Query 015671
Match_columns 403
No_of_seqs 237 out of 3456
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.8E-38 1.7E-42 330.5 31.8 366 3-374 460-908 (1153)
2 PLN00113 leucine-rich repeat r 99.9 2.6E-26 5.6E-31 242.4 20.6 273 77-361 70-350 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.6E-25 5.7E-30 234.7 18.4 258 95-361 157-422 (968)
4 KOG0444 Cytoskeletal regulator 99.9 2.8E-25 6.1E-30 206.4 -2.0 277 73-362 75-381 (1255)
5 KOG4194 Membrane glycoprotein 99.9 7.6E-24 1.6E-28 195.5 1.9 265 89-361 136-434 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.9 2.6E-22 5.6E-27 203.2 6.6 359 10-378 455-866 (889)
7 KOG4194 Membrane glycoprotein 99.9 2.5E-22 5.4E-27 185.5 5.4 270 82-361 82-383 (873)
8 KOG0444 Cytoskeletal regulator 99.8 6.2E-24 1.3E-28 197.6 -7.9 179 95-284 48-257 (1255)
9 PLN03210 Resistant to P. syrin 99.8 2.2E-18 4.7E-23 183.2 20.1 221 131-360 634-910 (1153)
10 KOG0472 Leucine-rich repeat pr 99.7 2.1E-20 4.6E-25 165.7 -6.0 223 131-356 252-541 (565)
11 PRK15387 E3 ubiquitin-protein 99.7 2.5E-16 5.3E-21 156.9 15.7 223 102-361 222-463 (788)
12 PRK15370 E3 ubiquitin-protein 99.7 1.6E-16 3.4E-21 159.1 12.8 226 102-356 199-428 (754)
13 KOG0618 Serine/threonine phosp 99.7 1.5E-19 3.3E-24 175.4 -8.4 65 297-362 360-425 (1081)
14 KOG0472 Leucine-rich repeat pr 99.7 3.2E-20 7E-25 164.6 -12.1 202 123-333 105-310 (565)
15 PRK15370 E3 ubiquitin-protein 99.7 1.4E-16 3E-21 159.5 10.9 228 102-361 178-405 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 1E-14 2.2E-19 145.5 17.0 222 102-361 201-439 (788)
17 KOG0618 Serine/threonine phosp 99.6 1.8E-17 4E-22 161.2 -5.4 217 131-356 241-465 (1081)
18 KOG0617 Ras suppressor protein 99.6 4.6E-17 9.9E-22 128.6 -4.3 167 144-317 24-193 (264)
19 cd00116 LRR_RI Leucine-rich re 99.5 2.9E-15 6.3E-20 138.5 -0.8 257 96-354 17-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.5 6E-15 1.3E-19 136.4 -0.9 223 131-356 23-291 (319)
21 KOG0617 Ras suppressor protein 99.4 1.9E-15 4.1E-20 119.5 -4.8 159 174-361 31-190 (264)
22 KOG4237 Extracellular matrix p 99.4 2.8E-15 6E-20 133.3 -6.0 260 85-354 74-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3E-12 6.4E-17 130.7 5.1 224 100-333 543-783 (889)
24 KOG4237 Extracellular matrix p 99.3 8.3E-14 1.8E-18 124.0 -6.0 249 103-362 68-341 (498)
25 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.4E-15 109.4 6.3 172 152-333 115-290 (394)
26 KOG0532 Leucine-rich repeat (L 99.0 9.5E-12 2.1E-16 115.9 -3.3 193 152-354 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.0 5.6E-10 1.2E-14 106.4 7.6 175 131-313 116-294 (394)
28 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 94.9 3.1 128 99-236 16-149 (175)
29 KOG3207 Beta-tubulin folding c 99.0 6.2E-11 1.3E-15 107.3 -0.2 222 151-374 119-358 (505)
30 KOG1909 Ran GTPase-activating 99.0 3.5E-11 7.6E-16 105.9 -2.9 241 98-355 26-310 (382)
31 KOG1259 Nischarin, modulator o 99.0 2.4E-10 5.3E-15 98.8 2.2 128 224-356 281-412 (490)
32 KOG3207 Beta-tubulin folding c 98.9 8.9E-11 1.9E-15 106.3 -1.2 201 131-333 121-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.5E-14 90.1 4.6 133 143-304 9-148 (175)
34 PLN03150 hypothetical protein; 98.9 6.3E-09 1.4E-13 104.1 9.1 111 251-361 420-533 (623)
35 KOG0532 Leucine-rich repeat (L 98.8 6.7E-11 1.4E-15 110.4 -5.6 151 98-283 94-245 (722)
36 KOG1259 Nischarin, modulator o 98.8 2.3E-09 5E-14 92.8 1.6 131 203-337 284-416 (490)
37 KOG1909 Ran GTPase-activating 98.7 1.8E-09 3.8E-14 95.4 -0.7 204 151-356 28-283 (382)
38 PLN03150 hypothetical protein; 98.6 7.1E-08 1.5E-12 96.7 7.0 90 273-362 419-509 (623)
39 KOG0531 Protein phosphatase 1, 98.6 8.6E-09 1.9E-13 98.6 -0.9 125 100-238 70-197 (414)
40 PF13855 LRR_8: Leucine rich r 98.5 9.7E-08 2.1E-12 64.6 3.8 56 298-353 3-59 (61)
41 KOG2120 SCF ubiquitin ligase, 98.5 2E-09 4.4E-14 93.0 -6.1 175 153-330 185-373 (419)
42 KOG0531 Protein phosphatase 1, 98.5 1.5E-08 3.3E-13 96.9 -1.9 194 131-335 72-270 (414)
43 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.2E-12 62.2 3.9 61 272-332 1-61 (61)
44 KOG2120 SCF ubiquitin ligase, 98.4 3.6E-09 7.8E-14 91.5 -8.1 176 176-353 185-373 (419)
45 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.2E-12 81.7 1.2 221 135-377 49-286 (418)
46 PRK15386 type III secretion pr 98.1 2.4E-05 5.1E-10 72.8 9.4 139 172-331 48-188 (426)
47 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 73.5 8.5 155 200-374 49-215 (426)
48 KOG4341 F-box protein containi 98.0 1.5E-07 3.2E-12 85.4 -5.7 273 96-374 158-456 (483)
49 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.5E-11 88.0 -0.7 104 131-239 122-232 (699)
50 KOG1859 Leucine-rich repeat pr 98.0 7.8E-08 1.7E-12 92.8 -9.0 102 249-355 187-291 (1096)
51 KOG1859 Leucine-rich repeat pr 97.9 1.4E-06 3.1E-11 84.3 -1.9 173 174-356 82-267 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 49.3 2.9 33 154-186 2-34 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.5E-10 69.3 2.7 201 152-354 29-283 (388)
54 KOG1644 U2-associated snRNP A' 97.8 3.8E-05 8.3E-10 63.4 5.5 105 131-237 42-150 (233)
55 KOG2982 Uncharacterized conser 97.8 5E-06 1.1E-10 72.4 0.2 196 100-302 69-285 (418)
56 KOG4341 F-box protein containi 97.8 3.9E-07 8.5E-12 82.7 -7.0 104 269-374 317-430 (483)
57 PF12799 LRR_4: Leucine Rich r 97.8 3.6E-05 7.8E-10 47.7 3.7 34 321-354 2-35 (44)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 80.0 1.6 112 249-361 173-293 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.4 6.1E-05 1.3E-09 65.0 1.3 185 168-355 22-254 (388)
60 KOG1644 U2-associated snRNP A' 97.3 0.00051 1.1E-08 56.9 5.8 13 293-305 137-149 (233)
61 KOG4579 Leucine-rich repeat (L 97.2 3.8E-05 8.3E-10 59.4 -2.0 87 250-338 54-141 (177)
62 KOG4579 Leucine-rich repeat (L 97.2 3.7E-05 7.9E-10 59.5 -2.3 107 252-361 30-140 (177)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00039 8.4E-09 59.9 1.0 104 131-236 43-152 (260)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.8E-08 56.8 2.1 82 270-352 63-152 (260)
65 KOG2123 Uncharacterized conser 96.4 7.8E-05 1.7E-09 64.6 -6.4 56 131-186 41-98 (388)
66 KOG1947 Leucine rich repeat pr 96.0 0.00056 1.2E-08 66.9 -3.7 29 317-345 359-389 (482)
67 KOG1947 Leucine rich repeat pr 95.8 0.00088 1.9E-08 65.5 -3.0 16 292-307 358-373 (482)
68 KOG2123 Uncharacterized conser 95.5 0.00067 1.5E-08 59.0 -4.5 77 225-302 39-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.2 0.012 2.6E-07 30.3 1.3 18 155-172 2-19 (22)
70 PF13306 LRR_5: Leucine rich r 94.9 0.17 3.6E-06 39.4 7.9 38 198-236 7-44 (129)
71 PF13306 LRR_5: Leucine rich r 94.9 0.17 3.8E-06 39.4 8.0 104 94-212 4-112 (129)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3E-07 30.0 0.6 16 322-337 2-17 (22)
73 PF13504 LRR_7: Leucine rich r 94.5 0.027 5.8E-07 26.9 1.4 10 345-354 3-12 (17)
74 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.8E-07 26.4 1.3 13 133-145 3-15 (17)
75 KOG3864 Uncharacterized conser 92.7 0.02 4.2E-07 47.7 -1.3 80 274-353 103-186 (221)
76 KOG3864 Uncharacterized conser 89.6 0.073 1.6E-06 44.5 -0.9 76 37-114 59-137 (221)
77 smart00370 LRR Leucine-rich re 88.6 0.45 9.7E-06 25.3 2.1 19 320-338 2-20 (26)
78 smart00369 LRR_TYP Leucine-ric 88.6 0.45 9.7E-06 25.3 2.1 19 320-338 2-20 (26)
79 smart00364 LRR_BAC Leucine-ric 77.9 1.5 3.3E-05 23.4 1.3 17 321-337 3-19 (26)
80 smart00367 LRR_CC Leucine-rich 77.7 2 4.3E-05 22.8 1.8 15 342-356 1-15 (26)
81 KOG4308 LRR-containing protein 76.9 0.03 6.5E-07 54.3 -9.6 184 155-355 89-302 (478)
82 KOG0473 Leucine-rich repeat pr 72.1 0.11 2.4E-06 44.4 -6.2 82 98-186 38-121 (326)
83 KOG0473 Leucine-rich repeat pr 70.3 0.066 1.4E-06 45.7 -7.8 86 268-355 38-123 (326)
84 KOG4308 LRR-containing protein 66.4 0.064 1.4E-06 52.0 -10.0 112 263-374 163-294 (478)
85 smart00365 LRR_SD22 Leucine-ri 64.9 5.3 0.00012 21.4 1.5 15 153-167 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 64.5 3.5 7.6E-05 21.2 0.8 13 321-333 3-15 (24)
87 KOG4242 Predicted myosin-I-bin 63.5 15 0.00032 35.3 5.1 65 100-166 163-227 (553)
88 smart00368 LRR_RI Leucine rich 50.7 14 0.0003 20.0 1.7 14 320-333 2-15 (28)
89 KOG3763 mRNA export factor TAP 39.6 12 0.00026 36.6 0.5 83 294-376 216-307 (585)
90 KOG3763 mRNA export factor TAP 38.0 10 0.00022 37.0 -0.1 61 101-166 217-283 (585)
91 PF07725 LRR_3: Leucine Rich R 30.4 42 0.00091 16.7 1.4 17 155-171 2-18 (20)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.8e-38 Score=330.52 Aligned_cols=366 Identities=36% Similarity=0.543 Sum_probs=288.5
Q ss_pred cccccCCCcccchHhhhcCccEEEccCCeEEccHHHHHHHHHHHhhhcCCCCCccccCChhHHHHHHhhCcCCCceeEEE
Q 015671 3 FHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGIC 82 (403)
Q Consensus 3 ~~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~mHdll~dla~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (403)
++++.+++++.++++|+++||+++. .++|+|||++||||+++++++...|+.+.++|...++..++..+++...++++.
T Consensus 460 ~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 460 LLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred HHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 3556788899999999999999987 689999999999999999999878999999999999999999999999999999
Q ss_pred ecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCCCCCCCCceEEEc
Q 015671 83 LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEV 160 (403)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l 160 (403)
++.....+..+...+|.+|++|+.|.++.+.+.........+|..+.. .+||.|.+.+++++.+|..+.+.+|++|++
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L 618 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQM 618 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEEC
Confidence 999999999999999999999999999876543222223456677666 679999999999999999998999999999
Q ss_pred cCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCC
Q 015671 161 PENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL 240 (403)
Q Consensus 161 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (403)
.++.+..+|..+..+++|+.|+++++..+. .+|. +..+++|+.|++.+|.....+|..++.+++|+.|++++|..+
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcC-cCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 999999999888999999999999886665 6664 556777888888887777777777777777777777777666
Q ss_pred CCCccccc----------------------CCCcEEEecCccCcccChhh------------------------------
Q 015671 241 KRLPEISS----------------------GNISWLFLTGTAIKELPSSI------------------------------ 268 (403)
Q Consensus 241 ~~~~~~~~----------------------~~L~~L~l~~~~~~~l~~~~------------------------------ 268 (403)
+.+|.... .+|++|+++++.++.+|..+
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 65554322 34555555555555554321
Q ss_pred hCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCC---------------------CCCCEEEc
Q 015671 269 ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL---------------------SSPITLGL 327 (403)
Q Consensus 269 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------~~L~~L~l 327 (403)
..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++ ++|+.|++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence 012356666666666666677777777777777777776655555432 22 45667777
Q ss_pred cCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC--------eEeccCCCCCCC
Q 015671 328 TETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP--------LFLARGCLAMQP 374 (403)
Q Consensus 328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~--------~l~i~~c~~l~~ 374 (403)
++|.++.+|.++..+++|+.|++++|+.++.+|.. .+++.+|++|+.
