Score=56.30 Aligned_cols=39 Identities=23% Similarity=0.047 Sum_probs=29.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~D~ 302 (403)
...++|.++|++||||||+++.++..++. ....++..|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 45799999999999999999999875431 2245555553
No 186
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.06 E-value=0.019 Score=55.21 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=27.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
...+++++|..||||||+.+.+......+++.+|-
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~ 37 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE 37 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence 36799999999999999999999765433444443
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.06 E-value=0.012 Score=51.74 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred hcCCCeEEEeC----CCCCHHHHHHHHHHHhcCCcEEEEEEC-C-hHHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ----TNVFKSARKRKLRLFVNFRKIAVVVFP-K-PEDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~----Tn~~~~~R~~~~~~~~~~~~~~vv~l~-~-pe~~~~R~~~R 390 (403)
+.+...+|+|- +++....++.+++.+.+.+...++... + +....++...|
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 57788999999 456677777777667664333444443 2 34555566655
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.05 E-value=0.05 Score=52.11 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...+++++|.||+||||||..++.... ....++++.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 358999999999999999999875421 2346667654
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.04 E-value=0.012 Score=52.77 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir 304 (403)
...++++|+||+||||+|+.+++.+.. ..++.++.+.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 567899999999999999999876531 235666655443
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.03 E-value=0.011 Score=50.25 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..+.++++|++|+||||+++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688899999999999999998765
No 191
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.02 E-value=0.011 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+++.++..++
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998775
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.01 E-value=0.031 Score=55.00 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
..-|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-~~~~v~~~~ 183 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-TFFNISAAS 183 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-EEEEECSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-cEEEeeHHH
Confidence 467899999999999999999998753 456665543
No 193
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.97 E-value=0.035 Score=53.13 Aligned_cols=107 Identities=10% Similarity=-0.034 Sum_probs=64.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.+.+|++-|.-||||||.++.+.+.+...++.++.+.. .+. ++.. ...++.....+-.+|
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~-------Pt~----------eE~~---~~yl~R~~~~LP~~G 144 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK-------PTE----------TERG---QWYFQRYVATFPTAG 144 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS-------CCH----------HHHT---SCTTHHHHTTCCCTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC-------cCh----------HHHh---chHHHHHHHhcccCC
Confidence 37899999999999999999999999876665543211 110 0000 001112232233789
Q ss_pred CeEEEeCCCCCHH------------HHHHHHHHHhc-------CC-cEEEEEECCh-HHHHHHHHHhc
Q 015668 345 RNFIIDQTNVFKS------------ARKRKLRLFVN-------FR-KIAVVVFPKP-EDLKIRSVKRF 391 (403)
Q Consensus 345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~-------~~-~~~vv~l~~p-e~~~~R~~~R~ 391 (403)
..+|.|-...+.- ...+.++.+.. .+ .+..++|+.+ ++.++|..+|.
T Consensus 145 ~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~ 212 (304)
T 3czq_A 145 EFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR 212 (304)
T ss_dssp CEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred eEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence 9999997543332 11122333222 23 4555788886 88999998875
No 194
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.96 E-value=0.035 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
+++.|+||+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998875
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.93 E-value=0.014 Score=55.83 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
..+++++++|++||||||+++.++..+. .+...+.+.|.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4579999999999999999999976543 22355566553
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.92 E-value=0.015 Score=56.33 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
..+++++++|++||||||+++.++..+. .+...+.+.|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4589999999999999999999876443 1235555555
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.92 E-value=0.012 Score=59.28 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=29.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
.+.+|+++|+||+||||.+.+|+..+.. +...+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4899999999999999999988764432 3467777774
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.89 E-value=0.015 Score=55.81 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
.+++|+++|++||||||+++.++..+. .+...+.+.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 578999999999999999999985443 2235556655
No 199
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.88 E-value=0.013 Score=52.40 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
.++++++|.|||||||+++.++.... ....++++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 47899999999999999999884321 1235566554
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.87 E-value=0.013 Score=53.99 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+.-++++|+||+||||+|+.++..+.. .++.++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeH
Confidence 345889999999999999999987642 2566654
No 201
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.86 E-value=0.021 Score=58.24 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=27.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
+.-|+|+|+||+||||+|+.++.+... .++.++..+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~-~f~~is~~~ 84 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANV-PFFHISGSD 84 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHH
Confidence 344889999999999999999987653 366665543
No 202
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.82 E-value=0.021 Score=52.35 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+.-++++|+||+||||+|+.++.++.. .++.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEET
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEech
Confidence 466889999999999999999987753 3555544
No 203
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.80 E-value=0.23 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
...-.|.++|.|++||||+.+++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44678999999999999999999864
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.74 E-value=0.015 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~ 291 (403)
-|++.|.||+|||++|+.++....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSST
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999988653
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.73 E-value=0.013 Score=59.04 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=28.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
.+.+|+++|++||||||++.+|+..+. .+...+++.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 489999999999999999988875443 2346667766
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.64 E-value=0.014 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+..++++|+||+||||+|+.++..+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46788999999999999999998874
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.63 E-value=0.015 Score=52.49 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh--CC------CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD--HP------EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~--~~------~~~~v~ls~D 301 (403)
..++++++|.|||||||++..++.. .+ ....+.++.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3579999999999999999999874 31 2345666554
No 208
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.61 E-value=0.017 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+..++++|+||+||||+|+.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999987653
No 209
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.61 E-value=0.019 Score=56.41 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
..+++|+|+|++||||||+++.++..+. .+...+.+.|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 4579999999999999999999986543 23355666663
No 210
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.57 E-value=0.021 Score=54.42 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ 302 (403)
.+++|+++|++||||||++..++..+. ++...+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 468999999999999999999976543 23466676664
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.018 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D 301 (403)
.++++++|.|||||||++.+++... .....+.++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5789999999999999998886532 12346667665
No 212
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.55 E-value=0.033 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=27.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..+.-++++|+||+||||+|+.+++.... .++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-PFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-CEEEEe
Confidence 34678999999999999999999987643 355553
No 213
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.52 E-value=0.021 Score=53.61 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+.-++++|+||+||||+|+.+++.+.. .++.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcc
Confidence 456789999999999999999988753 3566654
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.42 E-value=0.074 Score=53.58 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...++++.|.||+||||||..++.... +...+++|.+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 358999999999999999988865432 3347778775
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.40 E-value=0.019 Score=54.17 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~ 300 (403)
..++++++|.|||||||+++.++.... ....++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 358999999999999999998875442 113555554
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.023 Score=49.89 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++++|.+||||||+++++...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999987643
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.37 E-value=0.025 Score=58.56 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
....++++|+||+||||+|+.++..+.. .+..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 3568999999999999999999987753 355565443
No 218
