BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015673
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 318/391 (81%), Gaps = 6/391 (1%)
Query: 3 SLRHIRRLCTATTAAGSSTTASS---ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
SLR +RR +A AA +TTA S ISVSKAKS LR E DPDKAL IY++VS H ASPV
Sbjct: 7 SLRLVRRFASA--AADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPV 64
Query: 60 SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
SSRYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+ LIRSYGQA MF+HAMRT
Sbjct: 65 SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRT 124
Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSH 178
F+QMD+ GTPRS +SFNALL AC S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+
Sbjct: 125 FEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSY 184
Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
CDSG+ +KA+E++ +M+ KG+EVTT+ +TT+L+ LYK+G E A+ LW+EM KKG +LD
Sbjct: 185 CDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 244
Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
AAYNVRI + PER+KELI+EM GLKPDTISYN+LMT YC+ M+DEAKKVYEGL
Sbjct: 245 AAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGL 304
Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
E N C+PNA TFRT I+HLC S +++ Y +FK+SV +HKIPDFNT+K LV GLV+ KK
Sbjct: 305 EGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKR 364
Query: 359 KEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
+AKG+IRT+KKKFPP+ L AWKK+EEELGL
Sbjct: 365 DDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/405 (59%), Positives = 303/405 (74%), Gaps = 11/405 (2%)
Query: 4 LRHIRRLCTATTAAGSSTTA--SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS 61
LR +RR TAT S TTA +I++SKAKSKLR DPDKAL IY SVS + SP+SS
Sbjct: 8 LRFLRRFSTAT-GIDSQTTAYPGAITMSKAKSKLRKVQDPDKALAIYKSVSNNSTSPLSS 66
Query: 62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFD 121
RYA +LTV+RLAKS+RFSDIE LIESHKN+PKI E +L LIRSYG+A MFDHAM+ F+
Sbjct: 67 RYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFE 126
Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY-NLSPDKISYGLLLKSHCD 180
+MD+LGTPR+V+SFNALL AC S L+++VP LFDE P++Y N++PDKISYG+L+KS+CD
Sbjct: 127 EMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCD 186
Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
SG +KA+E++ +ME KGVEVT + +TT+L LYK G +EAE LW EM KG DLD
Sbjct: 187 SGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTV 246
Query: 241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
YNVR+ N PER+KEL++EM GLKPDT+SYN+LMT YC MM EAKKVYEGLE+
Sbjct: 247 YNVRLMNAAKESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLEQ 306
Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
PNA TFRT I+HLC +G +D+ VFK+S +VHKIPDF T K L EGLVK ++++
Sbjct: 307 ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMED 362
Query: 361 AKGVIRTIKKKFPPNVLRAWKKVEEELGLVP---APAVGDGQKAR 402
A+GV R +KKKFPP ++ WKK+EE+LGL A AV + R
Sbjct: 363 ARGVARIVKKKFPPRLVTEWKKLEEKLGLYSKGNAAAVSSSSQTR 407
>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870,
mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2
SV=2
Length = 408
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 224/387 (57%), Gaps = 7/387 (1%)
Query: 6 HIRRLCTATT--AAGSSTTASSISVSKAK-SKLRSEFDPDKALDIYSSVSKHYASPVSSR 62
IR L +A+T + S T +S SKA S L+SE DPD+ L+I + S + R
Sbjct: 22 QIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRI-DR 80
Query: 63 YAQDLTVRRLAKSKRFSDIETLIESH-KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFD 121
A V LA+ K FS + L++ +N P + E + + I Y QA M DH++R F
Sbjct: 81 IAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFR 140
Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181
+++ R+V S NALLFAC ++ Y + ++ E+PK Y + PD +Y ++K C+S
Sbjct: 141 DLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCES 200
Query: 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241
GS+ + ++ EME KG++ + ++ +++ Y + ++E ++ + M+ +GV++ V+ Y
Sbjct: 201 GSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGVNIGVSTY 260
Query: 242 NVRITNTYGGDPER-LKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
N+RI + + K L+D M AG+KP+T++Y+ L+ +C + +EAKK+++ +
Sbjct: 261 NIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVN 320
Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
GC P++ + T IY+LC G+F+ A + KES+ + +P F+ +K LV GL K K++E
Sbjct: 321 RGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEE 380
Query: 361 AKGVIRTIKKKFPPNVLRAWKKVEEEL 387
AK +I +K+KF NV W +VE L
Sbjct: 381 AKELIGQVKEKFTRNV-ELWNEVEAAL 406
>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150,
mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2
SV=2
Length = 397
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 208/388 (53%), Gaps = 18/388 (4%)
Query: 1 MTSLRHIRRLC-----TATTAAGSSTTASSISVSK-----AKSKLRSEFDPDKALDIYSS 50
M SLRHIRR C AT A ST ++ I K A KL+SE DP+K +++ +
Sbjct: 1 MLSLRHIRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKA 60
Query: 51 VSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110
+ + + +R+A + TV RLA + R IE L+E K P+ +E ++ +I YG+A
Sbjct: 61 NATNRLV-IENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKA 119
Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
GM A+ TF MD G RSV SFNA L + + + + P KY + D +S
Sbjct: 120 GMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVS 179
Query: 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
+ + +KS C+ G D A + EME G+ VTYTT+++ LYK LW+ M
Sbjct: 180 FNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMV 239
Query: 231 KKGVDLDVAAYNVRI----TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE 286
KG ++ +NVRI D L L+ +++ ++PD+I+YN ++ +
Sbjct: 240 LKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQ---VEPDSITYNMVIKGFFLAR 296
Query: 287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346
D A++VY + G PN ++T I++LC +GNFD AY + K+ + P+ +TV+
Sbjct: 297 FPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVE 356
Query: 347 LLVEGLVKKKKIKEAKGVIRTIKKKFPP 374
+L++GLVKK ++ +AK ++ + ++ PP
Sbjct: 357 MLLKGLVKKGQLDQAKSIMELVHRRVPP 384
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 213/372 (57%), Gaps = 15/372 (4%)
Query: 7 IRRLCTATTAAGSSTTASSISVSKAKSKLRS----EFDPDKALDIYSSV--SKHYASPVS 60
IRR +A T S TA + ++S + L S E +P + ++ + S+ + + ++
Sbjct: 17 IRRFSSAATVV-SEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIA 75
Query: 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF 120
D TVRRL +KR +E ++E K +++E + +I YG+AGMF++A + F
Sbjct: 76 ---VYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVF 132
Query: 121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180
++M RSV+SFNALL A S+ +D V LF+E+P K ++ PD +SY L+K+ C+
Sbjct: 133 EEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCE 192
Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
S +A+ LL+E+ENKG++ VT+ T+L Y +G E E +W++M +K V +D+
Sbjct: 193 KDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRT 252
Query: 241 YNVRITNTYGGDPERLKELID---EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297
YN R+ + + KEL++ E++ +GLKPD S+N ++ MDEA+ Y+
Sbjct: 253 YNARLLGL--ANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKE 310
Query: 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357
+ ++G P+ TF + +C +G+F+ A ++FKE+ + T++ LV+ LVK K
Sbjct: 311 IVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSK 370
Query: 358 IKEAKGVIRTIK 369
+EA+ +++ K
Sbjct: 371 REEAEEIVKIAK 382
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 175/303 (57%), Gaps = 1/303 (0%)
Query: 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127
TVRRLA +K+F +E ++E P +++E ++ +I YG+ GMF++A + FD+M E
Sbjct: 77 TVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERN 136
Query: 128 TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187
R+ +SFNALL AC S+ +D V +F E+P K ++ PD SY L+K C GS +A
Sbjct: 137 CKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEA 196
Query: 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247
+ L++E+ENKG++ +T+ +L+ Y +G EE E++W+ M +K V D+ +YN R+
Sbjct: 197 VALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLG 256
Query: 248 -TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
E + L D+++ LKPD ++ ++ + +DEA Y+ +E+NGC P
Sbjct: 257 LAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPL 316
Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
F + + +C +G+ + AY++ KE + D ++ +V+ LVK K EA+ ++
Sbjct: 317 KFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVE 376
Query: 367 TIK 369
K
Sbjct: 377 LAK 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)
Query: 156 DEIPKKYNLSPDKISYGL---LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC 212