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 77777888888999999999999999999998873 678889998875
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.6e-26 Score=242.39 Aligned_cols=273 Identities=21% Similarity=0.240 Sum_probs=165.2
Q ss_pred ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCC-CCCCCCCC
Q 015671 77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKS-FPSNLSAE 153 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~-lp~~~~l~ 153 (403)
.+..+.+. ........+..|..+++|++|++++|.+.|. +|..+. . .+|++|++++|.+.. +|. ..++
T Consensus 70 ~v~~L~L~--~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~------ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~ 140 (968)
T PLN00113 70 RVVSIDLS--GKNISGKISSAIFRLPYIQTINLSNNQLSGP------IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIP 140 (968)
T ss_pred cEEEEEec--CCCccccCChHHhCCCCCCEEECCCCccCCc------CChHHhccCCCCCEEECcCCccccccCc-cccC
Confidence 44444443 3322233466788899999999999887643 344433 3 777777777777653 332 2466
Q ss_pred CceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671 154 KLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL 232 (403)
Q Consensus 154 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (403)
+|++|++++|.+. .+|..++.+++|++|++++|.... .+|. .+.++++|++|++++|.+.+.+|..++.+++|+.|
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 7777777777665 356666777777777777763222 3332 45666666777776666666666666666666666
Q ss_pred eecCCCCCCCCccccc--CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 233 DLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 233 ~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
++++|...+..|..+. ++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 6666655555554443 66666666666554 45555666666666666666655555555555666666666666555
Q ss_pred cccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 310 QRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 555555555566666666665555 4455555555555555555555544443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.6e-25 Score=234.72 Aligned_cols=258 Identities=24% Similarity=0.295 Sum_probs=141.9
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCcc-cccc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWD 170 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~ 170 (403)
+..|+.+++||+|++++|.+.+ ..|..+.. ++|++|++++|.+. .+|..+ ++++|++|++++|.+. .+|.
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVG------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ChHHhcCCCCCEEECccCcccc------cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 4455666666666666665432 23334444 56666666666543 345444 4666666666666655 3455
Q ss_pred ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--
Q 015671 171 CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-- 248 (403)
Q Consensus 171 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 248 (403)
.++.+++|++|++++|.. .+.+| ..++++++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|....
T Consensus 231 ~l~~l~~L~~L~L~~n~l-~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNL-TGPIP--SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hHhcCCCCCEEECcCcee-ccccC--hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 566666666666666522 21333 2455556666666666655555555555666666666666555444444333
Q ss_pred CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 249 GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 249 ~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|.++..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 55666666655554 44455555666666666666555555555555556666666555555555555544555555555
Q ss_pred cCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 328 TETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 328 ~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
++|.+. .+|..+..+++|+.|++++|...+.+|.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 555444 4444455555555555555554444443
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.8e-25 Score=206.43 Aligned_cols=277 Identities=20% Similarity=0.296 Sum_probs=182.3
Q ss_pred cCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-
Q 015671 73 TGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL- 150 (403)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~- 150 (403)
.....++++.+...+++.-.+ |..+-++..|.+|+++.|.+ ...|..+.+ +++-+|+|++|+++++|...
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred ccchhhHHHhhhccccccCCC-Cchhcccccceeeecchhhh-------hhcchhhhhhcCcEEEEcccCccccCCchHH
Confidence 334444544443344444444 44566899999999999987 588999999 99999999999999999776
Q ss_pred -CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCC-CCccCccCCCCCC
Q 015671 151 -SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKS-LKSLPSEIFNLEF 228 (403)
Q Consensus 151 -~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~ 228 (403)
++..|-+|||+.|.+..+|+.+..+.+|+.|.+++|.... ..+..++.+++|+.|.+++..- ...+|.++..+.+
T Consensus 147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH---HHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 8999999999999999999999999999999999985321 1122344455555555554221 1234444545555
Q ss_pred CCEEeecCCCCCCCCccccc-------------------------CCCcEEEecCccCcccChhhhCCCCCCEEecccCc
Q 015671 229 LTKLDLSGCSKLKRLPEISS-------------------------GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCK 283 (403)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~-------------------------~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 283 (403)
|..++++.|+ +...|.... .+|+.|+++.|.++.+|..+.++++|+.|.+.+|+
T Consensus 224 L~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 224 LRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence 5555555422 223333222 45555555555555555555666666666555555
Q ss_pred CC-CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 284 RL-KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 284 ~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
+. .-+|++++++..|+++..++ +..+.+|+.++.|..|+.|.|+.|.+..+|..+.-++.|+.|++..|+.+-.-|.|
T Consensus 303 L~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 43 23566666666666666655 44566677777777777777777777777777777777777777777776666654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=7.6e-24 Score=195.45 Aligned_cols=265 Identities=20% Similarity=0.173 Sum_probs=161.9
Q ss_pred ceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcc
Q 015671 89 KEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIE 166 (403)
Q Consensus 89 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~ 166 (403)
....+..+.++.++.||+||++.|.+. ....+..-...++++|+|++|.++.+... | .+.+|.+|.|++|+++
T Consensus 136 ~I~sv~se~L~~l~alrslDLSrN~is-----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 136 LISSVTSEELSALPALRSLDLSRNLIS-----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred ccccccHHHHHhHhhhhhhhhhhchhh-----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 334455677888899999999998873 12222222228899999999999988543 4 6889999999999999
Q ss_pred cccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC------------------------CccCc
Q 015671 167 QLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL------------------------KSLPS 221 (403)
Q Consensus 167 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------------~~~~~ 221 (403)
.+|. .++++++|+.|++..|+. . +-....|..|++|+.|.+..|.+. ..-..
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~i-r--ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRI-R--IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccCHHHhhhcchhhhhhccccce-e--eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 9874 778899999999988732 1 111234555555555555555433 32333
Q ss_pred cCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCC
Q 015671 222 EIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSL 298 (403)
Q Consensus 222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 298 (403)
++.++++|+.|+++.|.....-+.... ..|++|+++.|.++.++ .++..+..|+.|.++.|.+...-...|..+++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 344444444444444433222222211 55555555555555444 233445555555555554332222234456677
Q ss_pred cEEeecCCCCCcccCc---ccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCC
Q 015671 299 GVLNLYGCSNLQRLPE---CLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 299 ~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
++|+|++|.+.+.+.+ .+.++++|+.|.+.+|++..+|. .+..++.|++|++.+|.+-..-|.
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 7777777666554432 35667777777777777776664 456777777777777765544444
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-22 Score=203.23 Aligned_cols=359 Identities=19% Similarity=0.239 Sum_probs=193.4
Q ss_pred CcccchHhhhcCccEEEcc----CCeEEccHHHHHHHHHHHhhhcC-------CCCCccc------cCCh-------hHH
Q 015671 10 YPEIGISVLVDKSLIVVGS----YNKIRMHDLLQELGREIVRQESI-------NPGNRSR------LWHH-------EDI 65 (403)
Q Consensus 10 ~~~~~~~~Lv~~sl~~~~~----~~~~~mHdll~dla~~~~~~e~~-------~~~~~~~------l~~~-------~~~ 65 (403)
.|+.|+++||++||++..+ ..+|+|||+|||||.++|++..+ ..+...+ .|.. ...
T Consensus 455 ~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~ 534 (889)
T KOG4658|consen 455 VGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNK 534 (889)
T ss_pred chHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccc
Confidence 6788999999999999874 26899999999999999994331 1100000 0000 000
Q ss_pred HHHHhhCcCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC
Q 015671 66 YEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK 144 (403)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~ 144 (403)
...+........++.+.+-...-........+|..||.||+||+++|. ....+|..+.. .+||||+++++.+.
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCcc
Confidence 111111111112333222111001223345557777777777777654 22466677776 77777777777777
Q ss_pred CCCCCC-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc
Q 015671 145 SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE 222 (403)
Q Consensus 145 ~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 222 (403)
.+|..+ +++.|.+|++..+... .++.....+++||+|.+....... .......+.++.+|+.+.+..... .+-..
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s~--~~~e~ 685 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISSV--LLLED 685 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecchh--HhHhh
Confidence 777777 6777777777766433 334455557777777776542111 111123344455555555433221 11111
Q ss_pred CCCCCCCCEE----eecCCCCCCCCccccc-CCCcEEEecCccCcccCh-hh-----hC-CCCCCEEecccCcCCCcCCc
Q 015671 223 IFNLEFLTKL----DLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPS-SI-----ES-LLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 223 ~~~l~~L~~L----~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~-----~~-l~~L~~L~l~~~~~~~~~~~ 290 (403)
+..++.|.++ .+.++........... .+|+.|.+.++.+.+... +. .. ++++..+.+..|..... +.
T Consensus 686 l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~ 764 (889)
T KOG4658|consen 686 LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LT 764 (889)
T ss_pred hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cc
Confidence 2233333322 2222222222222222 788888888776653221 11 11 33444444445443222 23
Q ss_pred cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc---------Ch---hhhcCCCCCEEeccCCcCCCc
Q 015671 291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI---------PE---SIIQHFVLRYLLLSYSERLQS 358 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l---------~~---~~~~~~~L~~L~l~~c~~l~~ 358 (403)
+..-.++|+.|.+.+|...+.+.+..+.+..++.+.+..+.+..+ |. .--.++.|+.+.+..|+.++.
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 333467888888888887777665555555554433333333211 11 011334588888999999999
Q ss_pred CCC-CeEeccCC-CCCCCchhh
Q 015671 359 LPS-PLFLARGC-LAMQPFLGI 378 (403)
Q Consensus 359 lp~-~~l~i~~c-~~l~~~~~~ 378 (403)
+|. ..+.|.+| +.+...|..
T Consensus 845 ~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 845 LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred CccccccceeccccceeecCCc
Confidence 999 68888887 666665554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-22 Score=185.54 Aligned_cols=270 Identities=17% Similarity=0.143 Sum_probs=151.6
Q ss_pred EecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEE
Q 015671 82 CLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL--SAEKLVLF 158 (403)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~--~l~~L~~L 158 (403)
.+++++.+.-++....|.++++|+.+.+..|.+. .+|....- -+|+.|+|..|-+.++.+.- .++.|+.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3566666666677888899999999999888763 45554444 55666666666666554332 35566666
Q ss_pred EccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCC
Q 015671 159 EVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGC 237 (403)
Q Consensus 159 ~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (403)
||+.|.++.++. .+..-.++++|++++|. ++ .+. ...|.++.+|..|.+++|.+...-+..|..+++|+.|++..|
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It-~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-IT-TLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-cc-ccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 666666666653 34444566666666651 11 111 234455555555666555533222233444555555555443
Q ss_pred C-----------------------CCCCCccccc---CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCc
Q 015671 238 S-----------------------KLKRLPEISS---GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 238 ~-----------------------~~~~~~~~~~---~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
. .+..+.+..+ ..+++|++..|.+..+. .++-.++.|+.|++++|.+...-+.
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 2 1222222111 66666667666666554 3446677777777777776666666
Q ss_pred cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCC
Q 015671 291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
.+.-.++|++|+|++|.+..--+..|..+..|++|.|+.|++..+.. .+..+++|++|+++.|.....+-+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 66667777777777776655444444444444444444444442221 223444555555555554444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=6.2e-24 Score=197.61 Aligned_cols=179 Identities=20% Similarity=0.322 Sum_probs=92.4
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC--CCCCCC-CCCCceEEEccCCCcccccc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK--SFPSNL-SAEKLVLFEVPENDIEQLWD 170 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~--~lp~~~-~l~~L~~L~l~~~~~~~l~~ 170 (403)
|+.++.+.+|..|.+.+|.+ .++...+.. +.||.+.+..|+++ .+|..+ .+..|..|||+.|++..+|.
T Consensus 48 PeEL~~lqkLEHLs~~HN~L-------~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQL-------ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhh-------HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 55555566666666665544 233344444 55555555555543 344444 55555555555555555555
Q ss_pred ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC-----------
Q 015671 171 CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK----------- 239 (403)
Q Consensus 171 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----------- 239 (403)
.+.+-+++-.|++++| ++. .||. ..+-+|+.|-.|++++|+ ...+|+.+..+..|++|.+++|+.
T Consensus 121 ~LE~AKn~iVLNLS~N-~Ie-tIPn-~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm 196 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYN-NIE-TIPN-SLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM 196 (1255)
T ss_pred hhhhhcCcEEEEcccC-ccc-cCCc-hHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence 5555555555555555 232 3443 233445555555555544 344555455555555555555431
Q ss_pred --------------CCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671 240 --------------LKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 240 --------------~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 284 (403)
+..+|.... .+|+.++++.|.+..+|..+-.+++|+.|++++|.+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 122333322 555556666666555555555555555555555553
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.2e-18 Score=183.20 Aligned_cols=221 Identities=28% Similarity=0.431 Sum_probs=136.0
Q ss_pred CCeeEEEecCCC-CCCCCCCCCCCCceEEEccCC-CccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671 131 AEVKYLHWHGYP-LKSFPSNLSAEKLVLFEVPEN-DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL 208 (403)
Q Consensus 131 ~~L~~L~l~~~~-~~~lp~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 208 (403)
++|++|+++++. +..+|....+++|++|++.+| .+..+|..++++++|+.|++++|..+. .+|. . .++++|+.|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~--~-i~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPT--G-INLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCC--c-CCCCCCCEE
Confidence 555555555433 444444334555555555554 234455555555555555555554444 4432 1 144555555
Q ss_pred EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc--------------------------------cCCCcEEEe
Q 015671 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--------------------------------SGNISWLFL 256 (403)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~L~~L~l 256 (403)
++++|.....+|.. .++|+.|+++++. +..+|... .++|+.|++
T Consensus 710 ~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 710 NLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred eCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 55555443333321 2334444444432 22222211 046777777
Q ss_pred cCcc-CcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc--------------------ccCcc
Q 015671 257 TGTA-IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ--------------------RLPEC 315 (403)
Q Consensus 257 ~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------~~~~~ 315 (403)
++|. +..+|.+++.+++|+.|++++|..++.+|..+ ++++|+.|++++|.... .+|.+
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 7653 45788888888899999998888777777654 56677777777664432 35666
Q ss_pred cCCCCCCCEEEccCC-CCcccChhhhcCCCCCEEeccCCcCCCcCC
Q 015671 316 LGQLSSPITLGLTET-NIERIPESIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 316 l~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
+..+++|+.|++++| .+..+|..+..++.|+.+++++|..+..++
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 778999999999996 677898888999999999999998876554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=2.1e-20 Score=165.74 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=130.0
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccc------------------
Q 015671 131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIA------------------ 191 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~------------------ 191 (403)
.++.+|++.+|.++++|..+ .+++|.+||+++|.++.+|..++++ +|++|.+.+|..-+.
