Query 015670
Match_columns 403
No_of_seqs 350 out of 1397
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.5 1E-14 3.4E-19 115.1 3.4 69 13-89 8-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 2.5E-14 8.4E-19 112.9 3.8 66 229-302 10-75 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.3 7.5E-13 2.6E-17 110.4 5.2 56 224-302 6-61 (98)
4 2cqe_A KIAA1064 protein; CCCH 99.3 6.1E-13 2.1E-17 111.0 4.6 56 10-88 6-61 (98)
5 2d9n_A Cleavage and polyadenyl 99.3 1.3E-12 4.5E-17 104.1 5.0 56 15-89 8-63 (77)
6 2rhk_C Cleavage and polyadenyl 99.3 5.6E-13 1.9E-17 105.4 2.5 58 13-89 12-69 (72)
7 2d9n_A Cleavage and polyadenyl 99.2 1.3E-11 4.4E-16 98.4 4.4 56 229-303 8-63 (77)
8 2rhk_C Cleavage and polyadenyl 99.2 1.1E-11 3.8E-16 97.9 3.3 57 228-303 13-69 (72)
9 3d2q_A Muscleblind-like protei 99.0 7.7E-11 2.6E-15 92.3 3.2 59 17-88 6-65 (70)
10 2e5s_A Otthump00000018578; ZF- 99.0 9.2E-11 3.2E-15 97.9 2.0 61 15-88 18-79 (98)
11 2e5s_A Otthump00000018578; ZF- 98.9 2.7E-10 9.4E-15 95.1 3.3 69 223-304 12-81 (98)
12 3d2q_A Muscleblind-like protei 98.9 3.6E-10 1.2E-14 88.6 2.0 62 230-304 5-67 (70)
13 3d2n_A Muscleblind-like protei 98.9 9.2E-10 3.1E-14 89.4 3.4 58 16-88 8-66 (83)
14 2rpp_A Muscleblind-like protei 98.7 4E-09 1.4E-13 86.7 2.6 58 16-88 16-74 (89)
15 3d2n_A Muscleblind-like protei 98.7 9E-09 3.1E-13 83.5 3.5 60 230-304 8-68 (83)
16 2rpp_A Muscleblind-like protei 98.6 4.7E-08 1.6E-12 80.4 4.8 59 231-304 17-76 (89)
17 3u9g_A Zinc finger CCCH-type a 97.1 0.00021 7.1E-09 67.7 3.1 43 232-302 152-198 (229)
18 3u9g_A Zinc finger CCCH-type a 97.1 0.00021 7.2E-09 67.6 3.0 43 18-88 152-198 (229)
19 2d9m_A Zinc finger CCCH-type d 96.9 0.00015 5.1E-09 57.0 0.1 26 232-258 21-46 (69)
20 2d9m_A Zinc finger CCCH-type d 96.7 0.00041 1.4E-08 54.5 1.1 27 17-44 20-46 (69)
21 2fc6_A Nuclear, target of EGR1 96.1 0.0022 7.6E-08 47.2 1.8 29 276-304 19-47 (50)
22 2fc6_A Nuclear, target of EGR1 95.9 0.0031 1.1E-07 46.4 1.9 30 229-258 18-47 (50)
23 2lhn_A Nuclear polyadenylated 94.5 0.0023 7.7E-08 51.6 0.0 22 231-256 9-30 (80)
24 2lhn_A Nuclear polyadenylated 93.6 0.0061 2.1E-07 49.1 0.0 23 16-42 8-30 (80)
25 3u1l_A PRE-mRNA-splicing facto 93.3 0.024 8.3E-07 53.7 1.5 28 15-43 68-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 92.6 0.028 9.6E-07 53.3 0.8 27 63-90 70-96 (240)
27 2kqb_A Aprataxin and PNK-like 78.0 1.3 4.5E-05 36.2 2.8 52 242-306 16-76 (89)
28 3v33_A Ribonuclease ZC3H12A; r 77.8 0.45 1.5E-05 44.9 0.0 25 230-257 191-215 (223)
29 3v33_A Ribonuclease ZC3H12A; r 69.6 0.95 3.3E-05 42.7 0.0 24 277-303 192-215 (223)
30 2kuo_A Aprataxin and PNK-like 67.0 1.2 4.3E-05 36.5 0.2 11 286-296 61-71 (91)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.48 E-value=1e-14 Score=115.15 Aligned_cols=69 Identities=23% Similarity=0.619 Sum_probs=29.4
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCCC
Q 015670 13 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 89 (403)
Q Consensus 13 eR~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~~ 89 (403)
.+.++.+|++|+++|.|++|++|+|+|+..+...... ..+.++.+|++|.++|.|++|++|+|.|....
