Your job contains 1 sequence.
>015670
MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLR
PGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQS
PSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGT
QSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKT
GDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP
MGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSV
SISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015670
(403 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 639 5.9e-101 2
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 649 1.4e-99 2
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 608 4.8e-93 2
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 362 9.9e-64 2
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 331 4.8e-60 2
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 266 1.1e-49 3
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 266 4.5e-44 2
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 247 4.9e-42 2
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 255 7.0e-22 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 87 4.6e-06 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 129 8.8e-06 1
MGI|MGI:99180 - symbol:Zfp36 "zinc finger protein 36" spe... 91 1.1e-05 2
RGD|620722 - symbol:Zfp36 "zinc finger protein 36" specie... 91 3.6e-05 2
UNIPROTKB|P47973 - symbol:Zfp36 "Tristetraprolin" species... 91 3.6e-05 2
UNIPROTKB|D0VE66 - symbol:LOC100623625 "Tristetraprolin" ... 90 0.00010 2
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 82 0.00018 2
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 79 0.00019 3
UNIPROTKB|E2RKS9 - symbol:ZFP36 "Uncharacterized protein"... 80 0.00026 2
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 79 0.00030 3
UNIPROTKB|P26651 - symbol:ZFP36 "Tristetraprolin" species... 94 0.00058 2
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 76 0.00064 3
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 76 0.00064 3
UNIPROTKB|Q0VCR3 - symbol:ZFP36 "Tristetraprolin" species... 90 0.00065 2
UNIPROTKB|Q6GLD9 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 82 0.00068 3
UNIPROTKB|G3MWV8 - symbol:ZFP36 "Tristetraprolin" species... 90 0.00082 2
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 639 (230.0 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 133/232 (57%), Positives = 153/232 (65%)
Query: 118 LQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG--PVLVSPSMFSLQGWSPYATSLNPIXX 175
LQS +VPS+QQYGVV+ARP LL GSYVQ PYG +++ P M GW+PY S++ +
Sbjct: 197 LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPS 256
Query: 176 XXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQ 235
+YGIT LS SAPAY KE FP+RP Q ECQ
Sbjct: 257 PGTQPSMGTSS--VYGITPLSPSAPAYQS-------GPSSTGVSNKEQTFPQRPEQPECQ 307
Query: 236 YYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPAC 295
Y+M+TGDCKFG+SCRFHHP E P+ TLS GLPLRPGA PCTH+ Q G+CKFGPAC
Sbjct: 308 YFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPAC 366
Query: 296 KFDHPMGM--LSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIS 345
KFDH +G LSYSPS SSL DMPVAPYP SS+GTLAPSS SSD ELIS
Sbjct: 367 KFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLAPSS-SSDQCTELIS 415
Score = 382 (139.5 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 64/87 (73%), Positives = 76/87 (87%)
Query: 1 MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG--SVSNVSLNYYGYP 58
+G R GEFPER+GQPVCQ++MRTGTCK+GASCKYHHPRQG G SV+ VSLNY G+P
Sbjct: 84 LGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFP 143
Query: 59 LRPGEKECSYYMKTRQCKFGATCKFHH 85
LRPGEKECSY+M+T QCKFG+TC++HH
Sbjct: 144 LRPGEKECSYFMRTGQCKFGSTCRYHH 170
Score = 250 (93.1 bits), Expect = 9.0e-21, P = 9.0e-21
Identities = 50/130 (38%), Positives = 73/130 (56%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRE-----LIVPKMDVTLSPFGLPLRPGAAP 279
FPER GQ CQ++M+TG CKFG+SC++HHPR+ + P V+L+ G PLRPG
Sbjct: 94 FPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTP---VSLNYMGFPLRPGEKE 150
Query: 280 CTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDL 339
C+++++ G CKFG C++ HP+ +PS + P S PSS +
Sbjct: 151 CSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSSQQYGV 210
Query: 340 ---RPELISG 346
RP+L+ G
Sbjct: 211 VLARPQLLPG 220
Score = 226 (84.6 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 7 GGGE-FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKE 65
GGGE FPER +P C YY+RTG C YG+ C+++HPR A + + +P R G+
Sbjct: 43 GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPV 102
Query: 66 CSYYMKTRQCKFGATCKFHH 85
C ++M+T CKFGA+CK+HH
Sbjct: 103 CQHFMRTGTCKFGASCKYHH 122
Score = 226 (84.6 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 70
FP+R QP CQY+MRTG CK+G SC++HHP + A ++ +L++ G PLRPG C+++
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFA 355
Query: 71 KTRQCKFGATCKFHH 85
+ CKFG CKF H
Sbjct: 356 QHGICKFGPACKFDH 370
Score = 205 (77.2 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 40/100 (40%), Positives = 57/100 (57%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFG-LPLRPGAAPCTHY 283
FPERP + +C YY++TG C +GS CRF+HPR P + + G P R G C H+
Sbjct: 48 FPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNR-APVLGGLRTEAGEFPERMGQPVCQHF 106
Query: 284 VQRGVCKFGPACKFDHPM---GMLSYSPSASSLADMPVAP 320
++ G CKFG +CK+ HP G S +P + + P+ P
Sbjct: 107 MRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRP 146
Score = 123 (48.4 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHP 40
FP R G+ C Y+MRTG CK+G++C+YHHP
Sbjct: 142 FPLRPGEKECSYFMRTGQCKFGSTCRYHHP 171
Score = 119 (46.9 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 42 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 85
Q S + VS +P RP + EC Y+M+T CKFG +C+FHH
Sbjct: 282 QSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHH 325
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 649 (233.5 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 128/232 (55%), Positives = 154/232 (66%)
Query: 118 LQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLV-SPSMFSLQGWSPYATSLNPIXXX 176
LQS S+PS+QQYG+V+ RP L GSY+Q PYGP +V P M GW+PY SL+ +
Sbjct: 204 LQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSP 263
