BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015671
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 34/125 (27%)
Query: 207 ILNLRGSKSLK-------SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGN--ISWLFLT 257
I NL+ KSLK +L I +L L +LDL GC+ L+ P I G + L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 258 GTA-IKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXXGVLNLYGCSNLQRLPECL 316
+ + LP I L +LE LDL GC NL RLP +
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDL------------------------RGCVNLSRLPSLI 297
Query: 317 GQLSS 321
QL +
Sbjct: 298 AQLPA 302
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 35/161 (21%)
Query: 216 LKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI-----SSG------NISWLFLTGTAIKEL 264
L++LP+ I +L L +L + C +L LPE +SG N+ L L T I+ L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 265 PSSIESLL-----------------------RLEYLDLSDCXXXXXXXXXXXXXXXXGVL 301
P+SI +L +LE LDL C L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 302 NLYGCSNLQRLPECLGQLSSPITLGLTE-TNIERIPESIIQ 341
L CSNL LP + +L+ L L N+ R+P I Q
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 136 LHWHGYPLKSFPSNLSA-EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTP 194
L W G ++S P++++ + L ++ + + L + H KL ++ C L P
Sbjct: 190 LEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 195 NPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246
L +++ L+ +L +LP +I L L KLDL GC L RLP +
Sbjct: 248 IFGGRAPLKRLI---LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 212 GSKSLKSLPSEIFN-LEFLTKLDLSGCSKLKRLPEISSG---NISWLFLTGTAIKELPSS 267
GS L +LP +F+ L LT LDL G ++L LP ++ LF+ + ELP
Sbjct: 72 GSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 268 IESLLRLEYLDL 279
IE L L +L L
Sbjct: 131 IERLTHLTHLAL 142
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 93 LNPSTFTKMPKLRFLKFYSSSFNG-ENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLS 151
+NP F +P L++L ++ + K+ LQ ++ H SF LS
Sbjct: 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LS 153
Query: 152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR 211
E ++L+ + +N I+++ +C + ++L+++ + + L + PN + VIL++
Sbjct: 154 FESVILW-LNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGA-SGPVILDIS 210
Query: 212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246
++ + SLPS + LE L KL LK+LP +
Sbjct: 211 RTR-IHSLPS--YGLENLKKLRARSTYNLKKLPTL 242
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLP-EISS-GNISWLFLTGTAIKELPSSIESLLRLE 275
++ + IF +FLT+L L+G S L LP EI + N+ L L+ + LP+ + S +L+
Sbjct: 238 NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 276 YLDLSD 281
Y D
Sbjct: 297 YFYFFD 302
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EISSG-NISWLFLTGTAIKELP 265
L L G+ SL LP+EI NL L LDLS ++L LP E+ S + + + + LP
Sbjct: 252 LYLNGN-SLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309
Query: 266 SSIESLLRLEYL 277
+L L++L
Sbjct: 310 WEFGNLCNLQFL 321
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 114 FNGENKCKMSYLQDPGFAEVKYLHWHGYPL-------KSFPSNLSAEKLVLFEVPENDIE 166
F G+ K+ L E +HWHG P+ P E++ FE+P++
Sbjct: 87 FEGD---KLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAG 143
Query: 167 QLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTL 198
W HY+ Q+ + + K L
Sbjct: 144 TYWYHPHPHYTASKQVFMGLAGAFVIKAKKDAL 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,332,649
Number of Sequences: 62578
Number of extensions: 429475
Number of successful extensions: 1048
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 28
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)