+EI ++ N P+ G ++ + G + A ++ +EM + + T +++ +LN
Sbjct: 91 EEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNA 150
Query: 213 LYKQGNAEEAERLWSEMEKK-GVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKP 270
+ E ++ E+ K ++ DVA+YN I G G LIDE+ + GLKP
Sbjct: 151 CVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKP 210
Query: 271 DTISYNFLM-TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329
D I++N L+ Y K + +E ++++ + E + ++ + L ++ +
Sbjct: 211 DHITFNILLHESYTKGK-FEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSL 269
Query: 330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
F + PD T +++G V + K+ EA + I+K
Sbjct: 270 FDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK 310
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 191 bits (485), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 209/382 (54%), Gaps = 9/382 (2%)
Query: 15 TAAGSSTTASSISVSKAKSK-----LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTV 69
+++ S T S++ + KS+ L+SE +PD+ L+I S S V R + V
Sbjct: 24 SSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVD-RIIFSVAV 82
Query: 70 RRLAKSKRFSDIETLIESH-KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
LA+ K F + L++ +N P E + I YG+A M D +++TF +++
Sbjct: 83 VTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEI 142
Query: 129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
PR+V S NALLFAC ++ Y + ++ E+PK Y + PD +Y +++ C+SGS+ +
Sbjct: 143 PRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSY 202
Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248
++ EME K ++ T ++ +++ YK+ +E ++ M++ GV + VA YN+ I
Sbjct: 203 SIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCL 262
Query: 249 YG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
K LID + ++P++++Y+ L+ +C E +DEA ++E + NG P++
Sbjct: 263 CKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDS 322
Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
+ T I+ LC G+F+ A + +ES+ + +P F+ +K LV GL + K+ EAK +I
Sbjct: 323 ECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAV 382
Query: 368 IKKKFPPNVLRAWKKVEEELGL 389
+K+KF NV W +VE L L
Sbjct: 383 VKEKFTRNV-DLWNEVEAALPL 403
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 166/302 (54%), Gaps = 1/302 (0%)
Query: 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
+RRL ++K+FS I+ +++ K I E ++ ++ YG +GM +HA + FD+M EL
Sbjct: 94 IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153
Query: 129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
R+V SFNALL A S+ D+ F E+P+K ++PD ++Y ++K+ C GS D L
Sbjct: 154 ERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDIL 213
Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN- 247
+ E+E G E +++ T+L Y++ E +R+W M+ K + ++ +YN R+
Sbjct: 214 SIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273
Query: 248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
T LID M+ G+ PD +YN L+T Y + ++E K Y ++E G +P+
Sbjct: 274 TRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDT 333
Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
T+ I LC G+ D+A +V +E++ + N K +VE L+ KI EA +++
Sbjct: 334 VTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKN 393
Query: 368 IK 369
K
Sbjct: 394 GK 395
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 41/347 (11%)
Query: 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122
Y + + K + FS +E +++ K D + + L+ + G A + FD+
Sbjct: 260 YTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319
Query: 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182
M E G V + +L+ R + +LFDE+ +K LSP +YG L+ C G
Sbjct: 320 MRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEK-GLSPSSYTYGALIDGVCKVG 378
Query: 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN 242
A L+NEM++KGV +T V + T+++ ++G +EA ++ ME+KG DV N
Sbjct: 379 EMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCN 438
Query: 243 -------------------------------VRITNTYG-----GDPERLKELIDEMRDA 266
V TN G+ E K L EM
Sbjct: 439 TIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK 498
Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
G++P+ I+YN ++ YCK + EA+K+ +E NG P++ T+ + I+ C + N D+A
Sbjct: 499 GVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEA 558
Query: 327 YKVFKESVMVHKIPDFNTV--KLLVEGLVKKKKIKEAKGVIRTIKKK 371
++F E M K D N+V +++ GL K K EA G+ +K+K
Sbjct: 559 MRLFSE--MGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRK 603
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 8/275 (2%)
Query: 43 KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLI-ESHKNDPKITQEPYLC 101
+A ++ +++ SP S Y + + K E L+ E ITQ +
Sbjct: 347 RAFLLFDELTEKGLSP--SSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF-N 403
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKV-PILFDEIPK 160
LI Y + GM D A +D M++ G V + N + R + YD+ LF +
Sbjct: 404 TLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 463
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
LS +SY L+ +C G+ ++A L EM +KGV+ +TY ++ KQG +
Sbjct: 464 GVKLST--VSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLM 279
EA +L + ME G+D D Y I D + L EM GL ++++Y ++
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMI 581
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314
+ K DEA +Y+ ++ G + + + I
Sbjct: 582 SGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 67/328 (20%)
Query: 71 RLAKSKRFSDIETLIESHKND-------PKITQEPYLCNL---------------IRSYG 108
RL ++RF+++ +L+ S ND ++ C++ R Y
Sbjct: 106 RLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYV 165
Query: 109 QAGMFDHAMRTFDQMDELGTP---RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS 165
GMF+ +R FD M + G RS I F L+ A R R+
Sbjct: 166 DNGMFEEGLRVFDYMVKKGLSIDERSCIVF--LVAAKKRRRI------------------ 205
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225
D LE+ M + GV++T + T V+ L ++G E++++L
Sbjct: 206 -------------------DLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKL 246
Query: 226 WSEMEKKGVDLDVAAYNVRITNTY--GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYC 283
E KG+ + YN I N Y D ++ ++ M+ G+ + ++Y LM
Sbjct: 247 IKEFSVKGIKPEAYTYNT-IINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSV 305
Query: 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFN 343
KN M +A+K+++ + E G + + + I C GN +A+ +F E P
Sbjct: 306 KNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSY 365
Query: 344 TVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
T L++G+ K ++ A+ ++ ++ K
Sbjct: 366 TYGALIDGVCKVGEMGAAEILMNEMQSK 393
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 36/148 (24%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRL------------- 147
NLI Y + G + A R F +M G + I++N +++A C + ++
Sbjct: 474 NLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEAN 533
Query: 148 ---------------------YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186
D+ LF E+ K L + ++Y +++ +G SD+
Sbjct: 534 GMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLK-GLDQNSVTYTVMISGLSKAGKSDE 592
Query: 187 ALELLNEMENKGVEVTTVTYTTVLNCLY 214
A L +EM+ KG + YT ++ ++
Sbjct: 593 AFGLYDEMKRKGYTIDNKVYTALIGSMH 620
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 4/278 (1%)
Query: 103 LIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+I + G+ GM F + FD+M G I+FN+LL C+R L++ LFDE+ +
Sbjct: 309 VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR 368
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ D SY LL + C G D A E+L +M K + V+Y+TV++ K G +E
Sbjct: 369 -RIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDE 427
Query: 222 AERLWSEMEKKGVDLDVAAYNVRIT-NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L+ EM G+ LD +YN ++ T G E +++ EM G+K D ++YN L+
Sbjct: 428 ALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
Y K DE KKV+ ++ PN T+ T I G + +A ++F+E
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRA 547
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
D L++ L K + A +I + K+ PNV+
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVV 585
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 124/236 (52%), Gaps = 3/236 (1%)
Query: 93 KITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKV 151
+I Q+ + N L+ + + G D A QM +V+S++ ++ ++ +D+
Sbjct: 369 RIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEA 428
Query: 152 PILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN 211
LF E+ + ++ D++SY LL + G S++AL++L EM + G++ VTY +L
Sbjct: 429 LNLFGEM-RYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487
Query: 212 CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKP 270
KQG +E +++++EM+++ V ++ Y+ I + GG + E+ E + AGL+
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRA 547
