Query 015671
Match_columns 403
No_of_seqs 237 out of 3456
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.9E-29 9.8E-34 257.1 18.7 258 131-391 418-765 (768)
2 3rgz_A Protein brassinosteroid 99.9 4.3E-27 1.5E-31 241.0 21.0 267 93-362 334-699 (768)
3 3v47_A TOLL-like receptor 5B a 99.9 3.4E-26 1.2E-30 220.7 24.5 294 76-382 30-407 (455)
4 4fcg_A Uncharacterized protein 99.9 1.2E-26 4E-31 214.0 18.9 223 100-353 79-311 (328)
5 2z7x_B TOLL-like receptor 1, v 99.9 9.8E-26 3.3E-30 221.2 24.7 283 86-382 29-480 (520)
6 3v47_A TOLL-like receptor 5B a 99.9 1.7E-25 5.7E-30 215.9 25.8 254 102-362 30-366 (455)
7 4ecn_A Leucine-rich repeat pro 99.9 2.9E-26 9.9E-31 234.5 20.6 260 95-362 508-801 (876)
8 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-27 1.1E-31 216.4 10.6 251 102-361 50-309 (313)
9 3t6q_A CD180 antigen; protein- 99.9 1.3E-25 4.5E-30 224.4 23.1 268 85-361 261-541 (606)
10 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-25 2E-29 217.7 27.4 290 76-382 52-509 (562)
11 2id5_A Lingo-1, leucine rich r 99.9 2.1E-25 7.2E-30 216.5 23.7 269 77-356 33-333 (477)
12 4eco_A Uncharacterized protein 99.9 6.8E-26 2.3E-30 227.1 20.3 246 102-361 305-583 (636)
13 4eco_A Uncharacterized protein 99.9 1.6E-26 5.5E-31 231.7 15.5 269 95-374 266-570 (636)
14 3t6q_A CD180 antigen; protein- 99.9 2.4E-25 8.2E-30 222.5 23.9 270 77-357 34-390 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 3.3E-25 1.1E-29 215.1 23.3 231 93-334 71-334 (477)
16 3o6n_A APL1; leucine-rich repe 99.9 1E-24 3.4E-29 206.2 25.5 262 92-374 59-343 (390)
17 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.3E-30 206.4 19.4 225 75-335 80-316 (328)
18 4ecn_A Leucine-rich repeat pro 99.9 3.6E-25 1.2E-29 226.5 23.7 247 100-361 546-823 (876)
19 4fmz_A Internalin; leucine ric 99.9 3.8E-25 1.3E-29 205.7 21.8 258 77-360 45-304 (347)
20 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.6E-29 217.2 26.3 251 92-356 65-337 (597)
21 3vq2_A TLR4, TOLL-like recepto 99.9 7E-25 2.4E-29 219.1 23.0 90 92-187 70-164 (606)
22 4fmz_A Internalin; leucine ric 99.9 1.8E-24 6.2E-29 201.1 24.1 272 76-377 66-340 (347)
23 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-25 5.2E-30 205.2 15.7 236 131-375 50-296 (313)
24 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-24 4.6E-29 217.1 23.8 252 97-360 302-562 (606)
25 3j0a_A TOLL-like receptor 5; m 99.9 1E-24 3.5E-29 225.6 21.7 153 76-238 24-185 (844)
26 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-25 1.3E-29 218.5 15.9 270 76-355 26-422 (549)
27 1xku_A Decorin; proteoglycan, 99.9 6.5E-24 2.2E-28 196.0 22.8 237 103-355 32-275 (330)
28 2z63_A TOLL-like receptor 4, v 99.9 2.3E-24 7.8E-29 213.8 20.7 87 93-186 67-159 (570)
29 2z7x_B TOLL-like receptor 1, v 99.9 1E-24 3.5E-29 214.0 17.5 245 102-359 21-415 (520)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.6E-28 202.7 23.9 248 97-375 59-323 (457)
31 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-23 4.7E-28 194.0 23.7 239 102-356 33-277 (332)
32 1xku_A Decorin; proteoglycan, 99.9 2E-23 6.9E-28 192.7 24.7 241 102-356 52-306 (330)
33 1o6v_A Internalin A; bacterial 99.9 8.4E-24 2.9E-28 204.5 22.1 241 98-357 64-323 (466)
34 2z63_A TOLL-like receptor 4, v 99.9 3.4E-24 1.2E-28 212.5 19.7 129 76-215 28-161 (570)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-24 2.2E-28 210.2 21.3 125 102-239 52-181 (562)
36 2z66_A Variable lymphocyte rec 99.9 6E-24 2.1E-28 194.1 19.4 202 131-356 52-261 (306)
37 2ft3_A Biglycan; proteoglycan, 99.9 2E-23 6.7E-28 192.9 22.2 240 102-356 54-307 (332)
38 3o6n_A APL1; leucine-rich repe 99.9 2.9E-24 1E-28 203.0 17.1 246 100-361 43-312 (390)
39 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-23 8.6E-28 200.1 23.2 248 97-374 37-301 (457)
40 3zyj_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 198.6 23.7 221 131-355 64-291 (440)
41 3zyi_A Leucine-rich repeat-con 99.9 4.2E-23 1.4E-27 198.9 23.7 220 131-354 75-301 (452)
42 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-23 1.5E-27 213.4 25.3 283 100-392 22-384 (844)
43 2z66_A Variable lymphocyte rec 99.9 2.4E-24 8.1E-29 196.8 13.9 227 76-333 28-261 (306)
44 3oja_B Anopheles plasmodium-re 99.9 8.8E-24 3E-28 210.5 18.8 246 100-361 49-318 (597)
45 1o6v_A Internalin A; bacterial 99.9 2.2E-23 7.6E-28 201.6 20.9 236 100-357 44-301 (466)
46 2z80_A TOLL-like receptor 2, v 99.9 5.6E-24 1.9E-28 198.3 14.7 250 102-360 52-318 (353)
47 1ziw_A TOLL-like receptor 3; i 99.9 4.6E-23 1.6E-27 208.8 21.6 243 76-329 25-305 (680)
48 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-23 5.8E-28 206.6 17.5 250 102-361 26-404 (549)
49 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-23 1.2E-27 187.1 17.6 202 131-356 32-238 (285)
50 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-22 8.9E-27 181.3 23.2 218 134-380 14-235 (285)
51 1ziw_A TOLL-like receptor 3; i 99.9 8.1E-22 2.8E-26 199.6 26.2 262 93-361 263-577 (680)
52 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-21 3.8E-26 196.8 24.9 114 249-362 445-561 (635)
53 1jl5_A Outer protein YOPM; leu 99.9 3.8E-21 1.3E-25 184.7 26.3 209 131-363 153-379 (454)
54 3o53_A Protein LRIM1, AGAP0063 99.9 6.7E-24 2.3E-28 194.7 6.2 244 95-357 27-276 (317)
55 3zyi_A Leucine-rich repeat-con 99.9 1.3E-21 4.6E-26 188.3 22.2 222 102-333 75-303 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 1.4E-21 4.7E-26 187.6 21.1 222 102-333 64-292 (440)
57 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-20 3.7E-25 187.3 24.4 227 102-361 61-302 (622)
58 3oja_A Leucine-rich immune mol 99.9 1.8E-22 6.2E-27 195.8 10.3 232 101-351 33-270 (487)
59 2z62_A TOLL-like receptor 4, v 99.9 8.7E-21 3E-25 170.4 20.6 215 138-357 14-238 (276)
60 2z80_A TOLL-like receptor 2, v 99.9 6.5E-22 2.2E-26 184.3 13.6 246 77-334 53-315 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-20 1.2E-24 183.5 24.9 222 102-361 40-278 (622)
62 1jl5_A Outer protein YOPM; leu 99.9 9.5E-20 3.3E-24 175.0 25.5 207 131-361 131-354 (454)
63 3oja_A Leucine-rich immune mol 99.9 2.8E-21 9.6E-26 187.4 14.7 211 131-356 34-250 (487)
64 3rfs_A Internalin B, repeat mo 99.9 2.6E-21 9E-26 173.4 13.4 200 131-362 41-241 (272)
65 1p9a_G Platelet glycoprotein I 99.9 4.1E-20 1.4E-24 167.1 21.2 195 131-333 10-208 (290)
66 2o6q_A Variable lymphocyte rec 99.9 9.2E-20 3.2E-24 163.2 22.3 199 131-354 16-216 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.8 7.7E-21 2.6E-25 174.3 14.0 216 131-361 34-256 (317)
68 1wwl_A Monocyte differentiatio 99.8 7.4E-22 2.5E-26 180.7 5.5 198 152-357 94-310 (312)
69 2o6q_A Variable lymphocyte rec 99.8 2.8E-19 9.6E-24 160.0 21.9 198 153-380 16-215 (270)
70 2xwt_C Thyrotropin receptor; s 99.8 8E-20 2.8E-24 160.5 15.7 196 154-355 32-238 (239)
71 1wwl_A Monocyte differentiatio 99.8 1.8E-21 6.3E-26 178.0 5.2 239 131-380 43-306 (312)
72 1h6u_A Internalin H; cell adhe 99.8 1.4E-19 4.6E-24 165.2 17.6 190 133-336 43-233 (308)
73 3rfs_A Internalin B, repeat mo 99.8 1.5E-19 5E-24 162.0 16.2 205 98-341 37-244 (272)
74 1h6u_A Internalin H; cell adhe 99.8 3.2E-19 1.1E-23 162.7 17.3 191 151-356 39-230 (308)
75 4glp_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 169.6 10.3 200 152-356 90-307 (310)
76 2z62_A TOLL-like receptor 4, v 99.8 9.1E-19 3.1E-23 157.2 18.7 199 131-333 28-237 (276)
77 1p9a_G Platelet glycoprotein I 99.8 3.7E-18 1.3E-22 154.2 20.6 198 151-356 8-208 (290)
78 2ca6_A RAN GTPase-activating p 99.8 2.3E-21 7.8E-26 182.9 -0.9 240 95-359 25-319 (386)
79 4ay9_X Follicle-stimulating ho 99.8 2E-18 6.8E-23 160.4 15.2 234 105-352 12-255 (350)
80 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-17 5.7E-22 166.3 23.0 247 98-356 324-580 (635)
81 4ay9_X Follicle-stimulating ho 99.8 8.1E-18 2.8E-22 156.3 19.0 221 134-361 12-241 (350)
82 2xwt_C Thyrotropin receptor; s 99.8 2.9E-18 9.9E-23 150.5 14.6 192 132-330 32-236 (239)
83 2ast_B S-phase kinase-associat 99.8 2.9E-19 9.8E-24 165.1 8.2 226 131-362 70-312 (336)
84 1z7x_W Ribonuclease inhibitor; 99.8 9.2E-21 3.1E-25 182.9 -3.0 251 103-356 86-383 (461)
85 2ast_B S-phase kinase-associat 99.8 1.2E-19 4E-24 167.7 4.4 216 133-353 49-282 (336)
86 3m19_A Variable lymphocyte rec 99.8 3.6E-17 1.2E-21 144.6 19.7 176 132-333 15-192 (251)
87 3cvr_A Invasion plasmid antige 99.8 1.8E-17 6E-22 162.4 18.1 186 131-341 59-252 (571)
88 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-20 5.8E-25 181.1 -3.9 276 77-356 86-411 (461)
89 3m19_A Variable lymphocyte rec 99.8 9.9E-17 3.4E-21 141.8 20.3 179 153-358 14-194 (251)
90 2ca6_A RAN GTPase-activating p 99.7 5.7E-20 1.9E-24 173.3 -2.9 227 131-357 9-288 (386)
91 3cvr_A Invasion plasmid antige 99.7 6.5E-17 2.2E-21 158.4 17.9 187 103-319 60-253 (571)
92 1h6t_A Internalin B; cell adhe 99.7 6.7E-17 2.3E-21 146.0 15.0 169 151-355 44-212 (291)
93 4glp_A Monocyte differentiatio 99.7 1.8E-17 6.2E-22 151.3 10.9 222 101-333 63-307 (310)
94 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 144.9 15.4 169 131-334 46-214 (291)
95 3goz_A Leucine-rich repeat-con 99.7 1.7E-18 5.6E-23 161.8 1.7 140 95-238 15-178 (362)
96 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.3E-21 135.6 12.2 106 249-356 88-194 (197)
97 1m9s_A Internalin B; cell inva 99.7 1.6E-16 5.5E-21 157.2 13.9 188 133-334 23-211 (605)
98 1m9s_A Internalin B; cell inva 99.7 2.5E-16 8.4E-21 155.9 14.9 168 99-284 40-209 (605)
99 2o6s_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 132.4 14.5 98 135-236 11-109 (208)
100 2o6s_A Variable lymphocyte rec 99.7 1.5E-15 5.3E-20 130.1 15.8 157 131-319 28-188 (208)
101 4ezg_A Putative uncharacterize 99.7 5.3E-16 1.8E-20 131.8 12.7 150 131-308 44-193 (197)
102 3goz_A Leucine-rich repeat-con 99.7 6.5E-18 2.2E-22 157.7 -0.7 245 107-358 3-299 (362)
103 1xeu_A Internalin C; cellular 99.6 3.3E-16 1.1E-20 139.3 9.3 167 155-335 21-187 (263)
104 3ogk_B Coronatine-insensitive 99.6 2.5E-17 8.6E-22 163.9 1.3 88 268-355 432-525 (592)
105 2v70_A SLIT-2, SLIT homolog 2 99.6 4.1E-15 1.4E-19 128.5 15.0 66 268-333 101-166 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4E-19 125.7 15.7 110 249-358 57-168 (220)
107 3ogk_B Coronatine-insensitive 99.6 9.5E-17 3.3E-21 159.7 2.7 269 96-374 214-527 (592)
108 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4E-19 125.6 15.0 113 199-333 52-165 (220)
109 1dce_A Protein (RAB geranylger 99.6 1.2E-18 4.1E-23 171.4 -12.5 191 151-360 347-550 (567)
110 2v9t_B SLIT homolog 2 protein 99.6 2.7E-14 9.1E-19 123.4 16.1 132 203-356 32-165 (220)
111 3e6j_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 123.5 16.7 131 203-356 40-172 (229)
112 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.7E-19 135.0 15.0 173 134-333 21-202 (361)
113 1xeu_A Internalin C; cellular 99.6 2.9E-15 9.9E-20 133.2 9.2 146 131-310 41-186 (263)
114 3e6j_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 122.5 16.8 150 134-309 22-172 (229)
115 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.8E-19 135.0 13.2 168 105-284 21-201 (361)
116 1dce_A Protein (RAB geranylger 99.6 3.5E-17 1.2E-21 160.9 -4.7 191 131-350 349-567 (567)
117 1w8a_A SLIT protein; signaling 99.5 1.2E-13 4.1E-18 116.6 13.8 130 230-360 11-143 (192)
118 2p1m_B Transport inhibitor res 99.5 5.5E-16 1.9E-20 154.2 -1.6 106 249-355 372-493 (594)
119 2wfh_A SLIT homolog 2 protein 99.5 2.2E-13 7.5E-18 115.0 14.6 126 230-356 13-139 (193)
120 2ell_A Acidic leucine-rich nuc 99.5 7.7E-14 2.6E-18 115.1 10.4 136 202-361 23-164 (168)
121 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.7E-18 113.6 11.0 141 173-338 21-165 (168)
122 4b8c_D Glucose-repressible alc 99.5 6.2E-15 2.1E-19 149.3 3.2 147 151-330 222-369 (727)
123 2je0_A Acidic leucine-rich nuc 99.5 6.6E-14 2.2E-18 113.1 8.6 128 202-352 16-149 (149)
124 2p1m_B Transport inhibitor res 99.5 1E-15 3.6E-20 152.2 -5.1 34 249-282 289-324 (594)
125 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 108.4 13.5 128 230-358 10-139 (177)
126 1a9n_A U2A', U2A'; complex (nu 99.4 4.3E-13 1.5E-17 111.5 9.3 103 250-354 43-151 (176)
127 2je0_A Acidic leucine-rich nuc 99.4 2.9E-13 1E-17 109.2 8.0 130 174-328 15-148 (149)
128 1w8a_A SLIT protein; signaling 99.4 1.4E-12 4.8E-17 110.0 12.3 99 134-236 11-111 (192)
129 4b8c_D Glucose-repressible alc 99.4 4.9E-13 1.7E-17 135.5 8.5 142 218-362 215-360 (727)
130 2wfh_A SLIT homolog 2 protein 99.4 1.3E-11 4.4E-16 104.1 13.9 100 134-237 13-112 (193)
131 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.1E-16 113.5 14.1 256 101-374 24-325 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.3 3.7E-12 1.3E-16 105.8 9.4 82 151-238 17-99 (176)
133 3g39_A Variable lymphocyte rec 99.3 2.4E-11 8E-16 100.3 11.4 101 253-355 13-114 (170)
134 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 100.5 11.3 102 252-355 15-117 (174)
135 2o6r_A Variable lymphocyte rec 99.3 1E-10 3.5E-15 97.1 14.6 110 203-334 28-138 (177)
136 1ds9_A Outer arm dynein; leuci 99.2 1.2E-13 4.1E-18 117.3 -5.8 125 222-349 43-180 (198)
137 4fdw_A Leucine rich hypothetic 99.2 2.7E-09 9.2E-14 100.3 20.6 212 131-355 135-357 (401)
138 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 93.4 11.7 105 229-334 11-116 (170)
139 3sb4_A Hypothetical leucine ri 99.1 1.4E-10 4.9E-15 106.3 10.3 231 131-376 25-303 (329)
140 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 93.0 11.6 107 230-337 15-122 (174)
141 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.1E-17 111.0 -5.1 133 165-326 37-180 (198)
142 4fdw_A Leucine rich hypothetic 99.1 8.3E-09 2.9E-13 96.9 20.4 236 95-352 129-379 (401)
143 2ifg_A High affinity nerve gro 99.0 1E-09 3.6E-14 101.3 10.3 101 231-333 12-116 (347)
144 3un9_A NLR family member X1; l 99.0 4.4E-11 1.5E-15 111.4 -0.4 85 271-355 154-251 (372)
145 3un9_A NLR family member X1; l 98.9 6.2E-11 2.1E-15 110.4 -4.2 70 264-333 175-252 (372)
146 2ifg_A High affinity nerve gro 98.8 4E-08 1.4E-12 90.6 11.0 103 207-311 12-118 (347)
147 2ra8_A Uncharacterized protein 98.7 9.8E-09 3.4E-13 94.8 5.3 61 294-354 250-318 (362)
148 4fs7_A Uncharacterized protein 98.6 4.5E-06 1.5E-10 78.2 20.0 261 91-374 60-370 (394)
149 2ra8_A Uncharacterized protein 98.6 2.2E-08 7.5E-13 92.5 3.9 164 168-354 164-341 (362)
150 4fs7_A Uncharacterized protein 98.4 1E-05 3.6E-10 75.7 16.7 223 131-374 162-392 (394)
151 4h09_A Hypothetical leucine ri 98.3 0.00026 8.9E-09 65.7 24.4 63 92-163 59-123 (379)
152 4gt6_A Cell surface protein; l 98.3 9.2E-05 3.1E-09 69.2 21.2 100 268-374 261-361 (394)
153 1io0_A Tropomodulin; LRR prote 98.3 4.8E-07 1.6E-11 75.3 4.1 116 223-354 32-162 (185)
154 4gt6_A Cell surface protein; l 98.2 0.00026 9E-09 66.1 22.5 117 249-375 265-383 (394)
155 3e4g_A ATP synthase subunit S, 98.2 7.8E-07 2.7E-11 72.5 3.9 84 272-356 61-152 (176)
156 1io0_A Tropomodulin; LRR prote 98.0 9.7E-07 3.3E-11 73.4 0.7 116 201-333 34-164 (185)
157 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.1E-11 70.0 1.8 88 153-242 61-154 (176)
158 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.3E-10 69.7 5.8 80 269-349 167-257 (267)
159 3rw6_A Nuclear RNA export fact 97.6 6.5E-05 2.2E-09 65.8 5.4 82 293-375 167-256 (267)
160 4h09_A Hypothetical leucine ri 97.5 0.015 5.3E-07 53.6 21.1 242 93-352 83-342 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00076 2.6E-08 55.8 4.5 90 264-353 62-167 (197)
162 2a5y_B CED-4; apoptosis; HET: 96.5 0.00047 1.6E-08 67.4 0.5 38 13-50 432-472 (549)
163 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0097 3.3E-07 49.2 3.4 86 268-353 37-136 (197)
164 3rfe_A Platelet glycoprotein I 94.7 0.054 1.8E-06 41.5 5.6 6 253-258 35-40 (130)
165 3sfz_A APAF-1, apoptotic pepti 94.6 0.0086 3E-07 64.3 1.1 46 4-49 404-452 (1249)
166 3rfe_A Platelet glycoprotein I 94.5 0.081 2.8E-06 40.5 6.3 55 253-309 12-68 (130)
167 1z6t_A APAF-1, apoptotic prote 87.0 0.16 5.5E-06 49.8 0.9 37 9-45 409-448 (591)
168 1vt4_I APAF-1 related killer D 85.9 0.14 4.8E-06 53.0 -0.2 34 10-43 403-437 (1221)
169 2lz0_A Uncharacterized protein 33.6 50 0.0017 23.3 4.1 38 198-236 15-52 (100)
170 2lz0_A Uncharacterized protein 33.0 71 0.0024 22.5 4.8 37 292-329 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.9e-29 Score=257.13 Aligned_cols=258 Identities=20% Similarity=0.202 Sum_probs=160.3
Q ss_pred CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.. .+.+| ..+.++++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p--~~l~~l~~L~~ 494 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIP--SGLSNCTNLNW 494 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCC--GGGGGCTTCCE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCC--HHHhcCCCCCE
Confidence 44555555555443 333333 3455555555555544 2444455555555555555421 11222 13444555555
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc-ccC-------------------
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELP------------------- 265 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~------------------- 265 (403)
|++++|.+.+.+|..++.+++|+.|++++|...+.+|.... ++|+.|++++|.++ .+|
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 55555555555555555555555555555554444444433 55555555555443 333
Q ss_pred ---------------------------------------------------hhhhCCCCCCEEecccCcCCCcCCccccC
Q 015671 266 ---------------------------------------------------SSIESLLRLEYLDLSDCKRLKSLPSSLCK 294 (403)
Q Consensus 266 ---------------------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 294 (403)
..++.+++|+.|++++|.+.+.+|..+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 23445678999999999999999999999
Q ss_pred CCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCC-------eEec
Q 015671 295 LKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSP-------LFLA 366 (403)
Q Consensus 295 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-------~l~i 366 (403)
++.|+.|++++|.+.+.+|..++++++|+.|++++|.++ .+|..+..+++|+.|++++|+..+.+|.. ...+
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 999999999999999999999999999999999999999 89999999999999999999999999973 3345
Q ss_pred cCCCCCCC-----ch-hhhccccccCCCcch
Q 015671 367 RGCLAMQP-----FL-GIVEHTHRIPHIDHM 391 (403)
Q Consensus 367 ~~c~~l~~-----~~-~~~~~~~~~~~~~~~ 391 (403)
.++|.|-. |. ...++|++++|+|+.
T Consensus 735 ~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 735 LNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CSCTEEESTTSCCCCSCC-------------
T ss_pred cCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 55555443 33 345799999998875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.3e-27 Score=241.03 Aligned_cols=267 Identities=19% Similarity=0.223 Sum_probs=195.1
Q ss_pred cChhhhcCCCCCcEEEEeccCCCCCCccccc-------------------ccCCCCC---CCeeEEEecCCCCC-CCCCC
Q 015671 93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMS-------------------YLQDPGF---AEVKYLHWHGYPLK-SFPSN 149 (403)
Q Consensus 93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-------------------~~~~l~~---~~L~~L~l~~~~~~-~lp~~ 149 (403)
+....|..+++|++|++++|.+.|..|.... .+..+.. ++|++|++++|.+. .+|..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 3345588888999999988877543332111 1111111 34666666666554 44554
Q ss_pred C-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCC
Q 015671 150 L-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLE 227 (403)
Q Consensus 150 ~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (403)
+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.. .+.+|. .+..+++|++|++++|.+.+.+|..++.++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-CSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-cCcCCH--HHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 5 5667777777777666 3566677777777777777632 223332 566677888888888887777887788888
Q ss_pred CCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccc------------
Q 015671 228 FLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSL------------ 292 (403)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------ 292 (403)
+|+.|++++|...+.+|..+. ++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 888888888877777777665 88888888888887 778888888888888888888776666432
Q ss_pred ----------------------------------------------------------cCCCCCcEEeecCCCCCcccCc
Q 015671 293 ----------------------------------------------------------CKLKSLGVLNLYGCSNLQRLPE 314 (403)
Q Consensus 293 ----------------------------------------------------------~~l~~L~~L~l~~~~~~~~~~~ 314 (403)
+.+++|+.|++++|.+.+.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 2346788899999888888998
Q ss_pred ccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 315 CLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 315 ~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
.++++++|+.|++++|.++ .+|..++.+++|+.|++++|+..+.+|..
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 8999999999999999998 88888999999999999999888888874
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.4e-26 Score=220.67 Aligned_cols=294 Identities=17% Similarity=0.142 Sum_probs=213.7
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-C
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-S 151 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~ 151 (403)
..++.+.+ +......+.+..|.++++|++|++++|.+.+ .+ +..+.. ++|++|++++|.+..+ |..+ .
T Consensus 30 ~~l~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDL--SLNSIAELNETSFSRLQDLQFLKVEQQTPGL------VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEEC--CSSCCCEECTTTTSSCTTCCEEECCCCSTTC------EECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEe--cCCccCcCChhHhccCccccEEECcCCcccc------eECcccccccccCCEEeCCCCccCccChhhccC
Confidence 44555444 3333345567788999999999999987642 22 344555 8999999999998876 5556 6
Q ss_pred CCCceEEEccCCCccc-ccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCC---
Q 015671 152 AEKLVLFEVPENDIEQ-LWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN--- 225 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~-l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--- 225 (403)
+++|++|++++|.+.. ++. .+..+++|++|++++|. +. .+.....+.++++|++|++++|.+.+..+..+..
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CC-SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cC-ccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 8999999999999885 343 38889999999999983 33 2221122677888999999988876655544433
Q ss_pred -------------------------------CCCCCEEeecCCCCCCCCccc----------------------------
Q 015671 226 -------------------------------LEFLTKLDLSGCSKLKRLPEI---------------------------- 246 (403)
Q Consensus 226 -------------------------------l~~L~~L~l~~~~~~~~~~~~---------------------------- 246 (403)
+++|+.|++++|...+..|..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 356788888776543211110
Q ss_pred -------------ccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc
Q 015671 247 -------------SSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL 312 (403)
Q Consensus 247 -------------~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 312 (403)
..++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 014788888888888854 566788999999999999988777878888999999999998887777
Q ss_pred CcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671 313 PECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT 382 (403)
Q Consensus 313 ~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~ 382 (403)
+..+..+++|+.|++++|.++.+ |..+..+++|++|++++|... .+|... +..+++|+.+....+.+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTT--TTTCTTCCEEECCSSCB
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhH--hccCCcccEEEccCCCc
Confidence 88888999999999999999855 677888999999999998655 455431 35667777655444433
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-26 Score=213.96 Aligned_cols=223 Identities=23% Similarity=0.301 Sum_probs=166.0
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK 177 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 177 (403)
..++++.|++++|.+. .+|..+.. ++|++|++++|.+..+|..+ .+++|++|++++|.+..+|..+..+++
T Consensus 79 ~~~~l~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESSCCS-------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred cccceeEEEccCCCch-------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 4578889999888773 56666666 88888888888888888776 688888888888888888888888888
Q ss_pred CcEeecccccCccccCCCC-------CCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCC
Q 015671 178 LNQIIHAVCHRLIAKTPNP-------TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGN 250 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 250 (403)
|++|++++|.... .+|.. ..+.++++|++|++++|.+. .+|..++.+++|+.|++++
T Consensus 152 L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~-------------- 215 (328)
T 4fcg_A 152 LRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN-------------- 215 (328)
T ss_dssp CCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES--------------
T ss_pred CCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC--------------
Confidence 8888888875444 55431 01222555555555555433 4444455555555555544
Q ss_pred CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671 251 ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET 330 (403)
Q Consensus 251 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 330 (403)
|.++.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 216 --------N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 216 --------SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp --------SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred --------CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 555567777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCc-ccChhhhcCCCCCEEeccCC
Q 015671 331 NIE-RIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 331 ~l~-~l~~~~~~~~~L~~L~l~~c 353 (403)
.+. .+|..++.+++|+.+.+..+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CchhhccHHHhhccCceEEeCCHH
Confidence 766 78888888888888888765
No 5
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=9.8e-26 Score=221.21 Aligned_cols=283 Identities=18% Similarity=0.146 Sum_probs=182.9
Q ss_pred CCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCC
Q 015671 86 SKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEND 164 (403)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~ 164 (403)
+......+.+..|..+++|++|++++|.+.+ ..+..+.. ++|++|++++|.++.+|.. .+++|++|++++|.
T Consensus 29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 29 SQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNA 101 (520)
T ss_dssp CSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSC
T ss_pred CCCcccccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCc
Confidence 3333334556677778888888888777641 22445555 7777777777777777766 67777777777777
Q ss_pred ccc--cccccccCCCCcEeecccccCcc------------------------ccCCCCCCCCC-----------------
Q 015671 165 IEQ--LWDCVKHYSKLNQIIHAVCHRLI------------------------AKTPNPTLMPR----------------- 201 (403)
Q Consensus 165 ~~~--l~~~~~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~----------------- 201 (403)
+.. +|..++.+++|++|++++|.... +..| ..+..