T Consensus 252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred ccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 66777777777777777666 4666777777777777777777777 777777666641110
Q ss_pred cC----CC----------------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCC---CCEEeecCC-----------
Q 015671 192 KT----PN----------------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEF---LTKLDLSGC----------- 237 (403)
Q Consensus 192 ~~----~~----------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~----------- 237 (403)
.+ +. ......+.+.+.|++++- ....+|..+..-.. ....+++.|
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 00 00 000001122333333331 12233322211111 233333332
Q ss_pred ------------CCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEee
Q 015671 238 ------------SKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303 (403)
Q Consensus 238 ------------~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 303 (403)
+.++..|.... +.++.|++++|-+.++|..++.+..|+.|+++.|+ ...+|..+..+..++.+-.
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHh
Confidence 22222333322 66666666666666666666666666666666664 3445555444455555544
Q ss_pred cCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 304 YGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 304 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
++|.+...-++.+.++.+|..|++.+|.+..+|+.++++.+|++|.+.+|+..
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 44443333344588999999999999999999999999999999999999865
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=2.5e-16 Score=156.94 Aligned_cols=223 Identities=21% Similarity=0.186 Sum_probs=141.1
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
++|+.|++.+|.+. .+|.. .++|++|++++|.++.+|.. .++|+.|++..|.+..+|.. ..+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt-------~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLT-------SLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCC-------CCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEE
Confidence 36778888877763 23321 16778888888777777653 34666666666666655532 2344455
Q ss_pred ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC-------------------ccCccCCCCCCCCEEeecCCCCCCC
Q 015671 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK-------------------SLPSEIFNLEFLTKLDLSGCSKLKR 242 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~ 242 (403)
++++| .+. .+|. .+++|+.|++++|.+.. .+|. ...+|+.|++++|. +..
T Consensus 288 ~Ls~N-~Lt-~LP~-----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~-Ls~ 356 (788)
T PRK15387 288 WIFGN-QLT-SLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQ-LAS 356 (788)
T ss_pred ECcCC-ccc-cccc-----cccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEecCCCc-cCC
Confidence 55554 222 2221 12344555555544322 2332 11357777777643 334
Q ss_pred CcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCC
Q 015671 243 LPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSP 322 (403)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 322 (403)
+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. ..+|
T Consensus 357 LP~l-p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 357 LPTL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred CCCC-CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 5543 25667777777777766642 356888888888755 45543 357888999988765 46643 3568
Q ss_pred CEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 323 ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 323 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+.|++++|.++.+|..+..+++|+.|++++|+..+..|.
T Consensus 425 ~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 889999999999999999999999999999998766555
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.6e-16 Score=159.13 Aligned_cols=226 Identities=21% Similarity=0.280 Sum_probs=149.6
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
+.|+.|++++|.+. .+|..+. .+|++|++++|.++.+|..+ ..+|+.|++++|.+..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 46778888887763 3333222 57888888888877777644 2467888888888877776543 478888
Q ss_pred ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI 261 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (403)
++++| .+. .+|. .+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.. ..+|....++|+.|.+++|.+
T Consensus 268 ~Ls~N-~L~-~LP~--~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHN-KIS-CLPE--NLP--EELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSL-TALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred ECcCC-ccC-cccc--ccC--CCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcc-ccCCccccccceeccccCCcc
Confidence 88776 444 4443 222 46788888887643 455433 24677788877543 345554447788888888888
Q ss_pred cccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhh--
Q 015671 262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI-- 339 (403)
Q Consensus 262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-- 339 (403)
+.+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|.+. .+|+.+. .+|+.|++++|+++.+|..+
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence 87776553 67888888887754 466544 357888888887655 4554442 36788888888888766544
Q ss_pred --hcCCCCCEEeccCCcCC
Q 015671 340 --IQHFVLRYLLLSYSERL 356 (403)
Q Consensus 340 --~~~~~L~~L~l~~c~~l 356 (403)
..++.+..|++.+|+..
T Consensus 410 ~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcCCCccEEEeeCCCcc
Confidence 34477788888888753
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-19 Score=175.43 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=45.1
Q ss_pred CCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCCcCCCC
Q 015671 297 SLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 297 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
.|+.|++.+|.+....-+.+.++.+|+.|+|++|++..+|.. +.+++.|+.|+++||+ ++.+|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t 425 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT 425 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH
Confidence 345555555555555445667788888888888888888764 4777888888888874 5566653
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=3.2e-20 Score=164.58 Aligned_cols=202 Identities=27% Similarity=0.335 Sum_probs=92.2
Q ss_pred cccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCC
Q 015671 123 SYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP 200 (403)
Q Consensus 123 ~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (403)
.+|..+.. ..|+.|+++.+.+..+|..+ .+..|..++..+|++..+|+++.++.+|..+++.+|+ ++ ..|. ..-
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~-~l~~--~~i 180 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LK-ALPE--NHI 180 (565)
T ss_pred hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hh-hCCH--HHH
Confidence 34444444 44555555555544444444 3444444555555555555555555555555554441 11 1111 111
Q ss_pred CCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhh-CCCCCCEEe
Q 015671 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIE-SLLRLEYLD 278 (403)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~ 278 (403)
+++.|++++...| ..+.+|+.++.+.+|+.|++.. +.+..+|.+.+ ..|.+++++.|.++-+|+... +++++.+||
T Consensus 181 ~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 181 AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 2444455554442 2444555555555555555554 23334443333 444455555555554444432 445555555
Q ss_pred cccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 279 LSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 279 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+.+|+ .++.|..+.-+++|+.||+++|.+ ..+|..++++ .|+.|.+.||.+.
T Consensus 259 LRdNk-lke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 259 LRDNK-LKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ccccc-cccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchH
Confidence 55544 334444444445555555554332 2233344444 4555555555444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.4e-16 Score=159.49 Aligned_cols=228 Identities=21% Similarity=0.299 Sum_probs=176.1
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
.+...|+++++.+. .+|..+. .+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-------sLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-------TIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-------cCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence 46788999887763 4443322 679999999999999987653 589999999999999887553 589999
Q ss_pred ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI 261 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (403)
++++| .+. .+|. .+. .+|+.|++++|.+. .+|..+ .++|+.|++++|. ++.+|.....+|+.|++++|.+
T Consensus 247 ~Ls~N-~L~-~LP~--~l~--s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 247 ELSIN-RIT-ELPE--RLP--SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred ECcCC-ccC-cCCh--hHh--CCCCEEECcCCccC-cccccc--CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCcc
Confidence 99998 344 5543 232 57899999988754 677655 3589999999974 4556665557899999999999
Q ss_pred cccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhc
Q 015671 262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQ 341 (403)
Q Consensus 262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~ 341 (403)
+.+|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.++.+|..+.
T Consensus 317 t~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~- 387 (754)
T PRK15370 317 TALPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP- 387 (754)
T ss_pred ccCCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH-
Confidence 9888654 378999999999855 477655 379999999998765 466554 3689999999999999987664
Q ss_pred CCCCCEEeccCCcCCCcCCC
Q 015671 342 HFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 342 ~~~L~~L~l~~c~~l~~lp~ 361 (403)
+.|+.|++++|... .+|.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred -HHHHHHhhccCCcc-cCch
Confidence 47999999998654 6765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1e-14 Score=145.53 Aligned_cols=222 Identities=22% Similarity=0.175 Sum_probs=141.2
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
.+-..|+++.+.+. .+|..+. .+|+.|++.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-------sLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-------cCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---cccccee
Confidence 55678999998773 4555443 5899999999999999863 68999999999999999853 4689999
Q ss_pred ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI 261 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (403)
++++| .+. .+|. ...+|+.|++++|.+ ..+|. .+++|+.|++++|. +..+|... .+|+.|.+++|.+
T Consensus 268 ~Ls~N-~L~-~Lp~-----lp~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~-L~~Lp~lp-~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSN-PLT-HLPA-----LPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQ-LASLPALP-SELCKLWAYNNQL 334 (788)
T ss_pred eccCC-chh-hhhh-----chhhcCEEECcCCcc-ccccc---cccccceeECCCCc-cccCCCCc-ccccccccccCcc
Confidence 99998 344 4443 125688999999874 45665 35789999999974 44455422 4566666666666
Q ss_pred cccChhhhCCCCCCEEecccCcCCCcCCcccc-----------------CCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671 262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----------------KLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324 (403)
Q Consensus 262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 324 (403)
+.+|. ...+|+.|++++|.+. .+|.... ...+|+.|++++|.+.+ +|.. .++|+.
T Consensus 335 ~~LP~---lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~ 406 (788)
T PRK15387 335 TSLPT---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKE 406 (788)
T ss_pred ccccc---cccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCE
Confidence 66553 1245666666666543 2332110 01245555555544332 3322 245556
Q ss_pred EEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 325 L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
|++++|.++.+|.. ...|+.|++++|.. +.+|.
T Consensus 407 LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-t~LP~ 439 (788)
T PRK15387 407 LMVSGNRLTSLPML---PSGLLSLSVYRNQL-TRLPE 439 (788)
T ss_pred EEccCCcCCCCCcc---hhhhhhhhhccCcc-cccCh
Confidence 66666666555542 23455566665543 34554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=161.17 Aligned_cols=217 Identities=25% Similarity=0.332 Sum_probs=121.4
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671 131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN 209 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 209 (403)
.+|++++++.+.+..+|.++ .+.+|+.++...|.+..+|..+...++|+.|.+..| .+. .+|. ....++.|++|+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~-yip~--~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELE-YIPP--FLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhh-hCCC--cccccceeeeee
Confidence 44444444444444444333 344444444444444444444444444444444444 111 2221 222344445555
Q ss_pred ecCCCCCCccCccC-CCCC-CCCEEeecCCCCCCCCccccc---CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCc
Q 015671 210 LRGSKSLKSLPSEI-FNLE-FLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCK 283 (403)
Q Consensus 210 l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 283 (403)
+..|. ...+|..+ .-.. +|+.|..+. ..+...|.... ..|+.|++.+|.++ ..-+.+..+.+|+.|++++|.
T Consensus 317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred ehhcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 54443 22333211 1111 133333333 22333332222 56667777777776 222346677888888888887
Q ss_pred CCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 284 RLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 284 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
+ +.+|. .+.++..|+.|+|++|. ...+|+.+..+..|+.|...+|++..+| .+..++.|+.+|++.|...
T Consensus 395 L-~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 395 L-NSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred c-ccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 4 44444 56778888888888854 5567777888888888888888888888 6788888888888877543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.6e-17 Score=128.63 Aligned_cols=167 Identities=23% Similarity=0.307 Sum_probs=104.5
Q ss_pred CCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC
Q 015671 144 KSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI 223 (403)
Q Consensus 144 ~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 223 (403)
..+|..+.+.+++.|.++.|+++.+|+.+..+.+|+.|++.+| .+. ++|. .++++++|+.|++..|. ...+|..+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie-~lp~--~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIE-ELPT--SISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhh-hcCh--hhhhchhhhheecchhh-hhcCcccc
Confidence 3455555666666666666666666666666666666666665 222 3332 45556666666666554 44566666
Q ss_pred CCCCCCCEEeecCCCCCC-CCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcE
Q 015671 224 FNLEFLTKLDLSGCSKLK-RLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGV 300 (403)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 300 (403)
+.++-|+.|+++.|+.-. .+|..++ ..|+.|++++|.++-+|..++.+++|+.|.+.+|. +-.+|..++.+..|++
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHH
Confidence 666666666666654332 3344333 56666666677777888888888888888888877 3457777777777777
Q ss_pred EeecCCCCCcccCcccC
Q 015671 301 LNLYGCSNLQRLPECLG 317 (403)
Q Consensus 301 L~l~~~~~~~~~~~~l~ 317 (403)
|.+.+|.. ..+|+.++
T Consensus 178 lhiqgnrl-~vlppel~ 193 (264)
T KOG0617|consen 178 LHIQGNRL-TVLPPELA 193 (264)
T ss_pred Hhccccee-eecChhhh
Confidence 77777543 34444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=2.9e-15 Score=138.51 Aligned_cols=257 Identities=18% Similarity=0.133 Sum_probs=141.3
Q ss_pred hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-------CCC-CCCCceEEEccCCCcc
Q 015671 96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-------SNL-SAEKLVLFEVPENDIE 166 (403)
Q Consensus 96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-------~~~-~l~~L~~L~l~~~~~~ 166 (403)
..|..++.|+.|+++++.+.+. ....++..+.. +.|+.++++++.+...+ ..+ .+++|++|++++|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~--~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEE--AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHH--HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 4456667788888888876421 11233444444 67888888877655322 122 4668888888887775
Q ss_pred c-cccccccC---CCCcEeecccccCccccCCC-CCCCCCC-CCCcEEEecCCCCCC----ccCccCCCCCCCCEEeecC
Q 015671 167 Q-LWDCVKHY---SKLNQIIHAVCHRLIAKTPN-PTLMPRL-NKVVILNLRGSKSLK----SLPSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 167 ~-l~~~~~~l---~~L~~L~l~~~~~~~~~~~~-~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 236 (403)
. .+..+..+ ++|++|++++|.......+. ...+..+ ++|+.|++++|.+.. .++..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 3 23333333 34888888777321100000 1123444 677888888877653 2333455667788888877
Q ss_pred CCCCCCC-cccc---c--CCCcEEEecCccCc-----ccChhhhCCCCCCEEecccCcCCCcCCcccc-----CCCCCcE
Q 015671 237 CSKLKRL-PEIS---S--GNISWLFLTGTAIK-----ELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----KLKSLGV 300 (403)
Q Consensus 237 ~~~~~~~-~~~~---~--~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~ 300 (403)
|...... +... . ++|+.|++++|.++ .++..+..+++|+.|++++|.+.......+. ..+.|+.