Query: 177 XXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQY 236
IYG+T LS SA AYTGTYQ KE FP+RP Q ECQY
Sbjct: 264 GTQPSIGSSS--IYGLTPLSPSATAYTGTYQSVPSSNSTS----KE--FPQRPDQPECQY 315
Query: 237 YMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK 296
+M+TGDCKFGSSCR+HHP + + PK + LS GLPLRPG A CTH+ Q G+CKFGPACK
Sbjct: 316 FMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACK 375
Query: 297 FDHPMGM-LSYSPSASSLADMPVAPYPVGSSI--GTLAPSSASSDLRPELIS 345
FDH M LSYSPSASSL DMPVAPYP+GSS G+ AP S+S++ E ++
Sbjct: 376 FDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEAVT 427
Score = 359 (131.4 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 1 MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG--SVSNVSLNYYGYP 58
+G R G PER+G PVCQ++MRTGTCK+GASCKYHHPRQG G SV+ VSL+Y GYP
Sbjct: 87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146
Query: 59 LRPGEKECSYYMKTRQCKFGATCKFHH 85
LRPGEKECSYY++T QCKFG TC+F+H
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNH 173
Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 54/134 (40%), Positives = 74/134 (55%)
Query: 226 PERPGQQECQYYMKTGDCKFGSSCRFHHPRE-----LIVPKMDVTLSPFGLPLRPGAAPC 280
PER G CQ++M+TG CKFG+SC++HHPR+ + P V+LS G PLRPG C
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAP---VSLSYLGYPLRPGEKEC 154
Query: 281 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSI-GTLA----PSSA 335
++Y++ G CKFG C+F+HP+ + P P P P +I TL PSS
Sbjct: 155 SYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQP-QPQPQLQTIYPTLQSQSIPSSQ 213
Query: 336 SSDL---RPELISG 346
L RP ++G
Sbjct: 214 QYGLVLTRPSFLTG 227
Score = 234 (87.4 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 69
EFP+R QP CQY+MRTG CK+G+SC+YHHP + + L+ G PLRPG +C+++
Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362
Query: 70 MKTRQCKFGATCKFHH 85
+ CKFG CKF H
Sbjct: 363 AQHGICKFGPACKFDH 378
Score = 223 (83.6 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 2 GAARAGGGE-FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLR 60
G GGGE +PER +P C YY+RTG C YG+ C+++HPR + V P R
Sbjct: 41 GGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPER 100
Query: 61 PGEKECSYYMKTRQCKFGATCKFHH 85
G C ++M+T CKFGA+CK+HH
Sbjct: 101 MGHPVCQHFMRTGTCKFGASCKYHH 125
Score = 205 (77.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 40/99 (40%), Positives = 56/99 (56%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 284
+PERP + +C YY++TG C +GS CRF+HPR+ V LP R G C H++
Sbjct: 51 YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFM 110
Query: 285 QRGVCKFGPACKFDHPM---GMLSYSPSASSLADMPVAP 320
+ G CKFG +CK+ HP G S +P + S P+ P
Sbjct: 111 RTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRP 149
Score = 135 (52.6 bits), Expect = 8.2e-30, Sum P(2) = 8.2e-30
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIV 259
+P RPG++EC YY++TG CKFG +CRF+HP L V
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAV 179
Score = 108 (43.1 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHP 40
+P R G+ C YY+RTG CK+G +C+++HP
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHP 174
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 608 (219.1 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
Identities = 119/228 (52%), Positives = 149/228 (65%)
Query: 121 PSVPSAQ--QYG-----VVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI 173
PSV S QYG + VAR LL GSY+QG YGP+L++P + + GWSPY+ ++P
Sbjct: 181 PSVQSLMPDQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSP- 238
Query: 174 XXXXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQE 233
+YG+TQL+++ P+ G Y QKE FPERPG+ E
Sbjct: 239 -ALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVI---QKEQAFPERPGEPE 294
Query: 234 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGP 293
CQYY+KTGDCKFG+SC+FHHPR+ + P+ + LSP GLPLRPG CT YVQ G CKFG
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGS 354
Query: 294 ACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLA--PSSASSDL 339
CKFDHPMG + Y+PSASSLAD PVAPYPV S +G LA PSS+S++L
Sbjct: 355 TCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSSTEL 402
Score = 338 (124.0 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
Identities = 52/77 (67%), Positives = 66/77 (85%)
Query: 9 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 68
G++PER G+P CQ+Y++TGTCK+GASCK+HHP+ GS+S+V LN YGYP+R G+ ECSY
Sbjct: 85 GQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSY 144
Query: 69 YMKTRQCKFGATCKFHH 85
Y+KT QCKFG TCKFHH
Sbjct: 145 YLKTGQCKFGITCKFHH 161
Score = 254 (94.5 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 70
FPER G+P CQYY++TG CK+G SCK+HHPR +N L+ G PLRPG + C++Y+
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 71 KTRQCKFGATCKFHH 85
+ CKFG+TCKF H
Sbjct: 346 QNGFCKFGSTCKFDH 360
Score = 237 (88.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 51/122 (41%), Positives = 71/122 (58%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 284
+PER G+ CQ+Y+KTG CKFG+SC+FHHP+ V L+ +G P+R G C++Y+
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYL 146
Query: 285 QRGVCKFGPACKFDHPMGMLSYSPSASSLADMPV-AP--YPVGSSIGTLAPSS---ASSD 338
+ G CKFG CKF HP P+ +++ P AP YP S+ +L P SS
Sbjct: 147 KTGQCKFGITCKFHHPQ------PAGTTVPPPPASAPQFYP---SVQSLMPDQYGGPSSS 197
Query: 339 LR 340
LR
Sbjct: 198 LR 199
Score = 235 (87.8 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 42/79 (53%), Positives = 49/79 (62%)
Query: 7 GGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKEC 66
G +PER G P C YYMRTG C YG C+Y+HPR A + V YP R GE C
Sbjct: 38 GSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATGQ-YPERFGEPPC 96
Query: 67 SYYMKTRQCKFGATCKFHH 85
+Y+KT CKFGA+CKFHH
Sbjct: 97 QFYLKTGTCKFGASCKFHH 115
Score = 215 (80.7 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 44/117 (37%), Positives = 61/117 (52%)
Query: 196 SASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 255
SA AP +T +PERPG +C YYM+TG C +G+ CR++HPR
Sbjct: 13 SAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Query: 256 ELIVPKMDVTLSPFG-LPLRPGAAPCTHYVQRGVCKFGPACKFDHPM---GMLSYSP 308
+ ++ T+ G P R G PC Y++ G CKFG +CKF HP G +S+ P
Sbjct: 73 DRA--SVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVP 127