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.34 E-value=0.033 Score=54.20 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=27.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
..-|+++|+||+|||++|+.+++.+.. .++.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~-~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDV-PFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEech
Confidence 456889999999999999999998753 3666644
No 219
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.32 E-value=0.024 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.+.+++++|.||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3568899999999999999887544
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.32 E-value=0.017 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
+++.++|++||||||+.+.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999998754
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.31 E-value=0.078 Score=54.03 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
...++++.|.||+||||||.+++.... ....++++.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 368999999999999999999876543 2346777765
No 222
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.023 Score=49.81 Aligned_cols=22 Identities=32% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
++++|+||+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.23 E-value=0.023 Score=58.26 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
..+.+|+++|+||+||||++.+|+..+. .+...+++.|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4578999999999999999999985432 2236677666
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.22 E-value=0.032 Score=56.29 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
+.-|+|+|+||+||||+|+.++..++. .++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence 345889999999999999999998864 3555644
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.20 E-value=0.026 Score=54.47 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
..+++|+++|++|+||||++..++..+. .+...+++.|.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4579999999999999999998876443 23467777664
No 226
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.12 E-value=0.029 Score=49.43 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
-.-|+++|.+|+||||+|..|.+.- +..++-|.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG----~~lvaDD~ 48 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG----HQLVCDDV 48 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT----CEEEESSE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CeEecCCE
Confidence 4678999999999999999998853 45565553
No 227
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.10 E-value=0.054 Score=50.09 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=28.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQ 306 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~ 306 (403)
.+|.++|.+||||||.|+.+...+. +.+++. +.++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~~ 39 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDA 39 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHHH
Confidence 5789999999999999999988765 555654 334443
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.06 E-value=0.1 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-++++|.||+||||+|+.++..+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 36889999999999999998875
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.02 E-value=0.031 Score=56.19 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=30.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D 301 (403)
..+.+|+++|++|+||||.+.+|+..+. +++..+++.|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4578999999999999999988875443 3347778777
No 230
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.01 E-value=0.024 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~ 288 (403)
..++++++|.|||||||++..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999999998875
No 231
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.01 E-value=0.066 Score=54.65 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~ 305 (403)
+.-|++.|+||+|||++|+.++.+.. ..++.++...+..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIMS 276 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEEEHHHHHT
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEEEchHhhh
Confidence 45689999999999999999999874 3577787666553
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.00 E-value=0.039 Score=50.90 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=27.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEecc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGT 300 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~ 300 (403)
.-|+++|.||+|||++|+.++..... ..++.++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 45788999999999999999987653 24677764
No 233
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.97 E-value=0.038 Score=53.99 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.-++++|+||+||||+|+.+++.+.. .++.++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC-CEEEec
Confidence 45889999999999999999998853 355554
No 234
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.96 E-value=0.031 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..++++++|++||||||+.+.+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 35899999999999999999987654
No 235
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.95 E-value=0.022 Score=51.62 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=23.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..+++.|+||+||||+|..+++.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999988764
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.94 E-value=0.03 Score=57.21 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ 302 (403)
...++|+|+|++||||||+++.|+..+. .+...+.+.|.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 3579999999999999999999976542 22344445554
No 237
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.90 E-value=0.021 Score=57.44 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ 302 (403)
..+.+|+++|+||+||||++.+|+..+.. +...+++.|.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 34789999999999999999999875431 2367777773
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.86 E-value=0.037 Score=52.92 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=31.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC-C--ccEEEeccHHHHHHhh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP-E--KRYILLGTNLILEQMK 308 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~-~--~~~v~ls~D~ir~~l~ 308 (403)
..-+++.|+||+|||++|..++..+. . ..++.++...+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 46788999999999999999886543 2 2355677676666653
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.82 E-value=0.029 Score=51.50 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 3589999999999999999999876542 3345553
No 240
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.80 E-value=0.032 Score=55.05 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..++++++|+|||||||+++.++.....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3579999999999999999999987653
No 241
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.69 E-value=0.046 Score=50.97 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=27.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~ 79 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIG 79 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEEC
Confidence 35789999999999999999998766544455554
No 242
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.68 E-value=0.048 Score=52.09 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
.-|+++|+||+||||+|+.+++.+.. .++.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~ 88 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA-NIKTTAA 88 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecc
Confidence 45789999999999999999988753 3555554
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.66 E-value=0.019 Score=50.26 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
++++.++|.+||||||+++.+...+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46889999999999999999987654
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.66 E-value=0.046 Score=53.24 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
...+|+++|.||+||||++.+++..+. .+...++..|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 467899999999999999999976542 2345666666
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.65 E-value=0.037 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...|+++|+|||||||+++.++..+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45688999999999999998887653
No 246
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.65 E-value=0.018 Score=53.27 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
-++++|+||+||||+|+.++.+... .++.++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~-~~~~v~~ 77 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHV-PFFSMGG 77 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTC-CCCCCCS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-CEEEech
Confidence 3789999999999999999987642 2444443
No 247
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.61 E-value=0.039 Score=51.91 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D 301 (403)
...++++|+||+||||+|+.++..+.. ..++.++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 357899999999999999999887632 235666543
No 248
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.61 E-value=0.036 Score=52.83 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
+.+|+++|.+|+||||++..++..+. .+...+++.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 78999999999999999998875543 2346777777
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.60 E-value=0.038 Score=48.67 Aligned_cols=24 Identities=29% Similarity=0.244 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..+++++|.|||||||.+.+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999666544
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.60 E-value=0.033 Score=53.35 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..+++.++|++||||||+++.++.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35789999999999999999998776
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.58 E-value=0.031 Score=50.89 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 357899999999999999999986554 23445553
No 252
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.56 E-value=0.034 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.+++.++|++||||||+.+.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 578899999999999999998754
No 253
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.55 E-value=0.081 Score=54.12 Aligned_cols=108 Identities=12% Similarity=-0.049 Sum_probs=63.8
Q ss_pred CCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH--HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN--LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (403)
Q Consensus 263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D--~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a 340 (403)
...+.+|++-|.-||||+|.++.+.+.+...++.++... .-.+. .+.| +.......