Query: 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
D + Y+ L+ CKN ++ A + + + + G SPN T+ + I S D++
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 2/201 (0%)
Query: 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG-NAEEAERLWSE 228
++ L+ ++ SG ++A+ + N M+ G+ VTY V++ K G ++ + + E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 229 MEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM 287
M++ GV D +N + + GG E + L DEM + ++ D SYN L+ CK
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQ 389
Query: 288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKL 347
MD A ++ + PN ++ T I +G FD+A +F E + D +
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449
Query: 348 LVEGLVKKKKIKEAKGVIRTI 368
L+ K + +EA ++R +
Sbjct: 450 LLSIYTKVGRSEEALDILREM 470
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 2/196 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I + +AG FD A+ F +M LG +S+N LL T+ ++ + E+
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASV 473
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ D ++Y LL + G D+ ++ EM+ + V +TY+T+++ K G +EA
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
++ E + G+ DV Y+ I G LIDEM G+ P+ ++YN ++
Sbjct: 534 MEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593
Query: 282 YCKNEMMDEAKKVYEG 297
+ ++ MD + G
Sbjct: 594 FGRSATMDRSADYSNG 609
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 81/166 (48%), Gaps = 2/166 (1%)
Query: 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE--R 255
G T ++ +++ + G EEA +++ M++ G+ ++ YN I G E +
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQ 322
Query: 256 LKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY 315
+ + DEM+ G++PD I++N L+ + + + A+ +++ + + ++ T +
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382
Query: 316 HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
+C G D A+++ + + +P+ + +++G K + EA
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEA 428
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 260 IDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318
I E AG +T+ +++ L++ Y ++ + +EA V+ ++E G PN T+ + C
Sbjct: 255 IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNA-VIDAC 313
Query: 319 GSGN--FDKAYKVFKESVMVHKIPD---FNTV 345
G G F + K F E PD FN++
Sbjct: 314 GKGGMEFKQVAKFFDEMQRNGVQPDRITFNSL 345
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 117 MRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK 176
+ F +M +L +V++F+A+L AC+R ++ +L +E+ + ++ + +GLL+
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL-RLFDNKVYGVVHGLLMG 718
Query: 177 SHCDSGSSDKAL-ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE 223
+ ++L + +NEM+ + Y + + L+ G AE
Sbjct: 719 QRENVWLQAQSLFDKVNEMDG---STASAFYNALTDMLWHFGQKRGAE 763
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 180/356 (50%), Gaps = 5/356 (1%)
Query: 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETL 84
S+S L+SE +P A ++ S ++H S+ + +RRL++++ + + +
Sbjct: 7 SLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHI-LRRLSETRMVNHVSRI 65
Query: 85 IESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTPRSVISFNALLFACT 143
+E ++ E ++I++YG+ M D A+ F +M E+ G ++ S+N LL A
Sbjct: 66 VELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFV 125
Query: 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT 203
++ + KV LF ++P+ +Y +L+K C +KA L+ M +G +
Sbjct: 126 EAKQWVKVESLFAYFETA-GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDV 184
Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDE 262
+Y+TV+N L K G ++A L+ EM ++GV DV YN+ I D + EL D
Sbjct: 185 FSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDR 244
Query: 263 -MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321
+ D+ + P+ ++N +++ K +D+ K++E +++N + T+ + I+ LC +G
Sbjct: 245 LLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAG 304
Query: 322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL 377
N DKA VF E D T ++ G + KIKE+ + R ++ K N++
Sbjct: 305 NVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV 360
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 154/377 (40%), Gaps = 47/377 (12%)
Query: 65 QDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMD 124
++ + L+K R D + E K + + +LI AG D A F+++D
Sbjct: 258 HNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELD 317
Query: 125 ELGTPRSVISFNALLFA-CTRSRLYDKVPIL--------------------------FDE 157
E V+++N +L C ++ + + + DE
Sbjct: 318 ERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDE 377
Query: 158 IPKKYNLSP------DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN 211
+ L P DK +YG+ + C +G +KAL ++ E+E+ G + Y ++++
Sbjct: 378 ATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIID 437
Query: 212 CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG--DPERLKE---LIDEMRDA 266
CL K+ EEA L EM K GV+L+ N I GG RL E + EM
Sbjct: 438 CLCKKKRLEEASNLVKEMSKHGVELNSHVCNALI----GGLIRDSRLGEASFFLREMGKN 493
Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
G +P +SYN L+ CK EA + + ENG P+ T+ + LC D A
Sbjct: 494 GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLA 553
Query: 327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386
+++ + + D +L+ GL K+ +A V+ ++ + L + + E
Sbjct: 554 LELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEG 613
Query: 387 LGLVPAPAVGDGQKARV 403
VGD +A V
Sbjct: 614 F-----FKVGDSNRATV 625
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 135/272 (49%), Gaps = 8/272 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I +AG D A+ FD+M E G V +N L+ + + + L+D + +
Sbjct: 190 VINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDS 249
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
++ P+ ++ +++ G D L++ M+ E TY+++++ L GN ++A
Sbjct: 250 SVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKA 309
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE--RLKELIDEMRDAGLK--PDTISYNFL 278
E +++E++++ +DV YN + GG ++KE ++ R K + +SYN L
Sbjct: 310 ESVFNELDERKASIDVVTYNTML----GGFCRCGKIKESLELWRIMEHKNSVNIVSYNIL 365
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ +N +DEA ++ + G + + TT+ +I+ LC +G +KA V +E
Sbjct: 366 IKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGG 425
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
D +++ L KKK+++EA +++ + K
Sbjct: 426 HLDVYAYASIIDCLCKKKRLEEASNLVKEMSK 457
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 16/256 (6%)
Query: 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN-----LIRS--YGQAGMFDH 115
YA + L K KR + L++ + + ++CN LIR G+A F
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKE-MSKHGVELNSHVCNALIGGLIRDSRLGEASFF-- 486
Query: 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175
+M + G +V+S+N L+ ++ + + E+ + PD +Y +LL
Sbjct: 487 ----LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLEN-GWKPDLKTYSILL 541
Query: 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD 235
C D ALEL ++ G+E + + +++ L G ++A + + ME +
Sbjct: 542 CGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCT 601
Query: 236 LDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKV 294
++ YN + + GD R + M GL+PD ISYN +M C + A +
Sbjct: 602 ANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEF 661
Query: 295 YEGLEENGCSPNATTF 310
++ +G P T+
Sbjct: 662 FDDARNHGIFPTVYTW 677
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 2/178 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI +AG F A +M E G + +++ LL R R D L+ + +
Sbjct: 505 LICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQS- 563
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L D + + +L+ C G D A+ ++ ME++ VTY T++ +K G++ A
Sbjct: 564 GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRA 623
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
+W M K G+ D+ +YN + E D+ R+ G+ P ++N L+
Sbjct: 624 TVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 171/340 (50%), Gaps = 5/340 (1%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPY 99
D AL I+ K + + + +L++++ F +E+L+ +N P E
Sbjct: 63 DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENL 122
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
+L+R+YG AG ++ +MR F ++ + G RSV S N LL +++ +D V +F
Sbjct: 123 FIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSK 182
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
+ + ++P+ + LL+K+ C + A ++L+E+ + G+ VTYTT+L +G+
Sbjct: 183 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDM 242
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTISYNF 277
E A+R+ EM +G D Y V + + Y G ++D+M ++P+ ++Y
Sbjct: 243 ESAKRVLEEMLDRGWYPDATTYTV-LMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGV 301
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337