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEEEECCSSSCCC
T ss_pred cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccc--ccccccccceEEEEeccCcchh
Confidence 765 45677777777777776653110 0001 11111
Q ss_pred ---------C---------------------------------------------------------CCCcEEEecCCCC
Q 015671 202 ---------L---------------------------------------------------------NKVVILNLRGSKS 215 (403)
Q Consensus 202 ---------l---------------------------------------------------------~~L~~L~l~~~~~ 215 (403)
+ ++|++|++++|.+
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 1 1455555555544
Q ss_pred CCccCccC-----------------------------------------------------CCCCCCCEEeecCCCCCCC
Q 015671 216 LKSLPSEI-----------------------------------------------------FNLEFLTKLDLSGCSKLKR 242 (403)
Q Consensus 216 ~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~~~~~~~ 242 (403)
.+.+|..+ ..+++|++|++++|...+.
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence 44444433 4566677777777665554
Q ss_pred Cccccc--CCCcEEEecCccCcc---cChhhhCCCCCCEEecccCcCCCcCCcc-ccCCCCCcEEeecCCCCCcccCccc
Q 015671 243 LPEISS--GNISWLFLTGTAIKE---LPSSIESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGCSNLQRLPECL 316 (403)
Q Consensus 243 ~~~~~~--~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l 316 (403)
.|..+. ++|++|++++|.++. +|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 554443 777777777777763 3455677777888888877766655553 5667788888888877776666554
Q ss_pred CCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671 317 GQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT 382 (403)
Q Consensus 317 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~ 382 (403)
. ++|+.|++++|.++.+|..+..+++|+.|++++|+.. .+|.. .+..+++|+.+....+.+
T Consensus 420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~--~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDG--IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCB
T ss_pred c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHH--HhccCCcccEEECcCCCC
Confidence 3 6888888888888888888888889999999888654 67764 345667776654444433
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.7e-25 Score=215.86 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=204.3
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC-CCC-CCC-CCCCceEEEccCCCcccc-ccccccCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SFP-SNL-SAEKLVLFEVPENDIEQL-WDCVKHYS 176 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~lp-~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~ 176 (403)
++|++|++++|.+. ...+..+.. ++|++|++++|.+. .++ ..+ .+++|++|++++|.+..+ |..++.++
T Consensus 30 ~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccC------cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 78999999999874 233566666 99999999999875 554 445 799999999999999876 67899999
Q ss_pred CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc-CCCCCCCCEEeecCCCCCCCCccccc-------
Q 015671 177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE-IFNLEFLTKLDLSGCSKLKRLPEISS------- 248 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~------- 248 (403)
+|++|++++|. +.+.++....+.++++|++|++++|.+.+..|.. +..+++|++|++++|......+....
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 99999999993 3313343345889999999999999977776765 78999999999999875554433211
Q ss_pred -----------------------------CCCcEEEecCccCcc-cChhhh-----------------------------
Q 015671 249 -----------------------------GNISWLFLTGTAIKE-LPSSIE----------------------------- 269 (403)
Q Consensus 249 -----------------------------~~L~~L~l~~~~~~~-l~~~~~----------------------------- 269 (403)
++|++|++++|.++. .|..+.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 467888888877652 222211
Q ss_pred ----------CCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-Chh
Q 015671 270 ----------SLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PES 338 (403)
Q Consensus 270 ----------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~ 338 (403)
..++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+ |..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 125899999999998888888899999999999999999888888999999999999999999965 567
Q ss_pred hhcCCCCCEEeccCCcCCCcCCCC
Q 015671 339 IIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 339 ~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
+..+++|+.|++++|...+..|..
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTT
T ss_pred hcCcccCCEEECCCCcccccChhh
Confidence 899999999999999876665653
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.9e-26 Score=234.51 Aligned_cols=260 Identities=17% Similarity=0.180 Sum_probs=174.1
Q ss_pred hhhhcCCCCCcEEEEeccC-CCC-CCccccccc-CCCCC-CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCccc
Q 015671 95 PSTFTKMPKLRFLKFYSSS-FNG-ENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIEQ 167 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~-~~~-~~~~~~~~~-~~l~~-~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~~ 167 (403)
|..|.++++|++|++++|. +.| ..|...... ..+.. ++|++|++++|.+..+|. .+ .+++|++|++++|.+..
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc
Confidence 5667777777777777776 543 222211111 12223 578888888877777777 44 67778888888887777
Q ss_pred cccccccCCCCcEeecccccCccccCCCCCCCCCCCC-CcEEEecCCCCCCccCccCCCCCC--CCEEeecCCCCCCCCc
Q 015671 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK-VVILNLRGSKSLKSLPSEIFNLEF--LTKLDLSGCSKLKRLP 244 (403)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~ 244 (403)
+| .++.+++|+.|++++|. +. .+|. .+.++++ |+.|++++|.+. .+|..+..++. |+.|++++|...+..|
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~-l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQ-IE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CC-CCCTTSEESEEECCSSC-CS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ch-hhcCCCcceEEECcCCc-cc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 77 77777788888887773 33 4442 4666777 788888877754 66666655543 7777777776655444
Q ss_pred cccc-------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccC--------CCCCcEEeecCCCC
Q 015671 245 EISS-------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCK--------LKSLGVLNLYGCSN 308 (403)
Q Consensus 245 ~~~~-------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~ 308 (403)
.... ++|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..+.. +++|+.|+|++|.+
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 3321 47778888888887777665 36778888888887755 55554332 23788888887766
Q ss_pred CcccCcccC--CCCCCCEEEccCCCCcccChhhhcCCCCCEEeccC------CcCCCcCCCC
Q 015671 309 LQRLPECLG--QLSSPITLGLTETNIERIPESIIQHFVLRYLLLSY------SERLQSLPSP 362 (403)
Q Consensus 309 ~~~~~~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~~lp~~ 362 (403)
. .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|++++ |...+.+|..
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 5 6666665 77788888888888777777777777888887765 5556666653
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.2e-27 Score=216.42 Aligned_cols=251 Identities=15% Similarity=0.167 Sum_probs=179.0
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCCcc-ccccccccCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYS 176 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~ 176 (403)
.+++.|+++++.+.|. ..+|..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+. .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5778888888877531 134455555 7888888874 6654 566666 6788888888888887 5677788888
Q ss_pred CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCC-CCCEEeecCCCCCCCCccccc-CCCcEE
Q 015671 177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLE-FLTKLDLSGCSKLKRLPEISS-GNISWL 254 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~-~~L~~L 254 (403)
+|++|++++|. +.+.+| ..+.++++|++|++++|.+.+.+|..++.++ +|+.|++++|...+..|..+. ..|+.|
T Consensus 126 ~L~~L~Ls~N~-l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L 202 (313)
T 1ogq_A 126 TLVTLDFSYNA-LSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202 (313)
T ss_dssp TCCEEECCSSE-EESCCC--GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred CCCEEeCCCCc-cCCcCC--hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence 88888888873 221333 3566778888888888877667777777777 788888888765555555544 447778
Q ss_pred EecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 255 FLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 255 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
++++|.++ ..|..+..+++|+.|++++|.+.+.+|. +..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 88777776 3445667778888888888776655554 666778888888887777777777778888888888888877
Q ss_pred -ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 334 -RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 334 -~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
.+|.. ..+++|+.|++++|+.+...|.
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred ccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 56654 6777788888888876555443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.3e-25 Score=224.41 Aligned_cols=268 Identities=17% Similarity=0.120 Sum_probs=181.9
Q ss_pred CCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEcc
Q 015671 85 MSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVP 161 (403)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~ 161 (403)
+.......+.+..|..+++|++|++++|.+. .+|..+.. ++|++|++++|.+..+ |..+ .+++|++|+++
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 3333334445566777777777877777662 45556665 7777777777777766 3334 57777777777
Q ss_pred CCCcc-cccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC
Q 015671 162 ENDIE-QLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK 239 (403)
Q Consensus 162 ~~~~~-~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 239 (403)
+|.+. .++. .+..+++|++|++++|.... .......+..+++|++|++++|.+.+..|..++.+++|+.|++++|..
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 77765 4443 46777778888777773221 211123567777788888887776666666677778888888877765
Q ss_pred CCCCccc-cc--CCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCc---CCccccCCCCCcEEeecCCCCCccc
Q 015671 240 LKRLPEI-SS--GNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKS---LPSSLCKLKSLGVLNLYGCSNLQRL 312 (403)
Q Consensus 240 ~~~~~~~-~~--~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~ 312 (403)
....+.. +. ++|+.|++++|.++.. |..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 5444432 22 7788888888777744 45567778888888888876552 2245677788888888888777777
Q ss_pred CcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 313 PECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 313 ~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
|..+..+++|+.|++++|.++ ..|..+..++.| .|++++|...+..|.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 777788888888888888877 455677777888 888888876654444
No 10
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.8e-25 Score=217.72 Aligned_cols=290 Identities=17% Similarity=0.115 Sum_probs=208.2
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCC
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEK 154 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~ 154 (403)
..++.+. ++......+.+..|..+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+|.. .+++
T Consensus 52 ~~L~~L~--Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~ 122 (562)
T 3a79_B 52 PRTKALS--LSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMAS 122 (562)
T ss_dssp TTCCEEE--CCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTT
T ss_pred CCcCEEE--CCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-cccc
Confidence 3455543 4444444566788999999999999999874 223455666 9999999999999999887 8999
Q ss_pred ceEEEccCCCccccc--cccccCCCCcEeecccccCccccCCCCCCCCCC------------------------------
Q 015671 155 LVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL------------------------------ 202 (403)
Q Consensus 155 L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l------------------------------ 202 (403)
|++|++++|.+..++ ..++++++|++|++++|.... ..+..+.++
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 999999999998764 688999999999998874211 000111111
Q ss_pred ----------------------------------------------------------------------------CCCc
Q 015671 203 ----------------------------------------------------------------------------NKVV 206 (403)
Q Consensus 203 ----------------------------------------------------------------------------~~L~ 206 (403)
++|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 1344
Q ss_pred EEEecCCCCCCccCccC-----------------------------------------------------CCCCCCCEEe
Q 015671 207 ILNLRGSKSLKSLPSEI-----------------------------------------------------FNLEFLTKLD 233 (403)
Q Consensus 207 ~L~l~~~~~~~~~~~~~-----------------------------------------------------~~l~~L~~L~ 233 (403)
+|++++|.+.+.+|..+ +.+++|+.|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 359 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence 45555444444444433 5667788888
Q ss_pred ecCCCCCCCCccccc--CCCcEEEecCccCcccC---hhhhCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCC
Q 015671 234 LSGCSKLKRLPEISS--GNISWLFLTGTAIKELP---SSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCS 307 (403)
Q Consensus 234 l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 307 (403)
+++|...+..|..+. ++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 888766665555444 78888888888887654 4567888888888888887775655 36678888888888888
Q ss_pred CCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671 308 NLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT 382 (403)
Q Consensus 308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~ 382 (403)
+.+.+|..+. ++|+.|++++|.++.+|..+..+++|+.|++++|... .+|.. .+..+++|+.+....+.+
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~--~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG--VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT--STTTCTTCCCEECCSCCB
T ss_pred CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH--HHhcCCCCCEEEecCCCc
Confidence 7776665443 6899999999999999988889999999999998755 67764 345677777755544443
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=216.47 Aligned_cols=269 Identities=18% Similarity=0.148 Sum_probs=169.3
Q ss_pred ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC--CCC
Q 015671 77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL--SAE 153 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~--~l~ 153 (403)
.++.+. ++......+.+..|..+++|++|++++|.+. ...+..+.. ++|++|++++|.+..+|... .++
T Consensus 33 ~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 33 ETRLLD--LGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TCSEEE--CCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCcEEE--CCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 344433 3333334455677888888888888888764 223455666 88888888888888887543 688
Q ss_pred CceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671 154 KLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL 232 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (403)
+|++|++++|.+..+ +..+..+++|++|++++|. +. .++ ...+.++++|++|++++|.+....+..+..+++|+.|
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LV-YIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CC-EEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCc-cc-eeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 888888888888765 4567788888888888773 22 121 2345666666777776665433322334444455555
Q ss_pred eec------------------------CCCCCCCCccccc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCC
Q 015671 233 DLS------------------------GCSKLKRLPEISS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRL 285 (403)
Q Consensus 233 ~l~------------------------~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 285 (403)
+++ +|.....++.... .+|+.|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 444 4444444333322 466666666666666663 4566666777777766655
Q ss_pred CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671 286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 356 (403)
+..+..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555556666677777777666666666666666777777777776665554 3455666777777666543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=6.8e-26 Score=227.14 Aligned_cols=246 Identities=15% Similarity=0.120 Sum_probs=138.5
Q ss_pred CCCcEEEEeccCCCCCCcccccccC--CCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCccccccccccCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQ--DPGF-AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYS 176 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~--~l~~-~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~ 176 (403)
++|++|++++|.+. .+|. .+.. ++|++|++++|.+. .+| .+ .+++|++|++++|.+..+|..+..++
T Consensus 305 ~~L~~L~L~~n~l~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 376 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376 (636)
T ss_dssp GTCCEEECCSSCCS-------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEEC
T ss_pred CCCCEEECCCCcCC-------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhc
Confidence 66666666666652 3444 4444 66666666666666 666 34 56666666666666666666666666
Q ss_pred C-CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC-------CCCCCCEEeecCCCCCCCCccccc
Q 015671 177 K-LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-------NLEFLTKLDLSGCSKLKRLPEISS 248 (403)
Q Consensus 177 ~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~ 248 (403)
+ |++|++++| .+. .+|.......+++|+.|++++|.+.+..|..+. .+++|+.|++++|... .+|....
T Consensus 377 ~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 453 (636)
T 4eco_A 377 EQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELF 453 (636)
T ss_dssp TTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHH
T ss_pred ccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHH
Confidence 6 666666666 233 444311111233566666666666555555554 5556666666664433 4443322
Q ss_pred ---CCCcEEEecCccCcccChhhhCC--------CCCCEEecccCcCCCcCCcccc--CCCCCcEEeecCCCCCcccCcc
Q 015671 249 ---GNISWLFLTGTAIKELPSSIESL--------LRLEYLDLSDCKRLKSLPSSLC--KLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 249 ---~~L~~L~l~~~~~~~l~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
++|++|++++|.++.+|..+... ++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..
T Consensus 454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 55666666666666555433221 15666666666544 4555554 56666666666655555 5555
Q ss_pred cCCCCCCCEEEcc------CCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 316 LGQLSSPITLGLT------ETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 316 l~~l~~L~~L~l~------~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+..+++|+.|+++ +|.+. .+|..+..+++|+.|++++|.. +.+|.
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 5566666666663 33333 5555566666666666666655 55555
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.6e-26 Score=231.66 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=187.1
Q ss_pred hhhhcCCCCCcEEEEeccC-CCC-CCcccccccCCCCC-CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCcc-c
Q 015671 95 PSTFTKMPKLRFLKFYSSS-FNG-ENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIE-Q 167 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~-~~~-~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~-~ 167 (403)
|..|.++++|++|++++|. +.| ..|........+.. ++|++|++++|.++.+|. .+ .+++|++|++++|.+. .
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 4555666666666666665 432 22211111001111 567777777777666766 44 5677777777777776 5
Q ss_pred cccccccCCCCcEeecccccCccccCCCCCCCCCCCC-CcEEEecCCCCCCccCccCCCCC--CCCEEeecCCCCCCCCc
Q 015671 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK-VVILNLRGSKSLKSLPSEIFNLE--FLTKLDLSGCSKLKRLP 244 (403)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~ 244 (403)
+| .+..+++|+.|++++| .+. .+|. .+.++++ |++|++++|.+. .+|..++.++ +|+.|++++|...+..|
T Consensus 346 ip-~~~~l~~L~~L~L~~N-~l~-~lp~--~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYN-QIT-EIPA--NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CC-CCEEEEEESEEECCSS-EEE-ECCT--TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred hh-hhCCCCCCCEEECCCC-ccc-cccH--hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 66 6667777777777776 333 4443 4667777 888888887755 6777665544 78888888877666555
Q ss_pred cccc---------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccC--------CCCCcEEeecCC
Q 015671 245 EISS---------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCK--------LKSLGVLNLYGC 306 (403)
Q Consensus 245 ~~~~---------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~ 306 (403)
..+. .+|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..... +++|+.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 4322 58889999999999888765 45899999999999876 66654332 238999999998
Q ss_pred CCCcccCcccC--CCCCCCEEEccCCCCcccChhhhcCCCCCEEecc------CCcCCCcCCCCeEeccCCCCCCC
Q 015671 307 SNLQRLPECLG--QLSSPITLGLTETNIERIPESIIQHFVLRYLLLS------YSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 307 ~~~~~~~~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~------~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
.+. .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+++ +|...+.+|.. +..|++|+.
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---l~~l~~L~~ 570 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG---ITLCPSLTQ 570 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---GGGCSSCCE
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH---HhcCCCCCE
Confidence 877 6887776 8999999999999999999999999999999994 56667788875 234455554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.4e-25 Score=222.52 Aligned_cols=270 Identities=21% Similarity=0.176 Sum_probs=174.4
Q ss_pred ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCC
Q 015671 77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAE 153 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~ 153 (403)
.++.+. ++......+.+..|.++++||+|++++|.+. ...+..+.. ++|++|++++|.+..+ |..+ .++
T Consensus 34 ~l~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLE--FSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TCCEEE--CTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcEEE--ccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 445544 3444444556778899999999999998764 233556666 8899999999888766 4455 688
Q ss_pred CceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC--
Q 015671 154 KLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT-- 230 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~-- 230 (403)
+|++|++++|.+..+ +..++.+++|++|++++|. +. .++. ..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-IS-SIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CC-CCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCc-cc-ccCc-ccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999988887 5678888999999998883 33 2221 2333477888888888776554455556666666
Q ss_pred EEeecCCCCCCCC-------------------------------------------------------------------
Q 015671 231 KLDLSGCSKLKRL------------------------------------------------------------------- 243 (403)
Q Consensus 231 ~L~l~~~~~~~~~------------------------------------------------------------------- 243 (403)
.|++++|...+..
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 5666554322111
Q ss_pred -------ccc-cc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccC
Q 015671 244 -------PEI-SS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP 313 (403)
Q Consensus 244 -------~~~-~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 313 (403)
+.. +. ++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 111 11 56666777766666666666666777777777766555555556666666666666665554444
Q ss_pred c-ccCCCCCCCEEEccCCCCccc---ChhhhcCCCCCEEeccCCcCCC
Q 015671 314 E-CLGQLSSPITLGLTETNIERI---PESIIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 314 ~-~l~~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l~~c~~l~ 357 (403)
. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|...+
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 3 255666666666666666533 4445566666666666665443
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.3e-25 Score=215.09 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=161.2
Q ss_pred cChhhhcCCCCCcEEEEeccCCCCCCcccccccCC-CCC-CCeeEEEecCCCCCCCC-C---------------------
Q 015671 93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSFP-S--------------------- 148 (403)
Q Consensus 93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~~~~lp-~--------------------- 148 (403)
+.+..|.++++|++|++++|.+. .++.. +.. ++|++|++++|.+..++ .
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred eChhhhhCCccCCEEECCCCcCC-------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 44556666666777777666553 22222 222 45555555555444332 2
Q ss_pred ---CC-CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC
Q 015671 149 ---NL-SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI 223 (403)
Q Consensus 149 ---~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 223 (403)
.+ .+++|++|++++|.+..++. .+..+++|+.|++++|. +. .++ ...+.++++|+.|++++|...+.++...
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~-~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-IN-AIR-DYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CC-EEC-TTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-Cc-EeC-hhhcccCcccceeeCCCCccccccCccc
Confidence 22 34455555555555544432 34555555555555552 22 121 2356778888999998888888888777
Q ss_pred CCCCCCCEEeecCCCCCCCCccc-cc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCc
Q 015671 224 FNLEFLTKLDLSGCSKLKRLPEI-SS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLG 299 (403)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~-~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 299 (403)
....+|+.|++++|.. +.+|.. +. ++|+.|++++|.++.++. .+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 221 ~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 221 LYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred ccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 6777999999999754 455532 22 899999999999997764 578899999999999998888888899999999
Q ss_pred EEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 300 VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 300 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999998887777778999999999999999883
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1e-24 Score=206.16 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=186.9
Q ss_pred ecChhhhcCCCCCcEEEEeccCCCCCCccccccc-CCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccc
Q 015671 92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQ 167 (403)
Q Consensus 92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~ 167 (403)
.+....|..+++|++|++++|.+. .++ ..+.. ++|++|++++|.+..++.. + .+++|++|++++|.+..
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIE-------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCC-------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred hCChhHhcccccCcEEECCCCccc-------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence 345566788899999999988763 333 35555 8899999999888887544 4 68889999999998888
Q ss_pred cccc-cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC-------
Q 015671 168 LWDC-VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK------- 239 (403)
Q Consensus 168 l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------- 239 (403)
+|.. +..+++|++|++++|. +. .++ ...+.++++|++|++++|.+... + ++.+++|+.|++++|..
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNN-LE-RIE-DDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CC-BCC-TTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCS
T ss_pred CCHHHhcCCCCCcEEECCCCc-cC-ccC-hhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCC
Confidence 8765 5788999999998883 33 222 23577888889999988875433 2 33455555555554321
Q ss_pred -----------CCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671 240 -----------LKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN 308 (403)
Q Consensus 240 -----------~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 308 (403)
+..+|....++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred cceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 2222332236778888888777765 4677888888888888887777777788888888888888766
Q ss_pred CcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671 309 LQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
.+ ++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. .+| +..+++|+.
T Consensus 285 ~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~-----~~~~~~L~~ 343 (390)
T 3o6n_A 285 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK-----LSTHHTLKN 343 (390)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-CCC-----CCTTCCCSE
T ss_pred cc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc-eeC-----chhhccCCE
Confidence 54 455567788888888888888888877888888888888888653 333 334555554
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-25 Score=206.42 Aligned_cols=225 Identities=22% Similarity=0.326 Sum_probs=182.9
Q ss_pred CCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CC
Q 015671 75 TEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SA 152 (403)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l 152 (403)
...++.+.+....+. ..+..+.++++|++|++++|.+. .+|..+.. ++|++|++++|.+..+|..+ .+
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~-------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-------ELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCC-------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCcc-------chhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 456667666555544 22455777999999999999873 56677777 99999999999999999877 79
Q ss_pred CCceEEEccCCCc-cccccccc---------cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc
Q 015671 153 EKLVLFEVPENDI-EQLWDCVK---------HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE 222 (403)
Q Consensus 153 ~~L~~L~l~~~~~-~~l~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 222 (403)
++|++|++++|.+ ..+|..+. .+++|++|++++| .+. .+|. .+.++++|++|++++|.+. .+|+.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~--~l~~l~~L~~L~L~~N~l~-~l~~~ 224 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPA--SIANLQNLKSLKIRNSPLS-ALGPA 224 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCG--GGGGCTTCCEEEEESSCCC-CCCGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchH--hhcCCCCCCEEEccCCCCC-cCchh
Confidence 9999999999654 45676654 4999999999998 444 5553 5788999999999999865 57777
Q ss_pred CCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEe
Q 015671 223 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLN 302 (403)
Q Consensus 223 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 302 (403)
++.+++|+.|++++|...+. +|..++.+++|+.|++++|...+.+|..+.++++|+.|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~---------------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRN---------------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCB---------------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred hccCCCCCEEECcCCcchhh---------------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 88999999999999765543 455677888999999999988899998888999999999
Q ss_pred ecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671 303 LYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 303 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 335 (403)
+++|+..+.+|+++..+++|+.+.+..+.+..+
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 999999999999999999999998887655433
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.6e-25 Score=226.48 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=137.1
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccC--CCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQ--DPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS 176 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~--~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 176 (403)
.+++|++|++++|.+. .+|. .+.. ++|+.|++++|.+..+|....+++|++|++++|.+..+|..+..++
T Consensus 546 ~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~ 618 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618 (876)
T ss_dssp TTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEEC
T ss_pred ccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhcc
Confidence 3446666666666652 4444 4444 6666666666666666622256666666666666666666666666
Q ss_pred C-CcEeecccccCccccCCCCCCCCCC--CCCcEEEecCCCCCCccCc---cCC--CCCCCCEEeecCCCCCCCCccccc
Q 015671 177 K-LNQIIHAVCHRLIAKTPNPTLMPRL--NKVVILNLRGSKSLKSLPS---EIF--NLEFLTKLDLSGCSKLKRLPEISS 248 (403)
Q Consensus 177 ~-L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 248 (403)
+ |+.|++++|. +. .+|. .+..+ ++|+.|++++|.+.+.+|. .++ .+++|+.|++++|... .+|....
T Consensus 619 ~~L~~L~Ls~N~-L~-~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~ 693 (876)
T 4ecn_A 619 DQVEGLGFSHNK-LK-YIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELF 693 (876)
T ss_dssp TTCCEEECCSSC-CC-SCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHH
T ss_pred ccCCEEECcCCC-CC-cCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHH
Confidence 6 6666666662 33 4443 22322 3366666666655443332 111 2335666666664433 4444322
Q ss_pred ---CCCcEEEecCccCcccChhhhCC--------CCCCEEecccCcCCCcCCcccc--CCCCCcEEeecCCCCCcccCcc
Q 015671 249 ---GNISWLFLTGTAIKELPSSIESL--------LRLEYLDLSDCKRLKSLPSSLC--KLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 249 ---~~L~~L~l~~~~~~~l~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
++|+.|++++|.++.+|..+... ++|+.|++++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence 56666666666666555443222 15666666666544 4555554 56666666666655554 5555
Q ss_pred cCCCCCCCEEEccC------CCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 316 LGQLSSPITLGLTE------TNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 316 l~~l~~L~~L~l~~------~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+..+++|+.|++++ |.+. .+|..+..+++|+.|++++|.. +.+|.
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 55666666666654 3333 5555566666666666666655 55555
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.8e-25 Score=205.74 Aligned_cols=258 Identities=15% Similarity=0.167 Sum_probs=186.9
Q ss_pred ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCc
Q 015671 77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKL 155 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L 155 (403)
.++.+.+....+..+ ..+..+++|++|++++|.+. .++. +.. ++|++|++++|.+..+|....+++|
T Consensus 45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~-------~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L 112 (347)
T 4fmz_A 45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQIT-------DISP-LSNLVKLTNLYIGTNKITDISALQNLTNL 112 (347)
T ss_dssp TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCC-------CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred cccEEEEeCCccccc----hhhhhcCCccEEEccCCccc-------cchh-hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence 445544444333222 24778899999999998874 2222 445 8899999999998888765578999
Q ss_pred eEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeec
Q 015671 156 VLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLS 235 (403)
Q Consensus 156 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (403)
++|++++|.+..++. +..+++|++|++++|.... .++ .+..+++|++|++++|.+.. ++. +..+++|+.|+++
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~~~---~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLS---PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLN 185 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-CCG---GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECT
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcc-ccc---chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEcc
Confidence 999999999888866 7889999999999885443 333 46778888999998877543 333 6788888899888
Q ss_pred CCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc
Q 015671 236 GCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE 314 (403)
Q Consensus 236 ~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 314 (403)
+|.. ..++.... ++|+.+++++|.++.++. +..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+. +
T Consensus 186 ~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 186 YNQI-EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp TSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--G
T ss_pred CCcc-cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--h
Confidence 8654 34444333 888888888888776655 67788888888888875543 33 67788888888888766543 3
Q ss_pred ccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCC
Q 015671 315 CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 315 ~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
.+..+++|+.|++++|.++.++ .+..+++|+.|++++|+..+..|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 5777888888888888888764 46777888888888887654443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-24 Score=217.18 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=188.5
Q ss_pred ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcccc
Q 015671 92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQL 168 (403)
Q Consensus 92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l 168 (403)
.+.+..|..+++|++|++++|.+.+ ..+..+.. ++|++|++++|.+..+|.. + .+++|++|++++|.+..+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 4556678888999999999888741 22335555 8899999999988888654 3 688999999999998888
Q ss_pred ccc-cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC--------
Q 015671 169 WDC-VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK-------- 239 (403)
Q Consensus 169 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------- 239 (403)
|.. ++.+++|++|++++|. +. .++ +..+.++++|++|++++|.+.+. + ++.+++|+.|++++|..
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNN-LE-RIE-DDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CC-BCC-TTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred CHHHhccCCCCCEEEeeCCc-CC-CCC-hhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCch
Confidence 765 5888999999999883 33 222 23577888899999988875443 2 33455555555554322
Q ss_pred ----------CCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 240 ----------LKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 240 ----------~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
+..++....++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 2222333336788888888888764 56788899999999999888888888888999999999997765
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 310 QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred C-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence 5 566667789999999999999988888888899999999988754
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=7e-25 Score=219.15 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=65.6
Q ss_pred ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccc-
Q 015671 92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQ- 167 (403)
Q Consensus 92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~- 167 (403)
.+.+..|.++++||+|++++|.+.+ ..|..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+..
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 143 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTGNPIQS------FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCC------CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCHHHhhchhhcCEeECCCCcccc------cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce
Confidence 3445667777777777777776642 22455656 78888888888887776 344 68888888888888874
Q ss_pred -cccccccCCCCcEeeccccc
Q 015671 168 -LWDCVKHYSKLNQIIHAVCH 187 (403)
Q Consensus 168 -l~~~~~~l~~L~~L~l~~~~ 187 (403)
+|..++++++|++|++++|.