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~--------~~~y--------------l~R~~~~l 97 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL--------ERPP--------------QWRFWRRL 97 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH--------TSCT--------------THHHHHHC
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc--------cCCh--------------hhhHHHhC
Confidence 345799999999999999999999999987665554321 10000 0011 11233334
Q ss_pred hcCCCeEEEeCCCCCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 341 SRTPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 341 l~~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
-.+|..+|.|-...+. ....+.++.+..| + .+..++|+.+ ++.++|..+|..
T Consensus 98 P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~ 170 (500)
T 3czp_A 98 PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEK 170 (500)
T ss_dssp CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 5789999999764333 2222233333222 3 4556788886 899999999864
No 254
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.55 E-value=0.049 Score=49.93 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D 301 (403)
....+++++|.+|+||||++..++..+. .++..+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3468899999999999999999986543 2236677665
No 255
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.53 E-value=0.037 Score=51.01 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=26.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 7899999999999999999987654 23445553
No 256
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.51 E-value=0.046 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
....|+++|.+|+||||++.++...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999998764
No 257
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.50 E-value=0.029 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.7
Q ss_pred EEEEccCCCChhHHHHHHHHhCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~ 291 (403)
++++|.||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999876
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.46 E-value=0.036 Score=50.91 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++.-.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999987653
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.46 E-value=0.04 Score=49.77 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=25.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D 301 (403)
..+++++|.||+||||||.+++.+. ..+..++++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5799999999999999998875321 12235566654
No 260
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.41 E-value=0.039 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 347889999999999999998643
No 261
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.38 E-value=0.04 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-|+++|.+|+||||+.+++....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 262
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.33 E-value=0.053 Score=55.52 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
=|+|+|+||+||||+|+.++..... .++.++.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~-~~i~i~g 97 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARV-PFITASG 97 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeh
Confidence 3899999999999999999988753 4666654
No 263
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.33 E-value=0.042 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-|+++|.+|+||||+.+++....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37889999999999999998653
No 264
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.27 E-value=0.043 Score=47.99 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.-.|+++|.+||||||+.+.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45688999999999999999987643
No 265
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.25 E-value=0.043 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-|+++|.||+||||+..++....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.25 E-value=0.037 Score=51.85 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668 343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R 390 (403)
+.+.+|+|- +++.+..++.+++.+++.. ...++++.-+.+...+...|
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~ 217 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR 217 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence 788899997 7788888888888877642 46776666553333444444
No 267
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.063 Score=55.02 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
.+..++++|+||+||||+|+.+++++. ..++.++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeC
Confidence 357899999999999999999999885 23555543
No 268
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.18 E-value=0.071 Score=51.67 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh--CC------CccEEEeccHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD--HP------EKRYILLGTNL 302 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~--~~------~~~~v~ls~D~ 302 (403)
...+++++|.|||||||++..++.. .+ ....+.|+++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4689999999999999999999875 21 23466676643
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.15 E-value=0.038 Score=52.12 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=26.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~ 68 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFD 68 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEEC
Confidence 3588999999999999999999876542 3344443
No 270
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.14 E-value=0.046 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+|+||||+.+++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34788999999999999999864
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.10 E-value=0.049 Score=50.16 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++.-++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999999987554
No 272
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.10 E-value=0.042 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.+..++++|+||+||||+|+.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998766
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.10 E-value=0.044 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 358899999999999999999987654 2344444
No 274
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.04 E-value=0.049 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
=|+++|.+|+||||+.+++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37889999999999999998644
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.02 E-value=0.048 Score=50.51 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=26.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh--C-CCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD--H-PEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~--~-~~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.- . +..+-+.++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 3578999999999999999999874 2 233445553
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.02 E-value=0.046 Score=51.14 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=33.1
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R 390 (403)
+.+-+.+|+|- +++.+..|+.+++.+.+.. ...++++.-+.+...+...|
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~ 228 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 228 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE
Confidence 56778999998 7788888888887776542 45666665543333444444
No 277
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.99 E-value=0.05 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 347889999999999999998654
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.98 E-value=0.044 Score=50.99 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 357899999999999999999987654 23445443
No 279
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.97 E-value=0.069 Score=51.25 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--C------CccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--P------EKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~------~~~~v~ls~D~ 302 (403)
..+++++|.|||||||++..++... + ....+.++++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5799999999999999999998753 2 23466676653
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.97 E-value=0.044 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 357899999999999999999987654 23445443
No 281
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.96 E-value=0.041 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.-++|.|+||+|||++|+.+++.+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5588999999999999999998875
No 282
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=92.95 E-value=0.11 Score=49.22 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=67.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g 344 (403)
.+.+|++-|.-||||.+.++++.+.+...++.+++... + . . + ++....+.+.....-..|
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------P---t--~--e---E~~~~ylwR~~~~lP~~G 133 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------P---T--D--E---EKSHDFLWRIEKQVPAAG 133 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------C---C--H--H---HHTSCTTHHHHTTCCCTT
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC----------C---C--h--h---hhcCCHHHHHHHhCCCCC
Confidence 57899999999999999999999999876665553210 0 0 0 0 111111222343446789
Q ss_pred CeEEEeCCCCCHHHH------------HHHHH---HHhcC---CcEEE--EEECCh-HHHHHHHHHhcc
Q 015668 345 RNFIIDQTNVFKSAR------------KRKLR---LFVNF---RKIAV--VVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 345 ~~vIlD~Tn~~~~~R------------~~~~~---~~~~~---~~~~v--v~l~~p-e~~~~R~~~R~~ 392 (403)
+.+|+|-+...+-.. .+.++ .|... ..+.+ ++|..+ ++.++|..+|..