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 6543211 1111 1 46677777666654 2233445566777777777664431111111 2356777
Q ss_pred EeecCCCCCc----ccCcccCCCCCCCEEEccCCCCcc-----cChhhhcC-CCCCEEeccCCc
Q 015671 301 LNLYGCSNLQ----RLPECLGQLSSPITLGLTETNIER-----IPESIIQH-FVLRYLLLSYSE 354 (403)
Q Consensus 301 L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~c~ 354 (403)
|++++|.+.. .+...+..+++|+.+++++|.++. +...+... +.|+.|++.+++
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 7777766541 233344455667777777776662 22233333 566677666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=6e-15 Score=136.38 Aligned_cols=223 Identities=21% Similarity=0.144 Sum_probs=141.7
Q ss_pred CCeeEEEecCCCCC-----CCCCCC-CCCCceEEEccCCCccc-------cccccccCCCCcEeecccccCccccCCCCC
Q 015671 131 AEVKYLHWHGYPLK-----SFPSNL-SAEKLVLFEVPENDIEQ-------LWDCVKHYSKLNQIIHAVCHRLIAKTPNPT 197 (403)
Q Consensus 131 ~~L~~L~l~~~~~~-----~lp~~~-~l~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 197 (403)
..|+.|+++++.++ .++... ..+.|++++++++.+.. ++..+..+++|+.|++++|.... ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~-- 99 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-DGCG-- 99 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-hHHH--
Confidence 56889999888863 233333 46678888888876652 23456678889999998874321 1111
Q ss_pred CCCCC---CCCcEEEecCCCCCC----ccCccCCCC-CCCCEEeecCCCCCCCCc----cccc--CCCcEEEecCccCc-
Q 015671 198 LMPRL---NKVVILNLRGSKSLK----SLPSEIFNL-EFLTKLDLSGCSKLKRLP----EISS--GNISWLFLTGTAIK- 262 (403)
Q Consensus 198 ~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~----~~~~--~~L~~L~l~~~~~~- 262 (403)
.+..+ ++|++|++++|.+.. .+...+..+ ++|+.|++++|....... .... .+|+.|++++|.++
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 11122 558889998887652 222334456 788888888877553211 1111 57888888888776
Q ss_pred ----ccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcccCcccC-----CCCCCCEEEccC
Q 015671 263 ----ELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQRLPECLG-----QLSSPITLGLTE 329 (403)
Q Consensus 263 ----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~ 329 (403)
.++..+...++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+.....+. ..+.|+.|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 2334455567888888888875432 333455677888888888776542221111 246788888888
Q ss_pred CCCc-----ccChhhhcCCCCCEEeccCCcCC
Q 015671 330 TNIE-----RIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 330 ~~l~-----~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
|.++ .+...+..++.|+.+++++|...
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 8875 34445566678888888887544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-15 Score=119.55 Aligned_cols=159 Identities=25% Similarity=0.357 Sum_probs=111.7
Q ss_pred cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE
Q 015671 174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 253 (403)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 253 (403)
.+.+...|.+++|+ ++ .+|. .+..+.+|+.|++++|. ...+|.+++.+++|+.|++
T Consensus 31 ~~s~ITrLtLSHNK-l~-~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv------------------- 86 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LT-VVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV------------------- 86 (264)
T ss_pred chhhhhhhhcccCc-ee-ecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec-------------------
Confidence 34444455555542 22 2221 34444455555555443 3444544555555555554
Q ss_pred EEecCccCcccChhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI 332 (403)
Q Consensus 254 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 332 (403)
+-|.+..+|..+++++.|+.|++.+|.+.. .+|..|..+..|+.|++++|. .+.+|..++.+++|+.|.+.+|.+
T Consensus 87 ---gmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 87 ---GMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred ---chhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch
Confidence 445666788899999999999999988654 577777788899999999854 466777889999999999999999
Q ss_pred cccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 333 ERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 333 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
-++|..++.+..|++|.|.+|+.. -+|.
T Consensus 163 l~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 999999999999999999998644 4554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=2.8e-15 Score=133.27 Aligned_cols=260 Identities=16% Similarity=0.101 Sum_probs=139.7
Q ss_pred CCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecC-CCCCCCCCCC--CCCCceEEEc
Q 015671 85 MSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLKSFPSNL--SAEKLVLFEV 160 (403)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~~lp~~~--~l~~L~~L~l 160 (403)
+.......+.+.+|+.+++||.|+|+.|.|. ..-|..+.. ..|-.|-+.+ |.++++|... ++..|+.|.+
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchh------hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3344445667888999999999999998874 334455555 5555555555 7788888665 6888888888
Q ss_pred cCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC------------ccCccCCCCC
Q 015671 161 PENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK------------SLPSEIFNLE 227 (403)
Q Consensus 161 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~ 227 (403)
.-|++.-++ +.+..+++|..|.+.+|.. . .++ -..+..+..++.+.+..|.+.. ..|.+++++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~-q-~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKI-Q-SIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhh-h-hhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 888887664 5788888888888888732 1 222 2356677777777776655221 1122222222
Q ss_pred CCCEEeecCCCCCCCCccccc-CCCcEE----EecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEE
Q 015671 228 FLTKLDLSGCSKLKRLPEISS-GNISWL----FLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVL 301 (403)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~-~~L~~L----~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 301 (403)
-..-..+... .+...+.-.+ .+++.+ .-.++-....| ..++.+++|++|++++|+++..-+.+|.....+++|
T Consensus 225 c~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 2221111110 0000000000 000000 00011111112 124555566666666665555555555555566666
Q ss_pred eecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCc
Q 015671 302 NLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 302 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~ 354 (403)
.|..|.+...-...|.++..|+.|+|.+|+|+ -.|..+..+.+|.+|++-.|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 66555543333334555555666666666655 334444555555555555443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3e-12 Score=130.66 Aligned_cols=224 Identities=24% Similarity=0.254 Sum_probs=147.0
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCC-CCC-CCeeEEEecCCC-CCCCCCCC-CCCCceEEEccCCCccccccccccC
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQD-PGF-AEVKYLHWHGYP-LKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHY 175 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~-~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 175 (403)
..++|++|-+..|.. .....+.. +.. +.|++|+|++|. +..+|..+ .+-+|++|+++++.+..+|..++++
T Consensus 543 ~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 346799999888751 01233332 344 999999999876 78999999 6999999999999999999999999
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC--CccCccCCCCCCCCEEeecCCCCCCCCccccc-----
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL--KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----- 248 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----- 248 (403)
.+|.+|++..+..+. .++ .....+++|++|.+...... ...-..+..+.+|+.+.+..... ........
T Consensus 618 k~L~~Lnl~~~~~l~-~~~--~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLE-SIP--GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred Hhhheeccccccccc-ccc--chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 999999999886554 332 24455899999998764311 11223345666666666654332 11111111
Q ss_pred CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcccc-----C-CCCCcEEeecCCCCCcccCcccCCCCCC
Q 015671 249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----K-LKSLGVLNLYGCSNLQRLPECLGQLSSP 322 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L 322 (403)
...+.+.+.++.....+..+..+.+|+.|.+.+|........+.. . ++++..+.+.+|.....+ .+.--.++|
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L 772 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHL 772 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcc
Confidence 222334434444456667788999999999999986543322211 1 334555555555544433 334457899
Q ss_pred CEEEccCCCCc
Q 015671 323 ITLGLTETNIE 333 (403)
Q Consensus 323 ~~L~l~~~~l~ 333 (403)
+.|.+..|...
T Consensus 773 ~~l~l~~~~~~ 783 (889)
T KOG4658|consen 773 TSLSLVSCRLL 783 (889)
T ss_pred cEEEEeccccc
Confidence 99999998755
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=8.3e-14 Score=123.99 Aligned_cols=249 Identities=17% Similarity=0.080 Sum_probs=159.0
Q ss_pred CCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccC-CCcccccc-ccccCC
Q 015671 103 KLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPE-NDIEQLWD-CVKHYS 176 (403)
Q Consensus 103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~-~~~~~l~~-~~~~l~ 176 (403)
.-..++|..|.| ..+|...+. .+||.|+|+.|.++.| |..| .++.|.+|-+-+ |+|+.+|. .++.+.
T Consensus 68 ~tveirLdqN~I-------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQI-------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccCCc-------ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 345677888877 355655444 8888888888888877 5555 577776665554 88888874 677788
Q ss_pred CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCC--c---------
Q 015671 177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRL--P--------- 244 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~--------- 244 (403)
.|+.|.+.-|+- . -++ ...+..+++|..|.+.+|.+ ..++ ..+..+..++++.+..|..+... |
T Consensus 141 slqrLllNan~i-~-Cir-~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 141 SLQRLLLNANHI-N-CIR-QDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHHHHhcChhhh-c-chh-HHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 888887766521 1 111 23566778888888888764 3344 36777888888887776533221 0
Q ss_pred -cccc--CCCcEEEecCccCcccChh-h-hCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCC
Q 015671 245 -EISS--GNISWLFLTGTAIKELPSS-I-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQ 318 (403)
Q Consensus 245 -~~~~--~~L~~L~l~~~~~~~l~~~-~-~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 318 (403)
..+. .-..-..+.+..+..+++. + ..+..+..--.+.|......|. .|..+++|++|++++|.+.+.-+.+|++
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 0000 0001111111222222211 1 1111111111122322333333 4788999999999999999888899999
Q ss_pred CCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 319 LSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 319 l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
+..+++|.|..|++..+.. .+..+..|+.|++.+|+++.-.|..
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 9999999999999996654 4678899999999999988777764
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2e-10 Score=109.35 Aligned_cols=172 Identities=27% Similarity=0.328 Sum_probs=69.4
Q ss_pred CCCceEEEccCCCccccccccccCC-CCcEeecccccCccccCCCC-CCCCCCCCCcEEEecCCCCCCccCccCCCCCCC
Q 015671 152 AEKLVLFEVPENDIEQLWDCVKHYS-KLNQIIHAVCHRLIAKTPNP-TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL 229 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (403)
...+..|++.++.+..++.....+. +|+.|+++++ .+..+ ..+..+++|+.|++++|. ...+|...+..+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-----~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-----KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhccccccccc-----chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 3445555555555555544444442 4555555544 22211 233444444444444443 22333322233444
Q ss_pred CEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671 230 TKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 307 (403)
+.|++++| .+..+|.... ..|+++.+++|.+...+..+..+.++..+.+.++.. ..++..++.+++++.|++++|.
T Consensus 189 ~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 189 NNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccc
Confidence 44444442 1222222211 223333333333333333444444444444444332 2223334444445555555433
Q ss_pred CCcccCcccCCCCCCCEEEccCCCCc
Q 015671 308 NLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 308 ~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+...-+ ++.+.+++.|+++++.+.
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccc--ccccCccCEEeccCcccc
Confidence 322211 444445555555554444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=9.5e-12 Score=115.94 Aligned_cols=193 Identities=23% Similarity=0.349 Sum_probs=127.3
Q ss_pred CCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671 152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK 231 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (403)
+.--...|++.|.+..+|..+..+..|..+.+..|..- .+|. .+.++..|++++++.|. ...+|..++.++ |+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~--~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPE--AICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--ecch--hhhhhhHHHHhhhccch-hhcCChhhhcCc-cee
Confidence 33344566777777777777777777777777665321 2332 55666677777777755 455666565543 677
Q ss_pred EeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 232 LDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 232 L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
|.+++ ++++.+|...+ ..|..|+.+.|.+..+|..++.+.+|+.|.+..|. ...+|..+..+ .|..||++. +.+
T Consensus 148 li~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfSc-Nki 223 (722)
T KOG0532|consen 148 LIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSC-NKI 223 (722)
T ss_pred EEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeeccc-Cce
Confidence 77766 44555555554 66666777777777788888888888888888776 44566666644 477788875 455
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccChhh---hcCCCCCEEeccCCc
Q 015671 310 QRLPECLGQLSSPITLGLTETNIERIPESI---IQHFVLRYLLLSYSE 354 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~---~~~~~L~~L~l~~c~ 354 (403)
..+|..|..+..|++|-|.+|.+.+-|..+ +...-.++|++.-|+
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 667778888888888888888888666554 333345677777773
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5.6e-10 Score=106.38 Aligned_cols=175 Identities=30% Similarity=0.395 Sum_probs=128.4
Q ss_pred CCeeEEEecCCCCCCCCCCCC-CC-CceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCC-CCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPSNLS-AE-KLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP-RLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~-l~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~ 207 (403)
..+..|++.++.+.++|.... +. +|++|++++|.+..+|..++.+++|+.|++++| .+..+.... .++.|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-----~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-----DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-----hhhhhhhhhhhhhhhhh
Confidence 678888888888888887774 43 888888888888888878888888888888888 333322333 6788888
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK 286 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 286 (403)
|++++|. ...+|........|++|.+++|........... ..+..+.+.++.+..++..++.++.++.|++++|.+.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-
Confidence 8888876 556666554566688888888754444333333 6777777778877777777888888999998887744
Q ss_pred cCCccccCCCCCcEEeecCCCCCcccC
Q 015671 287 SLPSSLCKLKSLGVLNLYGCSNLQRLP 313 (403)
Q Consensus 287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~ 313 (403)
.++. ++.+.+++.|+++++.+....+
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc-ccccCccCEEeccCccccccch
Confidence 3444 7778888999988877665544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.8e-10 Score=94.93 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred cCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccccc-ccC
Q 015671 99 TKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCV-KHY 175 (403)
Q Consensus 99 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~-~~l 175 (403)
.+..++|.|++.+|.|. ....+. . .+|+.|++++|.++.++....+++|++|++++|.++.+.+.+ ..+
T Consensus 16 ~n~~~~~~L~L~~n~I~--------~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS--------TIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccc--------cccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC
Confidence 34557899999998863 233444 2 789999999999998887668899999999999999886554 468
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCcc---CccCCCCCCCCEEeecC
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSL---PSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~ 236 (403)
++|++|++++| .+. .+..+..+..+++|+.|++.+|.+...- ...+..+|+|+.||-..
