BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015673
         (403 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
           From Legionella Pneumophila. Northeast Structural
           Genomics Consortium Target Lgr21.
 pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
           From Legionella Pneumophila. Northeast Structural
           Genomics Consortium Target Lgr21
          Length = 376

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246
           L CLY       A++LWS+  KKG+  +V  +   IT
Sbjct: 66  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT 102


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 99  YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEI 158
           Y+C+L  +  ++       R FD   ++   + V +          +   D   + FD +
Sbjct: 69  YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128

Query: 159 P--KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194
              K + + P   SYG  L   C  G +DKA E+   M
Sbjct: 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166



 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 45/167 (26%)

Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI------------------------ 245
           L+   K+G+  EA RL+ E  + GV L    YNV +                        
Sbjct: 33  LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92

Query: 246 --------------TNTYGG-------DPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284
                         T T G        DPE   +++ +M+  G++P   SY   +  +C+
Sbjct: 93  FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152

Query: 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331
               D+A +V   + E+   P        +     + N DK YK  +
Sbjct: 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,919,340
Number of Sequences: 62578
Number of extensions: 422650
Number of successful extensions: 1124
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 17
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)