T Consensus 134 ~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 134 MVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp CEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 999999876544321 12222 33321 13333 688887 899999999864
No 283
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.95 E-value=0.037 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.-+++.|+||+|||++|+.++..++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35889999999999999999998764
No 284
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.94 E-value=0.051 Score=46.15 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4557889999999999999998654
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.94 E-value=0.045 Score=50.65 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3578999999999999999999876542 3445553
No 286
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.93 E-value=0.051 Score=47.60 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
--|+++|.+|+||||+.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999998753
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.92 E-value=0.046 Score=49.94 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++.-++
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 357899999999999999999987654
No 288
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.90 E-value=0.052 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
=|+++|.+|+||||+.+++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47889999999999999998543
No 289
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.89 E-value=0.052 Score=46.01 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457889999999999999998653
No 290
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.89 E-value=0.047 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.+..++++|+||+||||+++.++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999998765
No 291
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.88 E-value=0.062 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
....+|.++|.|||||||+.+.+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999864
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.87 E-value=0.057 Score=51.31 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=28.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
.+++++++|.+|+||||++..++..+. .+...+++.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 578999999999999999999876543 2346666665
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.87 E-value=0.055 Score=50.62 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..+++.++|++||||||+.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999875
No 294
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.84 E-value=0.053 Score=45.56 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45788999999999999999864
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.84 E-value=0.053 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.||+||||+.+++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 34789999999999999999754
No 296
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.053 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34788999999999999999864
No 297
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.83 E-value=0.039 Score=49.98 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC-CccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~ 300 (403)
.+++.++|++||||||+.+.++.-.+ ..+-+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 57888999999999999999987654 234555543
No 298
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.83 E-value=0.057 Score=45.14 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~ 289 (403)
=|+++|.+|+||||+.+++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788999999999999999864
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.82 E-value=0.067 Score=50.05 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.+++.++|++||||||+.+.++.-.|..+-+.++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~ 63 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFIN 63 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEEC
Confidence 5789999999999999999998765544455554
No 300
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.82 E-value=0.06 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
....++.++|.|||||||+.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999754
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.81 E-value=0.071 Score=47.58 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
....|+++|.+|+||||++.+++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35678888999999999999998764
No 302
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.79 E-value=0.058 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.||+||||+.+++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45788999999999999999754
No 303
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.79 E-value=0.053 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHhCC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~~ 291 (403)
++++|+||+||||+|+.++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999998753
No 304
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.79 E-value=0.054 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
..|+++|.||+||||+.+++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.055 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+..++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 306
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.73 E-value=0.056 Score=45.42 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~ 288 (403)
|+++|.||+||||+.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78899999999999999964
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.73 E-value=0.073 Score=57.56 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~ 306 (403)
+.=|+|.|+||+|||.+|+.++.+... .++.++..++..+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELLTM 550 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC-EEEECCHHHHHTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC-ceEEeccchhhcc
Confidence 566899999999999999999998863 4666766665543
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.72 E-value=0.054 Score=50.86 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=27.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 357899999999999999999987654 23445553
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.72 E-value=0.054 Score=50.44 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 75 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 357899999999999999999987654 23445553
No 310
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.71 E-value=0.055 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
+++.|+||+||||+|+.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998774
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.71 E-value=0.058 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.127 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..+++.++|.|||||||++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.69 E-value=0.068 Score=52.54 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+++++|++||||||+.+.++..++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 457999999999999999999987543
No 313
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.68 E-value=0.054 Score=45.36 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~ 288 (403)
|+++|.||+||||+.+++..
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 68899999999999999964
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.61 E-value=0.063 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999999863
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.60 E-value=0.068 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.292 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
.++++.|+||+||||+|.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999875
No 316
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.60 E-value=0.061 Score=45.52 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..--|+++|.+|+||||+.+++....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568889999999999999998654
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.58 E-value=0.4 Score=50.19 Aligned_cols=51 Identities=6% Similarity=0.018 Sum_probs=33.7
Q ss_pred HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R 390 (403)
.+.+-+.+|+|- +++....+..+++.+.+.. ...++++.-.-....+...|
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr 290 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 357788999995 7888888888777777653 45676776553233333333
No 318
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.56 E-value=0.058 Score=50.42 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~ 67 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 357899999999999999999987654 23344443
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.54 E-value=0.054 Score=50.21 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~ 59 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 59 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEEC
Confidence 35789999999999999999998765422445443
No 320
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.54 E-value=0.062 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..-|+++|.+|+||||+.+++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455788999999999999999865
No 321
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.53 E-value=0.054 Score=46.82 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.||+||||+.+++...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999863
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.53 E-value=0.083 Score=51.14 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
....+|.++|.||+||||+++.++..+. .....+++.|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 4578899999999999999999975431 1224455444
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.52 E-value=0.062 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||++.++....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457889999999999999998653
No 324
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.49 E-value=0.055 Score=51.06 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 357899999999999999999987654 2334444
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.48 E-value=0.061 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..-|+++|.+|+||||+.+++...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999753
No 326
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.47 E-value=0.062 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+..++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998764
No 327
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.44 E-value=0.059 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
.++++|.+||||||+.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999999998644
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.43 E-value=0.053 Score=53.03 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=63.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCCccc--CCC-hHHHHHHHHHHHHHHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRK--HNY-SERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~~~~--~~~-~~~~~~~~~~a~~~~~~ll~~al 341 (403)
.++++++|++||||||+.+.+....+. .+.+.+. ..+ ++......+. ..+ +....... ........+..++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie--~~~-e~~~~~~~~~v~~v~~q~~~~~~~--~~~t~~~~i~~~l 249 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE--DVP-ELFLPDHPNHVHLFYPSEAKEEEN--APVTAATLLRSCL 249 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE--SSS-CCCCTTCSSEEEEECC------------CCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC--Ccc-ccCccccCCEEEEeecCccccccc--cccCHHHHHHHHH
Confidence 478999999999999999999987763 3455553 111 1110000000 011 11000000 0111234555566
Q ss_pred cCCC-eEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhcccc--Cccccc
Q 015668 342 RTPR-NFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEQIM 400 (403)
Q Consensus 342 ~~g~-~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~~~~--g~~Vp~ 400 (403)
+..- ..|++..-. ..... +++.+..-+ .+....-.++....+|........ ++.+|.