T Consensus 144 ~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 144 KLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCGGGGTCTTCCEEECCSSC
T ss_pred echHhHhhcCCCCEEEccCCc
Confidence 67788888888888888773
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.8e-24 Score=201.11 Aligned_cols=272 Identities=15% Similarity=0.128 Sum_probs=212.1
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCC
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEK 154 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~ 154 (403)
.+++.+.+....+.. +.+ |..+++|++|++++|.+. .++ .+.. ++|++|++++|.+..++....+++
T Consensus 66 ~~L~~L~l~~n~i~~--~~~--~~~l~~L~~L~L~~n~i~-------~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~ 133 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD--ISP--LSNLVKLTNLYIGTNKIT-------DIS-ALQNLTNLRELYLNEDNISDISPLANLTK 133 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCC-------CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTT
T ss_pred CCccEEEccCCcccc--chh--hhcCCcCCEEEccCCccc-------Cch-HHcCCCcCCEEECcCCcccCchhhccCCc
Confidence 445555444333322 222 889999999999999874 222 3555 999999999999999987558999
Q ss_pred ceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEee
Q 015671 155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDL 234 (403)
Q Consensus 155 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (403)
|++|++++|.....+..+..+++|++|++++|. +.....+..+++|++|++++|.+. .++. +..+++|+.|++
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-----VKDVTPIANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTA 206 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-----CCCCGGGGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEEC
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCC-----cCCchhhccCCCCCEEEccCCccc-cccc-ccCCCccceeec
Confidence 999999999665555568999999999999983 333334778899999999998754 4444 778999999999
Q ss_pred cCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccC
Q 015671 235 SGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP 313 (403)
Q Consensus 235 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 313 (403)
++|..... +.... ++|+.|++++|.++.++. +..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+.
T Consensus 207 ~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 207 YVNQITDI-TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp CSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--
T ss_pred ccCCCCCC-chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--
Confidence 99765443 33333 999999999999998876 8899999999999998655 3 4578899999999999877664
Q ss_pred cccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchh
Q 015671 314 ECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLG 377 (403)
Q Consensus 314 ~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~ 377 (403)
+.+..+++|+.|++++|.++ ..+..+..+++|+.|++++|+..+..| +..+++|+.+..
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l 340 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADF 340 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESS
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeeh
Confidence 45788999999999999998 455678899999999999998665544 456666666433
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.5e-25 Score=205.19 Aligned_cols=236 Identities=17% Similarity=0.230 Sum_probs=206.1
Q ss_pred CCeeEEEecCCCCC---CCCCCC-CCCCceEEEccC-CCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671 131 AEVKYLHWHGYPLK---SFPSNL-SAEKLVLFEVPE-NDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK 204 (403)
Q Consensus 131 ~~L~~L~l~~~~~~---~lp~~~-~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 204 (403)
.+++.|+++++.+. .+|..+ .+++|++|++++ |.+. .+|..+..+++|++|++++|. +.+.+|. .+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~--~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD--FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG--GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCH--HHhCCCC
Confidence 57999999999987 478777 799999999995 8887 578899999999999999994 3324553 6788999
Q ss_pred CcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--C-CCcEEEecCccCc-ccChhhhCCCCCCEEecc
Q 015671 205 VVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--G-NISWLFLTGTAIK-ELPSSIESLLRLEYLDLS 280 (403)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~-~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~ 280 (403)
|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+. . +|++|++++|.++ .+|..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999998888999999999999999999887667777665 4 9999999999998 7888888887 9999999
Q ss_pred cCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcC
Q 015671 281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSL 359 (403)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l 359 (403)
+|.+.+..|..+..+++|+.|++++|.+.+.++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|+..+.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9999888898999999999999999998877765 788999999999999999 89999999999999999999999889
Q ss_pred CCCeEeccCCCCCCCc
Q 015671 360 PSPLFLARGCLAMQPF 375 (403)
Q Consensus 360 p~~~l~i~~c~~l~~~ 375 (403)
|.. ..+++|+.+
T Consensus 285 p~~----~~l~~L~~l 296 (313)
T 1ogq_A 285 PQG----GNLQRFDVS 296 (313)
T ss_dssp CCS----TTGGGSCGG
T ss_pred CCC----ccccccChH
Confidence 874 445555553
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.3e-24 Score=217.11 Aligned_cols=252 Identities=17% Similarity=0.107 Sum_probs=172.2
Q ss_pred hhcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccc---ccccc
Q 015671 97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQL---WDCVK 173 (403)
Q Consensus 97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l---~~~~~ 173 (403)
.+..+++|+.|++++|.+ ..+| .+..++|++|++++|....-.....+++|++|++++|.+... +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-------~~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-------KQFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-------SSCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-------cccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 344555566666665554 1222 222256666666665322111222566777777777777654 56677
Q ss_pred cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CC
Q 015671 174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GN 250 (403)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~ 250 (403)
.+++|++|++++|. +. .++ ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|......|..+. ++
T Consensus 374 ~~~~L~~L~L~~n~-l~-~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AI-IMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CCSCCCEEECCSCS-EE-EEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cCCcccEeECCCCc-cc-cch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 77788888887773 33 344 466777888888888877666555 4667788888888888776655555444 78
Q ss_pred CcEEEecCccCcc--cChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEcc
Q 015671 251 ISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLT 328 (403)
Q Consensus 251 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 328 (403)
|+.|++++|.++. +|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 8888888887774 56677778888888888887777777777778888888888887777777778888888888888
Q ss_pred CCCCcccChhhhcCC-CCCEEeccCCcCCCcCC
Q 015671 329 ETNIERIPESIIQHF-VLRYLLLSYSERLQSLP 360 (403)
Q Consensus 329 ~~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~lp 360 (403)
+|.++.+|..+..++ +|+.|++++|+....-+
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 888887777777776 58888888887654433
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=225.58 Aligned_cols=153 Identities=12% Similarity=0.133 Sum_probs=98.5
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-C
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-S 151 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~ 151 (403)
..++.+.+....+ ..+.+..|.++++|++|++++|... ..+ +..+.. ++|++|+|++|.+..+ |..+ .
T Consensus 24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 4555554443333 3445667888888888888887543 233 455666 8888888888887766 5555 6
Q ss_pred CCCceEEEccCCCccc-cccc--cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCC--
Q 015671 152 AEKLVLFEVPENDIEQ-LWDC--VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNL-- 226 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-- 226 (403)
+++|++|++++|.+.. ++.. ++.+++|++|++++|. +. .++....++++++|++|++++|.+.+..+..++.+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~-~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CC-CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-cc-ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 8888888888888775 3433 7788888888888873 22 22222356777888888888877655555444433
Q ss_pred CCCCEEeecCCC
Q 015671 227 EFLTKLDLSGCS 238 (403)
Q Consensus 227 ~~L~~L~l~~~~ 238 (403)
++|+.|++++|.
T Consensus 174 ~~L~~L~L~~n~ 185 (844)
T 3j0a_A 174 KTLSFFSLAANS 185 (844)
T ss_dssp CSSCCCEECCSB
T ss_pred CccceEECCCCc
Confidence 445544444443
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.7e-25 Score=218.50 Aligned_cols=270 Identities=16% Similarity=0.129 Sum_probs=184.8
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CC
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SA 152 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l 152 (403)
..++.+.+ +......+.+..|..+++||+|++++|.+. ...+..+.. ++|++|++++|.+..++.. + .+
T Consensus 26 ~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDL--SFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEEC--CSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEEC--cCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 34555444 333333455678899999999999999874 222345666 8999999999999888764 4 78
Q ss_pred CCceEEEccCCCccc--cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCC-----
Q 015671 153 EKLVLFEVPENDIEQ--LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN----- 225 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----- 225 (403)
++|++|++++|.+.. .|..++.+++|++|++++|.... .++. ..+.++++|++|++++|.+.+..|..++.
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-ccCH-hhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999999999885 45778899999999999985444 4442 36778888999999888877666665544
Q ss_pred -------------------CCCCCEEeecCCCCCCCC----ccc------------------------------------
Q 015671 226 -------------------LEFLTKLDLSGCSKLKRL----PEI------------------------------------ 246 (403)
Q Consensus 226 -------------------l~~L~~L~l~~~~~~~~~----~~~------------------------------------ 246 (403)
+++|+.|++++|...+.. +..
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 456666666665433210 000
Q ss_pred --------------------------------------------------c--cCCCcEEEecCccCcccChhh-hCCCC
Q 015671 247 --------------------------------------------------S--SGNISWLFLTGTAIKELPSSI-ESLLR 273 (403)
Q Consensus 247 --------------------------------------------------~--~~~L~~L~l~~~~~~~l~~~~-~~l~~ 273 (403)
. ..+++.|++++|.++.+|..+ ..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 0 024555666666666666555 46788
Q ss_pred CCEEecccCcCCCcCCc---cccCCCCCcEEeecCCCCCcccC--cccCCCCCCCEEEccCCCCcccChhhhcCCCCCEE
Q 015671 274 LEYLDLSDCKRLKSLPS---SLCKLKSLGVLNLYGCSNLQRLP--ECLGQLSSPITLGLTETNIERIPESIIQHFVLRYL 348 (403)
Q Consensus 274 L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 348 (403)
|+.|++++|.+.+.+|. .++.+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.++.+|..+..+++|++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 88888888877665532 35667777888887776654322 34667777777777777777777766677777777
Q ss_pred eccCCcC
Q 015671 349 LLSYSER 355 (403)
Q Consensus 349 ~l~~c~~ 355 (403)
++++|..
T Consensus 416 ~Ls~N~l 422 (549)
T 2z81_A 416 NLSSTGI 422 (549)
T ss_dssp ECTTSCC
T ss_pred ECCCCCc
Confidence 7777653
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.5e-24 Score=196.00 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=136.9
Q ss_pred CCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccc-ccccccCCCCc
Q 015671 103 KLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQL-WDCVKHYSKLN 179 (403)
Q Consensus 103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~ 179 (403)
++++++++++.+. .+|..+. +.|++|++++|.++.++. .+ .+++|++|++++|.+..+ |..+..+++|+
T Consensus 32 ~l~~l~~~~~~l~-------~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE-------KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCC-------SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCcc-------ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 5566666655442 2332221 556666666666666654 23 566666666666666655 45666666666
Q ss_pred EeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCC--CCccccc--CCCcEEE
Q 015671 180 QIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK--RLPEISS--GNISWLF 255 (403)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~--~~L~~L~ 255 (403)
+|++++| .+. .+|. .+. ++|++|++++|.+....+..+..+++|+.|++++|.... ..+..+. ++|++|+
T Consensus 104 ~L~Ls~n-~l~-~l~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 104 RLYLSKN-QLK-ELPE--KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp EEECCSS-CCS-BCCS--SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred EEECCCC-cCC-ccCh--hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 6666666 233 3332 111 556666666665444444445566666666666654321 2222222 6666666
Q ss_pred ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 335 (403)
+++|.++.+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+
T Consensus 178 l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 178 IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence 66666666654432 5666666666665555555666666666666666665555555566666666666666666666
Q ss_pred ChhhhcCCCCCEEeccCCcC
Q 015671 336 PESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 336 ~~~~~~~~~L~~L~l~~c~~ 355 (403)
|..+..+++|++|++++|+.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCC
T ss_pred ChhhccCCCcCEEECCCCcC
Confidence 66666666666666666643
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=213.82 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=57.7
Q ss_pred cChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccc-
Q 015671 93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQ- 167 (403)
Q Consensus 93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~- 167 (403)
+.+..|.++++||+|++++|.+. .. +..+.. ++|++|++++|.++.++. .+ .+++|++|++++|.+..
T Consensus 67 i~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 139 (570)
T 2z63_A 67 IEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred cCcccccCchhCCEEeCcCCcCC-------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence 44556667777777777776653 22 234444 777777777777776664 23 67777777777777764
Q ss_pred -cccccccCCCCcEeecccc
Q 015671 168 -LWDCVKHYSKLNQIIHAVC 186 (403)
Q Consensus 168 -l~~~~~~l~~L~~L~l~~~ 186 (403)
+|..++++++|++|++++|
T Consensus 140 ~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 140 KLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCCGGGGGCTTCCEEECTTS
T ss_pred cChhhhcccCCCCEEeCcCC
Confidence 5667777777777777766
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=213.98 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=163.1
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKL 178 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L 178 (403)
++|++|++++|.+.+.. +..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELW------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCC------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCcccccC------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 89999999999885321 234455 8999999999999888 5555 799999999999999999877 89999
Q ss_pred cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCC--CEEeecCCCC--CCCCcccc-------
Q 015671 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK--LKRLPEIS------- 247 (403)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~------- 247 (403)
++|++++|. +. .++.+..++++++|++|++++|.+.+ ..+..+++| +.|++++|.. ....|...
T Consensus 93 ~~L~L~~N~-l~-~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 93 KHLDLSFNA-FD-ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp SEEECCSSC-CS-SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred cEEeccCCc-cc-cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccce
Confidence 999999993 33 33333467888888888888877543 123344444 5555554433 11111000
Q ss_pred ------------------------------------------------------------------------------cC
Q 015671 248 ------------------------------------------------------------------------------SG 249 (403)
Q Consensus 248 ------------------------------------------------------------------------------~~ 249 (403)
.+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 01
Q ss_pred CCcEEEecCccCc-ccChhh-----------------------------------------------------hCCCCCC
Q 015671 250 NISWLFLTGTAIK-ELPSSI-----------------------------------------------------ESLLRLE 275 (403)
Q Consensus 250 ~L~~L~l~~~~~~-~l~~~~-----------------------------------------------------~~l~~L~ 275 (403)
+|++|++++|.++ .+|..+ ..+++|+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 4445555544444 333222 4566777
Q ss_pred EEecccCcCCCcCCccccCCCCCcEEeecCCCCCc--ccCcccCCCCCCCEEEccCCCCcc-cChh-hhcCCCCCEEecc
Q 015671 276 YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ--RLPECLGQLSSPITLGLTETNIER-IPES-IIQHFVLRYLLLS 351 (403)
Q Consensus 276 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~-l~~~-~~~~~~L~~L~l~ 351 (403)
+|++++|.+.+.+|..++.+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.++. +|.. +..+++|+.|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 77777777766667777777777777777777665 455666777777777777777774 6653 4555666666666
Q ss_pred CCcCCCcC
Q 015671 352 YSERLQSL 359 (403)
Q Consensus 352 ~c~~l~~l 359 (403)
+|...+.+
T Consensus 408 ~N~l~~~~ 415 (520)
T 2z7x_B 408 SNILTDTI 415 (520)
T ss_dssp SSCCCGGG
T ss_pred CCCCCcch
Confidence 66554433
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=202.68 Aligned_cols=248 Identities=17% Similarity=0.104 Sum_probs=181.5
Q ss_pred hhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccC
Q 015671 97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHY 175 (403)
Q Consensus 97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l 175 (403)
.|..+++|++|++++|.+.+ ++ +.. ++|++|++++|.++.+| ...+++|++|++++|.++.++ ++.+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence 57888999999999988753 22 455 88999999999988876 337889999999999888875 7888
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 255 (403)
++|++|++++| .+. .+ .++++++|++|++++|...+.+ .++.+++|+.|++++|.. +.+|....++|+.|+
T Consensus 127 ~~L~~L~l~~N-~l~----~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 127 PLLTYLNCARN-TLT----EI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELDVSQNKLLNRLN 197 (457)
T ss_dssp TTCCEEECTTS-CCS----CC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCCCTTCTTCCEEE
T ss_pred CcCCEEECCCC-ccc----ee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceeccccCCCCCEEE
Confidence 99999999988 233 22 3677888899999888666666 367888899999988654 345522228888888
Q ss_pred ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc--
Q 015671 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-- 333 (403)
Q Consensus 256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-- 333 (403)
+++|.++.++ ++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+.. +..+++|+.|+++++.++
T Consensus 198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCC
T ss_pred CcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEE
Confidence 8888888763 7778888888888888666 55 677888888888888776643 334555555555544443
Q ss_pred ---------ccChhhhcCCCCCEEeccCCcCCCcCCCC-----eEeccCCCCCCCc
Q 015671 334 ---------RIPESIIQHFVLRYLLLSYSERLQSLPSP-----LFLARGCLAMQPF 375 (403)
Q Consensus 334 ---------~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-----~l~i~~c~~l~~~ 375 (403)
.+| .+.+++|+.|++++|+.++.+|.. .+++.+|++|+.+
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 233 356688888888888877777752 4556666666653
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.4e-23 Score=193.98 Aligned_cols=239 Identities=15% Similarity=0.185 Sum_probs=184.0
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccc-ccccccCCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQL-WDCVKHYSKL 178 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L 178 (403)
.+++.++++++.+. .+|..+. ++|++|++++|.+..++. .+ .+++|++|++++|.+..+ |..+..+++|
T Consensus 33 c~l~~l~~~~~~l~-------~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-------AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCS-------SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCcc-------ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 36888888887652 4444332 688899999988887754 44 788899999999988876 6678889999
Q ss_pred cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCC--CCccccc-CCCcEEE
Q 015671 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK--RLPEISS-GNISWLF 255 (403)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~-~~L~~L~ 255 (403)
++|++++| .+. .+|. .+. ++|++|++++|.+....+..+..+++|+.|++++|.... ..+..+. .+|+.|+
T Consensus 105 ~~L~L~~n-~l~-~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 105 QKLYISKN-HLV-EIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CEEECCSS-CCC-SCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CEEECCCC-cCC-ccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 99999888 344 4443 222 788999999887665444557888999999998876532 2233322 5888888
Q ss_pred ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 335 (403)
+++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|.++.+
T Consensus 179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence 98888888886554 7888999998887777767788888999999998888777777788888999999999998888
Q ss_pred ChhhhcCCCCCEEeccCCcCC
Q 015671 336 PESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 336 ~~~~~~~~~L~~L~l~~c~~l 356 (403)
|..+..+++|+.|++++|+..
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCC
T ss_pred ChhhhcCccCCEEECCCCCCC
Confidence 888888899999999988654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2e-23 Score=192.66 Aligned_cols=241 Identities=16% Similarity=0.168 Sum_probs=194.3
Q ss_pred CCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK 177 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 177 (403)
++|++|++++|.+. .++. .+.. ++|++|++++|.+..+ |..+ .+++|++|++++|.+..+|..+. ++
T Consensus 52 ~~l~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKIT-------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp TTCCEEECCSSCCC-------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCeEEECCCCcCC-------EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 68999999999874 3333 4555 8999999999999887 6666 78999999999999998887654 79
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC--ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 255 (403)
|++|++++|. +. .++ ...+.++++|+.|++++|.+.. ..+..+..+++|+.|++++|. +..+|....++|++|+
T Consensus 123 L~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENE-IT-KVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELH 198 (330)
T ss_dssp CCEEECCSSC-CC-BBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEE
T ss_pred ccEEECCCCc-cc-ccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEE
Confidence 9999999983 33 222 1246788999999999987643 456678889999999999865 4456665568999999
Q ss_pred ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
+++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|.++..+++|+.|++++|.++.
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 999999876 467889999999999999987777767888999999999998765 778888999999999999999997
Q ss_pred cChhh-------hcCCCCCEEeccCCcCC
Q 015671 335 IPESI-------IQHFVLRYLLLSYSERL 356 (403)
Q Consensus 335 l~~~~-------~~~~~L~~L~l~~c~~l 356 (403)
++... ...+.|+.|++++|+..
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cChhhcCCcccccccccccceEeecCccc
Confidence 76432 13478999999999864
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.4e-24 Score=204.50 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=139.2
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS 176 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 176 (403)
+..+++|++|++++|.+.+ ++. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hhhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 5566777777777766532 222 333 6667777766666666552256666677776666666544 56666
Q ss_pred CCcEeecccccCccccCCC------------------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCC
Q 015671 177 KLNQIIHAVCHRLIAKTPN------------------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS 238 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (403)
+|++|++++|. +. .++. ...+.++++|++|++++|.+.. ++ .+..+++|+.|++++|.
T Consensus 135 ~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 135 NLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQ 210 (466)
T ss_dssp TCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCc
Confidence 66666666652 22 1211 1124455666666666665332 22 25566667777776655
Q ss_pred CCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCC
Q 015671 239 KLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318 (403)
Q Consensus 239 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 318 (403)
.....+....++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 443333111266677777666666553 45566667777777666544332 5566666666666665554332 556
Q ss_pred CCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 319 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 357 (403)
+++|+.|++++|.++.++. +..+++|+.|++++|...+
T Consensus 286 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred CCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 6666666666666665543 5566666666666665443
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=212.51 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=97.6
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCCC-CCC-C
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSFP-SNL-S 151 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~ 151 (403)
..++.+. ++......+.+..|.++++|++|++++|.+. .+ +..+.. ++|++|++++|.+..+| ..+ .
T Consensus 28 ~~l~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLD--LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEE--CCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEE--ccCCccCccChhHhhCCCCceEEECCCCcCC-------ccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 3455544 4444444556778999999999999999874 33 345566 99999999999998886 445 7
Q ss_pred CCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCC
Q 015671 152 AEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKS 215 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 215 (403)
+++|++|++++|.+..++. .++.+++|++|++++|. +. .++.+..++++++|++|++++|.+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQ-SFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CC-CCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCc-cc-eecChhhhcccCCCCEEeCcCCcc
Confidence 9999999999999998875 68999999999999983 32 222234567777778887777653
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.3e-24 Score=210.25 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=96.7
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKL 178 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L 178 (403)
++|++|++++|.+.+. .+..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 8999999999988521 2245566 9999999999999988 4555 799999999999999999877 89999
Q ss_pred cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCC--CEEeecCCCC
Q 015671 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK 239 (403)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 239 (403)
++|++++|. +. .++.+..++++++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 124 ~~L~Ls~N~-l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 124 RHLDLSFND-FD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SEEECCSSC-CS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CEEECCCCC-cc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999999993 44 444345788899999999999876542 23344444 6666666543
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6e-24 Score=194.06 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=108.8
Q ss_pred CCeeEEEecCCCCCCC---CCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCc
Q 015671 131 AEVKYLHWHGYPLKSF---PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVV 206 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~l---p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 206 (403)
++|++|++++|.+..+ |..+ .+++|++|++++|.+..+|..+..+++|++|++++| .+. .++....+.++++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLK-QMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEE-SSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-ccc-ccccchhhhhccCCC
Confidence 5555555555554433 1111 345555555555555555555555555555555554 222 222223444555555
Q ss_pred EEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcc--cChhhhCCCCCCEEecccCcC
Q 015671 207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~ 284 (403)
+|++++|.+....+..+..+++|++|++++ |.++. +|..+..+++|+.|++++|.+
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAG----------------------NSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTT----------------------CEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCC----------------------CccccccchhHHhhCcCCCEEECCCCCc
Confidence 555555544434444444455555555554 44442 455556666666666666665
Q ss_pred CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCC-CCCEEeccCCcCC
Q 015671 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHF-VLRYLLLSYSERL 356 (403)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~-~L~~L~l~~c~~l 356 (403)
.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ ..|..+..++ +|+.|++++|+..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5555555666666666666666655554445666666666666666666 3344455553 6666666666543
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2e-23 Score=192.94 Aligned_cols=240 Identities=17% Similarity=0.144 Sum_probs=183.0
Q ss_pred CCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK 177 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 177 (403)
++|++|++++|.+. .+ +..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.+..+|..+. ++
T Consensus 54 ~~l~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp TTCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCeEEECCCCcCC-------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 68889999888764 33 345555 8899999998888877 4445 68889999999998888876654 78
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC--ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 255 (403)
|++|++++|. +. .++ ...+.++++|++|++++|.+.. ..+..+..+ +|+.|++++|. +..+|....++|++|+
T Consensus 125 L~~L~l~~n~-i~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 125 LVELRIHDNR-IR-KVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELH 199 (332)
T ss_dssp CCEEECCSSC-CC-CCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCB
T ss_pred CCEEECCCCc-cC-ccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEE
Confidence 9999998883 33 333 1246778888999998887642 455666666 88899998865 4446665558889999
Q ss_pred ecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 256 LTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 256 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
+++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|.++..+++|+.|++++|.++.
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 9998888766 56788889999999998877766667888899999999987765 677778888999999999999886
Q ss_pred cChh-hhc------CCCCCEEeccCCcCC
Q 015671 335 IPES-IIQ------HFVLRYLLLSYSERL 356 (403)
Q Consensus 335 l~~~-~~~------~~~L~~L~l~~c~~l 356 (403)
++.. +.. .+.|+.|++++|+..
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhHccccccccccccccceEeecCccc
Confidence 6542 221 467889999998765
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-24 Score=202.97 Aligned_cols=246 Identities=13% Similarity=0.068 Sum_probs=195.8
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCC-CC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccccc-ccccc
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDP-GF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLW-DCVKH 174 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l-~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~-~~~~~ 174 (403)
.++++|+|+++++.+ ..+|..+ .. ++|++|+++++.+..++. .+ .+++|++|++++|.+..++ ..++.
T Consensus 43 ~l~~l~~l~l~~~~l-------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEE-------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCch-------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 468999999999876 3555543 33 899999999999998865 44 7999999999999999875 56899
Q ss_pred CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCC----
Q 015671 175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGN---- 250 (403)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---- 250 (403)
+++|++|++++| .+. .+|. ..+.++++|++|++++|.+....+..++.+++|+.|++++|.... .+....++
T Consensus 116 l~~L~~L~L~~n-~l~-~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEE
T ss_pred CCCCCEEECCCC-ccC-cCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccccccccccee
Confidence 999999999998 344 4442 346889999999999998777667778999999999999976433 22222244
Q ss_pred ---------------CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcc
Q 015671 251 ---------------ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 251 ---------------L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
++.|++++|.++.+|. ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 5555555555554443 2346889999998886653 46788999999999999988888889
Q ss_pred cCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 316 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+..+++|+.|++++|.++.+|.....+++|+.|++++|+.. .+|.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCc
Confidence 99999999999999999998888888999999999999654 5654
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.5e-23 Score=200.07 Aligned_cols=248 Identities=14% Similarity=0.071 Sum_probs=200.2
Q ss_pred hhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccC
Q 015671 97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHY 175 (403)
Q Consensus 97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l 175 (403)
.+.++++|++|++++|.+.+ ++ .+.. ++|++|++++|.++.+| ...+++|++|++++|.++.++ ++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ChhHcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence 46778999999999998853 23 4555 99999999999999987 337999999999999999885 8899
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 255 (403)
++|++|++++| .+. .+ .++++++|++|++++|.+.+ ++ ++.+++|+.|++++|..++.++....++|+.|+
T Consensus 106 ~~L~~L~L~~N-~l~-~l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLT-KL----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSS-CCS-CC----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CcCCEEECCCC-cCC-ee----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 99999999999 333 23 27889999999999998665 43 789999999999999777777433339999999
Q ss_pred ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 335 (403)
+++|.++.+| +..+++|+.|++++|.+.+. .++.+++|+.|++++|.+.+ +| +..+++|+.|++++|.++.+
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 9999999987 78899999999999987664 37889999999999998877 55 78999999999999999977
Q ss_pred ChhhhcCCC----------CCEEeccCCcCCCcCCCC------eEeccCCCCCCC
Q 015671 336 PESIIQHFV----------LRYLLLSYSERLQSLPSP------LFLARGCLAMQP 374 (403)
Q Consensus 336 ~~~~~~~~~----------L~~L~l~~c~~l~~lp~~------~l~i~~c~~l~~ 374 (403)
| ++.+++ |+.|++++|..++.+|.. .+++.+|+.+..
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCE
T ss_pred C--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccce
Confidence 6 344554 456666667666666531 455555554444
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.6e-23 Score=198.64 Aligned_cols=221 Identities=20% Similarity=0.255 Sum_probs=157.5
Q ss_pred CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
.+++.|++++|.+..++ ..+ .+++|++|++++|.+..++ ..+..+++|++|++++| .+. .++. ..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~-~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLT-TIPN-GAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCS-SCCT-TTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCC-eeCH-hHhhccccCce
Confidence 66777777777777664 333 6777778888777777664 56777777888888777 333 3331 34667777788
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 284 (403)
|++++|.+....+..+..+++|+.|++++|..++.++.... ++|++|++++|.++.+|. +..+++|+.|++++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence 88877775544444667777788888877766666655322 777788888777777763 66777888888888877
Q ss_pred CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcC
Q 015671 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 355 (403)
.+..|..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.++.++. .+..+++|+.|++++|+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 76667777778888888888877777777777778888888888888876654 346677888888887763
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.2e-23 Score=198.85 Aligned_cols=220 Identities=22% Similarity=0.229 Sum_probs=147.5
Q ss_pred CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
+++++|++++|.+..++ ..+ .+++|++|++++|.+..++ ..+..+++|++|++++| .+. .++ ...+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLT-VIP-SGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS-BCC-TTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCC-ccC-hhhhcccCCCCE
Confidence 56777777777766653 333 5677777777777776654 46666777777777776 233 333 134566677777
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 284 (403)
|++++|.+....+..+..+++|+.|++++|..++.++.... ++|++|++++|.++.+| .+..+++|+.|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 77777665433334566677777777777666666554322 67777777777777665 366677777777777777
Q ss_pred CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCc
Q 015671 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 354 (403)
.+..|..+.++++|+.|++++|.+.+..+..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 66666677777777777777777776666777777777777777777776554 34667777777777775
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=4.5e-23 Score=213.36 Aligned_cols=283 Identities=14% Similarity=0.067 Sum_probs=199.3
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC-CCCC-CCCC-CCCCceEEEccCCCcccc-cccccc
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSF-PSNL-SAEKLVLFEVPENDIEQL-WDCVKH 174 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~-~~~l-p~~~-~l~~L~~L~l~~~~~~~l-~~~~~~ 174 (403)
-.++|++|++++|.+. ...+..+.. ++|++|++++|. ...+ |..+ ++++|++|++++|.+..+ |..++.