Score = 118 (46.6 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGS 46
+P R G C YY++TG CK+G +CK+HHP Q AG+
Sbjct: 133 YPVREGDNECSYYLKTGQCKFGITCKFHHP-QPAGT 167
Score = 99 (39.9 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 46 SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 85
S+ + L YP RPG +C+YYM+T C +G C+++H
Sbjct: 31 SMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNH 70
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 362 (132.5 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 73/192 (38%), Positives = 100/192 (52%)
Query: 123 VPSAQQYGVVVARPPLLHGSYVQGP--YGPVLVSPSMFSLQGWSPYATSLNPIX-XXXXX 179
VP++ Q +R + Q P Y +++ + +QGW+PY+ L +
Sbjct: 166 VPTSGQQSYPWSRASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGN 225
Query: 180 XXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQYYMK 239
I S S +++G +E+ FPERPGQ ECQ+YMK
Sbjct: 226 DQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMK 285
Query: 240 TGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH 299
TGDCKFG+ C+FHHPR+ P D LS GLPLRPG C Y + G+CKFGP+CKFDH
Sbjct: 286 TGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH 345
Query: 300 PMGMLSYSPSAS 311
PM + +Y +AS
Sbjct: 346 PMRVFTYDNTAS 357
Score = 306 (112.8 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 9 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 68
GE+PER+GQP C+YY++TGTCK+G +CK+HHPR AG VSLN GYPLR E +C+Y
Sbjct: 80 GEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAY 139
Query: 69 YMKTRQCKFGATCKFHH 85
+++T CKFG TCKF+H
Sbjct: 140 FLRTGHCKFGGTCKFNH 156
Score = 238 (88.8 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 9 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 68
G +PER G+P C YY+RTG C++G++C+++HPR ++ + YP R G+ EC Y
Sbjct: 35 GSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGE-YPERIGQPECEY 93
Query: 69 YMKTRQCKFGATCKFHH 85
Y+KT CKFG TCKFHH
Sbjct: 94 YLKTGTCKFGVTCKFHH 110
Score = 236 (88.1 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 40/75 (53%), Positives = 49/75 (65%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 70
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 71 KTRQCKFGATCKFHH 85
+ CKFG +CKF H
Sbjct: 331 RYGICKFGPSCKFDH 345
Score = 233 (87.1 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 284
+PER GQ EC+YY+KTG CKFG +C+FHHPR V+L+ G PLR C +++
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFL 141
Query: 285 QRGVCKFGPACKFDHP 300
+ G CKFG CKF+HP
Sbjct: 142 RTGHCKFGGTCKFNHP 157
Score = 212 (79.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR--ELIVPKMDVTLSPFG-LPLRPGAAPCT 281
+PERPG+ +C YY++TG C+FGS+CRF+HPR EL++ T G P R G C
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI----ATARMRGEYPERIGQPECE 92
Query: 282 HYVQRGVCKFGPACKFDHP 300
+Y++ G CKFG CKF HP
Sbjct: 93 YYLKTGTCKFGVTCKFHHP 111
Score = 122 (48.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 48 SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 85
S+ ++ YP RPGE +CSYY++T C+FG+TC+F+H
Sbjct: 28 SDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNH 65
Score = 106 (42.4 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR 255
+P R + +C Y+++TG CKFG +C+F+HP+
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQ 158
Score = 100 (40.3 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 58
+P R + C Y++RTG CK+G +CK++HP+ ++ + YP
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYP 175
Score = 38 (18.4 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 305 SYSPSASSLADMPVAPY-PVGSSIGTLAPSSASSD 338
SY+ +PV + P +G+++PS +D
Sbjct: 192 SYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGND 226
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 331 (121.6 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 221 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 280
+E+ FPERPGQ ECQ+YMKTGDCKFG+ C+FHHPR+ P D LS GLPLRPG C
Sbjct: 236 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLC 295
Query: 281 THYVQRGVCKFGPACKFDHPMGMLSYSPSASS 312
Y + G+CKFGP+CKFDHPM + +Y+ + +S
Sbjct: 296 VFYSRYGICKFGPSCKFDHPMRVFTYNNNTAS 327
Score = 302 (111.4 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 46/77 (59%), Positives = 62/77 (80%)
Query: 9 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 68
GE+PER+GQP C++Y++TGTCK+G +CK+HHPR AG +VS+N YPLRP E +CSY
Sbjct: 82 GEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSY 141
Query: 69 YMKTRQCKFGATCKFHH 85
+++ QCKFG TCKF+H
Sbjct: 142 FLRIGQCKFGGTCKFNH 158
Score = 234 (87.4 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 40/75 (53%), Positives = 49/75 (65%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 70
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 71 KTRQCKFGATCKFHH 85
+ CKFG +CKF H
Sbjct: 300 RYGICKFGPSCKFDH 314
Score = 228 (85.3 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 284
+PER GQ EC++Y+KTG CKFG +C+FHHPR V+++ PLRP C++++
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 143
Query: 285 QRGVCKFGPACKFDHP 300
+ G CKFG CKF+HP
Sbjct: 144 RIGQCKFGGTCKFNHP 159
Score = 227 (85.0 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 9 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 68
G +PER G+P C YY+RTG C++G++C+++HP ++ + YP R G+ EC +
Sbjct: 37 GSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGE-YPERIGQPECEF 95
Query: 69 YMKTRQCKFGATCKFHH 85
Y+KT CKFG TCKFHH
Sbjct: 96 YLKTGTCKFGVTCKFHH 112
Score = 202 (76.2 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIVPKMDVTLSPFGLPLRPGAAPCTH 282
+PER G+ +C YY++TG C+FGS+CRF+HP R+L++ + P R G C
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGE---YPERIGQPECEF 95
Query: 283 YVQRGVCKFGPACKFDHPMGMLSYSPSAS-SLADMPVAP 320
Y++ G CKFG CKF HP S S ++ P+ P
Sbjct: 96 YLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRP 134
Score = 112 (44.5 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR 255
+P RP + +C Y+++ G CKFG +C+F+HP+
Sbjct: 130 YPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQ 160
Score = 99 (39.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPL 59
+P R + C Y++R G CK+G +CK++HP+ + +N+ ++ G P+
Sbjct: 130 YPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQS---TNLMVSVRGSPV 175
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 266 (98.7 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 69