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3567899999987799999999999999987542110 11234678998888899999999999998753
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.46 E-value=2.5e-14 Score=112.88 Aligned_cols=66 Identities=23% Similarity=0.587 Sum_probs=28.2
Q ss_pred CCcccchhhhcCCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 015670 229 PGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMG 302 (403)
Q Consensus 229 p~q~~Cryy~KtG~CkfG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~ 302 (403)
.++.+|++|+++|.|+||++|+|+|+.+....... ..+..+.+|++|.++|.|+||.+|+|.|+..
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 46789999998999999999999998876543210 1123467899888899999999999999874
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.33 E-value=7.5e-13 Score=110.43 Aligned_cols=56 Identities=29% Similarity=0.618 Sum_probs=49.0
Q ss_pred CCCCCCCcccchhhhcCCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 015670 224 PFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMG 302 (403)
Q Consensus 224 ~~PeRp~q~~Cryy~KtG~CkfG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~ 302 (403)
.+..+.++.+|+||+ +|.|++|++|+|+|+ ..+|++|++.|.|++|++|+|.|+..
T Consensus 6 ~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 6 SGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 355567889999998 899999999999996 14799998899999999999999965
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.33 E-value=6.1e-13 Score=111.00 Aligned_cols=56 Identities=27% Similarity=0.640 Sum_probs=48.5
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 10 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 10 ~~peR~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
++..+.++.+|+||++ |.|++|++|+|+|+ ..+|++|+++|.|++|++|+|.|...
T Consensus 6 ~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 6 SGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cCCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4555678899999986 99999999999999 12699998669999999999999864
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=104.13 Aligned_cols=56 Identities=32% Similarity=0.745 Sum_probs=49.2
Q ss_pred CCccccccccccCCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCCC
Q 015670 15 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 89 (403)
Q Consensus 15 ~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~~ 89 (403)
..+++|+||++ |.|++|++|+|+|+..... .++|+||+++|.|. |++|+|.|..+.
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~~-----------------~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMTK-----------------MPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTTT-----------------SCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccCc-----------------CCCCcccCCCCccC-CCCeeccCCCcc
Confidence 45789999999 9999999999999987531 34799999999999 999999999874
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.30 E-value=5.6e-13 Score=105.41 Aligned_cols=58 Identities=31% Similarity=0.698 Sum_probs=50.1
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCCC
Q 015670 13 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 89 (403)
Q Consensus 13 eR~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~~ 89 (403)
....+++|+||++ |.|++|++|+|+|+.+... .++|+||++.|.|.+ ++|+|.|..+.
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~~-----------------~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMTK-----------------MSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTTS-----------------CCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCcccccccc-----------------CCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3466789999999 9999999999999976431 347999999899999 99999999874
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=98.40 Aligned_cols=56 Identities=27% Similarity=0.606 Sum_probs=46.9
Q ss_pred CCcccchhhhcCCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 015670 229 PGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGM 303 (403)
Q Consensus 229 p~q~~Cryy~KtG~CkfG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~ 303 (403)
.++.+|+||++ |.|++|++|+|+|+.+.. ..++|+||+++|.|. |++|+|.|....
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 45689999995 999999999999976531 135799998779999 999999999753
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=97.93 Aligned_cols=57 Identities=26% Similarity=0.574 Sum_probs=47.3
Q ss_pred CCCcccchhhhcCCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 015670 228 RPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGM 303 (403)
Q Consensus 228 Rp~q~~Cryy~KtG~CkfG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~ 303 (403)
..++++|+||++ |.|++|++|+|+|+.+.. ..++|+||++.|.|.+ ++|+|.|....
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 356789999995 999999999999975431 1458999976699999 99999998754
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.04 E-value=7.7e-11 Score=92.35 Aligned_cols=59 Identities=31% Similarity=0.715 Sum_probs=46.6
Q ss_pred ccccccccccCCCCCCC-CCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 17 QPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 17 ~~~CryylrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
..+|++|++ |.|++|+ .|+|+|+.+..... +......+|.+|++ |.|..| .|+|.|+.+
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 579999998 9999999 59999998754210 01122457999999 999999 999999864
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.2e-11 Score=97.92 Aligned_cols=61 Identities=28% Similarity=0.645 Sum_probs=48.8
Q ss_pred CCccccccccccCCCCCCC-CCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 15 VGQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 15 ~g~~~CryylrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
....+|++|++ |.|++|+ .|+|+|+.+..... +......+|.+|++ |.|.+| .|+|.|+..