T Consensus 22 lp~~l~~LdLs~N~i~------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR------TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCC------EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCcCC------ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 3578999999999875 233556666 999999999995 5566 5556 799999999999999986 789999
Q ss_pred CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc----C
Q 015671 175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS----G 249 (403)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~ 249 (403)
+++|++|++++|. +.+.++....+.++++|++|++++|.+.+..+ ..++.+++|++|++++|......+.... +
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999993 43244544458899999999999998776544 5689999999999999876554433221 3
Q ss_pred C------------------------------CcEEEecCccCc-ccChhhh-----------------------------
Q 015671 250 N------------------------------ISWLFLTGTAIK-ELPSSIE----------------------------- 269 (403)
Q Consensus 250 ~------------------------------L~~L~l~~~~~~-~l~~~~~----------------------------- 269 (403)
+ |+.|++++|.++ ..+..+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 3 555666555433 1111110
Q ss_pred -------C--CCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-Chhh
Q 015671 270 -------S--LLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PESI 339 (403)
Q Consensus 270 -------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~ 339 (403)
. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.++.+ |..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 0 25677777777776666666677778888888888777777777777788888888888887744 5567
Q ss_pred hcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccccccCCCcchh
Q 015671 340 IQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHML 392 (403)
Q Consensus 340 ~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 392 (403)
..+++|+.|++++|.. +.+|.. .+.++++|+.+....+.+..+..++.+.
T Consensus 335 ~~l~~L~~L~L~~N~i-~~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~L~ 384 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHI-AIIQDQ--TFKFLEKLQTLDLRDNALTTIHFIPSIP 384 (844)
T ss_dssp SSCTTCCEEECCSCCC-CCCCSS--CSCSCCCCCEEEEETCCSCCCSSCCSCS
T ss_pred cCCCCCCEEECCCCCC-CccChh--hhcCCCCCCEEECCCCCCCcccCCCCcc
Confidence 7778888888887754 344432 1355666666554444444443333333
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.4e-24 Score=196.76 Aligned_cols=227 Identities=22% Similarity=0.237 Sum_probs=175.1
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCC
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAE 153 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~ 153 (403)
..++.+.+....+ ..+....|.++++|++|++++|.+... ...+..+.. ++|++|++++|.+..+|..+ .++
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFK----GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEE----EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcc----cCcccccccccccCEEECCCCccccChhhcCCCC
Confidence 3555555444333 355566789999999999999987411 111222333 89999999999998888766 799
Q ss_pred CceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC-ccCccCCCCCCCC
Q 015671 154 KLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK-SLPSEIFNLEFLT 230 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 230 (403)
+|++|++++|.+..++. .+..+++|++|++++|. +.+.. ...+.++++|++|++++|.+.+ ..|..+..+++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 99999999999998864 78999999999999984 33123 2467889999999999998765 5778888899999
Q ss_pred EEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
.|++++|. ++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 179 ~L~Ls~n~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 179 FLDLSQCQ----------------------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp EEECTTSC----------------------CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred EEECCCCC----------------------cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 99998854 3333 445677888888888888876666656778888999999988888
Q ss_pred cccCcccCCCC-CCCEEEccCCCCc
Q 015671 310 QRLPECLGQLS-SPITLGLTETNIE 333 (403)
Q Consensus 310 ~~~~~~l~~l~-~L~~L~l~~~~l~ 333 (403)
+..+..+..++ +|+.|++++|.++
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCHHHHHhhhccCCEEEccCCCee
Confidence 88887888774 8999999998886
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.8e-24 Score=210.51 Aligned_cols=246 Identities=13% Similarity=0.066 Sum_probs=197.0
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-cccc
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKH 174 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~ 174 (403)
.+.+++.|+++++.+. .+|..+.. ++|++|++++|.+..++. .+ .+++|++|++++|.+..++. .++.
T Consensus 49 ~l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 4689999999998763 45554332 899999999999998864 45 79999999999999998865 5799
Q ss_pred CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE-
Q 015671 175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW- 253 (403)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~- 253 (403)
+++|++|++++| .+. .+|. ..++++++|++|++++|.+.+..|..++.+++|+.|++++|.... .+....++|+.
T Consensus 122 l~~L~~L~L~~n-~l~-~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L 197 (597)
T 3oja_B 122 VPLLTVLVLERN-DLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA 197 (597)
T ss_dssp CTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEE
T ss_pred CCCCCEEEeeCC-CCC-CCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhh
Confidence 999999999999 444 4442 346889999999999999877777789999999999999976433 33222244444
Q ss_pred ------------------EEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcc
Q 015671 254 ------------------LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 254 ------------------L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
|++++|.++.++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred hcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 555555544444322 3678899999888665 356888999999999999999998999
Q ss_pred cCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 316 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+..+++|+.|++++|.++.+|.....+++|+.|++++|... .+|.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCc
Confidence 99999999999999999999988888999999999999765 5665
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.2e-23 Score=201.55 Aligned_cols=236 Identities=17% Similarity=0.218 Sum_probs=173.1
Q ss_pred CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCC
Q 015671 100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKL 178 (403)
Q Consensus 100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 178 (403)
.+++|+.|++.++.+. .++ .+.. ++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|
T Consensus 44 ~l~~l~~L~l~~~~i~-------~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-------SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecCCCCCc-------cCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence 3568999999988763 333 3445 9999999999999999874489999999999999998877 8999999
Q ss_pred cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc--------------------cCCCCCCCCEEeecCCC
Q 015671 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS--------------------EIFNLEFLTKLDLSGCS 238 (403)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~ 238 (403)
++|++++| .+. .+ ..+.++++|++|++++|.+.. ++. .+..+++|+.|++++|.
T Consensus 115 ~~L~L~~n-~l~-~~---~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 115 TGLTLFNN-QIT-DI---DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CEEECCSS-CCC-CC---GGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCC-CC---hHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 99999998 333 33 347788899999998876443 221 14455666666666654
Q ss_pred CCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccC
Q 015671 239 KLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLG 317 (403)
Q Consensus 239 ~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 317 (403)
+..++.... ++|++|++++|.++.++. ++.+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..+ +.
T Consensus 189 -l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 189 -VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp -CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred -CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hh
Confidence 333333333 677777777777665544 5667777777777776443 3 246677888888888877666544 77
Q ss_pred CCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671 318 QLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 318 ~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 357 (403)
.+++|+.|++++|.++.++. +..+++|+.|++++|...+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence 88888888888888887765 7788888888888886544
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=198.30 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=199.7
Q ss_pred CCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccccc-cccCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWDC-VKHYS 176 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~~-~~~l~ 176 (403)
++|++|++++|.+. .++. .+.. ++|++|++++|.++.++ ..+ .+++|++|++++|.++.++.. ++.++
T Consensus 52 ~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCc-------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 58999999999874 3443 4555 99999999999998875 445 789999999999999988765 88999
Q ss_pred CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCcc-CccCCCCCCCCEEeecCCCCCCCCccccc--CCCcE
Q 015671 177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISW 253 (403)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~ 253 (403)
+|++|++++| .+. .++....+.++++|++|++++|.....+ +..++.+++|+.|++++|...+..|..+. ++|++
T Consensus 125 ~L~~L~L~~n-~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 125 SLTFLNLLGN-PYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TCSEEECTTC-CCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred cCCEEECCCC-CCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999998 344 4554346888999999999998544444 56788899999999999876655555554 88999
Q ss_pred EEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccc---cCCCCCcEEeecCCCCCc----ccCcccCCCCCCCEE
Q 015671 254 LFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSL---CKLKSLGVLNLYGCSNLQ----RLPECLGQLSSPITL 325 (403)
Q Consensus 254 L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L 325 (403)
|++++|.++.+|..+ ..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+.+ .+|.++..+++|+.|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 999999998877654 568999999999998776544332 346678899999887765 467788899999999
Q ss_pred EccCCCCcccChhh-hcCCCCCEEeccCCcCCCcCC
Q 015671 326 GLTETNIERIPESI-IQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 326 ~l~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~lp 360 (403)
++++|.++.+|..+ ..+++|++|++++|+..+..|
T Consensus 283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999998875 889999999999998765443
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=4.6e-23 Score=208.77 Aligned_cols=243 Identities=18% Similarity=0.089 Sum_probs=146.1
Q ss_pred CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CC
Q 015671 76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SA 152 (403)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l 152 (403)
..++.+.+. ......+.+..|.++++|++|++++|.+.+.. +..+.. ++|++|++++|.+..+|.. + .+
T Consensus 25 ~~l~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLE------PELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECC--SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC------TTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECC--CCCCCCcCHHHHhCCCcCcEEECCCCccCccC------HHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 345554443 33333455667888899999999888775321 233333 7888899988888888763 4 68
Q ss_pred CCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC--CCCCC
Q 015671 153 EKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFL 229 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L 229 (403)
++|++|++++|.+..++ ..++.+++|++|++++|. +.+.. +..+.++++|++|++++|.+.+..+..++ .+++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccC--chhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 88899999888888776 568888888999888883 33122 23567788888888888775554443332 45677
Q ss_pred CEEeecCCCCCCCCccccc-----------------------------CCCcEEEecCccCccc-ChhhhCCC--CCCEE
Q 015671 230 TKLDLSGCSKLKRLPEISS-----------------------------GNISWLFLTGTAIKEL-PSSIESLL--RLEYL 277 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~-----------------------------~~L~~L~l~~~~~~~l-~~~~~~l~--~L~~L 277 (403)
+.|++++|...+..|..+. ++|+.|++++|.++.. |..+..++ +|+.|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 7777777654333222111 2344555555544432 22333332 25555
Q ss_pred ecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671 278 DLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE 329 (403)
Q Consensus 278 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 329 (403)
++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 5555554444444455555555555555555444444444444444444444
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.7e-23 Score=206.64 Aligned_cols=250 Identities=16% Similarity=0.200 Sum_probs=182.4
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWD-CVKHYSK 177 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~ 177 (403)
++|++|++++|.+.+ ..+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+..++. .++.+++
T Consensus 26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 789999999998742 23455666 99999999999998876 445 79999999999999998865 5999999
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--------
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS-------- 248 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------- 248 (403)
|++|++++|. +. .++.+..++++++|++|++++|...+.+| ..++.+++|+.|++++|...+..|....
T Consensus 100 L~~L~Ls~n~-l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 100 LKYLNLMGNP-YQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CCEEECTTCC-CS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CcEEECCCCc-cc-ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 9999999993 33 33334578899999999999998677776 5788999999999999876554443322
Q ss_pred ------------------CCCcEEEecCccCcccC---hh-----------------------------hhCC-------
Q 015671 249 ------------------GNISWLFLTGTAIKELP---SS-----------------------------IESL------- 271 (403)
Q Consensus 249 ------------------~~L~~L~l~~~~~~~l~---~~-----------------------------~~~l------- 271 (403)
++|++|++++|.++.++ .. +..+
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 45666666666555321 00 0011
Q ss_pred ----------------------------------------------------CCCCEEecccCcCCCcCCccc-cCCCCC
Q 015671 272 ----------------------------------------------------LRLEYLDLSDCKRLKSLPSSL-CKLKSL 298 (403)
Q Consensus 272 ----------------------------------------------------~~L~~L~l~~~~~~~~~~~~~-~~l~~L 298 (403)
++|+.|++++|.+ +.+|..+ +.+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccc
Confidence 1233333333331 2344433 357888
Q ss_pred cEEeecCCCCCcccC---cccCCCCCCCEEEccCCCCcccC---hhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 299 GVLNLYGCSNLQRLP---ECLGQLSSPITLGLTETNIERIP---ESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 299 ~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+.|++++|.+.+.+| ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|... .+|.
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence 999999988877654 33678899999999999998765 34788999999999998654 6776
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=3.4e-23 Score=187.10 Aligned_cols=202 Identities=20% Similarity=0.227 Sum_probs=103.8
Q ss_pred CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
++|++|+++++.++.++.. + .+++|++|++++|.+..+ +..+..+++|++|++++|..+. .++ ...+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~-~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVD-PATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCC-TTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccC-HHHhcCCcCCCE
Confidence 3444555555444444321 2 344555555555544443 3344444555555554442222 221 123444444455
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLK 286 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~ 286 (403)
|++++|.+....+..+..+++|+.|+ +++|.++.++.. +..+++|+.|++++|.+.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~----------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLY----------------------LQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEE----------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEE----------------------CCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 55554444333334444444444444 444555544432 4556666666666665444
Q ss_pred cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671 287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 356 (403)
..+..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 333345566666666666666655556666666666666666666665543 3566666666666666544
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.6e-22 Score=181.28 Aligned_cols=218 Identities=20% Similarity=0.172 Sum_probs=159.1
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (403)
+.++.++..++.+|..+ .++|++|++++|.+..++ ..+..+++|++|++++| .+. .+. ...+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~-~~~-~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLA-RID-AAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-EEC-TTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccc-eeC-HhhcCCccCCCEEeCCC
Confidence 56777777777777644 457888888888888765 45777888888888777 233 221 23566777777777777
Q ss_pred CCCCCcc-CccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 213 SKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 213 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
|.....+ +..+..+++|++|++++|. ++.+ |..+..+++|++|++++|.+.+..+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCG----------------------LQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCc----------------------CCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 7533333 5556667777777776643 4434 45578899999999999997766666
Q ss_pred cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCC
Q 015671 291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLPSPLFLARGC 369 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c 369 (403)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|...+ +|.. .+..+
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~l 224 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE--ALAPL 224 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHH--HHTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHH--HcccC
Confidence 688999999999999988776666789999999999999999955 7788999999999999997654 4321 13456
Q ss_pred CCCCCchhhhc
Q 015671 370 LAMQPFLGIVE 380 (403)
Q Consensus 370 ~~l~~~~~~~~ 380 (403)
++|+.+....+
T Consensus 225 ~~L~~L~l~~N 235 (285)
T 1ozn_A 225 RALQYLRLNDN 235 (285)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEeccCC
Confidence 66665444333
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=8.1e-22 Score=199.61 Aligned_cols=262 Identities=21% Similarity=0.223 Sum_probs=149.1
Q ss_pred cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC------CCCC----CC-CCCCceEEEc
Q 015671 93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK------SFPS----NL-SAEKLVLFEV 160 (403)
Q Consensus 93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~------~lp~----~~-~l~~L~~L~l 160 (403)
+.+..|..+++|++|++++|.+.+ ..+..+.. ++|++|+++++... .+|. .+ .+++|++|++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQH------LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSE------ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred cCcccccCcccccEeeCCCCccCc------cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 345567777777777777776642 22333444 56666666544321 2331 22 4666666666
Q ss_pred cCCCccccc-cccccCCCCcEeecccccCccccCCC-------------------------CCCCCCCCCCcEEEecCCC
Q 015671 161 PENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPN-------------------------PTLMPRLNKVVILNLRGSK 214 (403)
Q Consensus 161 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~l~~L~~L~l~~~~ 214 (403)
++|.+..++ ..+..+++|++|++++|..-...++. ...+..+++|+.|++++|.
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 666666543 34566666666666655210001110 1234455555555555555
Q ss_pred CCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc---ccChhhhCCCCCCEEecccCcCCCcC
Q 015671 215 SLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK---ELPSSIESLLRLEYLDLSDCKRLKSL 288 (403)
Q Consensus 215 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~ 288 (403)
+.+.+| ..+..+++|+.|++++|......+..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence 444333 3445555555555555543222222222 56666666665553 44556667777777777777766555
Q ss_pred CccccCCCCCcEEeecCCCCCccc--------CcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcC
Q 015671 289 PSSLCKLKSLGVLNLYGCSNLQRL--------PECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSL 359 (403)
Q Consensus 289 ~~~~~~l~~L~~L~l~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l 359 (403)
+..+..+++|+.|++++|.+.+.. +..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|... .+
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l 575 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TL 575 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cC
Confidence 555677777777777777665431 1235677777777777777777765 3677778888888777544 44
Q ss_pred CC
Q 015671 360 PS 361 (403)
Q Consensus 360 p~ 361 (403)
|.
T Consensus 576 ~~ 577 (680)
T 1ziw_A 576 PA 577 (680)
T ss_dssp CT
T ss_pred CH
Confidence 44
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.1e-21 Score=196.75 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEE
Q 015671 249 GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLG 326 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 326 (403)
.+++.++++.|.+...+ ..+..++.++.|++++|.... ..|..+..+++|+.|++++|.+.+..|..+.++++|+.|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 56666777777666443 455778899999999887554 4566788899999999999998888888899999999999
Q ss_pred ccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 327 LTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 327 l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
|++|.++.++ ..+..+++|+.|++++|+..+..|..
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 9999999765 45788999999999999877666653
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=3.8e-21 Score=184.70 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=125.8
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
++|++|++++|.++.+|... .+|++|++++|.+..+| .++.+++|++|++++| .+. .+|. . .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~-~l~~---~--~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLK-KLPD---L--PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCS-SCCC---C--CTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCC-cCCC---C--cCcccEEEC
Confidence 55666666666555555432 35666666666655554 4566666666666665 222 2221 1 135666666
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC--cC
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK--SL 288 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~ 288 (403)
++|.+. .+|. ++.+++|+.|++++|.. ..+|... ++|+.|++++|.++.+|.. +++|+.|++++|.+.+ .+
T Consensus 223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~l-~~l~~~~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 223 GNNILE-ELPE-LQNLPFLTTIYADNNLL-KTLPDLP-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCC-SSCCSCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred cCCcCC-cccc-cCCCCCCCEEECCCCcC-Ccccccc-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence 666543 5553 66777777777777543 3344322 5666666666666665542 3556666666665444 22
Q ss_pred Cccc-------------cCC-CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671 289 PSSL-------------CKL-KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 289 ~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~ 354 (403)
|..+ ..+ ++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|. .+++|++|++++|+
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC
Confidence 2111 122 477788887776654 5543 5788888888888888876 46889999999888
Q ss_pred CCC--cCCCCe
Q 015671 355 RLQ--SLPSPL 363 (403)
Q Consensus 355 ~l~--~lp~~~ 363 (403)
..+ .+|...
T Consensus 369 l~~l~~ip~~l 379 (454)
T 1jl5_A 369 LREFPDIPESV 379 (454)
T ss_dssp CSSCCCCCTTC
T ss_pred CCcCCCChHHH
Confidence 777 677653
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=6.7e-24 Score=194.72 Aligned_cols=244 Identities=12% Similarity=0.020 Sum_probs=191.6
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVK 173 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~ 173 (403)
...+..+++|++|++++|.+.+. .+..+.. ++|++|++++|.+..++....+++|++|++++|.+..++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----
T ss_pred HHHhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----
Confidence 34566778999999999987532 2234445 889999999999877665447899999999999988776
Q ss_pred cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CC
Q 015671 174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GN 250 (403)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~ 250 (403)
..++|++|++++|. +. .++ ...+++|++|++++|.+....+..++.+++|+.|++++|......+.... ++
T Consensus 97 ~~~~L~~L~l~~n~-l~-~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 VGPSIETLHAANNN-IS-RVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ECTTCCEEECCSSC-CS-EEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CCCCcCEEECCCCc-cC-CcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 34899999999983 33 222 12367889999999987776666788899999999999766554444332 89
Q ss_pred CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671 251 ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET 330 (403)
Q Consensus 251 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 330 (403)
|++|++++|.++.++.. ..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 171 L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 99999999999887643 358999999999998654 5556888999999999998766 57778889999999999999
Q ss_pred CCc--ccChhhhcCCCCCEEeccCCcCCC
Q 015671 331 NIE--RIPESIIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 331 ~l~--~l~~~~~~~~~L~~L~l~~c~~l~ 357 (403)
.+. .++..+..++.|+.|++++|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECCCchhcc
Confidence 998 778888899999999998765443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.3e-21 Score=188.32 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=187.0
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWD-CVKHYSK 177 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~ 177 (403)
+++++|++++|.+. ...+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+..++. .+..+++
T Consensus 75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 68999999999874 223455666 99999999999998876 445 79999999999999998875 5888999
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc-cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEE
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLF 255 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~ 255 (403)
|++|++++|. +. .++ ...+.++++|+.|++++|...+.++. .+..+++|+.|++++|. +..+|.... ++|+.|+
T Consensus 149 L~~L~L~~N~-l~-~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 149 LRELWLRNNP-IE-SIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELE 224 (452)
T ss_dssp CCEEECCSCC-CC-EEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEE
T ss_pred CCEEECCCCC-cc-eeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEE
Confidence 9999999983 33 343 24678899999999999777777764 57889999999999975 445666555 9999999
Q ss_pred ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999999977 567899999999999999988888888999999999999999888777777889999999999998865
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=187.61 Aligned_cols=222 Identities=17% Similarity=0.210 Sum_probs=185.4
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKHYSK 177 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~ 177 (403)
++++.|++++|.+. ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 68999999999874 122345556 999999999999988763 34 68999999999999998875 6889999
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc-cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEE
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLF 255 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~ 255 (403)
|++|++++|. +. .++ ...+.++++|++|++++|.....++. .+.++++|+.|++++|. ++.+|.... ++|+.|+
T Consensus 138 L~~L~L~~N~-i~-~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 138 LKELWLRNNP-IE-SIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELD 213 (440)
T ss_dssp CCEEECCSCC-CC-EEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEE
T ss_pred CceeeCCCCc-cc-ccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEE
Confidence 9999999983 33 333 24678899999999999777777664 57889999999999964 556676555 8999999
Q ss_pred ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999977 567899999999999999988888888999999999999999888777778889999999999998865
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.1e-20 Score=187.28 Aligned_cols=227 Identities=20% Similarity=0.167 Sum_probs=139.5
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
++|++|++++|.+. .+|. ..++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 45555555555542 2222 11455555555555555554 44555555555555555443 33444455
Q ss_pred ecccccCccccCCCCC--------------CC-CCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccc
Q 015671 182 IHAVCHRLIAKTPNPT--------------LM-PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~--------------~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 246 (403)
++++| .+. .+|... .+ ..+++|+.|++++|.+. .+| ..+++|+.|++++|.. +.+|..
T Consensus 127 ~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l-~~l~~~ 199 (622)
T 3g06_A 127 WIFGN-QLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQL-ASLPTL 199 (622)
T ss_dssp ECCSS-CCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCCC
T ss_pred ECCCC-CCC-cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCC-CCCCCc
Confidence 54444 122 222100 00 01234455555554422 233 2347777888877543 334432
Q ss_pred ccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEE
Q 015671 247 SSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLG 326 (403)
Q Consensus 247 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 326 (403)
. ++|+.|++++|.++.+|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.+. .+|. .+++|+.|+
T Consensus 200 ~-~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 200 P-SELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp C-TTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred c-chhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 2 678888888888877774 34789999999887554 55 35688999999998765 4655 578899999
Q ss_pred ccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 327 LTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 327 l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
+++|.++.+|..+..+++|+.|++++|+..+..|.
T Consensus 268 Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 268 VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99999999999999999999999999987765544
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-22 Score=195.76 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=173.3
Q ss_pred CCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCc
Q 015671 101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLN 179 (403)
Q Consensus 101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 179 (403)
+++|++|++++|.+.+. .+..+.. ++|++|++++|.+..++....+++|++|++++|.+..++. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 34899999998887532 2234555 8899999998888766553378889999999998887763 38889
Q ss_pred EeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEe
Q 015671 180 QIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFL 256 (403)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l 256 (403)
+|++++|. +. .++. ..+++|+.|++++|.+.+..|..++.+++|+.|++++|...+..|..+. ++|+.|++
T Consensus 103 ~L~L~~N~-l~-~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 103 TLHAANNN-IS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp EEECCSSC-CC-CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred EEECcCCc-CC-CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 99998883 33 2221 2457788999998887777777778888899999988776655554432 78888888
Q ss_pred cCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc--c
Q 015671 257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE--R 334 (403)
Q Consensus 257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--~ 334 (403)
++|.++.+|. ...+++|+.|++++|.+.+ +|+.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .
T Consensus 177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 8888887754 3358888888888888655 44557788888888888877664 6777788888888888888887 6
Q ss_pred cChhhhcCCCCCEEecc
Q 015671 335 IPESIIQHFVLRYLLLS 351 (403)
Q Consensus 335 l~~~~~~~~~L~~L~l~ 351 (403)
+|.++..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 77777777888877775
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=8.7e-21 Score=170.44 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=139.7
Q ss_pred ecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC
Q 015671 138 WHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL 216 (403)
Q Consensus 138 l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 216 (403)
..+..+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++| .+. .++ ...+.++++|++|++++|.+.
T Consensus 14 c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~-~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 14 CMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQ-TIE-DGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp CTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCC-EEC-TTTTTTCTTCCEEECTTCCCC
T ss_pred ecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCC-ccC-HHHccCCcCCCEEECCCCccC
Confidence 33444555554332 356666666666665543 5566666666666666 222 222 124555666666666666654
Q ss_pred CccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc--cChhhhCCCCCCEEecccCcCCCcCCccc
Q 015671 217 KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKRLKSLPSSL 292 (403)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 292 (403)
+..+..+..+++|+.|++++|......+..+. ++|++|++++|.++. +|..+..+++|+.|++++|.+.+..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 44445566666666666666544333222222 667777777777764 67788889999999999998776666666
Q ss_pred cCCCCCc----EEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCC
Q 015671 293 CKLKSLG----VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 293 ~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~ 357 (403)
..++.|+ .|++++|.+.+..+..+ ...+|+.|++++|.++.+|.. +..+++|+.|++++|+...
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6555565 89999988765544443 445899999999999977764 5789999999999997653
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=184.28 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=196.5
Q ss_pred ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCC
Q 015671 77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAE 153 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~ 153 (403)
.++.+.+.... ...+.+..|.++++|++|++++|.+. ...+..+.. ++|++|++++|.++.+|.. + .++
T Consensus 53 ~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 53 AVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred cCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 45555444333 33455668999999999999999874 122345666 9999999999999999875 4 799
Q ss_pred CceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671 154 KLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK 231 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (403)
+|++|++++|.+..+|. .+..+++|++|++++|..+. .++ ...+.++++|++|++++|.+.+..|..++.+++|++
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 99999999999999886 78899999999999985444 443 246788999999999999987777888999999999
Q ss_pred EeecCCCCCCCCccccc---CCCcEEEecCccCcccCh----hhhCCCCCCEEecccCcCCC----cCCccccCCCCCcE
Q 015671 232 LDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPS----SIESLLRLEYLDLSDCKRLK----SLPSSLCKLKSLGV 300 (403)
Q Consensus 232 L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~ 300 (403)
|++++|.. +.+|.... ++|+.|++++|.++.++. .....+.++.++++++.+.+ .+|..+..+++|+.
T Consensus 203 L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 203 LILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred ecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 99999764 55555432 899999999999986542 12456788899998887654 46777889999999
Q ss_pred EeecCCCCCcccCcc-cCCCCCCCEEEccCCCCcc
Q 015671 301 LNLYGCSNLQRLPEC-LGQLSSPITLGLTETNIER 334 (403)
Q Consensus 301 L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~ 334 (403)
|++++|.+. .+|.. +..+++|+.|++++|.+..
T Consensus 282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 999998877 55655 5899999999999999883
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.6e-20 Score=183.55 Aligned_cols=222 Identities=21% Similarity=0.155 Sum_probs=153.8
Q ss_pred CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671 102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI 181 (403)
Q Consensus 102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 181 (403)
.++++|++++|.+. .+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 46899999999873 5555444 899999999999999998 67899999999999999987 78999999
Q ss_pred ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI 261 (403)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (403)
++++| .+. .+|. .+++|+.|++++|.+ ..+|. .+++|++|++++|.. ..+|.. ..+|+.|++++|.+
T Consensus 107 ~Ls~N-~l~-~l~~-----~l~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l-~~l~~~-~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSN-PLT-HLPA-----LPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQL-ASLPAL-PSELCKLWAYNNQL 173 (622)
T ss_dssp EECSC-CCC-CCCC-----CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCC-SCCCCC-CTTCCEEECCSSCC
T ss_pred ECcCC-cCC-CCCC-----CCCCcCEEECCCCCC-CcCCC---CCCCCCEEECcCCcC-CCcCCc-cCCCCEEECCCCCC
Confidence 99998 333 3432 567788888888774 34565 347888888888643 334432 25666666666666
Q ss_pred cccChhhhCCCCCCEEecccCcCCCcCCccc-----------------cCCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671 262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSL-----------------CKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324 (403)
Q Consensus 262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 324 (403)
+.+| ..+++|+.|++++|.+.+ +|..+ ..+++|+.|++++|.+.+ +| ..+++|+.
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred CCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 6665 344566666666655432 22211 013567777777765544 44 34567777
Q ss_pred EEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 325 L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
|++++|.++.+|. .+++|+.|++++|... .+|.
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 7777777777775 5577778888777544 6665
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=9.5e-20 Score=174.97 Aligned_cols=207 Identities=21% Similarity=0.252 Sum_probs=107.0
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
++|++|++++|.++.+|....+++|++|++++|.++.+|... .+|++|++++| .+. .+| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~-~l~---~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLE-ELP---ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCS-SCC---CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCC-cCc---cccCCCCCCEEEC
Confidence 355555555555555553224555555555555555554322 35555555555 222 222 3555555666666
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP 289 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 289 (403)
++|.+.+ +|.. .++|+.|++++|.. ..+|.+.. ++|++|++++|.++.+|. .+++|+.|++++|.+.+ +|
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~ 273 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LP 273 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CC
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcC-CcccccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cC
Confidence 6555332 3331 23566666665533 24454322 666666666666665553 23566666666665443 33
Q ss_pred ccccCCCCCcEEeecCCCCCc--ccCccc-------------CCC-CCCCEEEccCCCCcccChhhhcCCCCCEEeccCC
Q 015671 290 SSLCKLKSLGVLNLYGCSNLQ--RLPECL-------------GQL-SSPITLGLTETNIERIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 290 ~~~~~l~~L~~L~l~~~~~~~--~~~~~l-------------~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c 353 (403)
.. +++|+.|++++|.+.+ .+|..+ ..+ ++|+.|++++|.++.+|.. +++|+.|++++|
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN 347 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS
T ss_pred cc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC
Confidence 32 3566666666665544 222111 112 3566666666666655543 466777777766
Q ss_pred cCCCcCCC
Q 015671 354 ERLQSLPS 361 (403)
Q Consensus 354 ~~l~~lp~ 361 (403)
... .+|.