E PER+GQP C+Y+++TG CKYG +CKYHHP+ G+ V N G P+R GEK C YY
Sbjct: 86 ELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGA-QPVMFNVIGLPMRLGEKPCPYY 144
Query: 70 MKTRQCKFGATCKFHH 85
++T C+FG CKFHH
Sbjct: 145 LRTGTCRFGVACKFHH 160
Score = 241 (89.9 bits), Expect = 4.9e-20, P = 4.9e-20
Identities = 51/131 (38%), Positives = 74/131 (56%)
Query: 221 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 280
KE PER GQ +C+Y++KTG CK+G +C++HHP++ + V + GLP+R G PC
Sbjct: 84 KEE-LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQ-PVMFNVIGLPMRLGEKPC 141
Query: 281 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAP--YPVG----SSIGTLAPSS 334
+Y++ G C+FG ACKF HP +S +A ++ P A Y G S+ GTL
Sbjct: 142 PYYLRTGTCRFGVACKFHHPQPDNGHS-TAYGMSSFPAADLRYASGLTMMSTYGTLPRPQ 200
Query: 335 ASSDLRPELIS 345
P L+S
Sbjct: 201 VPQSYVPILVS 211
Score = 225 (84.3 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 38/96 (39%), Positives = 61/96 (63%)
Query: 223 HPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTH 282
+P+P+RPG+++CQ+Y++TG C +GSSCR++HP L P+ DV LP R G C +
Sbjct: 42 NPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHL--PQ-DVAYYKEELPERIGQPDCEY 98
Query: 283 YVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPV 318
+++ G CK+GP CK+ HP P ++ +P+
Sbjct: 99 FLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPM 134
Score = 217 (81.4 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 45/115 (39%), Positives = 61/115 (53%)
Query: 227 ERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQR 286
E Q EC+++M TG CK+G C++ HP I ++PF LP RPG C ++
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 287 GVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGT---LAPSSASSD 338
G CKFGP CKFDHPM L Y P + +P P S + T ++P+ SD
Sbjct: 320 GFCKFGPNCKFDHPM--LPY-PGLTMATSLPT---PFASPVTTHQRISPTPNRSD 368
Score = 201 (75.8 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYG--YPLRPGEKECSY 68
+P+R G+ CQ+Y+RTG C YG+SC+Y+HP V+ YY P R G+ +C Y
Sbjct: 44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVA-----YYKEELPERIGQPDCEY 98
Query: 69 YMKTRQCKFGATCKFHH 85
++KT CK+G TCK+HH
Sbjct: 99 FLKTGACKYGPTCKYHH 115
Score = 174 (66.3 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 31/73 (42%), Positives = 38/73 (52%)
Query: 13 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKT 72
E QP C+++M TGTCKYG CKY HP +N + P RPG+ C +
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 73 RQCKFGATCKFHH 85
CKFG CKF H
Sbjct: 320 GFCKFGPNCKFDH 332
Score = 125 (49.1 bits), Expect = 2.4e-31, Sum P(3) = 2.4e-31
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 12 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 45
P R+G+ C YY+RTGTC++G +CK+HHP+ G
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNG 166
Score = 122 (48.0 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 35/114 (30%), Positives = 53/114 (46%)
Query: 226 PERPGQQECQYYMKTGDCKFGSSCRFHHPRE----------LIVPKMDVTLSPFGLPLRP 275
P R G++ C YY++TG C+FG +C+FHHP+ P D+ + GL +
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYAS-GLTMMS 191
Query: 276 --GAAPCTHYVQRGV-CKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSS 326
G P Q V P+ F P G Y +++S+ ++ PY GSS
Sbjct: 192 TYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSS 245
Score = 107 (42.7 bits), Expect = 3.1e-38, Sum P(3) = 3.1e-38
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 223 HPF--PERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 280
+PF P RPGQ C + G CKFG +C+F HP ++P +T++ LP P A+P
Sbjct: 300 NPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP---MLPYPGLTMAT-SLPT-PFASPV 354
Query: 281 THYVQR 286
T + QR
Sbjct: 355 TTH-QR 359
Score = 66 (28.3 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 148 YGPVLVSPSMFSL--QGWSPYATSLN 171
Y P+LVSPS L QGW+PY + N
Sbjct: 205 YVPILVSPSQGFLPPQGWAPYMAASN 230
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 266 (98.7 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 47/94 (50%), Positives = 64/94 (68%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMD-VTLSPFGLPLRPGAAPCTHY 283
FPERP Q EC YYMKTGDCKF +C++HHP+ + PK+ L+ GLPLRP CT+Y
Sbjct: 343 FPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRL-PKLPPYALNDKGLPLRPDQNICTYY 401
Query: 284 VQRGVCKFGPACKFDHPMGMLSYSPSASSLADMP 317
+ G+CKFGPAC+FDH + + S+ ++ + P
Sbjct: 402 SRYGICKFGPACRFDHSVQPPYSTESSQAIVEPP 435
Score = 226 (84.6 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 69
EFPER QP C YYM+TG CK+ +CKYHHP+ + +LN G PLRP + C+YY
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYY 401
Query: 70 MKTRQCKFGATCKFHH 85
+ CKFG C+F H
Sbjct: 402 SRYGICKFGPACRFDH 417
Score = 223 (83.6 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 14 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 73
++G C+YY RTG CKYG +C+++H +G S LN+ G PLRPGE EC YYM+
Sbjct: 158 KLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNG 217
Query: 74 QCKFGATCKFHH 85
CK+GA CKF+H
Sbjct: 218 SCKYGAECKFNH 229
Score = 211 (79.3 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 230 GQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSP----FGLPLRPGAAPCTHYVQ 285
G +C+YY +TG CK+G +CRF+H +PK + +P GLPLRPG C +Y++
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHT----IPKSGLASAPELNFLGLPLRPGEVECPYYMR 215
Query: 286 RGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSS 334
G CK+G CKF+HP P+ D P G SIGT +P +
Sbjct: 216 NGSCKYGAECKFNHP------DPTTIGGTDSPSFRGNNGVSIGTFSPKA 258
Score = 195 (73.7 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 37/105 (35%), Positives = 61/105 (58%)
Query: 220 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIVPKMDVTLSPFGLPLRPGA 277
+ E+ +P RPG ++C +YM+TG CKFGSSC+F+HP R+ + + + + G
Sbjct: 102 ESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGL 161
Query: 278 APCTHYVQRGVCKFGPACKFDH--PMGMLSYSPSASSLADMPVAP 320
C +Y + G CK+G C+F+H P L+ +P + L +P+ P
Sbjct: 162 IDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLG-LPLRP 205
Score = 165 (63.1 bits), Expect = 5.6e-38, Sum P(2) = 5.6e-38
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHP--RQGAGSVSNVSLNYYGYPLRPGEKECSY 68
+P R G C +YMRTG+CK+G+SCK++HP R+ + N + G +C Y
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166