T Consensus 88 p~L~~L~L~~N-~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNN-KIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS-----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCC-cCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999999988 333 4444555667788888888887654321 12234677888887654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.2e-11 Score=107.26 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=140.0
Q ss_pred CCCCceEEEccCCCccccc--cccccCCCCcEeecccccCccccC-CCCCCCCCCCCCcEEEecCCCCCCccCccC-CCC
Q 015671 151 SAEKLVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVCHRLIAKT-PNPTLMPRLNKVVILNLRGSKSLKSLPSEI-FNL 226 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l 226 (403)
++++|+.+.|.++.+...+ .....|++++.|+++.| .++ .+ +....+..|++|+.|+++.|.+.....+.. ..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5778888888888887665 36778899999999887 232 22 222345567888888888887654333221 256
Q ss_pred CCCCEEeecCCCCCCCCccc---ccCCCcEEEecCcc-CcccChhhhCCCCCCEEecccCcCCCcC-CccccCCCCCcEE
Q 015671 227 EFLTKLDLSGCSKLKRLPEI---SSGNISWLFLTGTA-IKELPSSIESLLRLEYLDLSDCKRLKSL-PSSLCKLKSLGVL 301 (403)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 301 (403)
++|+.|.++.|.....--.. .+|+++.|++..|. +..-.....-+..|+.|+|++|.+...- -...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 78888888887654221111 11788888888773 3222223344567888888887754321 1345678888888
Q ss_pred eecCCCCCcc-cCcc-----cCCCCCCCEEEccCCCCcccCh--hhhcCCCCCEEeccCCcCCCcCCC-CeEeccCCCCC
Q 015671 302 NLYGCSNLQR-LPEC-----LGQLSSPITLGLTETNIERIPE--SIIQHFVLRYLLLSYSERLQSLPS-PLFLARGCLAM 372 (403)
Q Consensus 302 ~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~-~~l~i~~c~~l 372 (403)
.++.|.+... .|+. ...+++|++|++..|++..++. .+..+++|+.|.+-.|...+.--. -.+.|..-+++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l 356 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQL 356 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhh
Confidence 8888766542 3333 3457888888888888875553 356667778887776665433222 24445555555
Q ss_pred CC
Q 015671 373 QP 374 (403)
Q Consensus 373 ~~ 374 (403)
..
T Consensus 357 ~~ 358 (505)
T KOG3207|consen 357 VK 358 (505)
T ss_pred hh
Confidence 54
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=3.5e-11 Score=105.93 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=133.7
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC----CCCCCCC--------CCCCCceEEEccCCC
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP----LKSFPSN--------LSAEKLVLFEVPEND 164 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~----~~~lp~~--------~~l~~L~~L~l~~~~ 164 (403)
...+..++.+++++|.|+.+. ...+...+.. ++|+.-++++.- ...+|.. ...++|++++|++|.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred hcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 445666677777777664221 1222333444 566666665421 1222221 134466666666665
Q ss_pred cc-----ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC
Q 015671 165 IE-----QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK 239 (403)
Q Consensus 165 ~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 239 (403)
+. .+...++++..|++|.+.+|. +. .... ..++ ..|..|. ...-.+.-+.|+++.+.+|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg-~~ag-~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LG-PEAG-GRLG--RALFELA---------VNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CC-hhHH-HHHH--HHHHHHH---------HHhccCCCcceEEEEeecccc
Confidence 43 122345556666666666662 11 0000 0000 0011111 000122334556666555432
Q ss_pred CCCCcccc-----c--CCCcEEEecCccCc-----ccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEee
Q 015671 240 LKRLPEIS-----S--GNISWLFLTGTAIK-----ELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNL 303 (403)
Q Consensus 240 ~~~~~~~~-----~--~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l 303 (403)
- ..+... . +.|+.+.+..|.|. -+...+..+++|++|++.+|.++.. +...+..+++|+.|++
T Consensus 170 e-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 E-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred c-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 2 211110 0 45666666655553 2334568899999999999987642 3345667889999999
Q ss_pred cCCCCCccc----Cccc-CCCCCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcC
Q 015671 304 YGCSNLQRL----PECL-GQLSSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 304 ~~~~~~~~~----~~~l-~~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
++|.+...- .+++ ...++|+.|.+.+|.++ .+..++...|.|..|++++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999875432 2233 45889999999999988 2334556689999999999965
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.4e-10 Score=98.78 Aligned_cols=128 Identities=27% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEE
Q 015671 224 FNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVL 301 (403)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 301 (403)
.....|+++++++|. ++.+..... +.++.|+++.|.+..+.. +..+++|+.|++++|. +..+..+-..+.++++|
T Consensus 281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 345678888888854 444444333 888899999998887765 7889999999999987 44455555678889999
Q ss_pred eecCCCCCcccCcccCCCCCCCEEEccCCCCcccC--hhhhcCCCCCEEeccCCcCC
Q 015671 302 NLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP--ESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 302 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l 356 (403)
.+++|.+.. + ..+..+-+|..|++++|+|..+. ..++++|+|+.+.+.+|+..
T Consensus 358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999865433 2 24667778999999999998543 46899999999999999854
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.9e-11 Score=106.29 Aligned_cols=201 Identities=12% Similarity=0.049 Sum_probs=146.9
Q ss_pred CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCcccc---ccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671 131 AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIEQL---WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK 204 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 204 (403)
.+|+.+.|..+++...+. .. .+++++.|||+.|-+..+ ...+..+++|+.|+++.|+... -+.. ..-..++.
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s-~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISS-NTTLLLSH 198 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-Cccc-cchhhhhh
Confidence 789999999999887763 33 699999999999977653 4567889999999999985332 1111 11225688
Q ss_pred CcEEEecCCCCCC-ccCccCCCCCCCCEEeecCCCCCCC--CcccccCCCcEEEecCccCcccC--hhhhCCCCCCEEec
Q 015671 205 VVILNLRGSKSLK-SLPSEIFNLEFLTKLDLSGCSKLKR--LPEISSGNISWLFLTGTAIKELP--SSIESLLRLEYLDL 279 (403)
Q Consensus 205 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l 279 (403)
|+.|.++.|.+.. .+-..+..+|+|+.|++..|..+.. .+.-....|++|+|++|.+-.++ ...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999998763 2333455789999999999853322 22222288999999999888766 56689999999999
Q ss_pred ccCcCCCc-CCcc-----ccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCc
Q 015671 280 SDCKRLKS-LPSS-----LCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 280 ~~~~~~~~-~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+.|.+... .|+. ...+++|+.|++..|++.+. .-..+..+++|+.|.+..+.+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 99886542 3332 34678999999999987432 1234556778888888787776
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.2e-09 Score=90.13 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCceEEEccCCCccccccccc-cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc
Q 015671 143 LKSFPSNLSAEKLVLFEVPENDIEQLWDCVK-HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS 221 (403)
Q Consensus 143 ~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 221 (403)
++..|...+..++++|+|.++.|+.+. .++ .+.+|+.|++++| .+..++.+..++.|++|++++|.+.. +.+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-----~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~ 81 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-----QITKLEGLPGLPRLKTLDLSNNRISS-ISE 81 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS-------S--TT----TT--EEE--SS---S--CH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCC-----CCccccCccChhhhhhcccCCCCCCc-ccc
Confidence 334444444445566666666655553 222 4556666666666 34444455556666666666655332 222
Q ss_pred cC-CCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCC---ccccCC
Q 015671 222 EI-FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLP---SSLCKL 295 (403)
Q Consensus 222 ~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l 295 (403)
.+ ..+++|++|++++|. +.++. ..+..+++|+.|++.+|+....-- ..+..+
T Consensus 82 ~l~~~lp~L~~L~L~~N~----------------------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK----------------------ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp HHHHH-TT--EEE-TTS-------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred chHHhCCcCCEEECcCCc----------------------CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 22 235566666665533 22111 234456666666666666543211 123456
Q ss_pred CCCcEEeec
Q 015671 296 KSLGVLNLY 304 (403)
Q Consensus 296 ~~L~~L~l~ 304 (403)
|+|+.||-.
T Consensus 140 P~Lk~LD~~ 148 (175)
T PF14580_consen 140 PSLKVLDGQ 148 (175)
T ss_dssp TT-SEETTE
T ss_pred ChhheeCCE
Confidence 666666643
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=6.3e-09 Score=104.12 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=95.6
Q ss_pred CcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671 251 ISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE 329 (403)
Q Consensus 251 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 329 (403)
++.|+++++.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 677888888887 7788889999999999999998889998899999999999999999999999999999999999999
Q ss_pred CCCc-ccChhhhcC-CCCCEEeccCCcCCCcCCC
Q 015671 330 TNIE-RIPESIIQH-FVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 330 ~~l~-~l~~~~~~~-~~L~~L~l~~c~~l~~lp~ 361 (403)
|.++ .+|..+... ..+..+++.+|+.+...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9988 788877653 4677888998887776664
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=6.7e-11 Score=110.41 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=77.5
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS 176 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 176 (403)
+..+..|..+.++.|.+ ..+|..+.. ..|.+|+|+.|++..+|..++.--|+.|-+++|+++.+|..++.++
T Consensus 94 ~~~f~~Le~liLy~n~~-------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCI-------RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLP 166 (722)
T ss_pred HHHHHHHHHHHHHhccc-------eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccch
Confidence 33334444444554433 344555555 5555555555555555555544445555555555555555555555
Q ss_pred CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEe
Q 015671 177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 256 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 256 (403)
+|..|+.+.|. +. .+ ++.++.+.+|+.|.+..|. ...+|+.++ ...|..|++
T Consensus 167 tl~~ld~s~ne-i~-sl--psql~~l~slr~l~vrRn~-l~~lp~El~-----------------------~LpLi~lDf 218 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQ-SL--PSQLGYLTSLRDLNVRRNH-LEDLPEELC-----------------------SLPLIRLDF 218 (722)
T ss_pred hHHHhhhhhhh-hh-hc--hHHhhhHHHHHHHHHhhhh-hhhCCHHHh-----------------------CCceeeeec
Confidence 55555555552 11 11 2234444444555444433 233343333 244555555
Q ss_pred cCccCcccChhhhCCCCCCEEecccCc
Q 015671 257 TGTAIKELPSSIESLLRLEYLDLSDCK 283 (403)
Q Consensus 257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~ 283 (403)
++|++..+|..+.+|..|++|-|.+|.
T Consensus 219 ScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 219 SCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ccCceeecchhhhhhhhheeeeeccCC
Confidence 556666666666666666666666665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2.3e-09 Score=92.81 Aligned_cols=131 Identities=22% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEeccc
Q 015671 203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSD 281 (403)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 281 (403)
..|+++++++|. +..+.+++.-.|.++.|+++.|... ....+.. ++|..|++++|.++++..+-.++.++++|.+++
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 567888888876 4556666777888999999986543 3344444 889999999998888877777888999999998
Q ss_pred CcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh
Q 015671 282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE 337 (403)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~ 337 (403)
|.+- . .++++.+-+|..||+++|++... -...++++|.|+.+.+.+|.+..++.
T Consensus 362 N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8632 2 24577788899999999876542 22457889999999999999886654
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-09 Score=95.37 Aligned_cols=204 Identities=16% Similarity=0.124 Sum_probs=128.0
Q ss_pred CCCCceEEEccCCCcc-----ccccccccCCCCcEeecccccCcccc----CCC-----CCCCCCCCCCcEEEecCCCCC
Q 015671 151 SAEKLVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLIAK----TPN-----PTLMPRLNKVVILNLRGSKSL 216 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~-----~~~~~~l~~L~~L~l~~~~~~ 216 (403)
.+..++++++++|.+. .+.+.+.+.++|+..++++- ++|. +|. ...+..+++|++++|++|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4555666666666553 23345555566666666542 1111 111 012334456777777776654
Q ss_pred CccCcc----CCCCCCCCEEeecCCCCCCCCc--------------cccc-CCCcEEEecCccCcccC-----hhhhCCC
Q 015671 217 KSLPSE----IFNLEFLTKLDLSGCSKLKRLP--------------EISS-GNISWLFLTGTAIKELP-----SSIESLL 272 (403)
Q Consensus 217 ~~~~~~----~~~l~~L~~L~l~~~~~~~~~~--------------~~~~-~~L~~L~l~~~~~~~l~-----~~~~~l~ 272 (403)
...++. +..+++|++|.+.+|..-..-- .... +.|+.+....|.+...+ ..+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 443322 2346677777776654221100 0011 78999999999887544 3457778
Q ss_pred CCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----ccChhh
Q 015671 273 RLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----RIPESI 339 (403)
Q Consensus 273 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----~l~~~~ 339 (403)
.|+.+.+..|.+... +...+..+++|++|+|.+|.+... +...+..+++|+.|.+.+|.++ .+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999998875432 223567899999999999887543 4456677889999999999887 222222
Q ss_pred -hcCCCCCEEeccCCcCC
Q 015671 340 -IQHFVLRYLLLSYSERL 356 (403)
Q Consensus 340 -~~~~~L~~L~l~~c~~l 356 (403)
...|+|+.|.+.+|...
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 45799999999999764
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=7.1e-08 Score=96.65 Aligned_cols=90 Identities=29% Similarity=0.355 Sum_probs=85.0
Q ss_pred CCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEecc
Q 015671 273 RLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLS 351 (403)
Q Consensus 273 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~ 351 (403)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCcCCCcCCCC
Q 015671 352 YSERLQSLPSP 362 (403)
Q Consensus 352 ~c~~l~~lp~~ 362 (403)
+|...+.+|..