T Consensus 348 ~l~-~lp~ 354 (454)
T 1jl5_A 348 HLA-EVPE 354 (454)
T ss_dssp CCS-CCCC
T ss_pred ccc-cccc
Confidence 433 4554
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.8e-21 Score=187.37 Aligned_cols=211 Identities=15% Similarity=0.043 Sum_probs=176.4
Q ss_pred CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671 131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL 208 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 208 (403)
++|++|++++|.+..++ ..+ .+++|++|++++|.+...++ +..+++|++|++++| .+. .++ ..++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~-~l~------~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQ-ELL------VGPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEE-EEE------ECTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCC-CCC------CCCCcCEE
Confidence 68999999999999886 345 79999999999999987765 899999999999999 343 333 23789999
Q ss_pred EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc-cChhhh-CCCCCCEEecccCcC
Q 015671 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE-LPSSIE-SLLRLEYLDLSDCKR 284 (403)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L~l~~~~~ 284 (403)
++++|.+.+..+. .+++|+.|++++|...+..|..+. ++|+.|++++|.++. .|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999987665443 468999999999877665565544 999999999999986 455554 799999999999997
Q ss_pred CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
.+. |. ...+++|+.|++++|.+.+ +|+.+..+++|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 655 33 3468999999999988776 445588999999999999999999999999999999999999876
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.6e-21 Score=173.41 Aligned_cols=200 Identities=18% Similarity=0.156 Sum_probs=124.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
.+|+.|+++++.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .+. .++ ...+.++++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQ-SLP-NGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCC-CCC-TTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccC-ccC-hhHhcCCcCCCEEEC
Confidence 555566665555555544334555555555555555442 4445555555555555 222 111 112444455555555
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCC
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLP 289 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~ 289 (403)
++|.+.+..+..++.+++|+.|+++ +|.++.++.. +..+++|+.|++++|.+.+..+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~----------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLA----------------------HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECC----------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHHHhccCCCCCEEECC----------------------CCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 5554433333334444445555444 4555555543 4778888888888888776656
Q ss_pred ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.++.|+.|+++.|...+.+|..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence 56778888999999888888777777788889999999888765 34567888888888888888875
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=4.1e-20 Score=167.06 Aligned_cols=195 Identities=22% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN 209 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 209 (403)
++++.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|++|++++| .+. .++ ....+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~---~~~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQ---VDGTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCC-EEE---CCSCCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccC-ccc---CCCCCCcCCEEE
Confidence 556677777777777776553 57778888888777653 56777888888888877 232 222 235677778888
Q ss_pred ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCC
Q 015671 210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLK 286 (403)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~ 286 (403)
+++|.+ ..+|..+..+++|+.|++++|......+..+. ++|++|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 84 Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 877764 45666666777777777777543322222221 4455555555555544432 3455556666666555443
Q ss_pred cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
..+..+..+++|+.|++++|.+. .+|..+...++|+.+++.+|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 32233445555666666554443 44445555555555555555544
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=9.2e-20 Score=163.16 Aligned_cols=199 Identities=21% Similarity=0.213 Sum_probs=110.1
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN 209 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 209 (403)
...++++++++.++.+|..+. .++++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~i~~-~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQ-TLPA-GIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCS-CCCT-TTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccC-eeCh-hhhcCCCCCCEEE
Confidence 346677777777777776543 567777777777777653 6677777777777776 233 3332 2356677777777
Q ss_pred ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC
Q 015671 210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP 289 (403)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 289 (403)
+++|.+....+..+..+++|+.|++++|......+ ..+..+++|++|++++|.+.+..+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------------------RVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---------------------HHhCcCcCCCEEECCCCcCCccCH
Confidence 77776544444445667777777777654322211 123444455555555544333322
Q ss_pred ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCc
Q 015671 290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSE 354 (403)
Q Consensus 290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 354 (403)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 3344455555555555444443333444555555555555555544432 3445555555555554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=7.7e-21 Score=174.29 Aligned_cols=216 Identities=15% Similarity=0.060 Sum_probs=175.5
Q ss_pred CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671 131 AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL 208 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 208 (403)
++|++|++++|.++.++. .+ .+++|++|++++|.+...+. +..+++|++|++++|. +. .++ ..++|++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~-~l~------~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQ-ELL------VGPSIETL 104 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EE-EEE------ECTTCCEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cc-ccc------CCCCcCEE
Confidence 689999999999998863 34 79999999999999988765 8999999999999983 33 232 34889999
Q ss_pred EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhh-hCCCCCCEEecccCcC
Q 015671 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSI-ESLLRLEYLDLSDCKR 284 (403)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~-~~l~~L~~L~l~~~~~ 284 (403)
++++|.+.+..+. .+++|+.|++++|......+..+. ++|++|++++|.++.++ ..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 9999886554433 478999999999776554443443 89999999999999664 344 5789999999999986
Q ss_pred CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC-CcCCC
Q 015671 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL-QSLPS 361 (403)
Q Consensus 285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~lp~ 361 (403)
.+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. ..+|.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 554 33 3358999999999988765 455688999999999999999999999999999999999999877 33433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=7.4e-22 Score=180.67 Aligned_cols=198 Identities=18% Similarity=0.100 Sum_probs=129.8
Q ss_pred CCCceEEEccCCCcc-cccccc--ccCCCCcEeecccccCccccCCCCCCCCCC-----CCCcEEEecCCCCCCccCccC
Q 015671 152 AEKLVLFEVPENDIE-QLWDCV--KHYSKLNQIIHAVCHRLIAKTPNPTLMPRL-----NKVVILNLRGSKSLKSLPSEI 223 (403)
Q Consensus 152 l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~ 223 (403)
+++|++|++++|.+. .+|..+ ..+++|++|++++|. +. .+| ..+..+ ++|++|++++|.+.+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WA-TRD--AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CS-SSS--SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Cc-chh--HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 556666666666665 244443 556666666666652 22 112 122222 566666666666555444556
Q ss_pred CCCCCCCEEeecCCCCCCCC--cccc--c--CCCcEEEecCccCccc---Chh-hhCCCCCCEEecccCcCCCcCC-ccc
Q 015671 224 FNLEFLTKLDLSGCSKLKRL--PEIS--S--GNISWLFLTGTAIKEL---PSS-IESLLRLEYLDLSDCKRLKSLP-SSL 292 (403)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~--~~~~--~--~~L~~L~l~~~~~~~l---~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~ 292 (403)
+.+++|++|++++|...+.. +... . ++|++|++++|.++.+ +.. +..+++|+.|++++|.+.+..| ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 66666666666665543321 1111 1 6666777777777633 322 3577899999999998877664 345
Q ss_pred cCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671 293 CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357 (403)
Q Consensus 293 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 357 (403)
..+++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..+++|++|++++|+..+
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 66889999999998876 6776665 889999999999998876 8889999999999997653
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.8e-19 Score=160.01 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=139.9
Q ss_pred CCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671 153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL 232 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (403)
.+.++++++++.++.+|..+. ++|++|++++|. +. .++ ...+.++++|++|++++|.+....+..+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LS-SLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CS-CCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CC-eeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 356777888777777776443 567777777762 32 222 1246666777777777766443323334556666666
Q ss_pred eecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671 233 DLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311 (403)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 311 (403)
++++ |.++.+|. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 91 ~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 91 WVTD----------------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp ECCS----------------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ECCC----------------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 6665 44444553 457889999999999998777777788999999999999988776
Q ss_pred cCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhc
Q 015671 312 LPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVE 380 (403)
Q Consensus 312 ~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~ 380 (403)
.+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|... .+|... +..+++|+.+....+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA--FDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT--TTTCTTCCEEECCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHH--hccccCCCEEEecCC
Confidence 66678999999999999999997775 4788999999999999654 455421 244566665443333
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=8e-20 Score=160.49 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=114.8
Q ss_pred CceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC-CCCCCccCccCCCCCCCCE
Q 015671 154 KLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG-SKSLKSLPSEIFNLEFLTK 231 (403)
Q Consensus 154 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 231 (403)
+|++|++++|.++.++. .+..+++|++|++++|..+. .++. ..+.++++|++|++++ |.+....+..+..+++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 44444444444444432 34444444444444442122 2221 1334444445555544 3322222233444455555
Q ss_pred EeecCCCCCCCCccccc-CCCc---EEEecCc-cCcccCh-hhhCCCCCC-EEecccCcCCCcCCccccCCCCCcEEeec
Q 015671 232 LDLSGCSKLKRLPEISS-GNIS---WLFLTGT-AIKELPS-SIESLLRLE-YLDLSDCKRLKSLPSSLCKLKSLGVLNLY 304 (403)
Q Consensus 232 L~l~~~~~~~~~~~~~~-~~L~---~L~l~~~-~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 304 (403)
|++++|.. ..+|.+.. .+|+ .|++++| .++.+|. .+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus 110 L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred EeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 55554332 22333211 3444 5555556 6666664 367888999 9999988865 566554444889999999
Q ss_pred CCC-CCcccCcccCCC-CCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcC
Q 015671 305 GCS-NLQRLPECLGQL-SSPITLGLTETNIERIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 305 ~~~-~~~~~~~~l~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
+|. +.+..+..+.++ ++|+.|++++|.++.+|.. .+++|+.|++++|..
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 985 655556678888 9999999999999988865 788999999988753
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.8e-21 Score=178.01 Aligned_cols=239 Identities=17% Similarity=0.087 Sum_probs=180.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccc--cccccc-------cCCCCcEeecccccCccccCCCCCCCCC
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQ--LWDCVK-------HYSKLNQIIHAVCHRLIAKTPNPTLMPR 201 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~--l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (403)
.+|++|+++++.+ .+|..+. ..|++|++++|.+.. ++..+. .+++|++|++++|. +.+.+|....+..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhc
Confidence 5577788888888 7776442 128888999988864 455544 79999999999994 3324554212388
Q ss_pred CCCCcEEEecCCCCCCccCccCCCC-----CCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc---cChhh--h
Q 015671 202 LNKVVILNLRGSKSLKSLPSEIFNL-----EFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE---LPSSI--E 269 (403)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~---l~~~~--~ 269 (403)
+++|++|++++|.+.+. |..++.+ ++|++|++++|...+..+..+. ++|++|++++|.+.. ++..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999987665 7666666 9999999999876655545544 999999999998753 34445 8
Q ss_pred CCCCCCEEecccCcCCC--cCC-ccccCCCCCcEEeecCCCCCcccC-cccCCCCCCCEEEccCCCCcccChhhhcCCCC
Q 015671 270 SLLRLEYLDLSDCKRLK--SLP-SSLCKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFVL 345 (403)
Q Consensus 270 ~l~~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L 345 (403)
.+++|+.|++++|.+.+ .++ ..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+. ++|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 276 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL 276 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence 89999999999998763 223 234578999999999999888764 456678999999999999999998776 899
Q ss_pred CEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhc
Q 015671 346 RYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVE 380 (403)
Q Consensus 346 ~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~ 380 (403)
++|++++|+..+ +|. +..+++|+.+....+
T Consensus 277 ~~L~Ls~N~l~~-~p~----~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 277 SVLDLSYNRLDR-NPS----PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEECCSSCCCS-CCC----TTTSCEEEEEECTTC
T ss_pred eEEECCCCCCCC-Chh----HhhCCCCCEEeccCC
Confidence 999999997654 454 456666666444433
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.4e-19 Score=165.18 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=87.1
Q ss_pred eeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671 133 VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212 (403)
Q Consensus 133 L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (403)
|++|+++++.++.+|....+++|++|++++|.+..++. +..+++|++|++++| .+..+..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-----~l~~~~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-----CCSCCGGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-----cCCCchhhcCCCCCCEEECCC
Confidence 33444444444444322234445555555554444443 444555555555554 111122344445555555555
Q ss_pred CCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcc
Q 015671 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS 291 (403)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 291 (403)
|.+.. ++. +..+++|+.|++++|.. ..++.+.. ++|+.|++++|.++.++. +..+++|+.|++++|.+.+ ++.
T Consensus 117 n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~- 190 (308)
T 1h6u_A 117 TQITD-VTP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP- 190 (308)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-
T ss_pred CCCCC-chh-hcCCCCCCEEECCCCcc-CcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-Chh-
Confidence 44322 222 44555555555555332 12222111 344444444444444443 4555566666666555433 222
Q ss_pred ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC
Q 015671 292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP 336 (403)
Q Consensus 292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 336 (403)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++..|
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 4455566666666555444332 455566666666665555443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.5e-19 Score=162.02 Aligned_cols=205 Identities=18% Similarity=0.159 Sum_probs=141.3
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccC
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHY 175 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l 175 (403)
+..+++|+.|+++++.+. ....+.. ++|++|++++|.+..++....+++|++|++++|.+..++. .+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~--------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK--------SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccccceeeeeeCCCCcc--------cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 456899999999998763 2234555 9999999999999988755589999999999999998865 57899
Q ss_pred CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671 176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255 (403)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 255 (403)
++|++|++++|. +. .++ ...+.++++|++|++++|.+.+..+..++.+++|+.|++++|.... ++.
T Consensus 109 ~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~---------- 174 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQ-SLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE---------- 174 (272)
T ss_dssp TTCCEEECTTSC-CC-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT----------
T ss_pred cCCCEEECCCCc-CC-ccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCH----------
Confidence 999999999993 33 333 2357889999999999998765555667889999999999865432 221
Q ss_pred ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-c
Q 015671 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-R 334 (403)
Q Consensus 256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~ 334 (403)
..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ .+++|+.|++..|.++ .
T Consensus 175 ----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 175 ----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred ----------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence 123445555555555555544444444555555555555554332 2334555555555554 4
Q ss_pred cChhhhc
Q 015671 335 IPESIIQ 341 (403)
Q Consensus 335 l~~~~~~ 341 (403)
+|.+++.
T Consensus 238 ip~~~~~ 244 (272)
T 3rfs_A 238 VRNSAGS 244 (272)
T ss_dssp BBCTTSC
T ss_pred ccCcccc
Confidence 4544443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=3.2e-19 Score=162.71 Aligned_cols=191 Identities=17% Similarity=0.244 Sum_probs=161.7
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT 230 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (403)
.+++|++|+++++.+..++ .+..+++|++|++++| .+. .++ .+..+++|++|++++|.+. .++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~-~~~---~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QIT-DLA---PLKNLTKITELELSGNPLK-NVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCC-CCG---GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCC-CCh---hHccCCCCCEEEccCCcCC-Cch-hhcCCCCCC
Confidence 5789999999999999886 6889999999999999 333 333 3888999999999999854 444 588999999
Q ss_pred EEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 231 KLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
.|++++|.. ..++.... ++|++|++++|.++.++. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus 111 ~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 999999764 44555444 999999999999998876 8899999999999998654 444 889999999999998876
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 310 QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|+..
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 6443 7889999999999999998874 889999999999999764
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=169.59 Aligned_cols=200 Identities=18% Similarity=0.074 Sum_probs=140.9
Q ss_pred CCCceEEEccCCCccc-ccccc--ccCCCCcEeecccccCccccCCCC--CCCCCCCCCcEEEecCCCCCCccCccCCCC
Q 015671 152 AEKLVLFEVPENDIEQ-LWDCV--KHYSKLNQIIHAVCHRLIAKTPNP--TLMPRLNKVVILNLRGSKSLKSLPSEIFNL 226 (403)
Q Consensus 152 l~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (403)
+++|++|++++|.+.. .|..+ ..+++|++|++++|.... ..+.. ..+..+++|++|++++|.+....+..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4456777777776664 34444 667777777777763211 22211 122356777777777777655555667777
Q ss_pred CCCCEEeecCCCCCCC--Ccc-c---ccCCCcEEEecCccCcccChh----hhCCCCCCEEecccCcCCCcCCccccCC-
Q 015671 227 EFLTKLDLSGCSKLKR--LPE-I---SSGNISWLFLTGTAIKELPSS----IESLLRLEYLDLSDCKRLKSLPSSLCKL- 295 (403)
Q Consensus 227 ~~L~~L~l~~~~~~~~--~~~-~---~~~~L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l- 295 (403)
++|++|++++|...+. ++. . ..++|++|++++|.++.++.. +..+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 7777777777654331 111 1 116777888888888755542 4788999999999999888777776666
Q ss_pred --CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 296 --KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 296 --~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|+..
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 69999999998877 6676663 899999999999998875 688899999999999765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=9.1e-19 Score=157.21 Aligned_cols=199 Identities=19% Similarity=0.133 Sum_probs=120.7
Q ss_pred CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
++|++|++++|.++.++. .+ .+++|++|++++|.+..++. .+..+++|++|++++|. +. .++ ...+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ-SLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC-EEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cC-ccC-hhhhcCCccccE
Confidence 455666666666555543 23 45666666666666655543 45566666666666652 22 111 124555666666
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCC-CCccccc--CCCcEEEecCccCcccC-hhhhCCCCCC----EEec
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK-RLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLE----YLDL 279 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~----~L~l 279 (403)
|++++|.+....+..++.+++|++|++++|.... .+|..+. ++|++|++++|.++.++ ..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 6666665444434345566666666666654433 1344333 66666666667776555 3444444554 7888
Q ss_pred ccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 280 SDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
++|.+.+.. .......+|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 185 s~n~l~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQ-PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEEC-TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccC-ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 888865443 33344558999999988877665666788899999999988877
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=3.7e-18 Score=154.20 Aligned_cols=198 Identities=19% Similarity=0.163 Sum_probs=165.6
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT 230 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (403)
+++++++++++++.++.+|..+. ++++.|++++|. +. .++ ...+.++++|++|++++|.+. .++. .+.+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LY-TFS-LATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CS-EEE-GGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CC-ccC-HHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCC
Confidence 57789999999999999987664 799999999983 33 222 236788999999999998854 4444 37899999
Q ss_pred EEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671 231 KLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 307 (403)
.|++++|. ++.+|.... ++|++|++++|.++.+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999965 456666544 89999999999999887 457899999999999999776666667889999999999998
Q ss_pred CCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 308 NLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
+....+..+..+++|+.|++++|.++.+|..+...++|+.|++++|+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8766666678899999999999999999999999999999999999743
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.3e-21 Score=182.85 Aligned_cols=240 Identities=14% Similarity=0.103 Sum_probs=147.6
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC------------CCCCCceEEEcc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN------------LSAEKLVLFEVP 161 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~------------~~l~~L~~L~l~ 161 (403)
...+..+++|++|++++|.+.+..+ ..+...+.. ++|++|++++|.+..+... ..+++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4567778899999999887742211 123344555 8888888888766544321 145677777777
Q ss_pred CCCccc-----cccccccCCCCcEeecccccCccccCCC--CCCCCCC---------CCCcEEEecCCCCC-CccC---c
Q 015671 162 ENDIEQ-----LWDCVKHYSKLNQIIHAVCHRLIAKTPN--PTLMPRL---------NKVVILNLRGSKSL-KSLP---S 221 (403)
Q Consensus 162 ~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~ 221 (403)
+|.+.. ++..+..+++|++|++++|.. ....+. ...+..+ ++|++|++++|.+. ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 776664 455666677777777777632 100000 0011122 55666666665543 2222 2
Q ss_pred cCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCc-----cc-ChhhhCCCCCCEEecccCcCC----CcCCcc
Q 015671 222 EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIK-----EL-PSSIESLLRLEYLDLSDCKRL----KSLPSS 291 (403)
Q Consensus 222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l-~~~~~~l~~L~~L~l~~~~~~----~~~~~~ 291 (403)
.+..+++|++|++++| .++ .+ +..+..+++|+.|++++|.+. ..+|..
T Consensus 182 ~l~~~~~L~~L~L~~n----------------------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQN----------------------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp HHHHCTTCCEEECCSS----------------------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred HHHhCCCcCEEECcCC----------------------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 3344555566655554 443 12 225667778888888887764 556666
Q ss_pred ccCCCCCcEEeecCCCCCcc----cCccc--CCCCCCCEEEccCCCCcc-----cChhh-hcCCCCCEEeccCCcCCCcC
Q 015671 292 LCKLKSLGVLNLYGCSNLQR----LPECL--GQLSSPITLGLTETNIER-----IPESI-IQHFVLRYLLLSYSERLQSL 359 (403)
Q Consensus 292 ~~~l~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~l 359 (403)
+..+++|+.|++++|.+.+. ++..+ ..+++|+.|++++|.++. +|..+ ..+++|++|++++|+..+..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77778888888888776654 45555 337788888888888875 77666 55788888888888765444
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2e-18 Score=160.42 Aligned_cols=234 Identities=19% Similarity=0.193 Sum_probs=145.4
Q ss_pred cEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccc-cc-cccccCCCCcE
Q 015671 105 RFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQ-LW-DCVKHYSKLNQ 180 (403)
Q Consensus 105 r~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~ 180 (403)
++++.+++.+ ..+|..+ ..++++|+|++|.++.+|.. + ++++|++|+|++|.+.. ++ ..+.++++|+.
T Consensus 12 ~~v~C~~~~L-------t~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKV-------TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTC-------CSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCC-------CccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 4555655554 2344433 25677777777777777653 3 57777777777777643 44 35667777666
Q ss_pred eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc----CCCcEEEe
Q 015671 181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFL 256 (403)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~L~~L~l 256 (403)
+...++..+. .++ ...+..+++|++|++++|.+....+..+....++..|++.++..+..++.... ..++.|++
T Consensus 84 ~l~~~~N~l~-~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 84 IRIEKANNLL-YIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEETTCC-EEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhcccCCccc-ccC-chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 5444433444 333 23566777777777777765443333344555667777776666666554432 45677777
Q ss_pred cCccCcccChhhhCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC-CCcc
Q 015671 257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET-NIER 334 (403)
Q Consensus 257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~ 334 (403)
++|.++.++..+....+|+.+.+.++...+.+|. .+..+++|+.|++++|.+.. +|. ..+.+|+.|.+.++ .++.
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCC
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCc
Confidence 7777777776666666777777776555666665 35677777777777765443 332 23556666665444 4566
Q ss_pred cChhhhcCCCCCEEeccC
Q 015671 335 IPESIIQHFVLRYLLLSY 352 (403)
Q Consensus 335 l~~~~~~~~~L~~L~l~~ 352 (403)
+| .+..+++|+.+++.+
T Consensus 239 lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CC-CTTTCCSCCEEECSC
T ss_pred CC-CchhCcChhhCcCCC
Confidence 76 366777777777754
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.7e-17 Score=166.30 Aligned_cols=247 Identities=18% Similarity=0.174 Sum_probs=192.7
Q ss_pred hcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccc---ccccccc
Q 015671 98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQ---LWDCVKH 174 (403)
Q Consensus 98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~---l~~~~~~ 174 (403)
+.....|+.|++.++.+.+ + .......|+.+.+.++.....+....+++|+.++++.|.+.. .+.....
T Consensus 324 ~~~~~~L~~L~l~~~~~~~-------~-~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQ-------F-PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp GGSCCCCSEEEEESCEESS-------C-CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccchhhhhhhcccccccC-------c-CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 4556677777777765431 1 111126788888888887776666678999999999998764 3456677
Q ss_pred CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CCC
Q 015671 175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GNI 251 (403)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L 251 (403)
+.+|+++++..+... .. ...+..+++|+.+++..+......+ ..+..+++++.++++.|......+.... +.+
T Consensus 396 ~~~L~~L~~~~~~~~--~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 396 TISLKYLDLSFNGVI--TM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp CSCCCEEECCSCSEE--EE--CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhccccccc--cc--cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 889999999887422 22 2356778999999998876555444 4467889999999999776555555444 899
Q ss_pred cEEEecCccCc--ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671 252 SWLFLTGTAIK--ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE 329 (403)
Q Consensus 252 ~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 329 (403)
+.|++++|.+. ..|..+..+++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+..+..+.++++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 99999988754 3667788999999999999998888888899999999999999998888888899999999999999
Q ss_pred CCCccc-ChhhhcC-CCCCEEeccCCcCC
Q 015671 330 TNIERI-PESIIQH-FVLRYLLLSYSERL 356 (403)
Q Consensus 330 ~~l~~l-~~~~~~~-~~L~~L~l~~c~~l 356 (403)
|.++.+ |..+..+ ++|+.|++++|+..
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999955 5567777 68999999999754
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=8.1e-18 Score=156.29 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=173.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE-Eec
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL-NLR 211 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L-~l~ 211 (403)
+.++.+++.++++|..+ .+++++|++++|+++.+|. .+.++++|++|++++|.... .++ ...+.++++++++ .+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~-~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE-ADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EEC-TTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccC-hhHhhcchhhhhhhccc
Confidence 46778889999999876 4689999999999999985 68999999999999995433 444 3467788888765 455
Q ss_pred CCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecC-ccCcccChh-hhCC-CCCCEEecccCcCC
Q 015671 212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTG-TAIKELPSS-IESL-LRLEYLDLSDCKRL 285 (403)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~-~~~~~l~~~-~~~l-~~L~~L~l~~~~~~ 285 (403)
.|.+....|..+..+++|+.|++++|.. ...+.... .++..+.+.+ +.++.++.. +..+ ..++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 5665544567788999999999999654 44444433 6677788764 677777743 3444 57899999999865
Q ss_pred CcCCccccCCCCCcEEeecCCCCCcccCc-ccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671 286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361 (403)
Q Consensus 286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 361 (403)
.++.......+|+.+++.+++..+.+|. .|.++++|+.|++++|+++.+|. ..+.+|+.|.+.+|..++.+|.
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence 5666666678999999998777777774 57899999999999999999986 3478999999999999999996
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=2.9e-18 Score=150.51 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=104.4
Q ss_pred CeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCC-cccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 132 EVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPEND-IEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 132 ~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
+|++|+++++.++.+|. .+ .+++|++|++++|. ++.++. .+..+++|++|++++|..+. .++ ...+.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~-~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID-PDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC-TTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC-HHHhCCCCCCCE
Confidence 45555555555554443 22 45555555555554 444432 44555555555555421222 222 123444555555
Q ss_pred EEecCCCCCCccCccCCCCCCCC---EEeecCCCCCCCCccccc---CCCc-EEEecCccCcccChhhhCCCCCCEEecc
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLT---KLDLSGCSKLKRLPEISS---GNIS-WLFLTGTAIKELPSSIESLLRLEYLDLS 280 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~---~~L~-~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 280 (403)
|++++|.+.+ +|. ++.+++|+ .|++++|..++.++.... ++|+ .|++++|.++.+|......++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 5555554322 443 44555555 555555433333333211 5555 6666666666666554444778888888
Q ss_pred cCc-CCCcCCccccCC-CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671 281 DCK-RLKSLPSSLCKL-KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET 330 (403)
Q Consensus 281 ~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 330 (403)
+|+ +.+..+..+..+ ++|+.|++++|.+.+ +|.. .+++|+.|.++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 885 444444556777 888888888876653 4433 5778888887765
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.9e-19 Score=165.13 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=157.8
Q ss_pred CCeeEEEecCCCCCCCCC-CCCCCCceEEEccCCCccc--cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPS-NLSAEKLVLFEVPENDIEQ--LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
..++.|+++++.+...+. .+.+++|++|++++|.+.. ++..+..+++|++|++++|. +.+..+ ..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~--~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIV--NTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHH--HHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHH--HHHhcCCCCCE
Confidence 567777777776655533 3378888999998888764 67778888999999998883 221222 24566888899
Q ss_pred EEecCCC-CCC-ccCccCCCCCCCCEEeecCCCCCCC--Cccccc--C-CCcEEEecCcc--C--cccChhhhCCCCCCE
Q 015671 208 LNLRGSK-SLK-SLPSEIFNLEFLTKLDLSGCSKLKR--LPEISS--G-NISWLFLTGTA--I--KELPSSIESLLRLEY 276 (403)
Q Consensus 208 L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~--~-~L~~L~l~~~~--~--~~l~~~~~~l~~L~~ 276 (403)
|++++|. +.. .++..+..+++|++|++++|..++. ++.... + +|++|++++|. + ..++..+..+++|+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 9999884 333 3566567788999999998844442 333333 6 88888888884 4 366777788999999
Q ss_pred EecccCc-CCCcCCccccCCCCCcEEeecCCCC-CcccCcccCCCCCCCEEEccCCCCcccChhhhcC-CCCCEEeccCC
Q 015671 277 LDLSDCK-RLKSLPSSLCKLKSLGVLNLYGCSN-LQRLPECLGQLSSPITLGLTETNIERIPESIIQH-FVLRYLLLSYS 353 (403)
Q Consensus 277 L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~-~~L~~L~l~~c 353 (403)
|++++|. +....+..+.++++|+.|++++|.. .......+..+++|+.|++++| ++.- .+..+ ..|+.|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS 303 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc
Confidence 9999998 5556677788889999999999852 2222235778899999999998 4411 11222 23555667888
Q ss_pred cCCCcCCCC
Q 015671 354 ERLQSLPSP 362 (403)
Q Consensus 354 ~~l~~lp~~ 362 (403)
...+..|..