Query: 69 YMKTRQCKFGATCKFHH 85
Y +T CK+G TC+F+H
Sbjct: 167 YFRTGGCKYGETCRFNH 183
Score = 129 (50.5 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 43 GAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 85
G G N S N Y P+RPG ++CS+YM+T CKFG++CKF+H
Sbjct: 95 GDGWSENESENVY--PVRPGAEDCSFYMRTGSCKFGSSCKFNH 135
Score = 119 (46.9 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 226 PERPGQQECQYYMKTGDCKFGSSCRFHHP 254
P RPG+ EC YYM+ G CK+G+ C+F+HP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 114 (45.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 12 PERVGQPVCQYYMRTGTCKYGASCKYHHP 40
P R G+ C YYMR G+CKYGA CK++HP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 247 (92.0 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELI------VPKM-DVTLSPFGLPLRPGA 277
+P+RPGQ EC YYMKTG+CKFG C+FHHP + + P+ +V LS G P R GA
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 278 APCTHYVQRGVCKFGPACKFDHP 300
C +Y++ G CK+G CKFDHP
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHP 499
Score = 232 (86.7 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 41/82 (50%), Positives = 51/82 (62%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVS-------NVSLNYYGYPLRPGE 63
+P+R GQ C YYM+TG CK+G CK+HHP +++ NV L+ GYP R G
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 64 KECSYYMKTRQCKFGATCKFHH 85
C YYMKT CK+GATCKF H
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDH 498
Score = 229 (85.7 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 40/76 (52%), Positives = 55/76 (72%)
Query: 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 69
E+PER G+P C YY++T CKYG+ CK++HPR+ A +VS + + P RP E C++Y
Sbjct: 221 EYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEA-AVSVETQD--SLPERPSEPMCTFY 277
Query: 70 MKTRQCKFGATCKFHH 85
MKT +CKFG +CKFHH
Sbjct: 278 MKTGKCKFGLSCKFHH 293
Score = 222 (83.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 284
+PERPG+ +C YY+KT CK+GS C+F+HPRE ++ S LP RP CT Y+
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDS---LPERPSEPMCTFYM 278
Query: 285 QRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSD 338
+ G CKFG +CKF HP + +P + +GSS+G + A+++
Sbjct: 279 KTGKCKFGLSCKFHHPKDI-----------QLPSSSQDIGSSVGLTSEPDATNN 321
Score = 195 (73.7 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ-GAGSVSNVS----LNYYGYPLRPGEKE 65
+P+R G+ C +YM+T TCK+G SC++ HP G + + + YP RPGE +
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 66 CSYYMKTRQCKFGATCKFHH 85
C YY+KT++CK+G+ CKF+H
Sbjct: 231 CPYYIKTQRCKYGSKCKFNH 250
Score = 187 (70.9 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPK---MDVTLSPF----GLPLRPGA 277
+P+R G+++C +YM+T CKFG SCRF HP + VP+ D +P P RPG
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHP--IWVPEGGIPDWKEAPVVPNEEYPERPGE 228
Query: 278 APCTHYVQRGVCKFGPACKFDHPMGMLSYS-PSASSLADMPVAP 320
C +Y++ CK+G CKF+HP + S + SL + P P
Sbjct: 229 PDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEP 272
Score = 151 (58.2 bits), Expect = 4.9e-25, Sum P(2) = 4.9e-25
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 220 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTL-SPFGLPLRPGAA 278
+ + PERP + C +YMKTG CKFG SC+FHHP+++ +P + S GL P A
Sbjct: 260 ETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDAT 319
Query: 279 PCTH 282
H
Sbjct: 320 NNPH 323
Score = 128 (50.1 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 12 PERVGQPVCQYYMRTGTCKYGASCKYHHPR 41
PER +P+C +YM+TG CK+G SCK+HHP+
Sbjct: 266 PERPSEPMCTFYMKTGKCKFGLSCKFHHPK 295
Score = 123 (48.4 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 11 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 43
+P R G C YYM+TGTCKYGA+CK+ HP G
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502
Score = 119 (46.9 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNY 54
P R G+ C +Y++TG+CKYGA+C+Y+HP + A +NY
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNY 380
Score = 116 (45.9 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 226 PERPGQQECQYYMKTGDCKFGSSCRFHHP-RELIVPK 261
P R G+ +C +Y+KTG CK+G++CR++HP R +P+
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQ 374
Score = 113 (44.8 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 53 NYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 85
N G P+R GE +C +Y+KT CK+GATC+++H
Sbjct: 333 NSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNH 365
Score = 108 (43.1 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 257 LIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLS 305
L P + V + + P RPG + C +Y++ G CKFG CKF HP LS
Sbjct: 405 LTQPTLGVISATY--PQRPGQSECDYYMKTGECKFGERCKFHHPADRLS 451
Score = 108 (43.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 270 GLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGT 329
GLP+R G C Y++ G CK+G C+++HP ++ P A+ + V+ ++G
Sbjct: 336 GLPVRSGEVDCPFYLKTGSCKYGATCRYNHPE-RTAFIPQAAGVNYSLVSSNTANLNLGL 394
Query: 330 LAPSSA 335
+ P+++
Sbjct: 395 VTPATS 400
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 222 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 281
E FPERPG+ EC YY++TG+C +C++HHP+ + + TL+ GLPLRPG A C
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62
Query: 282 HYVQRGVCKFGPACKFDH 299
HY + G+C+ GP CKFDH
Sbjct: 63 HYSRFGICRSGPTCKFDH 80
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 69
+FPER G+P C YY+RTG C +CKYHHP+ S +LN G PLRPG+ C +Y
Sbjct: 5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHY 64
Query: 70 MKTRQCKFGATCKFHH 85
+ C+ G TCKF H
Sbjct: 65 SRFGICRSGPTCKFDH 80
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 87 (35.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 26/76 (34%), Positives = 33/76 (43%)
Query: 233 ECQYYMKTGDCKFGSSCRFHHPRELI-VPKMDVTLSPFGLPLRPGAAP-------CTHYV 284
ECQ + ++G C G C + H RE +P + F PL P A C +YV
Sbjct: 119 ECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGF-CPLGPLCAKRHVRRRLCPYYV 177
Query: 285 QRGVCKFGPACKFDHP 300
G C GP C HP
Sbjct: 178 A-GFCPEGPNCANAHP 192
Score = 84 (34.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 18 PVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKF 77
PVC+ Y G C G +C HP + S + + G C +++K CK
Sbjct: 45 PVCKAYSE-GHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGL-CKK 102