++ CK + EA+ +++ + E P+++ I LC D+A ++++ + +
Sbjct: 302 MIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNN 361
Query: 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL 377
+PD + L+ L K+ ++ EA+ + +K P++L
Sbjct: 362 CMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLL 401
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 144/332 (43%), Gaps = 41/332 (12%)
Query: 72 LAKSKRFSDIETLIESHKNDPKITQEPYLCNL-IRSYGQAGMFDHAMRTFDQMDELGTPR 130
L +++RF + + ++ K IT + CNL +++ + + A + D++ +G
Sbjct: 165 LIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVP 224
Query: 131 SVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALE 189
+++++ +L R + +L + + + + PD +Y +L+ +C G +A
Sbjct: 225 NLVTYTTILGGYVARGDMESAKRVLEEMLDRGW--YPDATTYTVLMDGYCKLGRFSEAAT 282
Query: 190 LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM-------------------- 229
++++ME +E VTY ++ L K+ + EA ++ EM
Sbjct: 283 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALC 342
Query: 230 EKKGVDLDVAAYNVRITNTYGGDPERLKELI----------------DEMRDAGLKPDTI 273
E VD + + N D L LI DE + G P +
Sbjct: 343 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLL 401
Query: 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES 333
+YN L+ C+ + EA ++++ + E C PNA T+ I L +GN + +V +E
Sbjct: 402 TYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEM 461
Query: 334 VMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+ + P+ T +L EGL K K ++A ++
Sbjct: 462 LEIGCFPNKTTFLILFEGLQKLGKEEDAMKIV 493
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 3/238 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
L+ Y + G F A D M++ + +++ ++ A + + + +FDE+ ++
Sbjct: 267 LMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER- 325
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ PD ++ + C+ D+A L +M +T+++ L K+G EA
Sbjct: 326 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEA 385
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+L+ E EK + + YN I G+ L D+M + KP+ +YN L+
Sbjct: 386 RKLFDEFEKGSIP-SLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEG 444
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
KN + E +V E + E GC PN TTF L G + A K+ +VM K+
Sbjct: 445 LSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV 502
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 17/298 (5%)
Query: 85 IESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR 144
IE N Q+ Y +LIRSYG AG+F +++ F M ++G SV++FN+LL +
Sbjct: 126 IERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLK 185
Query: 145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV 204
LFDE+ + Y ++PD ++ L+ C + D+A + +ME V
Sbjct: 186 RGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVV 245
Query: 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL--DVAAYNVRITNTYGGDPERLKELIDE 262
TY T+++ L + G + A + S M KK D+ +V +Y + +K+ IDE
Sbjct: 246 TYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC------MKQEIDE 299
Query: 263 -------MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE--NGCSPNATTFRTW 313
M GLKP+ ++YN L+ + DE K + G + +P+A TF
Sbjct: 300 AVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNIL 359
Query: 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
I C +G+ D A KVF+E + + PD + +L+ L + + A+ + + +K
Sbjct: 360 IKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEK 417
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 29/253 (11%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP-ILFDEIPKK 161
L+R Y D A+ F M G + +++N L+ + + YD++ IL
Sbjct: 287 LVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAF 346
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+PD ++ +L+K+HCD+G D A+++ EM N + + +Y+ ++ L + +
Sbjct: 347 TTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDR 406
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
AE L++E+ +K V L G D KP +YN +
Sbjct: 407 AETLFNELFEKEVLL-------------GKDE--------------CKPLAAAYNPMFEY 439
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
C N +A+KV+ L + G + +++T I C G F AY++ + +PD
Sbjct: 440 LCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPD 498
Query: 342 FNTVKLLVEGLVK 354
T +LL++GL+K
Sbjct: 499 LETYELLIDGLLK 511
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 170/331 (51%), Gaps = 14/331 (4%)
Query: 48 YSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107
+S +HY V A + + AK +++ + LI + + + E + C ++R Y
Sbjct: 123 WSEKQRHYEHSVR---AYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETF-CIVMRKY 178
Query: 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD 167
+A D A+ F+ M++ P ++++FN LL A +S+ K +F+ + ++ +PD
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRF--TPD 236
Query: 168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS 227
+Y +LL+ + KA E+ EM + G VTY+ +++ L K G +EA +
Sbjct: 237 SKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVR 296
Query: 228 EMEKKGVDLDVAAYNVRITNTYGGDPERLKELID---EMRDAGLKPDTISYNFLMTCYCK 284
M+ Y+V + +TYG + RL+E +D EM +G+K D +N L+ +CK
Sbjct: 297 SMDPSICKPTTFIYSV-LVHTYGTE-NRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCK 354
Query: 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344
M +V + ++ G +PN+ + + HL G D+A+ VF++ + V + PD +T
Sbjct: 355 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCE-PDADT 413
Query: 345 VKLLVEGLVKKKKIKEAKGVIRTIKKK--FP 373
++++ +KK+++ A V + ++KK FP
Sbjct: 414 YTMVIKMFCEKKEMETADKVWKYMRKKGVFP 444
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 38/312 (12%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI G A+ D+M E+G +I+ N L+ S + +L D++ + Y
Sbjct: 164 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE-Y 222
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
P+ ++YG +L C SG + A+ELL +ME + +++ V Y+ +++ L K G+ + A
Sbjct: 223 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 282
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN---------------------------TYG----- 250
L++EME KG+ ++ YN+ I T+
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 342
Query: 251 ----GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
G +EL EM G+ PDTI+Y L+ +CK +D+A ++ + + GC PN
Sbjct: 343 FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402
Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
TF I C + D ++F++ + + D T L++G + K+ AK + +
Sbjct: 403 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 462
Query: 367 -TIKKKFPPNVL 377
+ +K PPN++
Sbjct: 463 EMVSRKVPPNIV 474
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 136/263 (51%), Gaps = 8/263 (3%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
+I + G D+A F++M+ G ++I++N L+ C R D +L D I +K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
N P+ +++ +L+ S G +A EL EM ++G+ T+TYT++++ K+ + ++
Sbjct: 329 IN--PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK---ELIDEMRDAGLKPDTISYNFL 278
A ++ M KG D ++ +N+ I N Y R+ EL +M G+ DT++YN L
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILI-NGYC-KANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ +C+ ++ AK++++ + PN T++ + LC +G +KA ++F++
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 339 IPDFNTVKLLVEGLVKKKKIKEA 361
D +++ G+ K+ +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDA 527
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 168/372 (45%), Gaps = 16/372 (4%)
Query: 8 RRLCTATTAAGS----STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRY 63
R+LC A +A G ++I+ S + L E +AL++ + + P
Sbjct: 137 RKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP--DLI 194
Query: 64 AQDLTVRRLAKSKRFSD----IETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
+ V L S + ++ I+ ++E +T P L N++ GQ + AM
Sbjct: 195 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVL-NVMCKSGQTAL---AMEL 250
Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179
+M+E + ++ ++ + D LF+E+ K ++ + I+Y +L+ C
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFC 309
Query: 180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA 239
++G D +LL +M + + VT++ +++ K+G EAE L EM +G+ D
Sbjct: 310 NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369
Query: 240 AYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
Y I + ++ +++D M G P+ ++N L+ YCK +D+ +++ +
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
G + T+ T I C G + A ++F+E V P+ T K+L++GL +
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 359 KEAKGVIRTIKK 370
++A + I+K
Sbjct: 490 EKALEIFEKIEK 501
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 4/253 (1%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPK 160
+LI + + D A + D M G ++ +FN L+ C +R+ D + LF ++
Sbjct: 373 SLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE-LFRKMSL 431