T Consensus 304 ~l~~~~~~~ 312 (336)
T 2ast_B 304 HFTTIARPT 312 (336)
T ss_dssp CSCCTTCSS
T ss_pred cCccccCCc
Confidence 777777764
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=9.2e-21 Score=182.92 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=138.0
Q ss_pred CCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-----CCC-C-CCCCceEEEccCCCccc-----cc
Q 015671 103 KLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-----PSN-L-SAEKLVLFEVPENDIEQ-----LW 169 (403)
Q Consensus 103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-----p~~-~-~l~~L~~L~l~~~~~~~-----l~ 169 (403)
+|++|++++|.+.... ...++..+.. ++|++|++++|.+... ... . ..++|++|++++|.+.. ++
T Consensus 86 ~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAG--CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGG--HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHH--HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 4666666665542100 0122334444 5666666666554321 100 0 23456666666665553 23
Q ss_pred cccccCCCCcEeecccccCccccCCC-C-CCC-CCCCCCcEEEecCCCCCCc----cCccCCCCCCCCEEeecCCCCCCC
Q 015671 170 DCVKHYSKLNQIIHAVCHRLIAKTPN-P-TLM-PRLNKVVILNLRGSKSLKS----LPSEIFNLEFLTKLDLSGCSKLKR 242 (403)
Q Consensus 170 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~-~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~ 242 (403)
..+..+++|++|++++|. +....+. + ..+ ...++|++|++++|.+... ++..+..+++|++|++++|.....
T Consensus 164 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 445556666666666663 1100000 0 000 0234667777777665442 455555667777777777642221
Q ss_pred C-----cccc--cCCCcEEEecCccCcc-----cChhhhCCCCCCEEecccCcCCCcCCcccc-----CCCCCcEEeecC
Q 015671 243 L-----PEIS--SGNISWLFLTGTAIKE-----LPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----KLKSLGVLNLYG 305 (403)
Q Consensus 243 ~-----~~~~--~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~ 305 (403)
. +... .++|++|++++|.++. ++..+..+++|+.|++++|.+....+..+. ..++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 0 1111 1677777777777764 566666777788888877765433222221 235788888888
Q ss_pred CCCCcc----cCcccCCCCCCCEEEccCCCCccc-Chhhh----c-CCCCCEEeccCCcCC
Q 015671 306 CSNLQR----LPECLGQLSSPITLGLTETNIERI-PESII----Q-HFVLRYLLLSYSERL 356 (403)
Q Consensus 306 ~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~----~-~~~L~~L~l~~c~~l 356 (403)
|.+.+. ++..+..+++|+.|++++|.++.. +..+. . .++|++|++++|...
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 776654 455566678888888888877732 22222 1 568888888888655
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.2e-19 Score=167.74 Aligned_cols=216 Identities=17% Similarity=0.156 Sum_probs=170.4
Q ss_pred eeEEEecCCCCCCCCCCC-CC--CCceEEEccCCCccccccccccCCCCcEeecccccCcccc-CCCCCCCCCCCCCcEE
Q 015671 133 VKYLHWHGYPLKSFPSNL-SA--EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAK-TPNPTLMPRLNKVVIL 208 (403)
Q Consensus 133 L~~L~l~~~~~~~lp~~~-~l--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L 208 (403)
++.++++++.+. |..+ .+ .+++.|+++++.+...+..+..+++|++|++++|. +.+. ++ ..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~--~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLH--GILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHH--HHHTTBCCCSEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHH--HHHhhCCCCCEE
Confidence 555666655443 2222 34 78999999999999877777889999999999984 3211 33 246778999999
Q ss_pred EecCCCCCCccCccCCCCCCCCEEeecCCCCCCC--Cccccc--CCCcEEEecCc-cCcc--cChhhhCCC-CCCEEecc
Q 015671 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKR--LPEISS--GNISWLFLTGT-AIKE--LPSSIESLL-RLEYLDLS 280 (403)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~--~~L~~L~l~~~-~~~~--l~~~~~~l~-~L~~L~l~ 280 (403)
++++|.+....+..++.+++|++|++++|..++. ++.... ++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999987777777788899999999999855553 444333 99999999999 8884 677788999 99999999
Q ss_pred cCc--CC-CcCCccccCCCCCcEEeecCCC-CCcccCcccCCCCCCCEEEccCCC-Cc-ccChhhhcCCCCCEEeccCC
Q 015671 281 DCK--RL-KSLPSSLCKLKSLGVLNLYGCS-NLQRLPECLGQLSSPITLGLTETN-IE-RIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 281 ~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-l~-~l~~~~~~~~~L~~L~l~~c 353 (403)
+|. +. +.++..+.++++|+.|++++|. +.+..+..+..+++|+.|++++|. +. .....+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 994 33 4566677789999999999998 556677788999999999999995 43 22235788999999999999
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=3.6e-17 Score=144.60 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=113.0
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 132 EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 132 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
..+.++++++.++.+|..+. .++++|++++|.+..++ ..+..+++|++|++++| .+. .++ ...+.++++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQ-TLS-AGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCC-TTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCC-ccC-HhHhccCCcCCEEEC
Confidence 45677777777777776554 56777778777777654 35667777777777776 222 222 224566667777777
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCC
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLP 289 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~ 289 (403)
++|.+....+..+..+++|++|++++| .++.++.. +..+++|+.|++++|.+.+..+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN----------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC----------------------cCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 776655444444556666666666654 34444433 4566777777777776554444
Q ss_pred ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 45667777777777777766655556677777777777777765
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.8e-17 Score=162.40 Aligned_cols=186 Identities=23% Similarity=0.274 Sum_probs=132.2
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
.+|+.|+++++.++.+|..+ .++|++|++++|.++.+| ..+++|++|++++| .++ .+|. +.+ +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~-~ip~---l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLS-TLPE---LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCS-CCCC---CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCC-Ccch---hhc--CCCEEEC
Confidence 48999999999999998766 378999999999999888 56789999999998 444 3543 433 8899999
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
++|.+.+ +|. .+++|+.|++++|... .+|. ..++|+.|++++|.++.+|. +. ++|+.|++++|.+. .+|.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh
Confidence 9987554 666 5788888888886543 3555 33677777777777777776 44 77777777777654 5555
Q ss_pred cccCCCCC-------cEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhc
Q 015671 291 SLCKLKSL-------GVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQ 341 (403)
Q Consensus 291 ~~~~l~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~ 341 (403)
+.. +| +.|++++|.+. .+|..+..+++|+.|++++|.++ ..|..+..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 433 55 77777776554 45666666777777777777776 45554443
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=1.7e-20 Score=181.05 Aligned_cols=276 Identities=18% Similarity=0.138 Sum_probs=192.9
Q ss_pred ceeEEEecCCCcceee--cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCCC-----C
Q 015671 77 KIEGICLDMSKVKEFR--LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSF-----P 147 (403)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~l-----p 147 (403)
+++.+.+....+.... ..+..|..+++|++|++++|.+.+..+ ..+...+. . .+|++|++++|.++.. +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL--QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH--HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 4666655444333221 236788999999999999998742111 11222222 2 6899999999987652 3
Q ss_pred CCC-CCCCceEEEccCCCccccc-ccc----c-cCCCCcEeecccccCccccCC---CCCCCCCCCCCcEEEecCCCCCC
Q 015671 148 SNL-SAEKLVLFEVPENDIEQLW-DCV----K-HYSKLNQIIHAVCHRLIAKTP---NPTLMPRLNKVVILNLRGSKSLK 217 (403)
Q Consensus 148 ~~~-~l~~L~~L~l~~~~~~~l~-~~~----~-~l~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~ 217 (403)
..+ .+++|++|++++|.+.... ..+ . ..++|++|++++|. +. ... -...+..+++|++|++++|.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VT-SDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CB-TTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-Cc-HHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 333 4689999999999987431 222 2 36799999999993 22 110 01235567899999999987543
Q ss_pred cc-----CccCCCCCCCCEEeecCCCCCCC----Cccccc--CCCcEEEecCccCccc-----Chhhh-CCCCCCEEecc
Q 015671 218 SL-----PSEIFNLEFLTKLDLSGCSKLKR----LPEISS--GNISWLFLTGTAIKEL-----PSSIE-SLLRLEYLDLS 280 (403)
Q Consensus 218 ~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~--~~L~~L~l~~~~~~~l-----~~~~~-~l~~L~~L~l~ 280 (403)
.. +.....+++|+.|++++|..... ++.... ++|++|++++|.++.. ...+. ..++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 22234689999999999854332 333332 8999999999998732 22222 33699999999
Q ss_pred cCcCCCc----CCccccCCCCCcEEeecCCCCCcccCccc----CC-CCCCCEEEccCCCCc-----ccChhhhcCCCCC
Q 015671 281 DCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQRLPECL----GQ-LSSPITLGLTETNIE-----RIPESIIQHFVLR 346 (403)
Q Consensus 281 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~ 346 (403)
+|.+... ++..+..+++|+.|++++|.+.+..+..+ .. .++|+.|++++|.++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9997654 45667778999999999998765544333 22 779999999999998 6788888999999
Q ss_pred EEeccCCcCC
Q 015671 347 YLLLSYSERL 356 (403)
Q Consensus 347 ~L~l~~c~~l 356 (403)
+|++++|+..
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 9999999754
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=9.9e-17 Score=141.77 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=135.7
Q ss_pred CCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671 153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL 232 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (403)
...++++++++.+..+|..+. ++++.|++++|. +. .++ ...+.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LA-TLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CC-CCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cC-ccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 356678888888887776554 577788887772 22 222 1346677777777777777665555556667777777
Q ss_pred eecCCCCCCCCcccccCCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671 233 DLSGCSKLKRLPEISSGNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311 (403)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 311 (403)
++++| .++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 89 ~L~~n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 89 GLANN----------------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp ECTTS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ECCCC----------------------cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 77664 444444 3457899999999999997766555678899999999999988777
Q ss_pred cCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCc
Q 015671 312 LPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQS 358 (403)
Q Consensus 312 ~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~ 358 (403)
.+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+....
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66688999999999999999997765 678899999999999987654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=5.7e-20 Score=173.29 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=164.4
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccc-----cccccccCCCCcEeeccccc--CccccCCC-C----C
Q 015671 131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQ-----LWDCVKHYSKLNQIIHAVCH--RLIAKTPN-P----T 197 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~--~~~~~~~~-~----~ 197 (403)
..|++..+....+..++..+ .+++|++|++++|.+.. ++..+..+++|++|++++|. .+.+.+|. + .
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 33444444444444555544 57788888888888764 33457788899999998872 22212221 0 1
Q ss_pred CCCCCCCCcEEEecCCCCCC----ccCccCCCCCCCCEEeecCCCCCCCCccccc---------------CCCcEEEecC
Q 015671 198 LMPRLNKVVILNLRGSKSLK----SLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---------------GNISWLFLTG 258 (403)
Q Consensus 198 ~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------------~~L~~L~l~~ 258 (403)
.+.++++|++|++++|.+.. .++..+..+++|++|++++|......+.... ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 23677889999999988766 4666777889999999998765322111111 5899999999
Q ss_pred ccCc--ccC---hhhhCCCCCCEEecccCcCCC-----cCCccccCCCCCcEEeecCCCCC----cccCcccCCCCCCCE
Q 015671 259 TAIK--ELP---SSIESLLRLEYLDLSDCKRLK-----SLPSSLCKLKSLGVLNLYGCSNL----QRLPECLGQLSSPIT 324 (403)
Q Consensus 259 ~~~~--~l~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~ 324 (403)
|.++ .++ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+. ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 9886 444 456789999999999998662 23336788999999999999875 667888899999999
Q ss_pred EEccCCCCcc-----cChhhhc--CCCCCEEeccCCcCCC
Q 015671 325 LGLTETNIER-----IPESIIQ--HFVLRYLLLSYSERLQ 357 (403)
Q Consensus 325 L~l~~~~l~~-----l~~~~~~--~~~L~~L~l~~c~~l~ 357 (403)
|++++|.++. ++..+.. +++|++|++++|....
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9999999983 4666643 8999999999998766
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=6.5e-17 Score=158.39 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=152.3
Q ss_pred CCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEee
Q 015671 103 KLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII 182 (403)
Q Consensus 103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 182 (403)
+|+.|++++|.+. .+|..+. ++|++|++++|.++.+| -.+++|++|++++|.++.+|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-------~lp~~l~-~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-------SLPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-------CCCSCCC-TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCC-------ccCHhHc-CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 8999999999875 2444332 78999999999999999 357899999999999999887 554 999999
Q ss_pred cccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCc
Q 015671 183 HAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIK 262 (403)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 262 (403)
+++| .++ .+|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.. +.+|. +.++|+.|++++|.++
T Consensus 127 Ls~N-~l~-~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~-l~~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNN-QLT-MLPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPE-LPESLEALDVSTNLLE 193 (571)
T ss_dssp CCSS-CCS-CCCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSCCS
T ss_pred CCCC-cCC-CCCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC-CCcch-hhCCCCEEECcCCCCC
Confidence 9998 444 3443 67899999999988654 666 578999999999764 44777 4499999999999999
Q ss_pred ccChhhhCCCCC-------CEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCC
Q 015671 263 ELPSSIESLLRL-------EYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319 (403)
Q Consensus 263 ~l~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 319 (403)
.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9887 543 77 99999999865 688888889999999999999999888776554
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6.7e-17 Score=146.02 Aligned_cols=169 Identities=21% Similarity=0.210 Sum_probs=99.0
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT 230 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (403)
.+++|++|++++|.+..++ .+..+++|++|++++| .+..+..+.++++|++|++++|.+.. ++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-----~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKD-LSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-----ccCCCcccccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence 4667777777777777664 3666777777777777 22222226666777777777766433 333 66667777
Q ss_pred EEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc
Q 015671 231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ 310 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 310 (403)
.|++++|. ++.+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 116 ~L~L~~n~----------------------i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 116 SLSLEHNG----------------------ISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EEECTTSC----------------------CCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred EEECCCCc----------------------CCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 77776653 3333 2344555566666655554332 334555666666666655444
Q ss_pred ccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcC
Q 015671 311 RLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 311 ~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|+.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 332 5556666666666666665543 55566666666666543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=151.30 Aligned_cols=222 Identities=15% Similarity=0.083 Sum_probs=156.0
Q ss_pred CCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCC-CCCC---CCCCCceEEEccCCCcccc-c----cc
Q 015671 101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKS-FPSN---LSAEKLVLFEVPENDIEQL-W----DC 171 (403)
Q Consensus 101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~-lp~~---~~l~~L~~L~l~~~~~~~l-~----~~ 171 (403)
...++.+.+.++.+... ....+...+..++|++|++++|.+.. .|.. ..+++|++|++++|.+... + ..
T Consensus 63 ~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ--LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHH--HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHH--HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34567777777655210 00011111112668899998888764 3444 3578899999999888752 1 23
Q ss_pred cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCc--cC--ccCCCCCCCCEEeecCCCCCCCCccc-
Q 015671 172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKS--LP--SEIFNLEFLTKLDLSGCSKLKRLPEI- 246 (403)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~~- 246 (403)
+..+++|++|++++|. +. .++ ...++++++|++|++++|.+.+. ++ ..++.+++|++|++++|.. +.++..
T Consensus 141 ~~~~~~L~~L~Ls~n~-l~-~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 216 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAH-SP-AFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC 216 (310)
T ss_dssp TTBCSCCCEEEEECCS-SC-CCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred hhhccCCCEEEeeCCC-cc-hhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence 4578899999999883 33 222 24677888999999999876542 22 2236788999999998754 444432
Q ss_pred ---cc--CCCcEEEecCccCccc-ChhhhCC---CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccC
Q 015671 247 ---SS--GNISWLFLTGTAIKEL-PSSIESL---LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLG 317 (403)
Q Consensus 247 ---~~--~~L~~L~l~~~~~~~l-~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 317 (403)
.. ++|++|++++|.++.. |..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence 12 8999999999999866 6666665 69999999999876 6777664 7999999999887764 32 67
Q ss_pred CCCCCCEEEccCCCCc
Q 015671 318 QLSSPITLGLTETNIE 333 (403)
Q Consensus 318 ~l~~L~~L~l~~~~l~ 333 (403)
.+++|+.|++++|.++
T Consensus 292 ~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSCEECSSTTTS
T ss_pred hCCCccEEECcCCCCC
Confidence 8899999999999876
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1e-16 Score=144.86 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=92.2
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
++|++|+++++.+..++....+++|++|++++|.+..++. +..+++|++|++++| .+..+..+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-----~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-----CCCCGGGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-----cCCCChhhccCCCCCEEEC
Confidence 4455555555555555543356666666666666666654 666777777777766 2222334666677777777
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
++|.+.. + +.+..+++|+.|++++|... .+ ..+..+++|+.|++++|.+.+..+
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~----------------------~~-~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKIT----------------------DI-TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCC----------------------CC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCC----------------------cc-hhhccCCCCCEEEccCCccccchh-
Confidence 7766433 3 33556677777777765322 12 233444555555555554333222
Q ss_pred cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4455555555555544333 22 24555555555555555543
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.7e-18 Score=161.75 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=64.1
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-C-CeeEEEecCCCCCCCC-CCC-CC-----CCceEEEccCCCc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSFP-SNL-SA-----EKLVLFEVPENDI 165 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~-~L~~L~l~~~~~~~lp-~~~-~l-----~~L~~L~l~~~~~ 165 (403)
+..+...++|++|++++|.+.+..+ ..+...+.. + +|++|++++|.+.... ..+ .+ ++|++|++++|.+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3344444557777777766532111 011122222 3 5666666666655432 111 11 5666666666666
Q ss_pred cccc-c----ccccC-CCCcEeecccccCccccCCC---CCCCCC-CCCCcEEEecCCCCCC----ccCccCCCCC-CCC
Q 015671 166 EQLW-D----CVKHY-SKLNQIIHAVCHRLIAKTPN---PTLMPR-LNKVVILNLRGSKSLK----SLPSEIFNLE-FLT 230 (403)
Q Consensus 166 ~~l~-~----~~~~l-~~L~~L~l~~~~~~~~~~~~---~~~~~~-l~~L~~L~l~~~~~~~----~~~~~~~~l~-~L~ 230 (403)
...+ . .+..+ ++|++|++++|. +. ..+. ...+.. .++|++|++++|.+.. .++..+..++ +|+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 5432 1 23333 566666666662 22 1110 001222 2356666666655432 1222223333 566
Q ss_pred EEeecCCC
Q 015671 231 KLDLSGCS 238 (403)
Q Consensus 231 ~L~l~~~~ 238 (403)
+|++++|.
T Consensus 171 ~L~Ls~n~ 178 (362)
T 3goz_A 171 SLNLRGNN 178 (362)
T ss_dssp EEECTTSC
T ss_pred EeeecCCC
Confidence 66666554
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.3e-16 Score=135.65 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCCcEEEecCccCcc-cChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 249 GNISWLFLTGTAIKE-LPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
++|++|++++|.++. .+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++ .+..+++|+.|++
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 444444454555553 56667888999999999999887778888899999999999988566666 6888999999999
Q ss_pred cCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671 328 TETNIERIPESIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 356 (403)
++|.++.++ .+..+++|+.|++++|+.-
T Consensus 167 ~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999999887 6888999999999998743
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.6e-16 Score=157.18 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=112.1
Q ss_pred eeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671 133 VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212 (403)
Q Consensus 133 L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (403)
+..+.+....+..+...-.+.+|+.|++++|.+..++ .+..+++|+.|++++| .+. .+ ..+..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~-~~---~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLT-DI---KPLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCC-CC---GGGGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCC-CC---hhhccCCCCCEEECcC
Confidence 4444555555554443335777888888888877775 4677888888888877 222 22 2366777788888887
Q ss_pred CCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcc
Q 015671 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS 291 (403)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 291 (403)
|.+.. ++ .+..+++|+.|++++|... .++.+.. ++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--
Confidence 76433 33 4677777777777775533 3333332 5666666666666555 345556666666666665444333
Q ss_pred ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+..
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55556666666666554432 235555666666666655553
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.5e-16 Score=155.89 Aligned_cols=168 Identities=18% Similarity=0.215 Sum_probs=79.7
Q ss_pred cCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCC
Q 015671 99 TKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSK 177 (403)
Q Consensus 99 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 177 (403)
..+++|+.|++++|.+. .++ .+.. ++|+.|+|++|.+..++....+++|+.|+|++|.+..++ .+..+++
T Consensus 40 ~~L~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-------SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKK 110 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-------CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTT
T ss_pred hcCCCCCEEECcCCCCC-------CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCC
Confidence 34555666666655542 111 2333 555555555555555544224555555555555555543 4455555
Q ss_pred CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEe
Q 015671 178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFL 256 (403)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 256 (403)
|+.|++++| .+..+..+..+++|+.|++++|.+... +.++.+++|+.|++++|......| +.. ++|+.|++
T Consensus 111 L~~L~Ls~N-----~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 111 LKSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp CCEEECTTS-----CCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCEEEecCC-----CCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEEC
Confidence 555555555 222222344455555555555543332 234455555555555543332222 111 44444444
Q ss_pred cCccCcccChhhhCCCCCCEEecccCcC
Q 015671 257 TGTAIKELPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 284 (403)
++|.++.++ .+..+++|+.|++++|.+
T Consensus 183 s~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 183 SKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 444444432 244444444444444443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.5e-16 Score=132.41 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671 135 YLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS 213 (403)
Q Consensus 135 ~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 213 (403)
.++.+++.+..+|..+ .++|++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~-~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQ-SLPN-GVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccC-ccCh-hhcCCCCCcCEEECCCC
Confidence 4555555566665443 3356666666666655543 3455555555555555 222 2221 12344455555555554
Q ss_pred CCCCccCccCCCCCCCCEEeecC
Q 015671 214 KSLKSLPSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~ 236 (403)
.+....+..+..+++|+.|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCccCHhHhcCccCCCEEEcCC
Confidence 43322222234444444444444
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.5e-15 Score=130.08 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=95.6
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
++|++|+++++.++.++... .+++|++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+.++++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~-~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ-SLPN-GVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC-ccCH-hHhcCccCCCE
Confidence 57777888777777776543 57778888888777777654 4567777888888777 333 3321 24567777788
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLK 286 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~ 286 (403)
|++++|.+....+..+..+++|+.|++++|.. +.++. .+..+++|+.|++++|.+.+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l----------------------~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL----------------------KSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----------------------SCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcc----------------------ceeCHHHhccCCCccEEEecCCCeec
Confidence 88877765544444456677777777766432 22222 23455566666666654322
Q ss_pred cCCccccCCCCCcEEeecCCCCCcccCcccCCC
Q 015671 287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319 (403)
Q Consensus 287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 319 (403)
.++.|+.|+++.|.+.+.+|++++.+
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 24455555666555555555554443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=5.3e-16 Score=131.80 Aligned_cols=150 Identities=12% Similarity=0.128 Sum_probs=81.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
++|++|+++++.+..+|....+++|++|++++|.+..++ .+..+++|++|++++|. +.+.. +..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDK--IPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGG--SCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCccc--ChhhcCCCCCCEEEe
Confidence 344444454555555552224556666666666554443 45566677777776662 21011 235666677777777
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
++|.+....+..++.+++|+.|++++|..++.++ .+..+++|+.|++++|.+.. ++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----------------------~l~~l~~L~~L~l~~n~i~~-~~- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----------------------PLKTLPELKSLNIQFDGVHD-YR- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----------------------GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----------------------hhcCCCCCCEEECCCCCCcC-hH-
Confidence 7776655556666677777777777755343333 34445555555555555332 22
Q ss_pred cccCCCCCcEEeecCCCC
Q 015671 291 SLCKLKSLGVLNLYGCSN 308 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~ 308 (403)
.+..+++|+.|++++|.+
T Consensus 176 ~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TGGGCSSCCEEEECBC--
T ss_pred HhccCCCCCEEEeeCccc
Confidence 344555566666655543
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=6.5e-18 Score=157.70 Aligned_cols=245 Identities=15% Similarity=0.043 Sum_probs=173.1
Q ss_pred EEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-----CC-CCC-CceEEEccCCCcccc-ccccccC--
Q 015671 107 LKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-----NL-SAE-KLVLFEVPENDIEQL-WDCVKHY-- 175 (403)
Q Consensus 107 L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-----~~-~l~-~L~~L~l~~~~~~~l-~~~~~~l-- 175 (403)
+.++.|.+.| ..+..+.. .+|++|++++|.+...+. .+ .++ +|++|++++|.+... +..+..+
T Consensus 3 ~~ls~n~~~~------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSN------PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTTCC------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred cccccccchH------HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 5667777653 23333444 669999999999988763 33 566 899999999999865 3444443
Q ss_pred ---CCCcEeecccccCccccCCC--CCCCCCC-CCCcEEEecCCCCCCccCcc----CCC-CCCCCEEeecCCCCCCCCc
Q 015671 176 ---SKLNQIIHAVCHRLIAKTPN--PTLMPRL-NKVVILNLRGSKSLKSLPSE----IFN-LEFLTKLDLSGCSKLKRLP 244 (403)
Q Consensus 176 ---~~L~~L~l~~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~ 244 (403)
++|++|++++|. +.+..+. ...+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.......
T Consensus 77 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 77 AIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 999999999994 3311111 0113444 78999999999865443332 334 3699999999986553322
Q ss_pred ccc----c---CCCcEEEecCccCcccCh-----hhhCC-CCCCEEecccCcCCCc----CCccccC-CCCCcEEeecCC
Q 015671 245 EIS----S---GNISWLFLTGTAIKELPS-----SIESL-LRLEYLDLSDCKRLKS----LPSSLCK-LKSLGVLNLYGC 306 (403)
Q Consensus 245 ~~~----~---~~L~~L~l~~~~~~~l~~-----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~~ 306 (403)
... . .+|++|++++|.++.... .+... ++|+.|++++|.+... ++..+.. .++|+.|++++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 221 1 499999999999985553 34555 5999999999986652 4445554 459999999999
Q ss_pred CCCcccC----cccCCCCCCCEEEccCCCCc--------ccChhhhcCCCCCEEeccCCcCCCc
Q 015671 307 SNLQRLP----ECLGQLSSPITLGLTETNIE--------RIPESIIQHFVLRYLLLSYSERLQS 358 (403)
Q Consensus 307 ~~~~~~~----~~l~~l~~L~~L~l~~~~l~--------~l~~~~~~~~~L~~L~l~~c~~l~~ 358 (403)
.+.+..+ ..+..+++|+.|++++|.+. .++..+..+++|+.|++++|+....
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8766433 44578899999999999843 3344567788899999999986655
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.3e-16 Score=139.32 Aligned_cols=167 Identities=22% Similarity=0.199 Sum_probs=77.8
Q ss_pred ceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEee
Q 015671 155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDL 234 (403)
Q Consensus 155 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (403)
+..++++++.++.++ .+..+++|+.|++++| .+..+..+..+++|++|++++|.+.+ +++ +..+++|+.|++
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-----~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-----NIQSLAGMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCC-----CcccchHHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 333444444444443 3344444555554444 11112233444444555555444222 222 444555555555
Q ss_pred cCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc
Q 015671 235 SGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE 314 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 314 (403)
++|.. +.++....++|+.|++++|.++.++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+. .
T Consensus 93 ~~N~l-~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 93 NRNRL-KNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CSSCC-SCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CCCcc-CCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--H
Confidence 54322 2222222244444444445554443 35556666666666655433 22 345556666666666555443 3
Q ss_pred ccCCCCCCCEEEccCCCCccc
Q 015671 315 CLGQLSSPITLGLTETNIERI 335 (403)
Q Consensus 315 ~l~~l~~L~~L~l~~~~l~~l 335 (403)
.+..+++|+.|++++|.++..
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 455566666666666655533
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=2.5e-17 Score=163.87 Aligned_cols=88 Identities=13% Similarity=-0.016 Sum_probs=46.8
Q ss_pred hhCCCCCCEEecccCc--CCCcCCccc-cCCCCCcEEeecCCCCCc-ccCcccCCCCCCCEEEccCCCCc--ccChhhhc
Q 015671 268 IESLLRLEYLDLSDCK--RLKSLPSSL-CKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPITLGLTETNIE--RIPESIIQ 341 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~ 341 (403)
+..+++|+.|++++|. +....+..+ ..+++|+.|++++|.+.+ .++..+.++++|+.|++++|.++ .++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3445555555554432 122111112 235566666666665544 23344456666777777776665 24444456
Q ss_pred CCCCCEEeccCCcC
Q 015671 342 HFVLRYLLLSYSER 355 (403)
Q Consensus 342 ~~~L~~L~l~~c~~ 355 (403)
+++|+.|++++|+.
T Consensus 512 l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 512 LPSLRYLWVQGYRA 525 (592)
T ss_dssp CSSCCEEEEESCBC
T ss_pred cCccCeeECcCCcC
Confidence 66677777776663
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=4.1e-15 Score=128.54 Aligned_cols=66 Identities=24% Similarity=0.214 Sum_probs=37.6
Q ss_pred hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 344555555555555555444555555566666666665555555555556666666666666554
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=125.69 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=93.8
Q ss_pred CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 249 GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
++|+.|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 455555555566666664 6789999999999999988777777899999999999999999888899999999999999
Q ss_pred cCCCCccc-ChhhhcCCCCCEEeccCCcCCCc
Q 015671 328 TETNIERI-PESIIQHFVLRYLLLSYSERLQS 358 (403)
Q Consensus 328 ~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~ 358 (403)
++|.++.+ |..+..+++|+.|++++|+....