T Consensus 499 ~N~l~g~iP~~ 509 (623)
T PLN03150 499 GNSLSGRVPAA 509 (623)
T ss_pred CCcccccCChH
Confidence 99999999973
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=8.6e-09 Score=98.58 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-CCCCCCceEEEccCCCccccccccccCCC
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-NLSAEKLVLFEVPENDIEQLWDCVKHYSK 177 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 177 (403)
.+..++.+.+..|.+. .....+.. .+|..|++.+|.+..+.. .-.+.+|++|++++|.|..+ ..+..++.
T Consensus 70 ~l~~l~~l~l~~n~i~-------~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~ 141 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-------KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTL 141 (414)
T ss_pred HhHhHHhhccchhhhh-------hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccc
Confidence 3444555555555441 22223444 677777777777776666 33577777777777777766 34455666
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCC
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCS 238 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 238 (403)
|+.|++++| .+..+..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.
T Consensus 142 L~~L~l~~N-----~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 142 LKELNLSGN-----LISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhheeccC-----cchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 777777777 45555556667777777777766433222 1 3456666666666643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.52 E-value=9.7e-08 Score=64.58 Aligned_cols=56 Identities=30% Similarity=0.370 Sum_probs=23.0
Q ss_pred CcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCC
Q 015671 298 LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYS 353 (403)
Q Consensus 298 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c 353 (403)
|++|++++|.+....+.+|.++++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444443332222334444444444444444443322 3344444444444444
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2e-09 Score=93.04 Aligned_cols=175 Identities=21% Similarity=0.169 Sum_probs=102.8
Q ss_pred CCceEEEccCCCcc--ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC--ccCCCCCC
Q 015671 153 EKLVLFEVPENDIE--QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP--SEIFNLEF 228 (403)
Q Consensus 153 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~ 228 (403)
..|++|||+...++ .+-..++.+.+|+.|.+.++..-. .+ ...+.+=.+|+.|+++.|....+.. -.+..++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HH--HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 34888888888776 344567788888888888873211 12 2245555778888888876554432 23457888
Q ss_pred CCEEeecCCCCCCCCcc----cccCCCcEEEecCccC----cccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCc
Q 015671 229 LTKLDLSGCSKLKRLPE----ISSGNISWLFLTGTAI----KELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLG 299 (403)
Q Consensus 229 L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 299 (403)
|..|++++|......-. ...+.|+.|+++|+.- ..+..-...+++|..||+++|...+. ....+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888888865443311 1126677777776432 12222335667777777777654332 122345666777
Q ss_pred EEeecCCCCCcc-cCcccCCCCCCCEEEccCC
Q 015671 300 VLNLYGCSNLQR-LPECLGQLSSPITLGLTET 330 (403)
Q Consensus 300 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 330 (403)
.|.++.|..+.- .--.+...++|.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 777777653321 1112445566666665554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=1.5e-08 Score=96.87 Aligned_cols=194 Identities=23% Similarity=0.224 Sum_probs=130.5
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671 131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN 209 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 209 (403)
..++.+++..+.+..+-... .+.+|..|++.+|.+..+...+..+++|++|++++| .|..+..+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-----~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-----KITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-----ccccccchhhccchhhhe
Confidence 55666667777777644433 789999999999999998776889999999999999 666677788888899999
Q ss_pred ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcc--cccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCc
Q 015671 210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE--ISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS 287 (403)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 287 (403)
+.+|.+. .+. .+..+++|+.+++++|.....-+. .....++.+.+.+|.+..+. .+..+..+..+++..|.+...
T Consensus 147 l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCcch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 9998743 333 255689999999999765443331 22378888888888876543 233333444445555554332
Q ss_pred CCccccCCCC--CcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671 288 LPSSLCKLKS--LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 288 ~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 335 (403)
-+ +..+.. |+.++++++++... +..+..+..+..|++.++.+..+
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc
Confidence 11 112222 67777777655432 23455667777777777666533
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.9e-07 Score=62.24 Aligned_cols=61 Identities=30% Similarity=0.360 Sum_probs=53.8
Q ss_pred CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671 272 LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI 332 (403)
Q Consensus 272 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 332 (403)
|+|++|++++|.+....+..+..+++|+.|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999986655556788999999999999998877778999999999999999975
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.6e-09 Score=91.53 Aligned_cols=176 Identities=18% Similarity=0.117 Sum_probs=107.8
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc--c--CCC
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--S--GNI 251 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~--~~L 251 (403)
..|++|+++.. .++ .-.-...+..+.+|+.|.+.++.....+...++.-.+|+.|+++.|+.++....-. . ..|
T Consensus 185 sRlq~lDLS~s-~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchh-hee-HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 35788888775 111 00111234567888888888887777776667777888889888887766533211 1 677
Q ss_pred cEEEecCccCc--ccChhhhC-CCCCCEEecccCcCC---CcCCccccCCCCCcEEeecCCCCCc-ccCcccCCCCCCCE
Q 015671 252 SWLFLTGTAIK--ELPSSIES-LLRLEYLDLSDCKRL---KSLPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPIT 324 (403)
Q Consensus 252 ~~L~l~~~~~~--~l~~~~~~-l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 324 (403)
.+|++++|... .+...+.+ -++|+.|+++|+..- ..+..-...+|+|..|||++|.... ..-.++-.++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 77778776654 22222222 357777777776421 1122223467788888888775443 23345566777888
Q ss_pred EEccCCCCc--ccChhhhcCCCCCEEeccCC
Q 015671 325 LGLTETNIE--RIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 325 L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c 353 (403)
|.++.|..- ..--.+...|+|.+|++.+|
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 888777533 22223566777888887776
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.5e-07 Score=81.73 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=140.0
Q ss_pred EEEecCCCCCCCCCCC----CCCCceEEEccCCCccc---cccccccCCCCcEeecccccCccccCCCCCCCC-CCCCCc
Q 015671 135 YLHWHGYPLKSFPSNL----SAEKLVLFEVPENDIEQ---LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP-RLNKVV 206 (403)
Q Consensus 135 ~L~l~~~~~~~lp~~~----~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~ 206 (403)
.|.+.++.+.+..... ...+++.+||.+|.++. +...+.+++.|+.|+++.|... +.+..++ .+.+|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~----s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS----SDIKSLPLPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC----CccccCcccccceE
Confidence 4555566555544332 46788889999988875 4456778999999999988322 2223332 456788
Q ss_pred EEEecCCCCCC-ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCC
Q 015671 207 ILNLRGSKSLK-SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL 285 (403)
Q Consensus 207 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 285 (403)
.|-+.+..... ...+.+..+|.++.|.++.| +++.+++..+.++.+. +.+.+|+...|...
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N------------~~rq~n~Dd~c~e~~s------~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN------------SLRQLNLDDNCIEDWS------TEVLTLHQLPCLEQ 186 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc------------hhhhhccccccccccc------hhhhhhhcCCcHHH
Confidence 88887754332 23344567788888888875 3555566665555433 23344444444321
Q ss_pred Cc--CCccccCCCCCcEEeecCCCCCc-ccCcccCCCCCCCEEEccCCCCcccCh--hhhcCCCCCEEeccCCcCCCcCC
Q 015671 286 KS--LPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPITLGLTETNIERIPE--SIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 286 ~~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
.- .-.....+|++..+.+..|++-. +-......++.+..|.|..++|.++.. .+..++.|..|.+++++....+-
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 10 00011235777778887776543 233456678888889999998885543 56788999999999999887776
Q ss_pred CC---eEeccCCCCCCCchh
Q 015671 361 SP---LFLARGCLAMQPFLG 377 (403)
Q Consensus 361 ~~---~l~i~~c~~l~~~~~ 377 (403)
.. .+-|...++++.+..
T Consensus 267 ~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCcceEEEEeeccceEEecC
Confidence 63 666777888777443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=2.4e-05 Score=72.81 Aligned_cols=139 Identities=24% Similarity=0.383 Sum_probs=87.5
Q ss_pred cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCC
Q 015671 172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI 251 (403)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L 251 (403)
+..+.+++.|++++| .++ .+|. +. .+|++|.+.+|.....+|..+ .++|+.|.+++|..+..+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~-sLP~---LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIE-SLPV---LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCc-ccCC---CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----ccc
Confidence 455788999999998 555 4542 22 468999999887777777644 3689999999987666555 568
Q ss_pred cEEEecCccCcccChhhhCCCCCCEEecccCcCC--CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671 252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL--KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE 329 (403)
Q Consensus 252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 329 (403)
+.|.+.++....++. -.++|+.|.+.++... ..+|.. -.++|+.|++++|.... +|+.+ ..+|+.|.++.
T Consensus 115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence 888887655432221 1134566666443211 111211 12578889988887543 33322 25788888876
Q ss_pred CC
Q 015671 330 TN 331 (403)
Q Consensus 330 ~~ 331 (403)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.8e-05 Score=73.54 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=101.9
Q ss_pred CCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCc-cCcccChhhhCCCCCCEEe
Q 015671 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT-AIKELPSSIESLLRLEYLD 278 (403)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~ 278 (403)
..+.+++.|++++|. ...+|. -.++|+.|.+++|..+..+|.....+|+.|.+++| .+..+| +.|+.|+
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceEE
Confidence 345788999999984 566663 23479999999999888888766689999999987 666665 3577777
Q ss_pred cccCcC--CCcCCccccCCCCCcEEeecCCCCC--cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671 279 LSDCKR--LKSLPSSLCKLKSLGVLNLYGCSNL--QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 279 l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~ 354 (403)
+..+.. .+.+| ++|+.|.+.+++.. ..+|.. --++|+.|.+++|....+|..+. .+|+.|+++.|.
T Consensus 119 L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 765432 23333 35677777543311 111111 12579999999998776665443 589999998763
Q ss_pred ------CCCcCCCC-eEeccCCCCCCC
Q 015671 355 ------RLQSLPSP-LFLARGCLAMQP 374 (403)
Q Consensus 355 ------~l~~lp~~-~l~i~~c~~l~~ 374 (403)
....+|.. .+.+.+|-.+..
T Consensus 189 ~~sLeI~~~sLP~nl~L~f~n~lkL~~ 215 (426)
T PRK15386 189 KTTWNISFEGFPDGLDIDLQNSVLLSP 215 (426)
T ss_pred cccccCcccccccccEechhhhcccCH
Confidence 22355553 566666655443
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=1.5e-07 Score=85.37 Aligned_cols=273 Identities=16% Similarity=0.144 Sum_probs=156.7
Q ss_pred hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC-CCCCC--CCC-CCCCceEEEccCCC-ccc--
Q 015671 96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSFP--SNL-SAEKLVLFEVPEND-IEQ-- 167 (403)
Q Consensus 96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~-~~~lp--~~~-~l~~L~~L~l~~~~-~~~-- 167 (403)
..-..+|++..|.++++... +...+...-.+ ..|++|++..|. ++... ... .+++|.+|+++.+. +++
T Consensus 158 t~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred HHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34456888888888887532 11222222223 778888887754 33221 111 46778888887763 332
Q ss_pred cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC--ccCCCCCCCCEEeecCCCCCCCCcc
Q 015671 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP--SEIFNLEFLTKLDLSGCSKLKRLPE 245 (403)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~ 245 (403)
+-.....+..++.+...+|.... .-.-...-..+..+..+++..|..+.... ..-..+..|+.|..++|..++..+-
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred chHHhccchhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 33344555667777666664322 00000111223444555554553332211 1112466777777777766554433
Q ss_pred ccc----CCCcEEEecCcc-Ccc--cChhhhCCCCCCEEecccCcCCCc--CCccccCCCCCcEEeecCCCCCccc----
Q 015671 246 ISS----GNISWLFLTGTA-IKE--LPSSIESLLRLEYLDLSDCKRLKS--LPSSLCKLKSLGVLNLYGCSNLQRL---- 312 (403)
Q Consensus 246 ~~~----~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~---- 312 (403)
... .+|+.+.+..+. ++. +...-..++.|+.+++.+|..... +...-.+++.|+++.+++|......
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence 222 667777776543 331 122235678899999988765432 3333457889999999998765432
Q ss_pred -CcccCCCCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671 313 -PECLGQLSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 313 -~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
...-.++..|..+.++++... .....+..+++|+.+++-+|+....-|-. -....||+++.
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~-~~~~~lp~i~v 456 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS-RFATHLPNIKV 456 (483)
T ss_pred hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-HHHhhCcccee
Confidence 233456778999999999766 55566788899999999999754433321 11356666665
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=1.2e-06 Score=87.99 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=78.2
Q ss_pred CCeeEEEecCCC--CCCCCCCC--CCCCceEEEccCCCcc--ccccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671 131 AEVKYLHWHGYP--LKSFPSNL--SAEKLVLFEVPENDIE--QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK 204 (403)
Q Consensus 131 ~~L~~L~l~~~~--~~~lp~~~--~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 204 (403)
.+|++|+++|.. ...+|..+ .+|.|+.|.+++-.+. ++.....++++|..||++++ .++++.++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-----nI~nl~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-----NISNLSGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-----CccCcHHHhcccc
Confidence 789999998855 23444444 4899999999987664 35567788999999999998 6777788999999
Q ss_pred CcEEEecCCCCCCc-cCccCCCCCCCCEEeecCCCC
Q 015671 205 VVILNLRGSKSLKS-LPSEIFNLEFLTKLDLSGCSK 239 (403)
Q Consensus 205 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 239 (403)
|+.|.+.+-.+... --..+.++++|+.||+|....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 99998887443321 112366899999999997443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=7.8e-08 Score=92.78 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccc-cCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL-CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
+.++.|+++.|++++.. .+..+++|++|||++|. +..+|..- ..+ .|+.|.+++|...... .++++.+|+.||+
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLR--GIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhh--hHHhhhhhhccch
Confidence 55666666666666554 45667777777777765 33333311 122 3677777765543322 3556777777777
Q ss_pred cCCCCcccC--hhhhcCCCCCEEeccCCcC
Q 015671 328 TETNIERIP--ESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 328 ~~~~l~~l~--~~~~~~~~L~~L~l~~c~~ 355 (403)
++|-+.... ..++.+..|+.|++.||+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777666322 1345566677777777753
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=1.4e-06 Score=84.32 Aligned_cols=173 Identities=20% Similarity=0.146 Sum_probs=112.7
Q ss_pred cCCCCcEeecccccCccccCCC-CCCCCCCCCCcEEEecCCCCCCccCccCCCC-CCCCEEeecCCC---------CCCC
Q 015671 174 HYSKLNQIIHAVCHRLIAKTPN-PTLMPRLNKVVILNLRGSKSLKSLPSEIFNL-EFLTKLDLSGCS---------KLKR 242 (403)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~---------~~~~ 242 (403)
-+++++.|.+-.... .-|. +-.+..+.+|++|.+.+|.+.. ..++..+ ..|++|...+.. -.+.