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
+ + D ++Y L++ C+ G + A EL EM ++ V VTY +L+ L G +E
Sbjct: 432 R-GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESE 490
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLM 279
+A ++ ++EK ++LD+ YN+ I + +L + G+KP +YN ++
Sbjct: 491 KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMI 550
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
CK + EA+ ++ +EE+G +P+ T+ I G G+ K+ K+ +E
Sbjct: 551 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Query: 340 PDFNTVKLLVEGL 352
D +T+K++++ L
Sbjct: 611 VDASTIKMVIDML 623
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 2/248 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI S+ + G A +M G I++ +L+ + DK + D + K
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK- 397
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
P+ ++ +L+ +C + D LEL +M +GV TVTY T++ + G A
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ L+ EM + V ++ Y + + G+ E+ E+ +++ + ++ D YN ++
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 517
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
C +D+A ++ L G P T+ I LC G +A +F++ PD
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Query: 342 FNTVKLLV 349
T +L+
Sbjct: 578 GWTYNILI 585
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 37/249 (14%)
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGV-------------------------- 199
P I + L + + D L L +ME KG+
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 200 ---------EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TY 249
E T+T++T++N L +G EA L M + G D+ N +
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT 309
G LID+M + G +P+ ++Y ++ CK+ A ++ +EE +A
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR-TI 368
+ I LC G+ D A+ +F E M + T +L+ G + + ++R I
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 369 KKKFPPNVL 377
K+K PNV+
Sbjct: 326 KRKINPNVV 334
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 40/313 (12%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + G A+ D+M E+ +++ + L+ C + R+ + + +L D + +
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL-VLIDRMVE- 203
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y PD+++YG +L C SG+S AL+L +ME + ++ + V Y+ V++ L K G+ ++
Sbjct: 204 YGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDD 263
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN---------------------------TYG---- 250
A L++EME KG+ DV Y+ I T+
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALID 323
Query: 251 -----GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
G KEL +EM G+ PDTI+YN L+ +CK + EA ++++ + GC P
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+ T+ I C + D ++F+E IP+ T LV G + K+ AK +
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443
Query: 366 R-TIKKKFPPNVL 377
+ + + PP+V+
Sbjct: 444 QEMVSRGVPPSVV 456
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 6/291 (2%)
Query: 81 IETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140
I+ ++E ++T P L L +S A A+ F +M+E SV+ ++ ++
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSA----LALDLFRKMEERNIKASVVQYSIVID 253
Query: 141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE 200
+ + +D LF+E+ K + D ++Y L+ C+ G D ++L EM + +
Sbjct: 254 SLCKDGSFDDALSLFNEMEMK-GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312
Query: 201 VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKEL 259
VT++ +++ K+G EA+ L++EM +G+ D YN I + ++
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319
D M G +PD ++Y+ L+ YCK + +D+ +++ + G PN T+ T + C
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432
Query: 320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
SG + A ++F+E V P T +L++GL ++ +A + ++K
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 152/307 (49%), Gaps = 43/307 (14%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
+I S + G FD A+ F++M+ G V+++++L+ C + D +L + I +
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR- 309
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
N+ PD +++ L+ G +A EL NEM +G+ T+TY ++++ K+ E
Sbjct: 310 -NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHE 368
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRDAGLKPDTISYNFL 278
A +++ M KG + D+ Y++ I N+Y +R+ + L E+ GL P+TI+YN L
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILI-NSYC-KAKRVDDGMRLFREISSKGLIPNTITYNTL 426
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE------ 332
+ +C++ ++ AK++++ + G P+ T+ + LC +G +KA ++F++
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 333 -------SVMVHKI----------------------PDFNTVKLLVEGLVKKKKIKEAKG 363
++++H + PD T +++ GL KK + EA
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 546
Query: 364 VIRTIKK 370
+ R +K+
Sbjct: 547 LFRKMKE 553
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 4/257 (1%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI + + A + FD M G +++++ L+ + +++ D LF EI K
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L P+ I+Y L+ C SG + A EL EM ++GV + VTY +L+ L G +
Sbjct: 415 -GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMT 280
A ++ +M+K + L + YN+ I + L + D G+KPD ++YN ++
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 533
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI-YHLCGSGNFDKAYKVFKESVMVHKI 339
CK + EA ++ ++E+GC+P+ T+ I HL GSG + ++ +E +
Sbjct: 534 GLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG-LISSVELIEEMKVCGFS 592
Query: 340 PDFNTVKLLVEGLVKKK 356
D +T+K++++ L ++
Sbjct: 593 ADSSTIKMVIDMLSDRR 609
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 41/287 (14%)
Query: 114 DHAMRTFDQMDE---LGTPRSVISFNALLFACTRSRLYD--------------------- 149
+ A+ F+ M + L TP I FN L A R++ YD
Sbjct: 52 NDAIDLFESMIQSRPLPTP---IDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTM 108
Query: 150 -----------KVPILFDEIPKKYNLS--PDKISYGLLLKSHCDSGSSDKALELLNEMEN 196
K+ F + + + L PD I++ L+ C G +A+ L++ M
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPER 255
VT +T++N L +G EA L M + G D Y + G+
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 256 LKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY 315
+L +M + +K + Y+ ++ CK+ D+A ++ +E G + T+ + I
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 316 HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
LC G +D K+ +E + + IPD T L++ VK+ K+ EAK
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
G++ D + ++ CYC+ + + A V + G P+ TF T + C G +A
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPN 375
+ V + + PD TV L+ GL K ++ EA +I R ++ F P+
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 209
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 6/272 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
+I + Q G A + F +M G ++F L+ C + D + I +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI--Q 449
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
SP+ ++Y L+ C G D A ELL+EM G++ TY +++N L K GN EE
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 509
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTY--GGDPERLKELIDEMRDAGLKPDTISYNFLM 279
A +L E E G++ D Y + + Y G+ ++ +E++ EM GL+P +++N LM
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTT-LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
+C + M+++ +K+ + G +PNATTF + + C N A ++K+
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628
Query: 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
PD T + LV+G K + +KEA + + +K K
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 660
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 134/270 (49%), Gaps = 2/270 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI Y +AG A R + M + G +V+++ L+ + D L E+ K
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM-WKI 485
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L P+ +Y ++ C SG+ ++A++L+ E E G+ TVTYTT+++ K G ++A
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ + EM KG+ + +NV + G E ++L++ M G+ P+ ++N L+
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
YC + A +Y+ + G P+ T+ + C + N +A+ +F+E
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
+T +L++G +K+KK EA+ V ++++
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 5/265 (1%)
Query: 116 AMRTFDQMDELGTPRSVISFNALL-FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL 174
A+ F + E+G +V S+N ++ F C R+ + +L K Y +PD ISY +
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGY--TPDVISYSTV 287
Query: 175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234
+ +C G DK +L+ M+ KG++ + Y +++ L + EAE +SEM ++G+
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