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999976 77889999999999999986543
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=9.5e-17 Score=159.71 Aligned_cols=269 Identities=14% Similarity=0.002 Sum_probs=185.0
Q ss_pred hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC----CCCCCC-CCCCceEEEccCCCccccc
Q 015671 96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK----SFPSNL-SAEKLVLFEVPENDIEQLW 169 (403)
Q Consensus 96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~----~lp~~~-~l~~L~~L~l~~~~~~~l~ 169 (403)
..+.++++|++|++++|.+. .++..+.. ++|+.|+++++... ..+..+ .+++|+.|++.++....+|
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~ 286 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEIL-------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGG-------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG
T ss_pred HHHhhCCCCcEEeccCccHH-------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH
Confidence 34567899999999998763 34444444 89999999864321 222333 6889999999988777788
Q ss_pred cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecC----------CCC
Q 015671 170 DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG----------CSK 239 (403)
Q Consensus 170 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------~~~ 239 (403)
..+..+++|++|++++|. +.+... ...+..+++|++|++.++.....++.....+++|++|++++ |..
T Consensus 287 ~~~~~~~~L~~L~Ls~~~-l~~~~~-~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYAL-LETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGCCEEEETTCC-CCHHHH-HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHhhcCCCcEEecCCCc-CCHHHH-HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 888899999999999985 321111 12356789999999984322223344345688999999994 555
Q ss_pred CCCC--ccccc--CCCcEEEecCccCc-ccChhhh-CCCCCCEEeccc---CcCCCcC------CccccCCCCCcEEeec
Q 015671 240 LKRL--PEISS--GNISWLFLTGTAIK-ELPSSIE-SLLRLEYLDLSD---CKRLKSL------PSSLCKLKSLGVLNLY 304 (403)
Q Consensus 240 ~~~~--~~~~~--~~L~~L~l~~~~~~-~l~~~~~-~l~~L~~L~l~~---~~~~~~~------~~~~~~l~~L~~L~l~ 304 (403)
++.. +.... ++|++|.++++.++ ..+..+. .+++|+.|++++ |...+.. +..+..+++|+.|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 5432 22121 89999999888877 3334444 489999999973 2233332 2335668999999998
Q ss_pred CCC--CCcccCccc-CCCCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCC--------cCCC-CeEeccCCC
Q 015671 305 GCS--NLQRLPECL-GQLSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQ--------SLPS-PLFLARGCL 370 (403)
Q Consensus 305 ~~~--~~~~~~~~l-~~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~--------~lp~-~~l~i~~c~ 370 (403)
+|. +.+..+..+ ..+++|+.|++++|.++ .++..+..+++|++|++++|+... .+|. ..+++.+|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 765 344333333 35889999999999998 567677889999999999998432 2333 367777776
Q ss_pred CCCC
Q 015671 371 AMQP 374 (403)
Q Consensus 371 ~l~~ 374 (403)
++.
T Consensus 525 -it~ 527 (592)
T 3ogk_B 525 -ASM 527 (592)
T ss_dssp -CCT
T ss_pred -CCH
Confidence 443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=1.2e-14 Score=125.63 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEE
Q 015671 199 MPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYL 277 (403)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L 277 (403)
+..+++|+.|++++|.+....|..+.++++|+.|++++|. ++.+|.. +..+++|+.|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----------------------l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----------------------ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEE
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc----------------------CCccCHhHccCCCCCCEE
Confidence 3444445555555544443334445555555555555432 2223322 3455556666
Q ss_pred ecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 278 DLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 278 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666555554555556666666666666655555555666666666666666654
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.2e-18 Score=171.41 Aligned_cols=191 Identities=19% Similarity=0.179 Sum_probs=117.6
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT 230 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (403)
..++|+.|++++|.++.+|..++++++|+.|+++++..+. ..+.. +..+...+..|..++.+++|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~-~l~~l-------------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-TIILL-------------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHH-------------HHHHCTGGGHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhh-hHHHH-------------HHhcccccCCHHHHHHHHhcc
Confidence 4678888899999998899889999999999887663211 11100 000011223333344444444
Q ss_pred EEe-ecCCCCCCCCcc----------cccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCc
Q 015671 231 KLD-LSGCSKLKRLPE----------ISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLG 299 (403)
Q Consensus 231 ~L~-l~~~~~~~~~~~----------~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 299 (403)
.|+ ++.+ ....++. .....|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..++++++|+
T Consensus 413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 444 2221 0111110 001456667777777777765 777777777777777655 6677777777777
Q ss_pred EEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc--ChhhhcCCCCCEEeccCCcCCCcCC
Q 015671 300 VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI--PESIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 300 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
.|++++|.+.+ +| .+..+++|+.|++++|.++.+ |..++.+++|+.|++++|+..+..|
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 77777766655 55 677777777777777777765 6677777777777777776554443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=2.7e-14 Score=123.41 Aligned_cols=132 Identities=20% Similarity=0.175 Sum_probs=103.3
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEeccc
Q 015671 203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSD 281 (403)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 281 (403)
++|+.|++++|.+....+..+..+++|+.|++++ |.++.+ |..+..+++|++|++++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~----------------------N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN----------------------NQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS----------------------SCCCEECTTTTTTCSSCCEEECCS
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC----------------------CcCCCcCHHHhhCCcCCCEEECCC
Confidence 4566666666654433334455566666666655 455544 56788999999999999
Q ss_pred CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671 282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 356 (403)
|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99775555557889999999999999988888899999999999999999997765 4788999999999999753
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=3.4e-14 Score=123.52 Aligned_cols=131 Identities=22% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEeccc
Q 015671 203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSD 281 (403)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~ 281 (403)
++|++|++++|.+.+..|..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----------------------l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----------------------LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----------------------CCCcChhhcccCCCcCEEECCC
Confidence 667777777777666556666677777777777654 333332 234555566666655
Q ss_pred CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671 282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 356 (403)
|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5544433334455556666666655443 445555556666666666666665442 3455566666666666543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=1.4e-14 Score=135.05 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=110.8
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccc-cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEec
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVK-HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR 211 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 211 (403)
+.++++++.++.+|..+ ...++.|++++|.++.++. .+. .+++|+.|++++| .+. .++ ...+.++++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~-~i~-~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLN-FIS-SEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCC-EEC-TTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCC-ccC-hhhccCCCCCCEEECC
Confidence 46777787788887654 2357778888888777654 344 6777777777776 232 222 1246666777777777
Q ss_pred CCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
+|.+....+..+..+++|+.|++++| .++.+ |..+..+++|+.|++++|.+.. +|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N----------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~ 153 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN----------------------HIVVVDRNAFEDMAQLQKLYLSQNQISR-FPV 153 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS----------------------CCCEECTTTTTTCTTCCEEECCSSCCCS-CCG
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC----------------------cccEECHHHhCCcccCCEEECCCCcCCe-eCH
Confidence 76644433444556666666666653 34433 3456778888888888887554 444
Q ss_pred c-c---cCCCCCcEEeecCCCCCcccCcccCCCCC--CCEEEccCCCCc
Q 015671 291 S-L---CKLKSLGVLNLYGCSNLQRLPECLGQLSS--PITLGLTETNIE 333 (403)
Q Consensus 291 ~-~---~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~ 333 (403)
. + ..+++|+.|+|++|.+....+..+..++. ++.|++.+|.+.
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3 3 46788888888887766554455566665 377888888776
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=2.9e-15 Score=133.18 Aligned_cols=146 Identities=20% Similarity=0.235 Sum_probs=87.8
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 210 (403)
++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|++++| .+. .++ .+.. ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~-~l~---~~~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLK-NLN---GIPS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCS-CCT---TCCC-SSCCEEEC
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccC-CcC---cccc-CcccEEEc
Confidence 6777777777777777633356777777777777776665 667777777777776 222 232 2333 66677777
Q ss_pred cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671 211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS 290 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 290 (403)
++|.+.+ ++ .++.+++|+.|++++| .++.++ .+..+++|+.|++++|.+.+. .
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N----------------------~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNN----------------------KLKSIV-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTS----------------------CCCBCG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCC----------------------cCCCCh-HHccCCCCCEEECCCCcCcch--H
Confidence 7665433 33 3556666666666664 344443 355566666666666654443 3
Q ss_pred cccCCCCCcEEeecCCCCCc
Q 015671 291 SLCKLKSLGVLNLYGCSNLQ 310 (403)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~~~ 310 (403)
.+..+++|+.|++++|.+..
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 45556666666666655443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=4.9e-14 Score=122.51 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=74.1
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (403)
+.++.+++.+..+|..+. ++|++|++++|.+..+ +..+..+++|++|++++|. +. .++. ..+..+++|++|++++
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~-~i~~-~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LG-ALPV-GVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCT-TTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CC-CcCh-hhcccCCCcCEEECCC
Confidence 445666666666665443 5566666666666654 3445555556666655552 22 2221 2334455555555555
Q ss_pred CCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccc
Q 015671 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL 292 (403)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 292 (403)
|.+....+..+..+++|+.|++++ |.++.+|..+..+++|+.|++++|.+.+..+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCC----------------------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CcCCccChhHhCcchhhCeEeccC----------------------CcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 443332223333444444444443 3344445455555555555555555443333334
Q ss_pred cCCCCCcEEeecCCCCC
Q 015671 293 CKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 293 ~~l~~L~~L~l~~~~~~ 309 (403)
..+++|+.|++++|++.
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 45555555555555443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.4e-14 Score=134.95 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=122.2
Q ss_pred cEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCC---CCCCceEEEccCCCccccc-cccccCCCCcE
Q 015671 105 RFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNL---SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQ 180 (403)
Q Consensus 105 r~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~---~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~ 180 (403)
++++++++.+. .+|..+. ..++.|+|++|.++.++... .+++|++|++++|.+..++ ..+..+++|++
T Consensus 21 ~~l~c~~~~l~-------~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLP-------NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCS-------SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcC-------ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 67888887763 4554332 67899999999999887543 6899999999999999886 57899999999
Q ss_pred eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc------cCCCcEE
Q 015671 181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS------SGNISWL 254 (403)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~L~~L 254 (403)
|++++|. +. .++ ...+.++++|+.|++++|.+....+..+..+++|+.|++++|.. ..+|... .++|+.|
T Consensus 93 L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 93 LDLSSNH-LH-TLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp EECCSSC-CC-EEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEE
T ss_pred EECCCCc-CC-cCC-HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEE
Confidence 9999993 44 333 23678899999999999997776677889999999999998653 3344322 1556666
Q ss_pred EecCccCcccCh-hhhCCCC--CCEEecccCcC
Q 015671 255 FLTGTAIKELPS-SIESLLR--LEYLDLSDCKR 284 (403)
Q Consensus 255 ~l~~~~~~~l~~-~~~~l~~--L~~L~l~~~~~ 284 (403)
++++|.++.+|. .+..++. ++.|++++|++
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 666666555552 3344443 25555555543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.5e-17 Score=160.94 Aligned_cols=191 Identities=17% Similarity=0.080 Sum_probs=135.7
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCC-------------cc-ccccccccCCCCcEee-cccccCccccCC
Q 015671 131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPEND-------------IE-QLWDCVKHYSKLNQII-HAVCHRLIAKTP 194 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~~~~~ 194 (403)
++|+.|++++|.++.+|..+ .+++|+.|+++++. .. ..|..++.+++|+.|+ ++.+. +. .++
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~-~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD-DLR 426 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH-HHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc-hhh
Confidence 88999999999999999888 78999999986653 12 3456677788888887 44431 11 110
Q ss_pred C-------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh
Q 015671 195 N-------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS 267 (403)
Q Consensus 195 ~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 267 (403)
. +..+. ...|+.|++++|.+. .+|. ++.++ +|+.|++++|.++.+|..
T Consensus 427 ~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~-~lp~-~~~l~----------------------~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 427 SKFLLENSVLKME-YADVRVLHLAHKDLT-VLCH-LEQLL----------------------LVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHH-HTTCSEEECTTSCCS-SCCC-GGGGT----------------------TCCEEECCSSCCCCCCGG
T ss_pred hhhhhcccccccC-ccCceEEEecCCCCC-CCcC-ccccc----------------------cCcEeecCcccccccchh
Confidence 0 00000 012455555554432 2343 44444 455555555667778888
Q ss_pred hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc-CcccCCCCCCCEEEccCCCCcccChh----hhcC
Q 015671 268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-PECLGQLSSPITLGLTETNIERIPES----IIQH 342 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~l~~~----~~~~ 342 (403)
++.+++|+.|++++|.+.+ +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.++.+|.. ...+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 9999999999999998765 67 7889999999999999888776 88999999999999999999976653 3458
Q ss_pred CCCCEEec
Q 015671 343 FVLRYLLL 350 (403)
Q Consensus 343 ~~L~~L~l 350 (403)
|+|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 89998864
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=1.2e-13 Score=116.62 Aligned_cols=130 Identities=20% Similarity=0.141 Sum_probs=86.4
Q ss_pred CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh--hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS--IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 307 (403)
++++++++ .++.+|.....++++|++++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 34444442 23444443334556666666666666542 6777777777777777776667777777777777777777
Q ss_pred CCcccCcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCC
Q 015671 308 NLQRLPECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
+.+..+..+.++++|+.|++++|.++.+ |..+..+++|++|++++|+.....+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7776666677777778888877777743 5566777777788877776654433
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=5.5e-16 Score=154.24 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=54.4
Q ss_pred CCCcEEEecCccCccc-Chhh-hCCCCCCEEecc-----cCcCCCcCC------ccccCCCCCcEEeecCCCCCcccCcc
Q 015671 249 GNISWLFLTGTAIKEL-PSSI-ESLLRLEYLDLS-----DCKRLKSLP------SSLCKLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l-~~~~-~~l~~L~~L~l~-----~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
++|+.|.+.++.++.. +..+ ..+++|+.|+++ +|...+..| ..+..+++|+.|++++ .+.+..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4555555544444411 1122 246677777776 233233222 1134456666666655 333332233
Q ss_pred cCC-CCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcC
Q 015671 316 LGQ-LSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 316 l~~-l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~ 355 (403)
+.. +++|+.|++++|.++ .++.....+++|+.|++++|+.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 332 666777777777765 2332235567777777777765
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.2e-13 Score=115.04 Aligned_cols=126 Identities=22% Similarity=0.227 Sum_probs=100.7
Q ss_pred CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
+.+++++ ..++.+|.....++++|++++|.++.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 13 ~~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4555555 334455554446777777777888888888888999999999999887766677888999999999998888
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671 310 QRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL 356 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 356 (403)
+..+..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|+..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8777788899999999999999997776 4678899999999998753
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=7.7e-14 Score=115.14 Aligned_cols=136 Identities=24% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCCCcEEEecCCCCC-CccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecc
Q 015671 202 LNKVVILNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLS 280 (403)
Q Consensus 202 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 280 (403)
.++|++|++++|.+. +.+|..+..+++|+.|++++|. ++.+ ..+..+++|+.|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----------------------LISV-SNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----------------------CCCC-SSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----------------------CCCh-hhhccCCCCCEEECc
Confidence 367788888888765 4677766777888888887754 2223 345567777777777
Q ss_pred cCcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh----hhhcCCCCCEEeccCCcC
Q 015671 281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE----SIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~c~~ 355 (403)
+|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7776665666666677777777777766553 22567778888888888888877665 667788888888887753
Q ss_pred CCcCCC
Q 015671 356 LQSLPS 361 (403)
Q Consensus 356 l~~lp~ 361 (403)
..+|.
T Consensus 160 -~~~~~ 164 (168)
T 2ell_A 160 -QEAPD 164 (168)
T ss_dssp -CBCCS
T ss_pred -hhccc
Confidence 34443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=1.4e-13 Score=113.61 Aligned_cols=141 Identities=22% Similarity=0.225 Sum_probs=100.7
Q ss_pred ccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCc
Q 015671 173 KHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS 252 (403)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 252 (403)
...++|+.|++++|....+.+|. .+..+++|++|++++|.+... ..++.+++|+.|++++|.....
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~---------- 86 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG---------- 86 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC----------
T ss_pred CCcccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH----------
Confidence 44689999999999533124543 468889999999999986554 6688889999999988653322
Q ss_pred EEEecCccCcccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCcEEeecCCCCCcccC---cccCCCCCCCEEEcc
Q 015671 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLGVLNLYGCSNLQRLP---ECLGQLSSPITLGLT 328 (403)
Q Consensus 253 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 328 (403)
+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 87 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 87 -----------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp -----------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred -----------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 445555677788888877765442 12566777888888888877655444 367778888888888
Q ss_pred CCCCcccChh
Q 015671 329 ETNIERIPES 338 (403)
Q Consensus 329 ~~~l~~l~~~ 338 (403)
+|.+..+|..
T Consensus 156 ~n~~~~~~~~ 165 (168)
T 2ell_A 156 DREDQEAPDS 165 (168)
T ss_dssp ETTSCBCCSS
T ss_pred CCChhhcccc
Confidence 8887777653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=6.2e-15 Score=149.34 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT 230 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (403)
.+..|+.|+|++|.+..+|..+..+++|++|++++| .+. .+|. .+.++++|++|++++|.+. .+|..++.+++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLT-ELPA--EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCS-CCCG--GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCc-ccCh--hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 466666666666666666655556666666666666 233 3332 3455566666666665543 4555555555555
Q ss_pred EEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCC-CcEEeecCCCCC
Q 015671 231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKS-LGVLNLYGCSNL 309 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~ 309 (403)
.|++++ |.++.+|..++.+++|+.|++++|.+.+.+|..+..+.. +..+++++|.+.
T Consensus 297 ~L~L~~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 297 YFYFFD----------------------NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp EEECCS----------------------SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCC----------------------CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 555555 445566666777777777777777777666665443221 223566776666
Q ss_pred cccCcccCCCCCCCEEEccCC
Q 015671 310 QRLPECLGQLSSPITLGLTET 330 (403)
Q Consensus 310 ~~~~~~l~~l~~L~~L~l~~~ 330 (403)
+.+|.. |+.|+++.|
T Consensus 355 ~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 355 IPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCCCC---------------
T ss_pred CcCccc------cceeEeecc
Confidence 666543 344455544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=6.6e-14 Score=113.10 Aligned_cols=128 Identities=23% Similarity=0.150 Sum_probs=96.8
Q ss_pred CCCCcEEEecCCCCC-CccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecc
Q 015671 202 LNKVVILNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLS 280 (403)
Q Consensus 202 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 280 (403)
.++|+.|++++|.+. +.+|..++.+++|+.|++++|. ++.+ ..+..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence 366788888888765 4677767777888888877754 3333 456677888888888
Q ss_pred cCcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh----hhhcCCCCCEEeccC
Q 015671 281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE----SIIQHFVLRYLLLSY 352 (403)
Q Consensus 281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~ 352 (403)
+|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8887776777777788888888888877663 34677888899999999998887765 678889999988763
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=1e-15 Score=152.22 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=15.4
Q ss_pred CCCcEEEecCccCcc--cChhhhCCCCCCEEecccC
Q 015671 249 GNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDC 282 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~ 282 (403)
++|+.|++++|.++. ++..+..+++|+.|++.+|
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 455555555544431 1222334455555555544
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=1.5e-12 Score=108.39 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=84.8
Q ss_pred CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN 308 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 308 (403)
+.++++++ .+..+|....++++.|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 10 ~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34444432 23333333335556666666666655543 46778888888888776654445567788888888888777
Q ss_pred CcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCCc
Q 015671 309 LQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQS 358 (403)
Q Consensus 309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~ 358 (403)
.+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 766666677788888888888888877664 36678888888888875543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=4.3e-13 Score=111.54 Aligned_cols=103 Identities=18% Similarity=0.100 Sum_probs=72.6
Q ss_pred CCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc--ccCCCCCCCEEEc
Q 015671 250 NISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE--CLGQLSSPITLGL 327 (403)
Q Consensus 250 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l 327 (403)
+|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+ +.+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEe
Confidence 455555555555555 4566777888888888776543333346778888888888766 44554 6777888888888
Q ss_pred cCCCCcccChh----hhcCCCCCEEeccCCc
Q 015671 328 TETNIERIPES----IIQHFVLRYLLLSYSE 354 (403)
Q Consensus 328 ~~~~l~~l~~~----~~~~~~L~~L~l~~c~ 354 (403)
++|.++.+|.. +..+++|+.|++++|.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888877764 7788888888888775
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.9e-13 Score=109.22 Aligned_cols=130 Identities=20% Similarity=0.144 Sum_probs=85.6
Q ss_pred cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE
Q 015671 174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 253 (403)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 253 (403)
..++|+.|++++|....+.+|. .+..+++|++|++++|.+... ..++.+++|+.|++++|...+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~----------- 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG----------- 79 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-----------
T ss_pred CCccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-----------
Confidence 4588999999999433124543 678899999999999986554 5678889999999988654332
Q ss_pred EEecCccCcccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCcEEeecCCCCCcccC---cccCCCCCCCEEEcc
Q 015671 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLGVLNLYGCSNLQRLP---ECLGQLSSPITLGLT 328 (403)
Q Consensus 254 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 328 (403)
+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 80 ----------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 ----------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ----------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ----------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 333444566666666666664442 22455666666666666665544433 345666666666654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=1.4e-12 Score=110.01 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=46.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEec
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR 211 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 211 (403)
++++++++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|++++|. +. .++ +..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LT-GIE-PNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CC-CBC-TTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CC-CcC-HhHcCCcccCCEEECC
Confidence 456666666666665442 256666666666655543 24555555555555551 21 110 1234444444444444
Q ss_pred CCCCCCccCccCCCCCCCCEEeecC
Q 015671 212 GSKSLKSLPSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (403)
+|.+.+..+..+..+++|++|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCC
Confidence 4443333333333444444444443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=4.9e-13 Score=135.50 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=114.3
Q ss_pred ccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCC
Q 015671 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKL 295 (403)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 295 (403)
..+..+..+++|+.|++++|... .+|...+ ++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 34566788999999999997754 6665544 9999999999999999999999999999999999976 789999999
Q ss_pred CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCC-CCCEEeccCCcCCCcCCCC
Q 015671 296 KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHF-VLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 296 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~-~L~~L~l~~c~~l~~lp~~ 362 (403)
++|+.|+|++|.+ +.+|..+..+++|+.|+|++|.++ .+|..+..+. .+..+++++|...+.+|..
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 9999999999876 478888999999999999999999 5555554332 2234789999999888884
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.3e-11 Score=104.09 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS 213 (403)
Q Consensus 134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 213 (403)
++++++++.++.+|..+ .++|++|++++|.++.+|..+..+++|+.|++++| .+. .++ ...+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~-~i~-~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RIS-TLS-NQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCC-CCC-TTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCC-EeC-HhHccCCCCCCEEECCCC
Confidence 46777777888887654 35788888888888888877888888888888887 233 222 234667777777777777
Q ss_pred CCCCccCccCCCCCCCCEEeecCC
Q 015671 214 KSLKSLPSEIFNLEFLTKLDLSGC 237 (403)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~ 237 (403)
.+....+..+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC
Confidence 755555555666667777766664
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=1.2e-11 Score=113.53 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=146.6
Q ss_pred CCCCcEEEEeccCCCCCCcccccccCCCC--CCCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCcccccccccc---
Q 015671 101 MPKLRFLKFYSSSFNGENKCKMSYLQDPG--FAEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKH--- 174 (403)
Q Consensus 101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~--~~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~--- 174 (403)
+++|+.|.++++-- ...+ ..+. .++|+.|+|++|.+..+.... ..+.+..+.+..+.+. ...+..
T Consensus 24 ~~~l~~L~l~g~i~------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKLN------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEEC------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEET
T ss_pred hCceeEEEEecccc------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhccccc
Confidence 45788888876421 0011 1111 267999999998877221111 1122344444444221 124445
Q ss_pred -----CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCC---CCCCCccc
Q 015671 175 -----YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS---KLKRLPEI 246 (403)
Q Consensus 175 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~ 246 (403)
+++|+.|++.+ .++ .++. ..+.+|++|+.+++.+|.....-+..+.++.++..+...... ....+...
T Consensus 95 ~~~~g~~~L~~l~L~~--~i~-~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE--KIK-NIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TEEEECTTCCC-CBCT--TCC-EECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccCCCcEEECCc--ccc-chhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 88888888876 343 4443 467788888888888876544444555555555555443310 01111111
Q ss_pred cc-----------------------------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccCCC
Q 015671 247 SS-----------------------------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLK 296 (403)
Q Consensus 247 ~~-----------------------------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 296 (403)
.. .++..+.+.+.-...-...+ ..+++|+.+++++|.+....+..|.+++
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 00 22333333322111101111 2378899999988775554445678888
Q ss_pred CCcEEeecCCCCCcccCcccCCCCCCC-EEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671 297 SLGVLNLYGCSNLQRLPECLGQLSSPI-TLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 297 ~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
+|+.+++.++ +....+.+|.++++|+ .+.+.+ .++.++ ..+..|++|+.+++++|. ++.++... ..+|++|+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~a--F~~~~~L~~ 325 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDEL--FGNGVPSKL 325 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTT--TCTTCCCCE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cCccchhh--hcCCcchhh
Confidence 9999999885 4444456688888898 898888 777664 567888899999987664 45555521 467888776
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.7e-12 Score=105.84 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC-CCCCCC
Q 015671 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI-FNLEFL 229 (403)
Q Consensus 151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 229 (403)
.+.+|++|++++|.+..++......++|++|++++| .+. .+..+..+++|++|++++|.+. .+|+.+ +.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~----~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIR----KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCC----EECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCC----cccccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 445555555655555555432222336666666665 222 2234555666666666666543 333322 556666
Q ss_pred CEEeecCCC
Q 015671 230 TKLDLSGCS 238 (403)
Q Consensus 230 ~~L~l~~~~ 238 (403)
+.|++++|.
T Consensus 91 ~~L~L~~N~ 99 (176)
T 1a9n_A 91 TELILTNNS 99 (176)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCc
Confidence 666666643
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=2.4e-11 Score=100.28 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=54.5
Q ss_pred EEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI 332 (403)
Q Consensus 253 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 332 (403)
.++++++.++.+|..+ .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4444445555555433 25555555555555544455555555666666665555544444455556666666666665
Q ss_pred cccCh-hhhcCCCCCEEeccCCcC
Q 015671 333 ERIPE-SIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 333 ~~l~~-~~~~~~~L~~L~l~~c~~ 355 (403)
+.++. .+..+++|+.|++++|+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55544 245555666666665543
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.5e-11 Score=100.47 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=59.8
Q ss_pred cEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCC
Q 015671 252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETN 331 (403)
Q Consensus 252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 331 (403)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+.++++|+.|+|++|.+.+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344555555555555442 566666666666555555556666666666666665554444445566666666666666
Q ss_pred CcccChh-hhcCCCCCEEeccCCcC
Q 015671 332 IERIPES-IIQHFVLRYLLLSYSER 355 (403)
Q Consensus 332 l~~l~~~-~~~~~~L~~L~l~~c~~ 355 (403)
++.+|.. +..+++|+.|++++|+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 6655543 55666666666666653
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1e-10 Score=97.07 Aligned_cols=110 Identities=24% Similarity=0.171 Sum_probs=75.7
Q ss_pred CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEeccc
Q 015671 203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSD 281 (403)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~ 281 (403)
++|++|++++|.+.+..+..++.+++|++|++++ |.++.++.. +..+++|+.|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ----------------------NQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC----------------------CcceEeChhHccCCCccCEEECCC
Confidence 4566666666654433333345555666666555 445555543 47788888888888
Q ss_pred CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88776555567788889999998887766555556788899999999988773
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.2e-13 Score=117.26 Aligned_cols=125 Identities=22% Similarity=0.117 Sum_probs=74.8
Q ss_pred cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcE
Q 015671 222 EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGV 300 (403)
Q Consensus 222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 300 (403)
.++.+++|+.|++++|.. ..+|.... ++|+.|++++|.++.+|..+..+++|+.|++++|.+.+ +| .+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCC-ccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 445555666666655432 22442111 55666666666666666666666777777777776544 34 4566677777
Q ss_pred EeecCCCCCcccC-cccCCCCCCCEEEccCCCCccc-Ch----------hhhcCCCCCEEe
Q 015671 301 LNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERI-PE----------SIIQHFVLRYLL 349 (403)
Q Consensus 301 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l-~~----------~~~~~~~L~~L~ 349 (403)
|++++|.+.+..+ ..+..+++|+.|++++|.+... |. .+..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777766554222 3566777777777777776533 21 256677777776
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=2.7e-09 Score=100.29 Aligned_cols=212 Identities=11% Similarity=0.058 Sum_probs=139.5
Q ss_pred CCeeEEEecCCCCCCCCCC-CCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671 131 AEVKYLHWHGYPLKSFPSN-LSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL 208 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 208 (403)
.+|+.+.+..+ ++.++.. |.-.+|+.+.+.. .+..++ ..+..+.+|+.+++.++ .+. .++. ..+. ..+|+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~-~I~~-~aF~-~~~L~~l 208 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KIT-KLPA-STFV-YAGIEEV 208 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCS-EECT-TTTT-TCCCSEE
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cce-Eech-hhEe-ecccCEE
Confidence 56777777553 6666433 3334677887775 556554 46777888888888765 333 4443 2333 4678888
Q ss_pred EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCC
Q 015671 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRL 285 (403)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~ 285 (403)
.+..+ +...-...+.++++|+.+++..+ +..++...+ .+|+.+.+. +.++.++ ..+..+++|+.+.+.++...
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 88753 22223355667788888888753 344443333 778888884 4456564 45678899999999876543
Q ss_pred -----CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcC
Q 015671 286 -----KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 286 -----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~ 355 (403)
..-+..|.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ ++.++ ..+..+ +|+.+.+.+|..