Query: 78 GATCKFHH 85
G C++ H
Sbjct: 103 GMKCEYLH 110
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 129 (50.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 220 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAP 279
++ P+P RPG+++CQ+Y+K G C++ SSCRF+HP T P LP+R
Sbjct: 47 RQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHP----------TQRPQELPVRI---- 92
Query: 280 CTHYVQRGVCK 290
C H + R V +
Sbjct: 93 CKHIMDRNVAE 103
>MGI|MGI:99180 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=ISO;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IGI] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0006950 "response to stress" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0017091 "AU-rich
element binding" evidence=ISO;IDA] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0019957 "C-C chemokine binding"
evidence=ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=IDA] [GO:0043488 "regulation of mRNA stability"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IMP] [GO:0050779 "RNA destabilization"
evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071889 "14-3-3 protein binding" evidence=ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:99180 GO:GO:0005829 GO:GO:0005634 GO:GO:0006950
GO:GO:0046872 GO:GO:0003677 GO:GO:0050728 GO:GO:0008270
GO:GO:0007243 GO:GO:0000122 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0035925 GO:GO:0050779
HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538 KO:K15308
OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:M57422 EMBL:M58691 EMBL:X14678
EMBL:M58565 EMBL:L42317 EMBL:BC021391 IPI:IPI00132695 PIR:A36600
PIR:S04743 RefSeq:NP_035886.1 UniGene:Mm.389856 PDB:1M9O
PDBsum:1M9O ProteinModelPortal:P22893 SMR:P22893 IntAct:P22893
MINT:MINT-225240 STRING:P22893 PhosphoSite:P22893 PRIDE:P22893
Ensembl:ENSMUST00000051241 GeneID:22695 KEGG:mmu:22695
InParanoid:P22893 EvolutionaryTrace:P22893 NextBio:303151
Bgee:P22893 CleanEx:MM_ZFP36 Genevestigator:P22893
GermOnline:ENSMUSG00000044786 Uniprot:P22893
Length = 319
Score = 91 (37.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 100 LCRTYSESGRCRYGAKCQFAH---GLGELRQANR----HPKYKTELCHKFYLQGR-CPYG 151
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 152 SRCHFIH 158
Score = 79 (32.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/89 (34%), Positives = 37/89 (41%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 299
SSC F P P D+ LSP PG P T C P+C+
Sbjct: 201 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVTRRDPNQACC--PSCRRSTTPSTIWG 256
Query: 300 PMGMLSYSPSASSLADMPVAPYPVGSSIG 328
P+G L+ SPSA SL P GSS+G
Sbjct: 257 PLGGLARSPSAHSLGSDPDDYASSGSSLG 285
>RGD|620722 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS;IDA] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO;ISS] [GO:0006950 "response to stress"
evidence=IEA;ISO;ISS] [GO:0007243 "intracellular protein kinase
cascade" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA;ISO;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0019957 "C-C chemokine binding"
evidence=IEA;ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA;ISO;ISS] [GO:0035925 "mRNA 3'-UTR AU-rich
region binding" evidence=IEA;ISO] [GO:0043488 "regulation of mRNA
stability" evidence=ISO] [GO:0045638 "negative regulation of
myeloid cell differentiation" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA;ISO] [GO:0050779 "RNA destabilization"
evidence=IEA;ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO;ISS] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA;ISO;ISS] [GO:0071889 "14-3-3 protein
binding" evidence=IEA;ISO;ISS] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:620722 GO:GO:0005829
GO:GO:0005634 GO:GO:0045893 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0006402
GO:GO:0071889 GO:GO:0010494 GO:GO:0060213 eggNOG:COG5063
GO:GO:0000289 GO:GO:0045638 GO:GO:0070935 GO:GO:0032680
GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:X63369 EMBL:AB025017
EMBL:BC060308 IPI:IPI00192126 PIR:JC1255 RefSeq:NP_579824.2
UniGene:Rn.82737 ProteinModelPortal:P47973 SMR:P47973 STRING:P47973
PhosphoSite:P47973 PRIDE:P47973 GeneID:79426 KEGG:rno:79426
UCSC:RGD:620722 InParanoid:P47973 NextBio:614778
Genevestigator:P47973 GermOnline:ENSRNOG00000019673 Uniprot:P47973
Length = 320
Score = 91 (37.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 101 LCRTYSESGRCRYGAKCQFAH---GPGELRQANR----HPKYKTELCHKFYLQGR-CPYG 152
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 153 SRCHFIH 159
Score = 74 (31.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/89 (33%), Positives = 37/89 (41%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 299
SSC F P P D+ LSP PG P + C P+C+
Sbjct: 202 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVSRRDPTPACC--PSCRRSTTPSTIWG 257
Query: 300 PMGMLSYSPSASSLADMPVAPYPVGSSIG 328
P+G L+ SPSA SL P GSS+G
Sbjct: 258 PLGGLARSPSAHSLGSDPDDYASSGSSLG 286
>UNIPROTKB|P47973 [details] [associations]
symbol:Zfp36 "Tristetraprolin" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0019957 "C-C chemokine binding" evidence=IEA]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 RGD:620722 GO:GO:0005829 GO:GO:0005634 GO:GO:0045893
GO:GO:0006950 GO:GO:0046872 GO:GO:0003677 GO:GO:0050728
GO:GO:0008270 GO:GO:0003729 GO:GO:0007243 GO:GO:0017091
GO:GO:0000122 GO:GO:0006402 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479
HOVERGEN:HBG008483 CTD:7538 KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4
EMBL:X63369 EMBL:AB025017 EMBL:BC060308 IPI:IPI00192126 PIR:JC1255
RefSeq:NP_579824.2 UniGene:Rn.82737 ProteinModelPortal:P47973
SMR:P47973 STRING:P47973 PhosphoSite:P47973 PRIDE:P47973
GeneID:79426 KEGG:rno:79426 UCSC:RGD:620722 InParanoid:P47973
NextBio:614778 Genevestigator:P47973 GermOnline:ENSRNOG00000019673
Uniprot:P47973
Length = 320
Score = 91 (37.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 101 LCRTYSESGRCRYGAKCQFAH---GPGELRQANR----HPKYKTELCHKFYLQGR-CPYG 152
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 153 SRCHFIH 159
Score = 74 (31.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/89 (33%), Positives = 37/89 (41%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 299