Query: 235 DLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKK 293
D Y I GD + EM + PD ++Y +++ +C+ M EA K
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407
Query: 294 VYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353
++ + G P++ TF I C +G+ A++V + P+ T L++GL
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467
Query: 354 KKKKIKEAKGVIRTIKK-KFPPNVL 377
K+ + A ++ + K PN+
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIF 492
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI + G D A +M ++G ++ ++N+++ +S ++ L E
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA- 520
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L+ D ++Y L+ ++C SG DKA E+L EM KG++ T VT+ ++N G E+
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI------------TNTY------GGDPE---------- 254
E+L + M KG+ + +N + T Y G P+
Sbjct: 581 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 640
Query: 255 -----RLKE---LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
+KE L EM+ G +Y+ L+ + K + EA++V++ + G + +
Sbjct: 641 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Query: 307 ATTF 310
F
Sbjct: 701 KEIF 704
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + GM + + + M G + +FN+L+ C R+ L I D +
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR- 625
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ PD +Y L+K HC + + +A L EM+ KG V+ TY+ ++ K+ E
Sbjct: 626 -GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLE 684
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGD-PERLKELIDEM 263
A ++ +M ++G+ D ++ Y G P+ + + IDE+
Sbjct: 685 AREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEI 727
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 7/262 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I G+ G+ D + FD+M G RSV S+ AL+ A R+ Y+ L D + K
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM-KNE 205
Query: 163 NLSPDKISYGLLLKSHCDSGSSD--KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
+SP ++Y ++ + C G D L L EM ++G++ VTY T+L+ +G +
Sbjct: 206 KISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGD 264
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGG--DPERLKELIDEMRDAGLKPDTISYNFL 278
EAE ++ M G+ D+ Y+ + T+G E++ +L+ EM G PD SYN L
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYS-HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL 323
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ Y K+ + EA V+ ++ GC+PNA T+ + SG +D ++F E +
Sbjct: 324 LEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNT 383
Query: 339 IPDFNTVKLLVEGLVKKKKIKE 360
PD T +L+E + KE
Sbjct: 384 DPDAATYNILIEVFGEGGYFKE 405
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 2/218 (0%)
Query: 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCL 213
LF + ++ P++ Y +++ G DK LE+ +EM ++GV + +YT ++N
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG--DPERLKELIDEMRDAGLKPD 271
+ G E + L M+ + + + YN I G D E L L EMR G++PD
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 246
Query: 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331
++YN L++ + DEA+ V+ + + G P+ TT+ + +K +
Sbjct: 247 IVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLG 306
Query: 332 ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369
E +PD + +L+E K IKEA GV ++
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 125/267 (46%), Gaps = 3/267 (1%)
Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
G+ D A F M++ G + +++ L+ + R +KV L E+ +L PD S
Sbjct: 261 GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL-PDITS 319
Query: 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
Y +LL+++ SGS +A+ + ++M+ G TY+ +LN + G ++ +L+ EM+
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379
Query: 231 KKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD 289
D D A YN+ I GG + + L +M + ++PD +Y ++ K + +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439
Query: 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349
+A+K+ + + N P++ + I + +++A F V P T L+
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499
Query: 350 EGLVKKKKIKEAKGVI-RTIKKKFPPN 375
+ +KE++ ++ R + P N
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRN 526
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 147/334 (44%), Gaps = 11/334 (3%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
DK L+++ + S S ++ + ++ R+ L++ KN+ KI+
Sbjct: 158 DKCLEVFDEMPSQGVS--RSVFSYTALINAYGRNGRYETSLELLDRMKNE-KISPSILTY 214
Query: 102 N-LIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
N +I + + G+ ++ + F +M G ++++N LL AC L D+ ++F +
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
+ PD +Y L+++ +K +LL EM + G +Y +L K G+
Sbjct: 275 DG-GIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSI 333
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTISYNF 277
+EA ++ +M+ G + Y+V + N +G G + +++L EM+ + PD +YN
Sbjct: 334 KEAMGVFHQMQAAGCTPNANTYSV-LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNI 392
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF-DKAYKVFKESVMV 336
L+ + + E ++ + E P+ T+ I+ CG G + A K+ +
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFA-CGKGGLHEDARKILQYMTAN 451
Query: 337 HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
+P ++E + +EA T+ +
Sbjct: 452 DIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 125/284 (44%), Gaps = 7/284 (2%)
Query: 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127
T +L + ++ D+ + S + P IT L + +Y ++G AM F QM G
Sbjct: 291 TFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL---LEAYAKSGSIKEAMGVFHQMQAAG 347
Query: 128 TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187
+ +++ LL +S YD V LF E+ K N PD +Y +L++ + G +
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEM-KSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247
+ L ++M + +E TY ++ K G E+A ++ M + AY +
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAY-TGVIE 465
Query: 248 TYGGDPERLKELI--DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
+G + L+ + M + G P +++ L+ + + ++ E++ + L ++G
Sbjct: 466 AFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPR 525
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349
N TF I G F++A K + + PD T++ ++
Sbjct: 526 NRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 37/203 (18%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I ++GQA +++ A+ F+ M E+G+ S+ +F++LL++ R
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARG----------------- 505
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
GL+ +S +L+ + + G+ T+ + + G EEA
Sbjct: 506 ---------GLVKESEA----------ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546
Query: 223 ERLWSEMEKKGVDLDVAAYNVRIT-NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ + +MEK D D ++ ++ + +E +EM+ + + P + Y ++
Sbjct: 547 VKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAV 606
Query: 282 YCKNEMMDEAKKVYEGLEENGCS 304
Y K E D+ ++ E + N S
Sbjct: 607 YGKTERWDDVNELLEEMLSNRVS 629
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 10/257 (3%)
Query: 127 GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186
G V +FN+L+ +R + LF+E+ K PD+ +Y +L+ S C G D+
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDE 453
Query: 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246
AL +L +ME G + +TY T+++ K EAE ++ EME GV + YN I
Sbjct: 454 ALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 247 NTYGG-DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
E +L+D+M G KPD +YN L+T +C+ + +A + + + NGC P
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEP 573
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVM--VHKIPD-FNTVKLLVEGLVKKKKIKEAK 362
+ T+ T I LC +G + A K+ + M ++ P +N V ++GL +K+K EA
Sbjct: 574 DIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPV---IQGLFRKRKTTEAI 630
Query: 363 GVIRTI--KKKFPPNVL 377
+ R + + + PP+ +
Sbjct: 631 NLFREMLEQNEAPPDAV 647
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 178/432 (41%), Gaps = 78/432 (18%)
Query: 12 TATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKH-YASPVSSRYAQDLTVR 70
T + A+ S SS V K LRS+ D AL +++ SK SP + Y + L
Sbjct: 35 TISFASPHSAALSSTDV-KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILL-- 91
Query: 71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM-DELGT- 128
RL +S F D++ ++E K+ LI SY Q + D + D M DE G
Sbjct: 92 RLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLK 151
Query: 129 PRS----------------------------------VISFNALLFACTRSRLYDKVPIL 154
P + V +FN L+ A R+ ++
Sbjct: 152 PDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211
Query: 155 FDEIPKKYNLSPDK-----------------------------------ISYGLLLKSHC 179
+++P Y L PD+ +S +++ C