T Consensus 250 ~~~pd~~l~~e~r~-~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~~~ 311 (361)
T 2gza_A 250 RMKPTRILLAELRG-GEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPY 311 (361)
T ss_dssp TSCCSEEEESCCCS-THHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGSCH
T ss_pred hcCCCEEEEcCchH-HHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCCCH
Confidence 5444 455555432 22222 455454433 344455555678888888776543 334443
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.40 E-value=0.068 Score=45.81 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 445788999999999999999864
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.39 E-value=0.067 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+..++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999754
No 331
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.39 E-value=0.065 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345788999999999999999864
No 332
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.37 E-value=0.066 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34788999999999999999875
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.37 E-value=0.067 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 347889999999999999998643
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.36 E-value=0.069 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+.+.++|.+||||||+++.++..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999999988765
No 335
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.36 E-value=0.073 Score=44.44 Aligned_cols=22 Identities=45% Similarity=0.527 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
|+++|.+|+||||+.+++....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999997543
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.36 E-value=0.061 Score=46.54 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456788999999999999999864
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.33 E-value=0.091 Score=56.95 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.+.-|+|+|+||+||||+|+.++..++. .++.++..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~~ 272 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA-FFFLINGP 272 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEch
Confidence 4577999999999999999999988763 35666543
No 338
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.32 E-value=0.067 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..-|+++|.+|+||||+.+++...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999864
No 339
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.31 E-value=0.06 Score=49.97 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++.-++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999987654
No 340
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.30 E-value=0.047 Score=48.02 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...|+++|.+||||||+.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999987543
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.30 E-value=0.069 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..=|+++|.+|+||||+.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 345788999999999999999864
No 342
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.30 E-value=0.077 Score=51.95 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
..++++.|+|||||||++..++.... ....+.|+.+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 58999999999999999999876532 2235566654
No 343
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.29 E-value=0.081 Score=45.32 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.||+||||+.+++....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999998653
No 344
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.071 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3457889999999999999998643
No 345
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.24 E-value=0.07 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 44778999999999999999865
No 346
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.18 E-value=0.072 Score=45.58 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345788999999999999999754
No 347
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.16 E-value=0.076 Score=53.22 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=29.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D 301 (403)
.+.+|+++|++||||||++..++..+.. +...+++.|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 5789999999999999999998865432 346677766
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.12 E-value=0.075 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45778899999999999999854
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.12 E-value=0.073 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|+++|.+|+||||+.+++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 688999999999999999864
No 350
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.10 E-value=0.074 Score=46.02 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4557889999999999999998643
No 351
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.07 E-value=0.071 Score=45.16 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345788999999999999999753
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.05 E-value=0.06 Score=50.88 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=26.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~ 300 (403)
...++++|.||+||||+|+.+++.... .++.++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~~ 71 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV-NLRVTSG 71 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC-CEEEECT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC-CEEEEec
Confidence 356889999999999999999887652 3555543
No 353
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=92.04 E-value=0.17 Score=51.74 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH--HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN--LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D--~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al 341 (403)
..+.+|++-|.-||||+|.++.+.+.+...++.++... .-.+. .+.| +.+.....-
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~--------~~~y--------------l~R~~~~lP 355 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER--------AQPY--------------LWRFWRHIP 355 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH--------TSCT--------------THHHHTTCC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh--------cchH--------------HHHHHHhCC
Confidence 35899999999999999999999999886655444221 10000 0011 112333345
Q ss_pred cCCCeEEEeCCCCCHH------------HHHHHHHH---Hh----cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668 342 RTPRNFIIDQTNVFKS------------ARKRKLRL---FV----NFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (403)
Q Consensus 342 ~~g~~vIlD~Tn~~~~------------~R~~~~~~---~~----~~~-~~~vv~l~~p-e~~~~R~~~R~~ 392 (403)
.+|..+|.|-+...+- ...+.++. |. +.+ .+..++|+.+ ++.++|..+|..
T Consensus 356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 7899999998655432 22222333 32 223 4555788886 899999999965
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.02 E-value=0.062 Score=51.57 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
++++|+||+||||+++.++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999885
No 355
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.02 E-value=0.076 Score=51.76 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=26.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
..++++.|.|||||||++..++.... ....+.++.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 57899999999999999998875421 2235666654
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.02 E-value=0.071 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
--|+++|.+|+||||+.+++....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 457789999999999999998653
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.01 E-value=0.078 Score=45.30 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345788999999999999999864
No 358
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.97 E-value=0.08 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+|+||||+.+++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 34788999999999999999854
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.95 E-value=0.085 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
+.+++|.+||||||+.+.+.--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999986543
No 360
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.93 E-value=0.096 Score=45.29 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..--|+++|.+|+||||+.+++....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34557889999999999999998643
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.92 E-value=0.08 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 445788999999999999999754
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.91 E-value=0.061 Score=51.96 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL 298 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l 298 (403)
.++++++|.+||||||+.+.+....+. .+.+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 468999999999999999999987653 344555
No 363
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.91 E-value=0.18 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-++++|.||+||||+|+.++..+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998765
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.89 E-value=0.088 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++++|++||||||+.+.++..++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45999999999999999998876543
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.83 E-value=0.075 Score=52.83 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~ 287 (403)
.+++.++|.|||||||++..++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 5799999999999999999875
No 366
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.82 E-value=0.083 Score=45.03 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
..-|+++|.+|+||||+.+++..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34578999999999999999984
No 367
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.80 E-value=0.093 Score=49.82 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=27.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.+.++++.|+||+||||+|+.+++.+.. .++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~-~~~~i~ 80 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNA-DMMFVN 80 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTE-EEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCC-CEEEEc
Confidence 3568889999999999999999998852 345554
No 368
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.75 E-value=0.086 Score=45.37 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568889999999999999998653
No 369
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.71 E-value=0.084 Score=52.80 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
...+++++|++||||||+.+.+...++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 357999999999999999999987654
No 370
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.69 E-value=0.089 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567889999999999999998653
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.66 E-value=0.089 Score=45.60 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457789999999999999988653
No 372
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.62 E-value=0.14 Score=48.49 Aligned_cols=32 Identities=19% Similarity=0.518 Sum_probs=26.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D 301 (403)
.+++++|++|+||||+++++.+..+ ++.++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP---GILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS---EEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC---cEEEEee
Confidence 6899999999999999999998874 6666543
No 373
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.61 E-value=0.091 Score=45.35 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
...-|+++|.+|+||||+.+++...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456888999999999999999754
No 374
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.60 E-value=0.1 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..+++++|.|||||||+|.+++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999999999864
No 375
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.60 E-value=0.097 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+++||||+.+++....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 447889999999999999998765
No 376
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.60 E-value=0.092 Score=45.32 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4458899999999999999998644
No 377
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.58 E-value=0.092 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
+..++++|+||+||||+|+.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.57 E-value=0.11 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
-=|+++|.||+||||+.+.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4478899999999999987765543
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.096 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+++||||+.+++...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45788999999999999999864
No 380
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.54 E-value=0.093 Score=45.80 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+.+++....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4567889999999999999998653
No 381
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.092 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457889999999999999998654
No 382
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.51 E-value=0.094 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
++++|+||+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8899999999999999998874
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.48 E-value=0.099 Score=51.21 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=32.8
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.+-+.+|+|- +++.+..|..+++.+.+. ..+.++++.-+ +++ .+...|