SSC F P P D+ LSP PG P + C P+C+
Sbjct: 202 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVSRRDPTPACC--PSCRRSTTPSTIWG 257
Query: 300 PMGMLSYSPSASSLADMPVAPYPVGSSIG 328
P+G L+ SPSA SL P GSS+G
Sbjct: 258 PLGGLARSPSAHSLGSDPDDYASSGSSLG 286
>UNIPROTKB|D0VE66 [details] [associations]
symbol:LOC100623625 "Tristetraprolin" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:FP102918 EMBL:FP236263
EMBL:GU066778 EMBL:HM484335 EMBL:HM480487 RefSeq:NP_001161891.1
RefSeq:XP_003355955.1 UniGene:Ssc.28024 STRING:D0VE66
Ensembl:ENSSSCT00000011714 Ensembl:ENSSSCT00000026750
GeneID:100316849 GeneID:100623625 KEGG:ssc:100316849
KEGG:ssc:100623625 Uniprot:D0VE66
Length = 326
Score = 90 (36.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ + +G C+YGA C++ H G G + S +P E +Y++ R C +G
Sbjct: 107 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HPKYKTELCHKFYLQGR-CPYG 158
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 159 SRCHFIH 165
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/88 (31%), Positives = 33/88 (37%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK------FDHP 300
SSC F P D+ LSP PG C P+C+ P
Sbjct: 208 SSCSFSPSSSPPPPPGDLPLSPSAFSAAPGTPVARRDPTPACC---PSCRRATPSSIWGP 264
Query: 301 MGMLSYSPSASSLADMPVAPYPVGSSIG 328
+G L SPSA SL P GSS+G
Sbjct: 265 LGGLPRSPSAHSLGSDPDEYASSGSSLG 292
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 82 (33.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 220 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR---ELIVPKMDVTLSP--FGLPLR 274
+++ P R C+ + G C FG+ C F H E + + T P +
Sbjct: 125 KEQRPIRPRRRNVPCRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQSQEWK 184
Query: 275 PGAAPCTHYVQRGVCKFGPACKFDH 299
P A C + G C +G C+F H
Sbjct: 185 PRGALCRTFSAFGFCLYGTRCRFQH 209
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C Y TGTCKY C++ H G + +V + Y + C Y C +G
Sbjct: 64 LCSRYAETGTCKYAERCQFAH---GLHDL-HVPSRHPKYKT----ELCRTYHTAGYCVYG 115
Query: 79 ATCKFHH 85
C F H
Sbjct: 116 TRCLFVH 122
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 79 (32.9 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 58
+C+YY + G C YG C+Y H R A + V + P
Sbjct: 36 ICKYYQK-GYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVP 74
Score = 64 (27.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 231 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 269
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 168 QQLCPY-AAAGECRFGDACVYLHGEVCEICRLQV-LHPF 204
Score = 55 (24.4 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 276 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 305
G C ++ Q +G C FG C + H P G L+
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
>UNIPROTKB|E2RKS9 [details] [associations]
symbol:ZFP36 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071889 "14-3-3 protein binding"
evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0050779 "RNA destabilization" evidence=IEA] [GO:0050728
"negative regulation of inflammatory response" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0035925 "mRNA 3'-UTR AU-rich region binding"
evidence=IEA] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA] [GO:0019957 "C-C chemokine binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005829 GO:GO:0005634
GO:GO:0006950 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0010494
GO:GO:0060213 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GeneTree:ENSGT00530000063262 GO:GO:0032680 GO:GO:0050779
OMA:RRLPIFN EMBL:AAEX03000957 Ensembl:ENSCAFT00000008910
Uniprot:E2RKS9
Length = 324
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ + +G C+YGA C++ H G G + S +P + K C + C +G
Sbjct: 106 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HP-KYKTKVCHKFYLQGGCPYG 157
Query: 79 ATCKF 83
+ C F
Sbjct: 158 SRCHF 162
Score = 78 (32.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 30/88 (34%), Positives = 36/88 (40%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------ 300
SSC F P D+ LSP PG P VC P+C+ P
Sbjct: 206 SSCSFSPSSSPPPPPGDLPLSPSAFSAAPGT-PVARRDPTTVCC--PSCRRATPSSVWGP 262
Query: 301 MGMLSYSPSASSLADMPVAPYPVGSSIG 328
+G L+ SPSA SL P GSS+G
Sbjct: 263 LGGLARSPSAQSLGSDPEEYASSGSSLG 290
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 79 (32.9 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPG 62
+C+YY + G C YG C+Y H R A + V +G PG
Sbjct: 36 ICKYYQK-GYCAYGTRCRYDHTRPSAAAGGAVGTMPHGVS-SPG 77
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 231 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 269
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 168 QQLCPY-AAAGECRFGDACVYLHGEVCEICRLRV-LHPF 204
Score = 55 (24.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 276 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 305
G C ++ Q +G C FG C + H P G L+
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
>UNIPROTKB|P26651 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0050779 "RNA destabilization" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IMP;IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019957 "C-C chemokine binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0019901 "protein kinase binding"
evidence=IPI] [GO:0006950 "response to stress" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0071889
"14-3-3 protein binding" evidence=IDA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA] [GO:1900153
"positive regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0003727 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483
CTD:7538 KO:K15308 EMBL:M92843 EMBL:M92844 EMBL:M63625
EMBL:AK314042 EMBL:AY771351 EMBL:BC009693 IPI:IPI00000893
PIR:S34427 RefSeq:NP_003398.2 UniGene:Hs.534052
ProteinModelPortal:P26651 SMR:P26651 DIP:DIP-29845N IntAct:P26651
MINT:MINT-1171915 STRING:P26651 PhosphoSite:P26651 DMDM:136471
PRIDE:P26651 DNASU:7538 Ensembl:ENST00000248673 GeneID:7538
KEGG:hsa:7538 UCSC:uc002olh.1 GeneCards:GC19P039897 HGNC:HGNC:12862
HPA:HPA006009 MIM:190700 neXtProt:NX_P26651 PharmGKB:PA37451
InParanoid:P26651 OMA:RRLPIFN OrthoDB:EOG4S4PH4 PhylomeDB:P26651
ChiTaRS:ZFP36 GenomeRNAi:7538 NextBio:29497 Bgee:P26651
CleanEx:HS_ZFP36 Genevestigator:P26651 GermOnline:ENSG00000128016