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 34679999999 9999999 79999998764210 01123458999999 999999 999999985
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.7e-10 Score=95.06 Aligned_cols=69 Identities=26% Similarity=0.640 Sum_probs=51.6
Q ss_pred CCCCCCCCcccchhhhcCCCCCCCC-CCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCC
Q 015670 223 HPFPERPGQQECQYYMKTGDCKFGS-SCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPM 301 (403)
Q Consensus 223 ~~~PeRp~q~~Cryy~KtG~CkfG~-~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~ 301 (403)
+......+..+|++|++ |.|+.|+ .|+|+|+.+..... +.....++|.+|+ .|.|..| +|+|.|+.
T Consensus 12 ~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 12 QKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYI-KGRCMRE-KCKYFHPP 78 (98)
T ss_dssp CCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHH-HTCCCCT-TCCSBCCC
T ss_pred ccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhc-cCCCCCC-CcCccCCh
Confidence 33444455789999995 9999999 79999987654311 1112357899995 6999999 99999998
Q ss_pred CCC
Q 015670 302 GML 304 (403)
Q Consensus 302 ~~~ 304 (403)
..+
T Consensus 79 ~~l 81 (98)
T 2e5s_A 79 AHL 81 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.90 E-value=3.6e-10 Score=88.57 Aligned_cols=62 Identities=31% Similarity=0.722 Sum_probs=47.3
Q ss_pred CcccchhhhcCCCCCCCC-CCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 015670 230 GQQECQYYMKTGDCKFGS-SCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGML 304 (403)
Q Consensus 230 ~q~~Cryy~KtG~CkfG~-~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~~ 304 (403)
...+|++|+ .|.|+.|+ .|+|+|+.+..... +.....++|.+|+ .|.|..| +|+|.|+...|
T Consensus 5 k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 5 RLEVCREYQ-RGNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHH
T ss_pred cchhCHHHh-cCCCCCCCCCCCCccCccccccc----------ccCCcceeccccC-cCCCCCC-CcCeeCCHHHH
Confidence 356899998 79999999 59999987643211 1112357899996 5999999 99999997543
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.86 E-value=9.2e-10 Score=89.38 Aligned_cols=58 Identities=33% Similarity=0.714 Sum_probs=46.9
Q ss_pred CccccccccccCCCCCCC-CCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 16 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 16 g~~~CryylrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
...+|++|++ |.|++|+ .|+|+|+...... .. ....+|.+|++ |.|..+ .|+|.|+..
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~-~~-----------~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQV-EN-----------GRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE-ET-----------TEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCccccc-cC-----------CceeehhHhhh-ccccCC-CcceeCChH
Confidence 4679999999 9999997 9999999875321 10 11347999999 999998 999999975
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.71 E-value=4e-09 Score=86.72 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=47.0
Q ss_pred CccccccccccCCCCCCC-CCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 16 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 16 g~~~CryylrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
...+|++|++ |.|++|+ .|+|+|+...... .. ....+|.+|++ |.|..+ .|+|.|+..