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea-~~~aDr 208 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA-LQYADR 208 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHHCSE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHCCE
Confidence 56788999997 788888888776655543 25677777665 443 344444
No 384
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.096 Score=45.56 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+|+||||+.+++...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45788999999999999999865
No 385
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.46 E-value=0.095 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4557889999999999999998654
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.44 E-value=0.095 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999998643
No 387
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.41 E-value=0.11 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998643
No 388
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.41 E-value=0.1 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~ 289 (403)
-|+++|.||+||||+.+++...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999863
No 389
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.41 E-value=0.1 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+++....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347789999999999999998653
No 390
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.39 E-value=0.12 Score=44.72 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-=|+++|.+|+||||+.+++....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34567899999999999999998643
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.38 E-value=0.073 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
.--|+++|.+|+||||+..++..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45678899999999999999974
No 392
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.36 E-value=0.083 Score=45.35 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567889999999999999998543
No 393
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.31 E-value=0.1 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999854
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.30 E-value=0.078 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+|+||||+.+++...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34788999999999999999865
No 395
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.26 E-value=0.1 Score=45.13 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457889999999999999998643
No 396
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.24 E-value=0.11 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..|++.|+||+|||++|..++....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4689999999999999999998753
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.24 E-value=0.1 Score=49.58 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
..+++.++|++||||||+.+.++.-++
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 357999999999999999999987654
No 398
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.21 E-value=0.11 Score=51.02 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~ 88 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 88 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 358999999999999999999987554 23445553
No 399
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.20 E-value=0.071 Score=51.04 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.1
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 114 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence 3588999999999999999999876542 3445553
No 400
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.20 E-value=0.08 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.=|+|+|+||+|||++|+.++....
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3578999999999999999998774
No 401
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.18 E-value=0.11 Score=45.48 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..--|+++|.+|+||||+.+++....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 35668889999999999999998654
No 402
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.17 E-value=0.1 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+..++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345788999999999999999754
No 403
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.15 E-value=0.1 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998653
No 404
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.13 E-value=0.11 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567889999999999999998653
No 405
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.09 E-value=0.11 Score=50.81 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEecc
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT 300 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~ 300 (403)
..++++.|.||+||||+|..++... .....+.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5789999999999999999887542 1224677776
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.07 E-value=0.11 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 445788999999999999999875
No 407
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.06 E-value=0.13 Score=46.81 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEe
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILL 298 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~l 298 (403)
..+++++|.|||||||.+.+++..+. ....+++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 57999999999999999887766543 2234555
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.02 E-value=0.1 Score=53.51 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCChhHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKW 286 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l 286 (403)
..++++++|.|||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999999994
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.12 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 445788999999999999999854
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.01 E-value=0.13 Score=44.48 Aligned_cols=26 Identities=35% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
....-|+++|.+|+||||+.+++...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999754
No 411
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.076 Score=51.16 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.+..+++.|+||+|||+.++.+++++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998876
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.96 E-value=0.09 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~ 287 (403)
.--|+++|.||+||||+.+++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999995
No 413
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.95 E-value=0.12 Score=51.04 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=34.5
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.+-+.+|+|- +++....|..+++.+++.. .+.++++.-+ +++ .+...|
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~~aDr 203 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADK 203 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-HHHCSE
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-HHhCCE
Confidence 56888999998 8888888888877777642 4677777665 443 344444
No 414
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.91 E-value=0.1 Score=45.79 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~ 288 (403)
-|+++|.||+||||+.+++..
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999974
No 415
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.89 E-value=0.12 Score=49.07 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+++.++|.+||||||+.+.+. .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4688999999999999999999 654
No 416
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.87 E-value=0.12 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+..++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999854
No 417
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.87 E-value=0.12 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4557889999999999999997643
No 418
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.84 E-value=0.14 Score=50.35 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D 301 (403)
..++++.|.||+||||+|..++.... ....+.++++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46888899999999999998875431 2246777765
No 419
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.84 E-value=0.12 Score=50.48 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=26.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 357899999999999999999986554 23445553
No 420
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.80 E-value=0.12 Score=46.92 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+.+.+....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4568899999999999999998654
No 421
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.80 E-value=0.12 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
++++|+||+||||+|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 422
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.76 E-value=0.12 Score=50.57 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=33.3
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.+-+.+|+|- +++....|+.+++.+++.. ...++++.-+ +++ .+...|
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 215 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADR 215 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence 56788999998 7788888888877776642 4566666555 443 344444
No 423
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.74 E-value=0.077 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=9.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345788999999999999998754
No 424
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.72 E-value=0.12 Score=45.44 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+..++....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457889999999999999998643
No 425
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.13 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.=|+++|.+|+||||+..++....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 457889999999999999998643
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.70 E-value=0.12 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455788999999999999999743
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.69 E-value=0.12 Score=45.20 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-=|+++|.+|+||||+.+++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 445788999999999999999743
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.65 E-value=0.12 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457889999999999999998643
No 429
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.64 E-value=0.13 Score=50.34 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 358899999999999999999987554 23445553
No 430
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.58 E-value=0.12 Score=50.57 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+++.++|.||+||||+.+.|.....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 46889999999999999999987553
No 431
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.54 E-value=0.14 Score=50.68 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~ 80 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID 80 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEES
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEEC
Confidence 46899999999999999999998655433345554
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.53 E-value=0.12 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+|+||||+.+++...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 44778999999999999999754
No 433
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.53 E-value=0.13 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+..++...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456788999999999999999854
No 434
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.52 E-value=0.3 Score=52.35 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir 304 (403)
.++++|+||+|||++|+.+++.+. ...++.++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 689999999999999999998752 2347777655443
No 435
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.51 E-value=0.28 Score=43.47 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~l 298 (403)
...+++.+|.+||||||.+-+++... ......++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35799999999999999988877654 23335555
No 436
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.51 E-value=0.13 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
-++++|+||+|||++|+.++..+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35889999999999999999875
No 437
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.48 E-value=0.12 Score=47.45 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
...-|+|+|.||+||||+...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999998654
No 438
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.14 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346788999999999999999865
No 439
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.43 E-value=0.12 Score=53.14 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL 298 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l 298 (403)
...++++|++||||||+.+.+....+. .+.+.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 456899999999999999999987764 234443
No 440
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.40 E-value=0.13 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred ceE--EEEEccCCCChhHHHHHHHHh
Q 015668 266 CEV--MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~v--ill~GlPGSGKST~A~~l~~~ 289 (403)
.++ ++++|.+||||||+.+.++..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 466 899999999999999999754
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.37 E-value=0.13 Score=44.79 Aligned_cols=23 Identities=43% Similarity=0.440 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+.+++...