Uniprot:P26651
Length = 326
Score = 94 (38.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 12 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMK 71
P R +C+ + +G C+YGA C++ H G G + + +P E +Y++
Sbjct: 101 PSRYKTELCRTFSESGRCRYGAKCQFAH---GLGELRQANR----HPKYKTELCHKFYLQ 153
Query: 72 TRQCKFGATCKFHH 85
R C +G+ C F H
Sbjct: 154 GR-CPYGSRCHFIH 166
Score = 59 (25.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 28/88 (31%), Positives = 34/88 (38%)
Query: 247 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------ 300
SS F P P D+ LSP PG P VC P+C+ P
Sbjct: 209 SSSSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PLARRDPTPVCC--PSCRRATPISVWGP 264
Query: 301 MGMLSYSPSASSLADMPVAPYPVGSSIG 328
+G L +PS SL P GSS+G
Sbjct: 265 LGGLVRTPSVQSLGSDPDEYASSGSSLG 292
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 76 (31.8 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 19 VCQYYMRTGTCKYGASCKYHH--PRQGAG 45
+C+YY + G C YGA C+Y H P AG
Sbjct: 36 ICKYYQK-GYCAYGARCRYDHTKPPAAAG 63
Score = 62 (26.9 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 231 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 269
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 169 QQLCPY-AAAGECRFGDACVYLHGDMCEICRLQV-LHPF 205
Score = 55 (24.4 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 276 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 305
G C ++ Q +G C FG C + H P G L+
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 356
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 76 (31.8 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 19 VCQYYMRTGTCKYGASCKYHH--PRQGAG 45
+C+YY + G C YGA C+Y H P AG
Sbjct: 36 ICKYYQK-GYCAYGARCRYDHTKPPAAAG 63
Score = 62 (26.9 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 231 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 269
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 169 QQLCPY-AAAGECRFGDACVYLHGDMCEICRLQV-LHPF 205
Score = 55 (24.4 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 276 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 305
G C ++ Q +G C FG C + H P G L+
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 356
>UNIPROTKB|Q0VCR3 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0071889 "14-3-3 protein binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IEA] [GO:0019957 "C-C
chemokine binding" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0007243 "intracellular protein kinase cascade"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0006950 GO:GO:0050728 GO:GO:0008270
GO:GO:0003729 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0010494 GO:GO:0060213 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GeneTree:ENSGT00530000063262 GO:GO:0032680
GO:GO:0050779 HOVERGEN:HBG008483 IPI:IPI00698292 UniGene:Bt.3863
OMA:RRLPIFN EMBL:DAAA02047057 EMBL:DAAA02047055 EMBL:DAAA02047056
EMBL:BC120043 SMR:Q0VCR3 Ensembl:ENSBTAT00000066266 Uniprot:Q0VCR3
Length = 325
Score = 90 (36.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ + +G C+YGA C++ H G G + S +P E +Y++ R C +G
Sbjct: 106 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HPKYKTELCHKFYLQGR-CPYG 157
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 158 SRCHFIH 164
Score = 63 (27.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 25/75 (33%), Positives = 32/75 (42%)
Query: 260 PKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------MGMLSYSPSASSL 313
P D+ LSP PG P + C P+C+ P +G L+ SPSA SL
Sbjct: 220 PPGDLLLSPSAFSAAPGT-PVSRRDPTPACC--PSCRRATPNSVWGPVGGLARSPSAHSL 276
Query: 314 ADMPVAPYPVGSSIG 328
P GSS+G
Sbjct: 277 GSDPDEYASSGSSLG 291
>UNIPROTKB|Q6GLD9 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8364 "Xenopus (Silurana) tropicalis" [GO:0006351
"transcription, DNA-dependent" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0009798 "axis specification"
evidence=ISS] [GO:0014065 "phosphatidylinositol 3-kinase cascade"
evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0050768
"negative regulation of neurogenesis" evidence=ISS]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0016567
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
eggNOG:COG5084 GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:BC074559 RefSeq:NP_001005447.1
UniGene:Str.24743 ProteinModelPortal:Q6GLD9 GeneID:448038
KEGG:xtr:448038 Xenbase:XB-GENE-5879487 InParanoid:Q6GLD9
Uniprot:Q6GLD9
Length = 418
Score = 82 (33.9 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSV 47
VC++Y R G C YGA C+Y H + GSV
Sbjct: 36 VCRFYQR-GQCAYGARCRYDHVKPCNGSV 63
Score = 59 (25.8 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 225 FPERPGQQECQYYMKTGDCKFGSSCRFHH 253
+P+ P QQ C + + G C +G SC + H
Sbjct: 162 YPDAP-QQLCPF-AQAGGCHYGESCPYIH 188
Score = 51 (23.0 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 276 GAAPCTHYVQ-RGVCKFGPACKFDH 299
G C ++ Q RG C FG C + H
Sbjct: 322 GKKACKYFDQGRGTCPFGGKCLYLH 346
>UNIPROTKB|G3MWV8 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 EMBL:DAAA02047057 EMBL:DAAA02047055
EMBL:DAAA02047056 Ensembl:ENSBTAT00000011308 Uniprot:G3MWV8
Length = 324
Score = 90 (36.7 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 19 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 78
+C+ + +G C+YGA C++ H G G + S +P E +Y++ R C +G
Sbjct: 106 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HPKYKTELCHKFYLQGR-CPYG 157
Query: 79 ATCKFHH 85
+ C F H
Sbjct: 158 SRCHFIH 164
Score = 62 (26.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 25/75 (33%), Positives = 31/75 (41%)
Query: 260 PKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------MGMLSYSPSASSL 313
P D+ LSP PG C C P+C+ P +G L+ SPSA SL
Sbjct: 220 PPGDLLLSPSAFSAAPGHL-CRRDPTPACC---PSCRRATPNSVWGPVGGLARSPSAHSL 275
Query: 314 ADMPVAPYPVGSSIG 328
P GSS+G
Sbjct: 276 GSDPDEYASSGSSLG 290
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 403 302 0.00097 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 605 (64 KB)
Total size of DFA: 218 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.58u 0.10s 22.68t Elapsed: 00:00:01
Total cpu time: 22.58u 0.10s 22.68t Elapsed: 00:00:01
Start: Sat May 11 15:55:04 2013 End: Sat May 11 15:55:05 2013