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-~~-----------~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-EN-----------GRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-BT-----------TBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccccc-cC-----------Cceeeehhhhh-CcCCCC-CcceecCHH
Confidence 3679999999 9999998 9999999876321 10 01347999999 999987 999999975
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.67 E-value=9e-09 Score=83.54 Aligned_cols=60 Identities=25% Similarity=0.598 Sum_probs=46.2
Q ss_pred CcccchhhhcCCCCCCCC-CCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 015670 230 GQQECQYYMKTGDCKFGS-SCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGML 304 (403)
Q Consensus 230 ~q~~Cryy~KtG~CkfG~-~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~~ 304 (403)
...+|++|++ |.|+.|+ .|+|+|+.+...-. ....++|.+|+ .|.|..+ .|+|.|+...+
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSL-KGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHH-TTCCCCS-SCSSCCCCHHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhh-hccccCC-CcceeCChHHH
Confidence 3478999996 9999997 99999987642111 01246899995 6999998 99999997543
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.56 E-value=4.7e-08 Score=80.38 Aligned_cols=59 Identities=25% Similarity=0.616 Sum_probs=46.4
Q ss_pred cccchhhhcCCCCCCCC-CCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 015670 231 QQECQYYMKTGDCKFGS-SCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGML 304 (403)
Q Consensus 231 q~~Cryy~KtG~CkfG~-~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~~ 304 (403)
..+|++|++ |.|+.|+ .|+|+|+.+...-.. -..++|.+|+ .|.|..+ .|||.|+...+
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~~------------~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVEN------------GRVIACFDSL-KGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCBT------------TBEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccccC------------Cceeeehhhh-hCcCCCC-CcceecCHHHH
Confidence 568999996 9999998 999999876532110 1257899995 7999987 99999998543
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.11 E-value=0.00021 Score=67.66 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=38.4
Q ss_pred ccchhhhcC----CCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 015670 232 QECQYYMKT----GDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMG 302 (403)
Q Consensus 232 ~~Cryy~Kt----G~CkfG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~ 302 (403)
.+|.+| |. |.|+|+++|...| +|++|+ .|.|+| .+||..|...
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl-~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFT-RGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHH-TTCCCC-SSCSSCCCTT
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhh-cCCcCC-CCccCccCcc
Confidence 689999 73 6899999999999 799995 799999 7999999863
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.10 E-value=0.00021 Score=67.63 Aligned_cols=43 Identities=23% Similarity=0.649 Sum_probs=38.1
Q ss_pred ccccccccc----CCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCC
Q 015670 18 PVCQYYMRT----GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 88 (403)
Q Consensus 18 ~~Cryylrt----G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~ 88 (403)
.+|.+| +. |.|+++++|...| +|++|++ |.|+| .+||.+|...
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence 579999 73 5899999998887 5999999 99999 8999999974
No 19
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.00015 Score=56.99 Aligned_cols=26 Identities=38% Similarity=0.885 Sum_probs=23.2
Q ss_pred ccchhhhcCCCCCCCCCCCCCCCCCcc
Q 015670 232 QECQYYMKTGDCKFGSSCRFHHPRELI 258 (403)
Q Consensus 232 ~~Cryy~KtG~CkfG~~CkF~Hp~~~~ 258 (403)
.+|++|+ +|.|+||++|.|+|..+++
T Consensus 21 ~LC~~~~-~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 21 SICDRYM-NGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp SBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred ccCcccC-cCCCCCCCccCCcCCHHHH
Confidence 8999996 7999999999999987654
No 20
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00041 Score=54.47 Aligned_cols=27 Identities=41% Similarity=0.879 Sum_probs=24.0
Q ss_pred ccccccccccCCCCCCCCCCCCcCCCCC
Q 015670 17 QPVCQYYMRTGTCKYGASCKYHHPRQGA 44 (403)
Q Consensus 17 ~~~CryylrtG~Ck~G~~CkF~H~~~~~ 44 (403)
-.+|+.|+. |.|+||++|.|+|..++.
T Consensus 20 ~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 20 FSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred cccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 489999965 999999999999988765
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.05 E-value=0.0022 Score=47.21 Aligned_cols=29 Identities=24% Similarity=0.626 Sum_probs=26.0
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCC
Q 015670 276 GAAPCTHYVQRGVCKFGPACKFDHPMGML 304 (403)
Q Consensus 276 ~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~~ 304 (403)
...+|.-|..+|+|++|.+|.|.|..+-.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 35789999999999999999999998853
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.88 E-value=0.0031 Score=46.43 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.9
Q ss_pred CCcccchhhhcCCCCCCCCCCCCCCCCCcc
Q 015670 229 PGQQECQYYMKTGDCKFGSSCRFHHPRELI 258 (403)
Q Consensus 229 p~q~~Cryy~KtG~CkfG~~CkF~Hp~~~~ 258 (403)
....+|+-|.-.|.|++|.+|.+.|++|..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 467899999999999999999999988763
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.51 E-value=0.0023 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.836 Sum_probs=17.8
Q ss_pred cccchhhhcCCCCCCCCCCCCCCCCC
Q 015670 231 QQECQYYMKTGDCKFGSSCRFHHPRE 256 (403)
Q Consensus 231 q~~Cryy~KtG~CkfG~~CkF~Hp~~ 256 (403)
+..|+|+. .|+. ..|.|.|+..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS 30 (80)
Confidence 46799988 5988 8899999754
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.61 E-value=0.0061 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.794 Sum_probs=19.3
Q ss_pred CccccccccccCCCCCCCCCCCCcCCC
Q 015670 16 GQPVCQYYMRTGTCKYGASCKYHHPRQ 42 (403)
Q Consensus 16 g~~~CryylrtG~Ck~G~~CkF~H~~~ 42 (403)
..+.|+||.. |+. ..|.|.|+..