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999743
No 442
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.36 E-value=0.15 Score=48.51 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls 299 (403)
.-|+++|.||+|||++|+.++...+. ..++.++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 45788999999999999999986542 2356665
No 443
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.34 E-value=0.14 Score=44.81 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.=|+++|.+|+||||+.+++....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 347889999999999999998643
No 444
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.33 E-value=0.15 Score=50.23 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=32.8
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.+-+.+++|- +++.+..|+.+++.+++.. ...++++.-+ +++ .+...|
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 211 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDR 211 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCE
Confidence 57788999998 7888888988887777642 3556555444 443 334444
No 445
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.26 E-value=0.49 Score=54.06 Aligned_cols=110 Identities=11% Similarity=0.191 Sum_probs=59.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEecc--------HHHHHHhhc--------CCCcccC-CCh---HHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLILEQMKV--------PGLLRKH-NYS---ERFQC 324 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~--------D~ir~~l~~--------~g~~~~~-~~~---~~~~~ 324 (403)
.+.+.++|..||||||+++.+...+.. .+-+.++. +.+|+.+.. .|..+++ .++ ...++
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~ 523 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREE 523 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHH
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHH
Confidence 578999999999999999999987753 34455532 345555431 0111100 000 11133
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcC-CcEEEEEE
Q 015668 325 LMGRANAI-FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF-RKIAVVVF 377 (403)
Q Consensus 325 ~~~~a~~~-~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (403)
+.+.++.+ +.+.++ .+.+|...++-. .+++--+|+| +..++.. .+-.++.+
T Consensus 524 v~~a~~~a~l~~~i~-~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl~~~~~IliL 578 (1321)
T 4f4c_A 524 MVAACKMANAEKFIK-TLPNGYNTLVGDRGTQLSGGQKQR-IAIARALVRNPKILLL 578 (1321)
T ss_dssp HHHHHHHTTCHHHHH-HSTTTTSSEESSSSCCCCHHHHHH-HHHHHHHTTCCSEEEE
T ss_pred HHHHHHHccchhHHH-cCCCCCccEecCCCCCCCHHHHHH-HHHHHHHccCCCEEEE
Confidence 33333221 223332 245666555533 7888888876 6666653 33334444
No 446
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.23 E-value=0.14 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
--|+++|.+|+||||+.+++....
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999998643
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.21 E-value=0.14 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=23.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
..++++|+||+||||+|+.++..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 57899999999999999999988763
No 448
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.21 E-value=0.13 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
..=|++.|.+||||||+++++.-
T Consensus 33 ~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHHH
Confidence 45578899999999999999853
No 449
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.19 E-value=0.15 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+|+|.||+||||+..++...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999853
No 450
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.18 E-value=0.14 Score=50.33 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=32.5
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R 390 (403)
+.+-+.+++|- +++.+..|+.+++.+++.. ...++++.-+ +++ .+...|
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 209 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDR 209 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence 57788999998 7888888888877776542 3555555444 443 334444
No 451
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.16 E-value=0.14 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.+|+||||+.+++...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345788999999999999999753
No 452
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.15 E-value=0.13 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
..-|+++|.+|+||||+..++...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999764
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.99 E-value=0.14 Score=48.66 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
.+++.++|++||||||+.+.+.....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 46889999999999999999986543
No 454
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.89 E-value=0.13 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.--|+++|.+|+||||+.+++....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557899999999999999997554
No 455
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.85 E-value=0.12 Score=50.45 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 357899999999999999999986554 33455554
No 456
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.82 E-value=0.17 Score=49.36 Aligned_cols=26 Identities=35% Similarity=0.250 Sum_probs=22.4
Q ss_pred CceEEEE--EccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMM--VGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill--~GlPGSGKST~A~~l~~~~ 290 (403)
.+..+++ +|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3567888 9999999999999998765
No 457
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.77 E-value=0.13 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..++++++|++||||||+.+.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999998654
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.73 E-value=0.16 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.||+||||+..++....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568889999999999999998543
No 459
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.63 E-value=0.54 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
...|+++|.||+||||+.+++...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999753
No 460
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.61 E-value=0.17 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
-=|+++|.+++||||+.+++...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 44778999999999999999865
No 461
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.58 E-value=0.16 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-|+++|.||+||||+.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 462
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.56 E-value=0.19 Score=47.63 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.+..|.++|.||+||||+.+++...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567999999999999999999864
No 463
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.56 E-value=0.27 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~ 289 (403)
.|+++|.|++||||+.+++...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999754
No 464
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.55 E-value=0.17 Score=48.55 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=25.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
..-|+++|.+|+||||+|..+.+.- +..++-|.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~G----~~lv~DD~ 179 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDDA 179 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CEEEeCCE
Confidence 4679999999999999999997642 45555553
No 465
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.46 E-value=0.19 Score=47.52 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=25.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls 299 (403)
.++++.|++|+||||+++++.+..... ++.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEE
Confidence 489999999999999999998876432 45554
No 466
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=89.34 E-value=0.62 Score=44.15 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
.+.|+|+|+ ||+|+.++|.+++|+
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~ 123 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISEYPD 123 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTT
T ss_pred CCeEEEeCC---CHHHHHHHHHHhChh
Confidence 467888887 599999999999885
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.33 E-value=0.14 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
.--|+++|.+++||||+..++..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34588899999999999999964
No 468
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.19 Score=44.79 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.-=|+++|.+|+||||+.+++....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457889999999999999998643
No 469
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.15 E-value=0.18 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHhC
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~ 290 (403)
-=|+++|.+|+||||+.+.+....