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 23334677899999999985 444444567888999999999654 66554 356777 999999998843
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=3.3e-10 Score=93.36 Aligned_cols=105 Identities=23% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671 229 LTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307 (403)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 307 (403)
.+.++++++ .++.+|.....+++.|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCC-CcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345555553 33445544446677777777777776 4567889999999999998776555567889999999999988
Q ss_pred CCcccCcccCCCCCCCEEEccCCCCcc
Q 015671 308 NLQRLPECLGQLSSPITLGLTETNIER 334 (403)
Q Consensus 308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~ 334 (403)
+.+..+..+..+++|+.|++++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 877666678899999999999998873
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.4e-10 Score=106.35 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=138.4
Q ss_pred CCeeEEEecCCC----CCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCC-----
Q 015671 131 AEVKYLHWHGYP----LKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPR----- 201 (403)
Q Consensus 131 ~~L~~L~l~~~~----~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----- 201 (403)
.+++.|.++|.- +..++. .+++|++|||++|.+..+....+.++.++.+....+ .++. ..+.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~--~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~-----~I~~-~aF~~~~~~~ 96 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRD--EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN-----FVPA-YAFSNVVNGV 96 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHH--SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT-----EECT-TTTEEEETTE
T ss_pred CceeEEEEeccccHHHHHHHHH--hhccCeEEecCcceeEEecCcccccccccccccccc-----ccCH-HHhccccccc
Confidence 668888887642 111111 167899999999888733222222333455555544 4443 45677
Q ss_pred ---CCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCcc----CcccC-hhhhC
Q 015671 202 ---LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTA----IKELP-SSIES 270 (403)
Q Consensus 202 ---l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~----~~~l~-~~~~~ 270 (403)
+++|+.+++.. .+...-+..|.++++|+.+++..|... .++...+ .++..+...... ...+. ..+..
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 89999999988 544333456889999999999986544 3333333 333333333211 01111 11122
Q ss_pred CCCCC--------------------------EEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671 271 LLRLE--------------------------YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324 (403)
Q Consensus 271 l~~L~--------------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 324 (403)
+..|+ .+.+.++-...........+++|+.+++++|.+....+.+|.++++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 23333 3322221100000000113789999999998776666678999999999
Q ss_pred EEccCCCCcccCh-hhhcCCCCC-EEeccCCcCCCcCCCCeEeccCCCCCCCch
Q 015671 325 LGLTETNIERIPE-SIIQHFVLR-YLLLSYSERLQSLPSPLFLARGCLAMQPFL 376 (403)
Q Consensus 325 L~l~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~ 376 (403)
+++.++ ++.++. .+..+++|+ .+++.+ .++.++... ..+|++|+.+.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~ 303 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVL 303 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEE
Confidence 999998 776654 578999999 999987 567777631 46788888744
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=4.2e-10 Score=93.03 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=77.0
Q ss_pred CEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN 308 (403)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 308 (403)
+.++++++ .++.+|.....+|+.|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 15 ~~l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 34555442 23444444445666666666777766 45678889999999999986664444567899999999999887
Q ss_pred CcccCcccCCCCCCCEEEccCCCCcccCh
Q 015671 309 LQRLPECLGQLSSPITLGLTETNIERIPE 337 (403)
Q Consensus 309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 337 (403)
.+..+..+..+++|+.|++++|.+...+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 76655568889999999999998885543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.2e-12 Score=111.00 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=60.8
Q ss_pred ccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCc
Q 015671 165 IEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP 244 (403)
Q Consensus 165 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 244 (403)
++.+|..+..+++|++|++++| .+. .+| .+.++++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~-~l~---~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~-------- 102 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIE-KIS---SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY-------- 102 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EES-CCC---CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEE--------
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCc-ccc---ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcC--------
Confidence 3344445555555555555555 222 222 3444455555555554432 3343333344555555554
Q ss_pred ccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCc---------
Q 015671 245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPE--------- 314 (403)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--------- 314 (403)
|.++.+| .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+.+|.
T Consensus 103 --------------N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 103 --------------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp --------------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred --------------CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 3333333 34444555555555554332111 2344555555555555544443332
Q ss_pred -ccCCCCCCCEEE
Q 015671 315 -CLGQLSSPITLG 326 (403)
Q Consensus 315 -~l~~l~~L~~L~ 326 (403)
.+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 144555666554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=8.3e-09 Score=96.93 Aligned_cols=236 Identities=9% Similarity=0.087 Sum_probs=149.5
Q ss_pred hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccccccc
Q 015671 95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQLWDC 171 (403)
Q Consensus 95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l~~~ 171 (403)
..+|..+ +|+.+.+..+ + ..+...... .+|+.+.+.. .++.++.. | .+.+|+.+++..+.++.++..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i-------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-L-------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-C-------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred HhhcccC-CccEEEeCCC-c-------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 4567664 6888877654 2 233333333 6688888865 66666533 3 678888888888888887754
Q ss_pred cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--
Q 015671 172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS-- 248 (403)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 248 (403)
.-.+.+|+.+.+..+ +. .++. ..+.++++|+.+.+..+ ...++ ..+.+ .+|+.+.+.. .+..++...+
T Consensus 199 aF~~~~L~~l~lp~~--l~-~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~ 269 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--LK-EIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYY 269 (401)
T ss_dssp TTTTCCCSEEECCTT--CC-EECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTT
T ss_pred hEeecccCEEEeCCc--hh-eehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhC
Confidence 444688888888753 33 4442 46778888888888763 33443 33444 6788888853 2344443333
Q ss_pred -CCCcEEEecCccCc-----ccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCC
Q 015671 249 -GNISWLFLTGTAIK-----ELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSS 321 (403)
Q Consensus 249 -~~L~~L~l~~~~~~-----~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 321 (403)
.+|+.+.+.++.+. .++ ..+..+++|+.+.+.. .+...-...|.++++|+.+.+..+ ....-..+|.++ +
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 78888888776554 344 4567788888888874 333333345677888888888653 333344567777 8
Q ss_pred CCEEEccCCCCcccCh-hhhcCC-CCCEEeccC
Q 015671 322 PITLGLTETNIERIPE-SIIQHF-VLRYLLLSY 352 (403)
Q Consensus 322 L~~L~l~~~~l~~l~~-~~~~~~-~L~~L~l~~ 352 (403)
|+.+.+.++.+..++. .+..++ .++.|.+..
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 8888888887765543 334442 455565544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1e-09 Score=101.29 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEeecCCCCCCCCccccc--CCCcEEEecC-ccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCC
Q 015671 231 KLDLSGCSKLKRLPEISS--GNISWLFLTG-TAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGC 306 (403)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~--~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 306 (403)
.++.++++.+..+|. +. .+|+.|+|++ |.++.++ ..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 356666435666776 43 6677777775 7777776 35677777777777777766666666777777777777777
Q ss_pred CCCcccCcccCCCCCCCEEEccCCCCc
Q 015671 307 SNLQRLPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 307 ~~~~~~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
.+.+..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 76654444444444 777777777766
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=4.4e-11 Score=111.35 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCCCCEEecccCcCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----ccCh
Q 015671 271 LLRLEYLDLSDCKRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----RIPE 337 (403)
Q Consensus 271 l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----~l~~ 337 (403)
.++|+.|++++|.+.. .++..+..+++|+.|+|++|.+... ++..+...++|+.|++++|.++ .+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4566666666665432 1223334556666666666654432 2344455566666666666665 2333
Q ss_pred hhhcCCCCCEEeccCCcC
Q 015671 338 SIIQHFVLRYLLLSYSER 355 (403)
Q Consensus 338 ~~~~~~~L~~L~l~~c~~ 355 (403)
.+...++|++|++++|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 234 AAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHCSSCCEEECTTSSC
T ss_pred HHHhCCCCCEEeccCCCC
Confidence 444556666666666653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=6.2e-11 Score=110.38 Aligned_cols=70 Identities=17% Similarity=0.060 Sum_probs=42.5
Q ss_pred cChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc
Q 015671 264 LPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 264 l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
++..+...++|++|++++|.+... ++..+...++|+.|+|++|.+... +...+...++|+.|++++|.++
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 334445666677777777664431 233445566777777777766542 3334445677777777777776
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=4e-08 Score=90.62 Aligned_cols=103 Identities=21% Similarity=0.114 Sum_probs=72.1
Q ss_pred EEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcc-ccc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccC
Q 015671 207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE-ISS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDC 282 (403)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 282 (403)
.++++++.....+|. +..+++|+.|++++++.++.++. .+. ++|+.|+|++|.++.+++ .+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666523556787 88888888888886344455543 333 888888888888887764 5688888888888888
Q ss_pred cCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671 283 KRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311 (403)
Q Consensus 283 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 311 (403)
.+.+..+..+..++ |+.|++.+|.+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 86654444444444 88888888876543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=9.8e-09 Score=94.82 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCCCcEEeecCCCCCcccCccc---CCCCCCCEEEccCCCCcc-----cChhhhcCCCCCEEeccCCc
Q 015671 294 KLKSLGVLNLYGCSNLQRLPECL---GQLSSPITLGLTETNIER-----IPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 294 ~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~c~ 354 (403)
.+++|+.|++.+|.+....+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35677777777666543322122 245677777777777662 33344556777777777764
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=4.5e-06 Score=78.24 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=132.8
Q ss_pred eecChhhhcCCCCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCC---
Q 015671 91 FRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPEN--- 163 (403)
Q Consensus 91 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~--- 163 (403)
..+...+|.++.+|+.+.+..+ + ..+.. .+.. .+|+.+++..+ ++.++... .+..|+.+.+..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i-------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~ 130 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-V-------REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS 130 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-C-------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred eEhHHHHhhCCCCceEEEeCCC-c-------cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee
Confidence 3456677888888888887542 2 23332 2333 77888877542 44443322 3455554444322
Q ss_pred ------------------Ccccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC
Q 015671 164 ------------------DIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF 224 (403)
Q Consensus 164 ------------------~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 224 (403)
.+..+ ...+..+.+|+.+.+.++. . .++ ...+.++.+|+.+.+..+ ....-...+.
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~--~-~I~-~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM--E-TLH-NGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC--C-EEC-TTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred ecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc--c-eec-cccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 01111 1345566777777775531 1 222 235566666676666543 1111123344
Q ss_pred CCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCC----------------
Q 015671 225 NLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRL---------------- 285 (403)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~---------------- 285 (403)
++..|+.+.+..+.. .+..... .+|+.+.+... ++.+. ..+..+..++.+.+..+...
T Consensus 206 ~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 206 ECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred cccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence 555555554433211 0111111 44444444321 11111 12233344444443322100
Q ss_pred ---CcCC-ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCC
Q 015671 286 ---KSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLP 360 (403)
Q Consensus 286 ---~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp 360 (403)
..++ ..+..+.+|+.+.+..+ ....-..+|.++++|+.+.+..+ ++.+. ..+..|++|+.+.+..+ ++.++
T Consensus 283 ~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~ 358 (394)
T 4fs7_A 283 YGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIG 358 (394)
T ss_dssp ECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC
T ss_pred cCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEeh
Confidence 0011 23456777888877653 32223456778888888888643 66554 35678888998888755 56666
Q ss_pred CCeEeccCCCCCCC
Q 015671 361 SPLFLARGCLAMQP 374 (403)
Q Consensus 361 ~~~l~i~~c~~l~~ 374 (403)
... ..+|.+|+.
T Consensus 359 ~~a--F~~C~~L~~ 370 (394)
T 4fs7_A 359 ANA--FQGCINLKK 370 (394)
T ss_dssp TTT--BTTCTTCCE
T ss_pred HHH--hhCCCCCCE
Confidence 632 478888887
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=2.2e-08 Score=92.49 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=95.4
Q ss_pred cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC--CCCCCCEEeecCCCC-CCCCc
Q 015671 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSK-LKRLP 244 (403)
Q Consensus 168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~-~~~~~ 244 (403)
+...+..+++|+.|.++++..+ .++ .+ .+++|++|++..|.+.......++ .+++|+.|+++.+.. ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l--~l~---~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~-- 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL--SIG---KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF-- 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC--BCC---SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--
T ss_pred HHHHHhcCCCCcEEEEeCCCCc--eec---cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--
Confidence 4455667788888888876322 222 22 267888888887664433222232 678888888753211 000
Q ss_pred ccccCCCcEEEecCccCcccChhh--hCCCCCCEEecccCcCCCcCCccc---cCCCCCcEEeecCCCCCcc----cCcc
Q 015671 245 EISSGNISWLFLTGTAIKELPSSI--ESLLRLEYLDLSDCKRLKSLPSSL---CKLKSLGVLNLYGCSNLQR----LPEC 315 (403)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~ 315 (403)
+..+..+...+ ..+++|+.|++.+|.+....+..+ ..+++|+.|+|+.|.+.+. ++..
T Consensus 236 -------------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 236 -------------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp -------------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred -------------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 00111111112 356788888888877553222211 2478899999988776553 3334
Q ss_pred cCCCCCCCEEEccCCCCc-ccChhhhc-CCCCCEEeccCCc
Q 015671 316 LGQLSSPITLGLTETNIE-RIPESIIQ-HFVLRYLLLSYSE 354 (403)
Q Consensus 316 l~~l~~L~~L~l~~~~l~-~l~~~~~~-~~~L~~L~l~~c~ 354 (403)
+..+++|+.|++++|.++ .....+.. + ...+++++++
T Consensus 303 L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 456788999999988877 22222322 2 4567887765
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=1e-05 Score=75.72 Aligned_cols=223 Identities=11% Similarity=0.078 Sum_probs=136.7
Q ss_pred CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671 131 AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI 207 (403)
Q Consensus 131 ~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 207 (403)
.+|+.+.+..+ +..++.. + .+.+|+.+++..+ ++.++ ..+.++..|+.+.+..+.. .+.. ......+|+.
T Consensus 162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~---~i~~--~~~~~~~l~~ 234 (394)
T 4fs7_A 162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY---YLGD--FALSKTGVKN 234 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC---EECT--TTTTTCCCCE
T ss_pred CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce---Eeeh--hhcccCCCce
Confidence 77888888643 4445433 3 5778888888665 44443 4667788888887766422 2221 2334467788
Q ss_pred EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284 (403)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 284 (403)
+.+... ....-...+.++.+|+.+.+..+. ..+..... ..++.+.+....+. ...+..+.+|+.+.+..+
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-- 307 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-- 307 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--
T ss_pred EEECCC-ceecccccccccccceeEEcCCCc--ceeeccccccccccceeccCceeec--cccccccccccccccccc--
Confidence 877652 222223445677888888886532 12222221 56666665543322 124567788888888754
Q ss_pred CCcC-CccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671 285 LKSL-PSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSP 362 (403)
Q Consensus 285 ~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~ 362 (403)
...+ ...|.++.+|+.+.+.. .....-..+|.++++|+.+.+..+ ++.+. ..+..|++|+.+++..+ ++.+..
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~- 382 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRY- 382 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGG-
T ss_pred cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhh-
Confidence 2333 34577888999999875 333333457888999999998766 66554 35788899999988754 233321
Q ss_pred eEeccCCCCCCC
Q 015671 363 LFLARGCLAMQP 374 (403)
Q Consensus 363 ~l~i~~c~~l~~ 374 (403)
...+|.+|+.
T Consensus 383 --~F~~c~~L~~ 392 (394)
T 4fs7_A 383 --DFEDTTKFKW 392 (394)
T ss_dssp --GBCTTCEEEE
T ss_pred --eecCCCCCcE
Confidence 3567777664
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.32 E-value=0.00026 Score=65.69 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=36.9
Q ss_pred ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCC
Q 015671 92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPEN 163 (403)
Q Consensus 92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~ 163 (403)
.+...+|.++.+|+.+.+..+ + ..+...... ..|..+.+.. .++.++... ...+|+.+.+..+
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v-------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-V-------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-C-------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-c-------eEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc
Confidence 455678899999999988653 2 233333333 5566666543 345554332 3446777777654
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=9.2e-05 Score=69.23 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=43.9
Q ss_pred hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCC
Q 015671 268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLR 346 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~ 346 (403)
+..+..|+.+.+..+. ...-...+.+++.|+.+.+.. ........+|.++.+|+.+.+..+ ++.+. ..+..|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3445556666554321 111122344555555555542 222222234555555555555432 33332 2344555555
Q ss_pred EEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671 347 YLLLSYSERLQSLPSPLFLARGCLAMQP 374 (403)
Q Consensus 347 ~L~l~~c~~l~~lp~~~l~i~~c~~l~~ 374 (403)
.+.|..+ ++.++.. ...+|.+|+.
T Consensus 338 ~i~ip~s--v~~I~~~--aF~~C~~L~~ 361 (394)
T 4gt6_A 338 RIAIPSS--VTKIPES--AFSNCTALNN 361 (394)
T ss_dssp EEEECTT--CCBCCGG--GGTTCTTCCE
T ss_pred EEEECcc--cCEEhHh--HhhCCCCCCE
Confidence 5555432 3333331 1245555554
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=4.8e-07 Score=75.28 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=74.2
Q ss_pred CCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCC
Q 015671 223 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSL 298 (403)
Q Consensus 223 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L 298 (403)
+...++|++|++++|..++. .....+...+...+.|++|++++|.+... +...+...++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred HhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 44566677777766522211 11123444556667788888888775432 23334455778
Q ss_pred cEEeecCCCCCcc----cCcccCCCCCCCEEEc--cCCCCc-----ccChhhhcCCCCCEEeccCCc
Q 015671 299 GVLNLYGCSNLQR----LPECLGQLSSPITLGL--TETNIE-----RIPESIIQHFVLRYLLLSYSE 354 (403)
Q Consensus 299 ~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~~~l~-----~l~~~~~~~~~L~~L~l~~c~ 354 (403)
+.|+|++|.+... +...+...++|+.|++ ++|.+. .+...+...++|++|++++|.
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8888888776543 4456667778888888 778887 245556677888888888875
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.23 E-value=0.00026 Score=66.09 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671 249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL 327 (403)
Q Consensus 249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 327 (403)
..|+.+.+..+..+--...+..++.|+.+.+.. . ...++ ..|.++.+|+.+.+..+ ....-..+|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 445555554332221123456788899998864 3 33333 45778899999999763 33333457889999999999
Q ss_pred cCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCc
Q 015671 328 TETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPF 375 (403)
Q Consensus 328 ~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~ 375 (403)
..+ ++.+. ..+..|++|+.+++.++.... -....|..|+.+
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i 383 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNL 383 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH------HTCBCCCCC---
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh------hhhhccCCCCEE
Confidence 654 66664 357889999999998764221 123567777763
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=7.8e-07 Score=72.47 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc-ccCcccCCC----CCCCEEEccCC-CCc--ccChhhhcCC
Q 015671 272 LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQL----SSPITLGLTET-NIE--RIPESIIQHF 343 (403)
Q Consensus 272 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l----~~L~~L~l~~~-~l~--~l~~~~~~~~ 343 (403)
..|+.|++++|.++..-...+..+++|+.|+|++|..++ .....+..+ ++|++|++++| .++ .+. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 356777777766444333345567777777777775333 222233332 35777777777 366 332 355677
Q ss_pred CCCEEeccCCcCC
Q 015671 344 VLRYLLLSYSERL 356 (403)
Q Consensus 344 ~L~~L~l~~c~~l 356 (403)
+|++|++++|+.+
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 7777777777544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=9.7e-07 Score=73.43 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=62.5
Q ss_pred CCCCCcEEEecCC-CCCCc----cCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCC
Q 015671 201 RLNKVVILNLRGS-KSLKS----LPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLE 275 (403)
Q Consensus 201 ~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 275 (403)
..+.|++|++++| .+... +...+...++|++|++++|.... .....+...+...+.|+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----------------~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----------------PVAFALAEMLKVNNTLK 96 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----------------HHHHHHHHHHHHCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----------------HHHHHHHHHHHhCCCcC
Confidence 3455666666665 43221 23334455667777776654211 11112333444555666
Q ss_pred EEecccCcCCCc----CCccccCCCCCcEEee--cCCCCCcc----cCcccCCCCCCCEEEccCCCCc
Q 015671 276 YLDLSDCKRLKS----LPSSLCKLKSLGVLNL--YGCSNLQR----LPECLGQLSSPITLGLTETNIE 333 (403)
Q Consensus 276 ~L~l~~~~~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~ 333 (403)
+|++++|.+... +...+...++|+.|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 666666664432 2334455667777777 66665443 3344555677888888877765
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.1e-06 Score=69.96 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCC----CCCcEEEecCCCCCCc-cCccCCCC
Q 015671 153 EKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL----NKVVILNLRGSKSLKS-LPSEIFNL 226 (403)
Q Consensus 153 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~-~~~~~~~l 226 (403)
.+|++||++++.++.. ...+..+++|++|++++|..++ .- .+..+..+ ++|++|++++|..+.+ --..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4566666666665532 2345678888888888886443 11 11223332 3688888888764432 22335678
Q ss_pred CCCCEEeecCCCCCCC
Q 015671 227 EFLTKLDLSGCSKLKR 242 (403)
Q Consensus 227 ~~L~~L~l~~~~~~~~ 242 (403)
++|+.|++++|..++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 8888888888876654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.6e-05 Score=69.73 Aligned_cols=80 Identities=21% Similarity=0.130 Sum_probs=49.3
Q ss_pred hCCCCCCEEecccCcCCC--cCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCc-ccC-------h
Q 015671 269 ESLLRLEYLDLSDCKRLK--SLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIE-RIP-------E 337 (403)
Q Consensus 269 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~-~l~-------~ 337 (403)
..+++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.+.+. -...+..+ +|++|++++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456777777777777655 3445555677777777777666543 11223333 6777777777776 343 2
Q ss_pred hhhcCCCCCEEe
Q 015671 338 SIIQHFVLRYLL 349 (403)
Q Consensus 338 ~~~~~~~L~~L~ 349 (403)
.+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777776
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=6.5e-05 Score=65.77 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=64.5
Q ss_pred cCCCCCcEEeecCCCCCc--ccCcccCCCCCCCEEEccCCCCcccChhhhcCC--CCCEEeccCCcCCCcCCCC----eE
Q 015671 293 CKLKSLGVLNLYGCSNLQ--RLPECLGQLSSPITLGLTETNIERIPESIIQHF--VLRYLLLSYSERLQSLPSP----LF 364 (403)
Q Consensus 293 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~~c~~l~~lp~~----~l 364 (403)
.++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.++.+. .+..+. +|+.|++++|+..+.+|.. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 468899999999999877 56667778999999999999999763 344444 9999999999988888752 22
Q ss_pred eccCCCCCCCc
Q 015671 365 LARGCLAMQPF 375 (403)
Q Consensus 365 ~i~~c~~l~~~ 375 (403)
.+..+|+|+.+
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 34567777764
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.53 E-value=0.015 Score=53.55 Aligned_cols=242 Identities=8% Similarity=0.046 Sum_probs=120.1
Q ss_pred cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-CCCCCceEEEccCCCcccc-c
Q 015671 93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-LSAEKLVLFEVPENDIEQL-W 169 (403)
Q Consensus 93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~l-~ 169 (403)
+...+|..+ +|+.+.+-.+- ..+...... .+|+.+.+.+. +..+... +....|..+.+..+ ++.+ .
T Consensus 83 Ig~~aF~~c-~l~~i~~~~~l--------~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~ 151 (379)
T 4h09_A 83 IGDGAFADT-KLQSYTGMERV--------KKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKD 151 (379)
T ss_dssp ECTTTTTTC-CCCEEEECTTC--------CEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECS
T ss_pred echhhhcCC-CCceEECCcee--------eEeccceeccCCcccccCCCc-cccccccccccceeeeeeccce-eecccc
Confidence 445677776 57777664421 233333333 67888887653 3333322 23335555555433 2222 2
Q ss_pred cccccCCCCcEeecccccCcccc---------CCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCC
Q 015671 170 DCVKHYSKLNQIIHAVCHRLIAK---------TPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL 240 (403)
Q Consensus 170 ~~~~~l~~L~~L~l~~~~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (403)
..+..+.+++.+.+......... ......+.....+..+.+... ........+..+.+|+.+.+..+ +
T Consensus 152 ~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~ 228 (379)
T 4h09_A 152 GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--V 228 (379)
T ss_dssp CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--C
T ss_pred chhcccccccccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--e
Confidence 34455666666655433211000 000012223344444444331 11122233445566666666432 2
Q ss_pred CCCccccc---CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCcc
Q 015671 241 KRLPEISS---GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPEC 315 (403)
Q Consensus 241 ~~~~~~~~---~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 315 (403)
..+..... ..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ...++ ..+..+++|+.+.+.++.+...-..+
T Consensus 229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhh
Confidence 22222111 55666666543 33343 23456677777777543 22222 34566777888877765444444456
Q ss_pred cCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccC
Q 015671 316 LGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSY 352 (403)
Q Consensus 316 l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~ 352 (403)
|.++.+|+.+.+..+ ++.+.. .+..|++|+.+.+..
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777788888877543 554443 456677777777653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00076 Score=55.84 Aligned_cols=90 Identities=16% Similarity=0.052 Sum_probs=54.7
Q ss_pred cChhhhCCCCCCEEecccCcCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCC---CC
Q 015671 264 LPSSIESLLRLEYLDLSDCKRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTET---NI 332 (403)
Q Consensus 264 l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~---~l 332 (403)
+...+..-+.|+.|++++|.+.. .+...+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|+++ .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 34445556677777777776542 2222344456777888877776543 3345666667888888754 33
Q ss_pred c-----ccChhhhcCCCCCEEeccCC
Q 015671 333 E-----RIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 333 ~-----~l~~~~~~~~~L~~L~l~~c 353 (403)
. .+...+..-+.|+.|+++.|
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3 23444566677888877655
No 162
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.51 E-value=0.00047 Score=67.36 Aligned_cols=38 Identities=8% Similarity=0.260 Sum_probs=33.1
Q ss_pred cchHhhhcCccEEEcc---CCeEEccHHHHHHHHHHHhhhc
Q 015671 13 IGISVLVDKSLIVVGS---YNKIRMHDLLQELGREIVRQES 50 (403)
Q Consensus 13 ~~~~~Lv~~sl~~~~~---~~~~~mHdll~dla~~~~~~e~ 50 (403)
.||++|++|||++... ..+|+|||+|||+|++++.+++
T Consensus 432 ~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 4899999999999764 2479999999999999888775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.40 E-value=0.0097 Score=49.20 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred hhCCCCCCEEecccC-cCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----
Q 015671 268 IESLLRLEYLDLSDC-KRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE----- 333 (403)
Q Consensus 268 ~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~----- 333 (403)
+..-+.|+.|+++++ .+.. .+...+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999875 4322 2334456678999999999987643 4445566789999999999998
Q ss_pred ccChhhhcCCCCCEEeccCC
Q 015671 334 RIPESIIQHFVLRYLLLSYS 353 (403)
Q Consensus 334 ~l~~~~~~~~~L~~L~l~~c 353 (403)
.+-..+..-+.|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 34455666678999999875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.65 E-value=0.054 Score=41.49 Aligned_cols=6 Identities=67% Similarity=0.717 Sum_probs=2.1
Q ss_pred EEEecC
Q 015671 253 WLFLTG 258 (403)
Q Consensus 253 ~L~l~~ 258 (403)
.|+|++
T Consensus 35 ~L~Ls~ 40 (130)
T 3rfe_A 35 ELVLTG 40 (130)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 333333
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.56 E-value=0.0086 Score=64.32 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=37.8
Q ss_pred ccccCCCcccchHhhhcCccEEEccCC---eEEccHHHHHHHHHHHhhh
Q 015671 4 HNASGFYPEIGISVLVDKSLIVVGSYN---KIRMHDLLQELGREIVRQE 49 (403)
Q Consensus 4 ~~~~~~~~~~~~~~Lv~~sl~~~~~~~---~~~mHdll~dla~~~~~~e 49 (403)
|.+.+..++.++++|+++||++...++ +|+|||++|++|++.+.++
T Consensus 404 ~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 404 WDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred hCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 444456778899999999999987655 4999999999999887665
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.081 Score=40.48 Aligned_cols=55 Identities=16% Similarity=0.070 Sum_probs=34.8
Q ss_pred EEEecCccCc--ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671 253 WLFLTGTAIK--ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309 (403)
Q Consensus 253 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 309 (403)
.++.+++.++ .+|..+ .++|+.|+|++|.+...-+..+..+++|+.|+|.+|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444455555 666432 246788888887765544445667778888888877654
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.01 E-value=0.16 Score=49.76 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCcccchHhhhcCccEEEccC---CeEEccHHHHHHHHHH
Q 015671 9 FYPEIGISVLVDKSLIVVGSY---NKIRMHDLLQELGREI 45 (403)
Q Consensus 9 ~~~~~~~~~Lv~~sl~~~~~~---~~~~mHdll~dla~~~ 45 (403)
..++.++++|+++||++...+ ..|+|||++|+++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 356779999999999986542 3799999999999876
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.87 E-value=0.14 Score=53.04 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=29.1
Q ss_pred CcccchHhhhcCccEEEcc-CCeEEccHHHHHHHH
Q 015671 10 YPEIGISVLVDKSLIVVGS-YNKIRMHDLLQELGR 43 (403)
Q Consensus 10 ~~~~~~~~Lv~~sl~~~~~-~~~~~mHdll~dla~ 43 (403)
.++.++++|+++||++... .++|+||||++|++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 4778999999999999863 568999999998763
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.63 E-value=50 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=17.5
Q ss_pred CCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecC
Q 015671 198 LMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG 236 (403)
Q Consensus 198 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (403)
.|.++++|+.+.+.. .+...-...|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 444555555555544 11222223344555555555543
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.01 E-value=71 Score=22.49 Aligned_cols=37 Identities=8% Similarity=-0.092 Sum_probs=15.6
Q ss_pred ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671 292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE 329 (403)
Q Consensus 292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 329 (403)
|.++.+|+.+.|.. .....-..+|.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 44445555555443 12222223344455555554443
Done!