T Consensus 8 ~~e~CKf~~~---Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 8 SLEQCKFGTH---CTN-KRCKYRHARS 30 (80)
Confidence 3578999987 999 9999999764
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.32 E-value=0.024 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=24.4
Q ss_pred CCccccccccccCCCCCCCCCCCCcCCCC
Q 015670 15 VGQPVCQYYMRTGTCKYGASCKYHHPRQG 43 (403)
Q Consensus 15 ~g~~~CryylrtG~Ck~G~~CkF~H~~~~ 43 (403)
....+|-||.+ |.|++|+.|.|.|.+..
T Consensus 68 ~~~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 68 GQLFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp TCCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CCCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 34579999999 99999999999997654
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.64 E-value=0.028 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=24.1
Q ss_pred CcccccccCccCCCCCCCccCCCCCCCC
Q 015670 63 EKECSYYMKTRQCKFGATCKFHHPQPAG 90 (403)
Q Consensus 63 e~~C~~flktG~CkfG~~CrF~H~~~~~ 90 (403)
...|.||.| |.|+.|+.|.|.|..+..
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 458999999 999999999999998753
No 27
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=77.96 E-value=1.3 Score=36.18 Aligned_cols=52 Identities=25% Similarity=0.608 Sum_probs=15.1
Q ss_pred CCCCCCCCC---------CCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 015670 242 DCKFGSSCR---------FHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSY 306 (403)
Q Consensus 242 ~CkfG~~Ck---------F~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF~Hp~~~~~y 306 (403)
.|+||.+|. |+||.+......+... ... ....-.|+||.+|--..+.....|
T Consensus 16 ~C~yG~~CYRkNp~H~~~fsHP~d~dY~Dp~~~~-----------~~~--~~~~p~C~YG~~CYRkNp~H~~ey 76 (89)
T 2kqb_A 16 SCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVG-----------QDE--TDDRPECPYGPSCYRKNPQHKIEY 76 (89)
T ss_dssp ECTTTTCCCCCCTTHHHHEECTTSTTCCCCCCSS-----------TTT--CCC---------------------
T ss_pred CCCCCcccccCChHHHhhccCCCcccccCccccc-----------ccC--CCCCCCCCCchhhhcCCHHHHHhc
Confidence 477777784 8898776432221110 001 123466999999965555544444
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=77.83 E-value=0.45 Score=44.88 Aligned_cols=25 Identities=40% Similarity=0.978 Sum_probs=0.0
Q ss_pred CcccchhhhcCCCCCCCCCCCCCCCCCc
Q 015670 230 GQQECQYYMKTGDCKFGSSCRFHHPREL 257 (403)
Q Consensus 230 ~q~~Cryy~KtG~CkfG~~CkF~Hp~~~ 257 (403)
....|.|=. .|.||.+|||.||...
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 357899944 6999999999998543
No 29
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=69.57 E-value=0.95 Score=42.67 Aligned_cols=24 Identities=33% Similarity=0.762 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCCCCCCCC
Q 015670 277 AAPCTHYVQRGVCKFGPACKFDHPMGM 303 (403)
Q Consensus 277 ~~~C~~Y~~~G~CkfG~~CkF~Hp~~~ 303 (403)
.+.|+|= ..|.||.+|||.||...
T Consensus 192 ~~~~~~~---~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYG---RKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCC---cccccCCcceecCCccC
Confidence 5679986 36999999999999854
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=67.01 E-value=1.2 Score=36.47 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=8.9
Q ss_pred ccccCCCCCCC
Q 015670 286 RGVCKFGPACK 296 (403)
Q Consensus 286 ~G~CkfG~~Ck 296 (403)
.-.|+||.+|-
T Consensus 61 ~p~C~YG~~CY 71 (91)
T 2kuo_A 61 RPECPYGPSCY 71 (91)
T ss_dssp SCBCTTGGGCC
T ss_pred CCCCCCchhhh
Confidence 45699999994
Done!