T Consensus 82 ~lqkt~~lkl~~~pa---~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd 156 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPA---RDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGD 156 (1096)
T ss_pred HHhhheeeeecccCC---CCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccc
Confidence 355555555543321 2221 2345567888999999987433 1112122 245555443210 0111
Q ss_pred Cccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc-ccCCCC
Q 015671 243 LPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLS 320 (403)
Q Consensus 243 ~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~ 320 (403)
+..... ..|...++++|.+..+..++.-++.|+.|+++.|++...- .+..++.|+.|||++|.+.. +|. ...++.
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~ 233 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK 233 (1096)
T ss_pred cccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh
Confidence 111111 4566677788888888888899999999999999865432 57789999999999976543 332 222344
Q ss_pred CCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 321 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
|+.|.+++|.++.+. .+.++.+|+.||+++|-+.
T Consensus 234 -L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred -heeeeecccHHHhhh-hHHhhhhhhccchhHhhhh
Confidence 999999999999887 5789999999999999543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.6e-05 Score=49.34 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=19.7
Q ss_pred CceEEEccCCCccccccccccCCCCcEeecccc
Q 015671 154 KLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVC 186 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 186 (403)
+|++|++++|+++.+|..+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456666666666666555666666666666666
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.81 E-value=1.2e-05 Score=69.32 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=95.8
Q ss_pred CCCceEEEccCCCcc-----ccccccccCCCCcEeecccccCcccc----CCC-----CCCCCCCCCCcEEEecCCCCCC
Q 015671 152 AEKLVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLIAK----TPN-----PTLMPRLNKVVILNLRGSKSLK 217 (403)
Q Consensus 152 l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~-----~~~~~~l~~L~~L~l~~~~~~~ 217 (403)
+..+..++|++|.|. .+...+.+-.+|+..++++- .+|. ++. ...+-+||.|+..++++|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 445555666665543 23344444555555555442 1111 110 1234455666666666665555
Q ss_pred ccCccC----CCCCCCCEEeecCCCCCCCCc--------------cccc-CCCcEEEecCccCcccChh-----hhCCCC
Q 015671 218 SLPSEI----FNLEFLTKLDLSGCSKLKRLP--------------EISS-GNISWLFLTGTAIKELPSS-----IESLLR 273 (403)
Q Consensus 218 ~~~~~~----~~l~~L~~L~l~~~~~~~~~~--------------~~~~-~~L~~L~l~~~~~~~l~~~-----~~~l~~ 273 (403)
..|+.+ +.-+.|.+|.+++|..-...- .... |.|+......|.+...|.. +.+-.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 444322 344556666666543211100 0000 5566666666665544421 222346
Q ss_pred CCEEecccCcCCCc-----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc--ccChhh---
Q 015671 274 LEYLDLSDCKRLKS-----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE--RIPESI--- 339 (403)
Q Consensus 274 L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~--~l~~~~--- 339 (403)
|+.+.+..|.+... +--.+..+.+|+.|++..|.+... +...++..+.|++|.+.+|-++ .....+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 66666666654321 001233456677777776655422 2334455556677777666655 111111
Q ss_pred --hcCCCCCEEeccCCc
Q 015671 340 --IQHFVLRYLLLSYSE 354 (403)
Q Consensus 340 --~~~~~L~~L~l~~c~ 354 (403)
...|+|..|...+|.
T Consensus 267 ~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 267 NEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhhcCCCccccccchhh
Confidence 234566666666664
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.8e-05 Score=63.36 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccccccc-CCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKH-YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN 209 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 209 (403)
.+.-.++|++|.+..++..-.++.|.+|.+.+|.|+.+.+.+.. +++|+.|.+.+| ++. ++.++..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chh-hhhhcchhccCCccceee
Confidence 56777888888887777666888999999999999988665554 567999999988 444 566667778888899998
Q ss_pred ecCCCCCCcc---CccCCCCCCCCEEeecCC
Q 015671 210 LRGSKSLKSL---PSEIFNLEFLTKLDLSGC 237 (403)
Q Consensus 210 l~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 237 (403)
+-+|.....- -..+..+++|++||+..-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8887643221 123456788888888753
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=5e-06 Score=72.43 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=102.5
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC----CCCCCCCCCCceEEEccCCCcc--cccccc
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK----SFPSNLSAEKLVLFEVPENDIE--QLWDCV 172 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~----~lp~~~~l~~L~~L~l~~~~~~--~l~~~~ 172 (403)
.++.++.+++.+|.++. ...+..-+.. ++|++|+++.|++. ++| ....+|++|-|.++++. .....+
T Consensus 69 ~~~~v~elDL~~N~iSd----WseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD----WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred Hhhhhhhhhcccchhcc----HHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhh
Confidence 35677777777777641 1122222333 77777777777643 344 25667777777777654 234456
Q ss_pred ccCCCCcEeecccccCccccCCCCCCCCC-CCCCcEEEecCCCCCCc--cCccCCCCCCCCEEeecCCCCCCCCcc-cc-
Q 015671 173 KHYSKLNQIIHAVCHRLIAKTPNPTLMPR-LNKVVILNLRGSKSLKS--LPSEIFNLEFLTKLDLSGCSKLKRLPE-IS- 247 (403)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~- 247 (403)
..++.++.|+++.|..-.-.+.+ ..... -+.+++|.+..|..... ...-..-++++..+-+..|+.-+.... .+
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred hcchhhhhhhhccchhhhhcccc-ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence 66777777777766211001110 00110 13344555544432111 111112356667666666542221111 11
Q ss_pred -cCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCCc------cccCCCCCcEEe
Q 015671 248 -SGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLPS------SLCKLKSLGVLN 302 (403)
Q Consensus 248 -~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~ 302 (403)
.+.+..|+++.+.+.++. ..+..++.|.-|.+..+++...+.. -++.+++++.|+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 156667777777766443 3456778888888877776554332 245566666664
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.78 E-value=3.9e-07 Score=82.66 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=54.9
Q ss_pred hCCCCCCEEecccCcCCCcCCc--cccCCCCCcEEeecCCCCCcc--cCcccCCCCCCCEEEccCCCCc------ccChh
Q 015671 269 ESLLRLEYLDLSDCKRLKSLPS--SLCKLKSLGVLNLYGCSNLQR--LPECLGQLSSPITLGLTETNIE------RIPES 338 (403)
Q Consensus 269 ~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~------~l~~~ 338 (403)
.+.++|+.|.+++|+..+..-. --.+.+.|+.+++.+|..... +...-.+++.|+.|.++.|... .+...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 4556777777777664433211 112456677777766643221 2222345677777777766433 11223
Q ss_pred hhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671 339 IIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 339 ~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
-.....|..+.+.+|+.+..- ..-+...|+.|+.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDA--TLEHLSICRNLER 430 (483)
T ss_pred cccccccceeeecCCCCchHH--HHHHHhhCcccce
Confidence 345566777777777643221 1223455666665
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.6e-05 Score=47.73 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 321 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~ 354 (403)
+|++|++++|+++.+|..++.+++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4556666666666555555666666666666654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=80.03 Aligned_cols=112 Identities=26% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCccc------CcccCCCCC
Q 015671 249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRL------PECLGQLSS 321 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~l~~l~~ 321 (403)
++|..|++++++++.+ ..++.+.+|++|.+.+-.+.. ..-..+.++++|+.||+|........ -+.-..+|+
T Consensus 173 pNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred CccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 4444444445555555 567788888888887655432 11224667899999999885433221 122345889
Q ss_pred CCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 322 PITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 322 L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
|+.||.+++.+. .+...+..-|+|+.+.+-+|........
T Consensus 252 LrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~ 293 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAVSS 293 (699)
T ss_pred ccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccccc
Confidence 999999998877 3444455667788777766655544444
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.39 E-value=6.1e-05 Score=65.02 Aligned_cols=185 Identities=13% Similarity=0.070 Sum_probs=124.7
Q ss_pred cccccccCCCCcEeecccccCccccCCC--CCCCCCCCCCcEEEecCCCCCC----cc-------CccCCCCCCCCEEee
Q 015671 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPN--PTLMPRLNKVVILNLRGSKSLK----SL-------PSEIFNLEFLTKLDL 234 (403)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~----~~-------~~~~~~l~~L~~L~l 234 (403)
+...+.-+..++.+++++|..-+ +-.. -..+.+-.+|+..+++.- +.+ .+ .+.+-.|+.|++.++
T Consensus 22 v~eel~~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 33445568899999999994322 1000 113445577888887762 222 12 234568999999999
Q ss_pred cCCCCCCCCccccc------CCCcEEEecCccCcccC--------------hhhhCCCCCCEEecccCcCCCcCC-----
Q 015671 235 SGCSKLKRLPEISS------GNISWLFLTGTAIKELP--------------SSIESLLRLEYLDLSDCKRLKSLP----- 289 (403)
Q Consensus 235 ~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~----- 289 (403)
|+|..-...|.... +.|.+|.+++|++..+. .....-|.|++.....|++-. .+
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a 178 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSA 178 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHH
Confidence 99988777776543 89999999999876332 122456789999888877432 22
Q ss_pred ccccCCCCCcEEeecCCCCCcc-----cCcccCCCCCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcC
Q 015671 290 SSLCKLKSLGVLNLYGCSNLQR-----LPECLGQLSSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 290 ~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
..+..-..|+++.+..|.+.-. +-..+..+.+|+.|++++|.++ .+...+...+.|+.|.+.+|-.
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 1234446899999998765432 1123456889999999999988 2344556778899999999953
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00051 Score=56.89 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=6.5
Q ss_pred cCCCCCcEEeecC
Q 015671 293 CKLKSLGVLNLYG 305 (403)
Q Consensus 293 ~~l~~L~~L~l~~ 305 (403)
..+|+|++||...
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3455555555544
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=3.8e-05 Score=59.38 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEcc
Q 015671 250 NISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLT 328 (403)
Q Consensus 250 ~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 328 (403)
+|+..++++|.++++|..+ ..++.++.|++++|. ...+|..+..++.|+.|+++.|++... |..+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence 4444455556666666554 344566666666655 344555566666666666666554433 2233335556666666
Q ss_pred CCCCcccChh
Q 015671 329 ETNIERIPES 338 (403)
Q Consensus 329 ~~~l~~l~~~ 338 (403)
+|.+..+|..
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 6665555543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=3.7e-05 Score=59.47 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=77.8
Q ss_pred cEEEecCccCcccChh---hhCCCCCCEEecccCcCCCcCCcccc-CCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 252 SWLFLTGTAIKELPSS---IESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 252 ~~L~l~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
..++++.+.+-.++.. +.....|+..++++|.+ ...|..+. .++.++.|++++|. ...+|+.+..++.|+.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 3445555555444443 35556778889999874 45555543 56689999999865 4567778999999999999
Q ss_pred cCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 328 TETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+.|.+...|..+..+.+|-.|+..+|.. ..+|.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcc-ccCcH
Confidence 9999999998888888888898887753 33443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00039 Score=59.89 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCC--Ccc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN--DIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
..|..|++.+..++++...-.+++|++|.++.| ++. .++.....+++|++|++++|+ +. .+..+..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~-~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IK-DLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cc-cccccchhhhhcchhh
Confidence 445555555555555544446777888888777 333 344455556888888888773 22 2334445556666677
Q ss_pred EEecCCCCCCccC---ccCCCCCCCCEEeecC
Q 015671 208 LNLRGSKSLKSLP---SEIFNLEFLTKLDLSG 236 (403)
Q Consensus 208 L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 236 (403)
|++.+|....... ..+.-+++|..|+-..
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7777765433111 1223355666665544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0013 Score=56.79 Aligned_cols=82 Identities=27% Similarity=0.239 Sum_probs=40.3
Q ss_pred CCCCCCEEecccC--cCCCcCCccccCCCCCcEEeecCCCCC--cccCcccCCCCCCCEEEccCCCCcccC----hhhhc
Q 015671 270 SLLRLEYLDLSDC--KRLKSLPSSLCKLKSLGVLNLYGCSNL--QRLPECLGQLSSPITLGLTETNIERIP----ESIIQ 341 (403)
Q Consensus 270 ~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~l~----~~~~~ 341 (403)
.+++|++|.++.| +..+.++.....+|+|+++.+++|.+. .+++ .+..+.+|..|++.+|..+.+. ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 5556666666666 444444444444566666666665432 1221 2344555555566555544322 12334
Q ss_pred CCCCCEEeccC
Q 015671 342 HFVLRYLLLSY 352 (403)
Q Consensus 342 ~~~L~~L~l~~ 352 (403)
+++|+.|+-..