Sbjct: 212 LEDMPS-YGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270
Query: 180 DSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
G + AL + EM N+ G T+ T++N L K G+ + A + M ++G D DV
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330
Query: 239 AAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297
YN I+ G+ + E++D+M P+T++YN L++ CK ++EA ++
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARV 390
Query: 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357
L G P+ TF + I LC + N A ++F+E PD T +L++ L K K
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 358 IKEAKGVIRTIK 369
+ EA +++ ++
Sbjct: 451 LDEALNMLKQME 462
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 135/302 (44%), Gaps = 3/302 (0%)
Query: 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125
++ ++ L ++ + ++E + + E +++ Y + G D A+R +QM E
Sbjct: 193 NVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVE 252
Query: 126 LGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184
G S +S N ++ C R+ D + + E+ + PD+ ++ L+ C +G
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFI-QEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311
Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
A+E+++ M +G + TY +V++ L K G +EA + +M + + YN
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
Query: 245 ITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303
I+ + E EL + G+ PD ++N L+ C A +++E + GC
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363
P+ T+ I LC G D+A + K+ + T L++G K K +EA+
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491
Query: 364 VI 365
+
Sbjct: 492 IF 493
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 122/254 (48%), Gaps = 4/254 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI S G D A+ QM+ G RSVI++N L+ ++ + +FDE+ + +
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM-EVH 499
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+S + ++Y L+ C S + A +L+++M +G + TY ++L + G+ ++A
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ M G + D+ Y I+ G E +L+ ++ G+ +YN ++
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Query: 282 YCKNEMMDEAKKVY-EGLEENGCSPNATTFRTWIYHLC-GSGNFDKAYKVFKESVMVHKI 339
+ EA ++ E LE+N P+A ++R LC G G +A E + +
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFV 679
Query: 340 PDFNTVKLLVEGLV 353
P+F+++ +L EGL+
Sbjct: 680 PEFSSLYMLAEGLL 693
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 17/265 (6%)
Query: 126 LGTPRSVISF-----------NALLFACTRSRLYDKVPI-LFDEIPKKYNLSPDKISYGL 173
L P S ISF + L RS+ D + LF+ KK N SP+ Y
Sbjct: 29 LTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEE 88
Query: 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM-EKK 232
+L SGS D ++L +M++ E+ T T+ ++ + +E + M ++
Sbjct: 89 ILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEF 148
Query: 233 GVDLDVAAYNVRITNTYGGDPERLKELID-EMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
G+ D YN + G+ +L E+ +M G+KPD ++N L+ C+ + A
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351
+ E + G P+ TF T + G+ D A ++ ++ V +V ++V G
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 352 LVKKKKIKEAKGVIRTIKKK---FP 373
K+ ++++A I+ + + FP
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFP 293
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 155/326 (47%), Gaps = 7/326 (2%)
Query: 43 KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102
KAL + + H+ V + DL + A+ + +LI ++ +I P
Sbjct: 72 KALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRS-LRIGPSPKTFA 130
Query: 103 LI-RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
++ Y AG D A++ F M E G + + SFN +L +S+ +K LF + +
Sbjct: 131 IVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR 190
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ S D ++Y ++L C + KALE+L EM +G+ TY T+L ++ G
Sbjct: 191 F--SVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTISYNFLM 279
A + EM+K+ ++DV Y + + +G G+ +R + + DEM G+ P +YN ++
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTT-VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMI 307
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
CK + ++ A ++E + G PN TT+ I L +G F + ++ +
Sbjct: 308 QVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCE 367
Query: 340 PDFNTVKLLVEGLVKKKKIKEAKGVI 365
P+F T +++ + ++++A G+
Sbjct: 368 PNFQTYNMMIRYYSECSEVEKALGLF 393
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 161/335 (48%), Gaps = 8/335 (2%)
Query: 35 LRSEFDPDKALDIYSSVSKHYA-SPVSSRYAQDLTVRRLAKSKRFSDIE-TLIESHKNDP 92
++ + DP KAL++++S+ K S Y + +L +F +E L++ +N
Sbjct: 14 IKCQKDPMKALEMFNSMRKEVGFKHTLSTYRS--VIEKLGYYGKFEAMEEVLVDMRENVG 71
Query: 93 KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152
E +++YG+ G A+ F++MD +V S+NA++ S +D+
Sbjct: 72 NHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAH 131
Query: 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC 212
++ + + ++PD S+ + +KS C + AL LLN M ++G E+ V Y TV+
Sbjct: 132 KVYMRMRDR-GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGG 190
Query: 213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYN--VRITNTYGGDPERLKELIDEMRDAGLKP 270
Y++ E L+ +M GV L ++ +N +R+ GD + ++L+D++ G+ P
Sbjct: 191 FYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVL-CKKGDVKECEKLLDKVIKRGVLP 249
Query: 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVF 330
+ +YN + C+ +D A ++ L E G P+ T+ IY LC + F +A
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 331 KESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+ V PD T L+ G K ++ A+ ++
Sbjct: 310 GKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIV 344
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 12/307 (3%)
Query: 72 LAKSKRFSDIETLIESHKNDPKITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMDELGTPR 130
L K+ +F + E + N+ + + Y N LI Y + GM A R G
Sbjct: 296 LCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVP 354
Query: 131 SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALEL 190
++ +L+ ++ LF+E K + P+ I Y L+K + G +A +L
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGK-GIKPNVILYNTLIKGLSNQGMILEAAQL 413
Query: 191 LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG 250
NEM KG+ T+ ++N L K G +A+ L M KG D+ +N+ I
Sbjct: 414 ANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIH---- 469
Query: 251 GDPERLK-----ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
G +LK E++D M D G+ PD +YN L+ CK ++ + Y+ + E GC+P
Sbjct: 470 GYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
N TF + LC D+A + +E PD T L++G K + A +
Sbjct: 530 NLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589
Query: 366 RTIKKKF 372
R +++ +
Sbjct: 590 RKMEEAY 596
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 43/324 (13%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI+ GM A + ++M E G V +FN L+ C + D ++ I K
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y PD ++ +L+ + + ALE+L+ M + GV+ TY ++LN L K E+
Sbjct: 457 Y--FPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFED 514
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
+ M +KG ++ +N+ + + Y E L L++EM++ + PD +++ L+
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALG-LLEEMKNKSVNPDAVTFGTLI 573
Query: 280 TCYCKNEMMDEAKKVYEGLEE-----------------------------------NGC- 303
+CKN +D A ++ +EE + C
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCL 633
Query: 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363
P+ T+R + C +GN + YK E + IP T+ ++ L + ++ EA G
Sbjct: 634 GPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAG 693
Query: 364 VI-RTIKKKFPPNVLRAWKKVEEE 386
+I R ++K P + V+++
Sbjct: 694 IIHRMVQKGLVPEAVNTICDVDKK 717
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 133/336 (39%), Gaps = 60/336 (17%)
Query: 37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ 96
++ + AL+I + + P Y + + L K+ +F D+ +E++K +
Sbjct: 473 TQLKMENALEILDVMLDNGVDP--DVYTYNSLLNGLCKTSKFEDV---METYKTMVEKGC 527
Query: 97 EPYLCN---LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI 153
P L L+ S + D A+ ++M
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEM------------------------------ 557
Query: 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNC 212
K +++PD +++G L+ C +G D A L +ME V +T TY +++
Sbjct: 558 ------KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611
Query: 213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPD 271
++ N AE+L+ EM + + D Y + + G+ + + EM + G P
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671
Query: 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK----AY 327
+ ++ C C + + EA + + + G P A +C + DK A
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN------TIC---DVDKKEVAAP 722