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 447789999999999999877643
No 470
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.14 E-value=0.18 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.8
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~ 288 (403)
--|+++|.+|+||||+...|..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3478999999999999999753
No 471
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.14 E-value=0.19 Score=48.21 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~ 291 (403)
-+..+++.|+||+||||+|+.+++.+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 356899999999999999999998764
No 472
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.08 E-value=0.12 Score=50.58 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=25.9
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l 298 (403)
..+++.++|++||||||+.+.++--.+ ..+-+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 357899999999999999999986544 2334444
No 473
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.03 E-value=0.18 Score=47.92 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.9
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 015668 269 MMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~ 288 (403)
|+++|.+|+||||+.+.+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48899999999999999764
No 474
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.02 E-value=0.2 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~ 288 (403)
...+|.++|++|.||||+|.+++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 468999999999999999998853
No 475
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.90 E-value=0.27 Score=41.54 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~ 288 (403)
+.+.+++|+.||||||+...+.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999888753
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.79 E-value=0.24 Score=51.11 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.1
Q ss_pred HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 015668 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP 380 (403)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p 380 (403)
.+.+-+.+|+|- +++....+..+++.+.++. ...++++.-.
T Consensus 153 L~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHd 196 (538)
T 3ozx_A 153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 357888999996 7888888888777776653 4666666554
No 477
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.77 E-value=0.27 Score=47.13 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ 302 (403)
..-|+++|.+|+||||+|..+...- +..++-|.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g----~~lv~dD~ 176 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG----HRLVADDN 176 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT----CEEEESSE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC----CceecCCe
Confidence 4789999999999999999998753 34454443
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.74 E-value=0.2 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhC
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..++++++|.|||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999987543
No 479
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.55 E-value=0.1 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=4.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
--|+++|.+|+||||+..++...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45788999999999999999765
No 480
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.23 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.6
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~ 288 (403)
-=|+|+|.||+||||+..++..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4488999999999999999974
No 481
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.51 E-value=0.29 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~ 288 (403)
...+|.++|++|.||||+|+++++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999985
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.48 E-value=0.094 Score=50.24 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
.++++++|.||+||||+.+.+....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4689999999999999999997544
No 483
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.45 E-value=0.26 Score=49.19 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..++.++|.+||||||+.+.+..-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4489999999999999999998743
No 484
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.44 E-value=0.27 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHHh
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.+-.|+++|.|++||||+.+++...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999864
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.26 E-value=0.22 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHhC
Q 015668 269 MMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~~ 290 (403)
++++|+||+|||++|+.+++.+
T Consensus 204 vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.24 E-value=0.24 Score=51.12 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.7
Q ss_pred HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (403)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p 380 (403)
.+.+-+.+|+|- +++....++.+++.++++. ...++++.-+
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357888999996 7888888888777776542 4666666554
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.05 E-value=0.14 Score=45.40 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.0
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWV 287 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~ 287 (403)
-=|+++|.+|+||||+.+++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999944
No 488
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.03 E-value=0.28 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCChhHHHHHHHH
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~ 288 (403)
....+.++|+||+||||+.+.+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999987
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.01 E-value=0.25 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHh
Q 015668 268 VMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~ 289 (403)
-|+++|.|++||||+.+++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999765
No 490
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.82 E-value=0.14 Score=53.40 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.2
Q ss_pred EEEEEccCCCChhHHHHHHHHhCCC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~~~ 292 (403)
=|+|+|.||+|||++|+.+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC
Confidence 4789999999999999999988763
No 491
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.82 E-value=0.28 Score=52.44 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=28.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i 303 (403)
--++++|+||+|||++|+.+++.+. ..++.++...+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~ 524 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEY 524 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhh
Confidence 3689999999999999999998874 34666755443
No 492
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.82 E-value=0.12 Score=45.87 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHhC
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~~ 290 (403)
..-|+++|.+|+||||+..++....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4557789999999999999998653
No 493
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.74 E-value=0.26 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHh
Q 015668 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 266 ~~vill~GlPGSGKST~A~~l~~~ 289 (403)
.--|+++|.|++||||+..++...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 345889999999999999999864
No 494
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.69 E-value=0.26 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHh
Q 015668 267 EVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 267 ~vill~GlPGSGKST~A~~l~~~ 289 (403)
.-|+|+|.||+||||+.+++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 495
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.66 E-value=0.56 Score=47.14 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCChhHHHHHHHHh
Q 015668 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 264 ~~~~vill~GlPGSGKST~A~~l~~~ 289 (403)
....+.++.|.|||||||+..+++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 45799999999999999999988753
No 496
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.54 E-value=0.32 Score=46.93 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccH
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTN 301 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D 301 (403)
++++.|.||+||||++-+++... +....+.|++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 68999999999999987775433 12345667654
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.44 E-value=0.25 Score=51.01 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=34.4
Q ss_pred hcCCCeEEEeC--CCCCHHHHHHHHHHHhcC---CcEEEEEECChHHHHHHHHHh
Q 015668 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKPEDLKIRSVKR 390 (403)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~pe~~~~R~~~R 390 (403)
+.+-+.+|+|- +++....|..+++.+.+. ....++++..+-....+...|
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr 455 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 57888999998 778888888877777654 246666666653344555555
No 498
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=87.44 E-value=0.29 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHHHHHHh
Q 015668 269 MMMVGLPASGKTTWAEKWVKD 289 (403)
Q Consensus 269 ill~GlPGSGKST~A~~l~~~ 289 (403)
|.++|+||+||||+.+.+...
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999998764
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.36 E-value=0.29 Score=50.89 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.3
Q ss_pred CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (403)
Q Consensus 265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls 299 (403)
..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 403 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC
Confidence 357899999999999999999987664 23445553
No 500
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.21 E-value=0.26 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHHhC
Q 015668 268 VMMMVGLPASGKTTWAEKWVKDH 290 (403)
Q Consensus 268 vill~GlPGSGKST~A~~l~~~~ 290 (403)
.+++.|.||+||||++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999998887654
Done!