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 45555554433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=7.8e-05 Score=64.58 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=27.3
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc--cccccCCCCcEeecccc
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVC 186 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~ 186 (403)
+.|.+|.|+-|.++++.....+++|++|.|..|.|.++- .-+.++++|+.|.+..|
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 445555555555555544434455555555555554442 23444455555554443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.95 E-value=0.00056 Score=66.90 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=14.2
Q ss_pred CCCCCCCEEEccCCCCccc--ChhhhcCCCC
Q 015671 317 GQLSSPITLGLTETNIERI--PESIIQHFVL 345 (403)
Q Consensus 317 ~~l~~L~~L~l~~~~l~~l--~~~~~~~~~L 345 (403)
..++.++.+.+..+..... ...+..++.|
T Consensus 359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4556666666666553322 1233444544
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.82 E-value=0.00088 Score=65.54 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=10.4
Q ss_pred ccCCCCCcEEeecCCC
Q 015671 292 LCKLKSLGVLNLYGCS 307 (403)
Q Consensus 292 ~~~l~~L~~L~l~~~~ 307 (403)
...++.++.+.+..|.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3456677777776665
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.00067 Score=58.97 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=46.0
Q ss_pred CCCCCCEEeecCCCCCCCCcccc-cCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCCc-----cccCCC
Q 015671 225 NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLPS-----SLCKLK 296 (403)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~ 296 (403)
.|+.|++|.++-|. ++.+..+. +..|++|+|..|.|.++. ..+..+++|+.|.|..|+=.+.-+. .+.-+|
T Consensus 39 kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 45555555555533 22222222 256666666666666544 3567888888888888775555443 245578
Q ss_pred CCcEEe
Q 015671 297 SLGVLN 302 (403)
Q Consensus 297 ~L~~L~ 302 (403)
+|++||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 888876
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.012 Score=30.26 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=9.6
Q ss_pred ceEEEccCCCcccccccc
Q 015671 155 LVLFEVPENDIEQLWDCV 172 (403)
Q Consensus 155 L~~L~l~~~~~~~l~~~~ 172 (403)
|++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.89 E-value=0.17 Score=39.44 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=13.3
Q ss_pred CCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecC
Q 015671 198 LMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 198 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (403)
.+.++++|+.+.+.. .....-...+.++++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 344445555555543 21111123344455555555543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.17 Score=39.36 Aligned_cols=104 Identities=12% Similarity=0.196 Sum_probs=46.9
Q ss_pred ChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCCccccc
Q 015671 94 NPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPENDIEQLW 169 (403)
Q Consensus 94 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~~~~~l~ 169 (403)
...+|..+++|+.+.+... + ..+...... .+|+.+.+.++ +..++... .++.|+++.+.. .+..++
T Consensus 4 ~~~~F~~~~~l~~i~~~~~-~-------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNT-I-------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp -TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred CHHHHhCCCCCCEEEECCC-e-------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc
Confidence 3456777778888777542 2 233333332 57777777653 66665433 455677777754 444443
Q ss_pred -cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671 170 -DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212 (403)
Q Consensus 170 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (403)
..+..+++|+.+.+..+ +. .++. ..+.++ +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~-~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--IT-EIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---B-EEHT-TTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--cc-EEch-hhhcCC-CceEEEECC
Confidence 34555677777776542 21 2222 245555 666666554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.014 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=6.8
Q ss_pred CCEEEccCCCCcccCh
Q 015671 322 PITLGLTETNIERIPE 337 (403)
Q Consensus 322 L~~L~l~~~~l~~l~~ 337 (403)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.49 E-value=0.027 Score=26.86 Aligned_cols=10 Identities=50% Similarity=0.431 Sum_probs=3.2
Q ss_pred CCEEeccCCc
Q 015671 345 LRYLLLSYSE 354 (403)
Q Consensus 345 L~~L~l~~c~ 354 (403)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.96 E-value=0.036 Score=26.40 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=4.3
Q ss_pred eeEEEecCCCCCC
Q 015671 133 VKYLHWHGYPLKS 145 (403)
Q Consensus 133 L~~L~l~~~~~~~ 145 (403)
|+.|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=0.02 Score=47.74 Aligned_cols=80 Identities=26% Similarity=0.233 Sum_probs=44.3
Q ss_pred CCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc-Cccc-CCCCCCCEEEccCC-CCc-ccChhhhcCCCCCEEe
Q 015671 274 LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-PECL-GQLSSPITLGLTET-NIE-RIPESIIQHFVLRYLL 349 (403)
Q Consensus 274 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l-~~l~~L~~L~l~~~-~l~-~l~~~~~~~~~L~~L~ 349 (403)
++.++.+++.+...--..+.+++.++.|.+.+|.-.+.- .+.+ .-.++|+.|++++| +|+ .=..++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555544433334556666666666666544321 1111 13567777777776 566 2233566777777777
Q ss_pred ccCC
Q 015671 350 LSYS 353 (403)
Q Consensus 350 l~~c 353 (403)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6653
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=0.073 Score=44.45 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhc--CCCCCccccCChhHHH-HHHhhCcCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccC
Q 015671 37 LLQELGREIVRQES--INPGNRSRLWHHEDIY-EVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSS 113 (403)
Q Consensus 37 ll~dla~~~~~~e~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~ 113 (403)
-=+++|.++.+... +..++...++...+.. +.. ....+++....++.+.........+.+..++.|+.|.+.+|.
T Consensus 59 ~drAaAe~Il~~GgaVkf~~d~~~~~~d~~g~~~lp--~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 59 PDRAAAEWILHCGGAVKFVSDREWLQKDYNGYFSLP--GPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred hhhHHHHHHHhcCcceeecCChHhhcCcccceecCC--CCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 33567777777665 2222333332222111 111 111233333345555544444555677788888888887775
Q ss_pred C
Q 015671 114 F 114 (403)
Q Consensus 114 ~ 114 (403)
.
T Consensus 137 ~ 137 (221)
T KOG3864|consen 137 Y 137 (221)
T ss_pred c
Confidence 3
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.56 E-value=0.45 Score=25.30 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=12.8
Q ss_pred CCCCEEEccCCCCcccChh
Q 015671 320 SSPITLGLTETNIERIPES 338 (403)
Q Consensus 320 ~~L~~L~l~~~~l~~l~~~ 338 (403)
++|+.|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5667777777777766654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.56 E-value=0.45 Score=25.30 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=12.8
Q ss_pred CCCCEEEccCCCCcccChh
Q 015671 320 SSPITLGLTETNIERIPES 338 (403)
Q Consensus 320 ~~L~~L~l~~~~l~~l~~~ 338 (403)
++|+.|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5667777777777766654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.89 E-value=1.5 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=11.6
Q ss_pred CCCEEEccCCCCcccCh
Q 015671 321 SPITLGLTETNIERIPE 337 (403)
Q Consensus 321 ~L~~L~l~~~~l~~l~~ 337 (403)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46677777777776664
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.68 E-value=2 Score=22.80 Aligned_cols=15 Identities=33% Similarity=0.091 Sum_probs=11.3
Q ss_pred CCCCCEEeccCCcCC
Q 015671 342 HFVLRYLLLSYSERL 356 (403)
Q Consensus 342 ~~~L~~L~l~~c~~l 356 (403)
+++|++|++++|+.+
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 467888888888654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.94 E-value=0.03 Score=54.27 Aligned_cols=184 Identities=24% Similarity=0.190 Sum_probs=88.6
Q ss_pred ceEEEccCCCcc-----ccccccccCCCCcEeecccccCccccCCC-CCCCCCC-CCCcEEEecCCCCCCc----cCccC
Q 015671 155 LVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLIAKTPN-PTLMPRL-NKVVILNLRGSKSLKS----LPSEI 223 (403)
Q Consensus 155 L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 223 (403)
+..+.+..|.+. .+...+...+.|..|++++|......... ...+... ..++.|.+..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445555555443 23456667777777887777321100000 0111111 3345555555544322 23334
Q ss_pred CCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhh----CCCCCCEEecccCcCCCc----CCccccCC
Q 015671 224 FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIE----SLLRLEYLDLSDCKRLKS----LPSSLCKL 295 (403)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~----~l~~L~~L~l~~~~~~~~----~~~~~~~l 295 (403)
.....++.++++.|...... ...++..+. ...++++|++++|..+.. +...+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g-----------------~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELG-----------------LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG 231 (478)
T ss_pred hcccchhHHHHHhcccchhh-----------------hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence 44556666666665432110 001122222 355666666666654421 11123333
Q ss_pred CC-CcEEeecCCCCCcc----cCcccCCC-CCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcC
Q 015671 296 KS-LGVLNLYGCSNLQR----LPECLGQL-SSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 296 ~~-L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
+. +..|++..|...+. +...+..+ ..++.++++.|.++ .+...+..++.++.+.++.|+.
T Consensus 232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 44 55566666554432 22233344 55677777777766 3344455666777777776653
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.10 E-value=0.11 Score=44.45 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=49.7
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccC
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHY 175 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 175 (403)
+......++||++.|.. ..+-..+.. ..|..|+++.+.+.-+|.++ ....+..+++..|..+..|.+.+..
T Consensus 38 i~~~kr~tvld~~s~r~-------vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-------VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred hhccceeeeehhhhhHH-------HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 44455666677766543 222223333 55666666666666666666 4566666666666666666666677
Q ss_pred CCCcEeecccc
Q 015671 176 SKLNQIIHAVC 186 (403)
Q Consensus 176 ~~L~~L~l~~~ 186 (403)
+++++++..++
T Consensus 111 ~~~k~~e~k~~ 121 (326)
T KOG0473|consen 111 PHPKKNEQKKT 121 (326)
T ss_pred CCcchhhhccC
Confidence 77777666665
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.29 E-value=0.066 Score=45.72 Aligned_cols=86 Identities=22% Similarity=0.170 Sum_probs=43.7
Q ss_pred hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCE
Q 015671 268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRY 347 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~ 347 (403)
+.+....+.||++.|.. ..+-..+..++.|..|+++.+. ..-.|..++....+..+++..|+.+..|.+.+..|.+++
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 34445555555555442 2222233344555555555432 233444445555555555555666666666666666666
Q ss_pred EeccCCcC
Q 015671 348 LLLSYSER 355 (403)
Q Consensus 348 L~l~~c~~ 355 (403)
++..+++.
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 66655553
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=66.37 E-value=0.064 Score=52.03 Aligned_cols=112 Identities=24% Similarity=0.209 Sum_probs=69.4
Q ss_pred ccChhhhCCCCCCEEecccCcCCC----cCCcccc----CCCCCcEEeecCCCCCcc----cCcccCCCCC-CCEEEccC
Q 015671 263 ELPSSIESLLRLEYLDLSDCKRLK----SLPSSLC----KLKSLGVLNLYGCSNLQR----LPECLGQLSS-PITLGLTE 329 (403)
Q Consensus 263 ~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~-L~~L~l~~ 329 (403)
.+...+.....++.++++.|.+.. .++..+. ...+++.|.+.+|..... +...+...++ +..|++..
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 344555667888888888887531 1222233 467899999999876532 2233455555 77799999
Q ss_pred CCCc-----ccChhhhcC-CCCCEEeccCCcCCCcCCCC-eEeccCCCCCCC
Q 015671 330 TNIE-----RIPESIIQH-FVLRYLLLSYSERLQSLPSP-LFLARGCLAMQP 374 (403)
Q Consensus 330 ~~l~-----~l~~~~~~~-~~L~~L~l~~c~~l~~lp~~-~l~i~~c~~l~~ 374 (403)
|.+. .+...+... +.+++++++.|.+...-+.. .-.+..|+.++.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~ 294 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEE 294 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHH
Confidence 9877 234445555 67899999999766543331 112334554444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.85 E-value=5.3 Score=21.36 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=8.0
Q ss_pred CCceEEEccCCCccc
Q 015671 153 EKLVLFEVPENDIEQ 167 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~ 167 (403)
.+|+.|+++.|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 345555555555543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.46 E-value=3.5 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=5.0
Q ss_pred CCCEEEccCCCCc
Q 015671 321 SPITLGLTETNIE 333 (403)
Q Consensus 321 ~L~~L~l~~~~l~ 333 (403)
+|+.|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.46 E-value=15 Score=35.27 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=28.9
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcc
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIE 166 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~ 166 (403)
.-+.+|+++++.|.+....| ..++......+|+.-.++.-.+..++..-.-..+.+++++.|...
T Consensus 163 pnpr~r~~dls~npi~dkvp--ihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~K 227 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVP--IHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGK 227 (553)
T ss_pred CcchhhhhccCCCcccccCC--ccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCC
Confidence 34667778887777653322 222222222223332222222223332222334666666666554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.71 E-value=14 Score=19.96 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=8.8
Q ss_pred CCCCEEEccCCCCc
Q 015671 320 SSPITLGLTETNIE 333 (403)
Q Consensus 320 ~~L~~L~l~~~~l~ 333 (403)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.55 E-value=12 Score=36.61 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=51.0
Q ss_pred CCCCCcEEeecCCCCCc--ccCcccCCCCCCCEEEccCC--CCcccC-hhhhcCCCCCEEeccCCcCCCcCCCCeE---e
Q 015671 294 KLKSLGVLNLYGCSNLQ--RLPECLGQLSSPITLGLTET--NIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPLF---L 365 (403)
Q Consensus 294 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~--~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~~l---~ 365 (403)
+.+.+..+.|++|.+.. .+...-...++|+.|+|++| .+...+ -.-.....|++|-+.||+..+..-...- .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 56778888888877543 22222345789999999998 333111 1112345688999999988776666422 2
Q ss_pred ccC-CCCCCCch
Q 015671 366 ARG-CLAMQPFL 376 (403)
Q Consensus 366 i~~-c~~l~~~~ 376 (403)
|.. -|+|..+.
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 333 36666533
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.04 E-value=10 Score=37.02 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCC--CCCCCCCCC--CCCCceEEEccCCCcc
Q 015671 101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGY--PLKSFPSNL--SAEKLVLFEVPENDIE 166 (403)
Q Consensus 101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~--~~~~lp~~~--~l~~L~~L~l~~~~~~ 166 (403)
.+.+..+.+++|.+ ...+...++.. +.|+.|+|++| -+.+.+..- +...|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL-----~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL-----YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchh-----hchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 34455555555544 22222233333 55555555555 222222111 2334555555555443
No 91
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=30.42 E-value=42 Score=16.70 Aligned_cols=17 Identities=35% Similarity=0.827 Sum_probs=10.8
Q ss_pred ceEEEccCCCccccccc
Q 015671 155 LVLFEVPENDIEQLWDC 171 (403)
Q Consensus 155 L~~L~l~~~~~~~l~~~ 171 (403)
|-.|++.+++++.+++.
T Consensus 2 LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEG 18 (20)
T ss_pred cEEEECCCCChHHhcCc
Confidence 55667777776666543
Done!