Query: 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363
K+ E ++ + +LL +GL + K++++ KG
Sbjct: 723 KLVLEDLLKKSCITYYAYELLFDGL-RDKRLRKKKG 757
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI+++ Q F AMR +M E G + +N+L+ ++++ D+ E+ +
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN- 516
Query: 163 NLSPDKISYGLLLKSHCDS---GSSDKALE----------------LLNE---------- 193
L P+ +YG + + ++ S+DK ++ L+NE
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576
Query: 194 ------MENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247
M ++G+ TYT ++N L+K ++AE ++ EM KG+ DV +Y V I
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636
Query: 248 -TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
+ G+ ++ + DEM + GL P+ I YN L+ +C++ +++AK++ + + G PN
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696
Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
A T+ T I C SG+ +A+++F E + +PD LV+G + ++ A +
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756
Query: 367 TIKK-----KFPPNVLRAW 380
T KK P N L W
Sbjct: 757 TNKKGCASSTAPFNALINW 775
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 7/258 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI + + G A FD+M E G +VI +N LL RS +K L DE+ K
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK- 691
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L P+ ++Y ++ +C SG +A L +EM+ KG+ + YTT+++ + + E A
Sbjct: 692 GLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGL----KPDTISYNF 277
++ KKG A +N I + G E E+++ + D KP+ ++YN
Sbjct: 752 ITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337
++ CK ++ AK+++ ++ P T+ + + G + + VF E++
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870
Query: 338 KIPDFNTVKLLVEGLVKK 355
PD +++ +K+
Sbjct: 871 IEPDHIMYSVIINAFLKE 888
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 128/291 (43%), Gaps = 12/291 (4%)
Query: 94 ITQEPYL---CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK 150
I +PY+ C + S + G+ + A FD M G ++ +L+ R + +
Sbjct: 343 INIKPYMYDCCICVMS--KEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQ 400
Query: 151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVL 210
L E+ KK N+ +YG ++K C SG D A ++ EM G V YTT++
Sbjct: 401 GYELLVEM-KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459
Query: 211 NCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRDAG 267
+ +A R+ EM+++G+ D+ YN I +R+ E + EM + G
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL--SKAKRMDEARSFLVEMVENG 517
Query: 268 LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327
LKP+ +Y ++ Y + A K + + E G PN I C G +A
Sbjct: 518 LKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEAC 577
Query: 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK-KKFPPNVL 377
++ V + D T +L+ GL K K+ +A+ + R ++ K P+V
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF 628
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 2/216 (0%)
Query: 164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE 223
L P K +Y +L+ C + A LL EM++ GV + TY+ +++ L K NA+ A+
Sbjct: 273 LVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAK 332
Query: 224 RLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282
L EM G+++ Y+ I + G E+ K L D M +GL P +Y L+ Y
Sbjct: 333 GLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392
Query: 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF 342
C+ + + + ++ +++ + T+ T + +C SG+ D AY + KE + P+
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452
Query: 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
L++ ++ + +A V++ +K++ P++
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 15/276 (5%)
Query: 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160
C +I Y ++G A R FD+M G + L+ C R ++ +F
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG--TN 758
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV----TTVTYTTVLNCLYKQ 216
K + + L+ G ++ E+LN + + + VTY +++ L K+
Sbjct: 759 KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTIS 274
GN E A+ L+ +M+ + V Y + N Y G + + DE AG++PD I
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYT-SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 275 YNFLMTCYCKNEMMDEAKKVYEGL-----EENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329
Y+ ++ + K M +A + + + ++GC + +T R + G + A KV
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 330 FKESVMVHKIPDFNTV-KLLVEGLVKKKKIKEAKGV 364
+ V + IPD TV +L+ E + + EA V
Sbjct: 938 MENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 12/168 (7%)
Query: 77 RFSDIE---TLIESHKNDPKITQEPY--LCNLIRSYGQAGMFDHAM-RTFD-QMDELGTP 129
R +D+E T+ ++K + P+ L N + +G+ + + R D D G P
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803
Query: 130 RSVISFNALL-FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
V ++N ++ + C L + LF ++ + NL P I+Y LL + G +
Sbjct: 804 NDV-TYNIMIDYLCKEGNL-EAAKELFHQM-QNANLMPTVITYTSLLNGYDKMGRRAEMF 860
Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM-EKKGVD 235
+ +E G+E + Y+ ++N K+G +A L +M K VD
Sbjct: 861 PVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 135/249 (54%), Gaps = 6/249 (2%)
Query: 127 GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186
G +FN L+ A S D LFDE+P+K P++ ++G+L++ +C +G +DK
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEK-GCKPNEFTFGILVRGYCKAGLTDK 200
Query: 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246
LELLN ME+ GV V Y T+++ ++G +++E++ +M ++G+ D+ +N RI+
Sbjct: 201 GLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRIS 260
Query: 247 NTYGG----DPERLKELIDEMRDAGL-KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301
D R+ ++ GL +P++I+YN ++ +CK ++++AK ++E + EN
Sbjct: 261 ALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREN 320
Query: 302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
+ ++ W+ L G F +A V K+ P + +L++GL K + +A
Sbjct: 321 DDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDA 380
Query: 362 KGVIRTIKK 370
K ++ +K+
Sbjct: 381 KTIVGLMKR 389
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 152/358 (42%), Gaps = 40/358 (11%)
Query: 51 VSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES-HKNDPKITQEPY---LCNLIRS 106
+ ++ P + +L ++ K D +TL ES +ND + + Y L L+R
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRH 339
Query: 107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLS 165
G F A QM + G S+ S+N L+ C L D I+ + K+ +
Sbjct: 340 ----GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIV--GLMKRNGVC 393
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225
PD ++YG LL +C G D A LL EM T +L+ L+K G EAE L
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEEL 453
Query: 226 WSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAG----------------- 267
+M +KG LD N+ + G G+ ++ E++ MR G
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513
Query: 268 ------LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321
PD I+Y+ L+ CK EAK ++ + P++ + +I+H C G
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQG 573
Query: 322 NFDKAYKVFK--ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNV 376
A++V K E HK T L+ GL K +I E G++ +K+K PN+
Sbjct: 574 KISSAFRVLKDMEKKGCHK--SLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNI 629
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 163/371 (43%), Gaps = 43/371 (11%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
DKA + V + S Y +L + K +R + L + I + Y
Sbjct: 92 DKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVL-CGIAPQTYTF 150
Query: 102 NL-IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160
NL IR+ + D A FD+M E G + +F L+ ++ L DK L + + +
Sbjct: 151 NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAM-E 209
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
+ + P+K+ Y ++ S C G +D + +++ +M +G+ VT+ + ++ L K+G
Sbjct: 210 SFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVL 269
Query: 221 EAERLWSEME-----------------------KKGVDLD----------------VAAY 241
+A R++S+ME K G+ D + +Y
Sbjct: 270 DASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSY 329
Query: 242 NVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
N+ + G + ++ +M D G+ P SYN LM CK M+ +AK + ++
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389
Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
NG P+A T+ ++ C G D A + +E + + +P+ T +L+ L K +I E
Sbjct: 390 NGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE 449
Query: 361 AKGVIRTIKKK 371
A+ ++R + +K
Sbjct: 450 AEELLRKMNEK 460
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 20/278 (7%)
Query: 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI-RSYGQAGMFDHAMRTFD 121
Y ++ + L K R S+ E L+ N+ + CN+I +G D A+
Sbjct: 432 YTCNILLHSLWKMGRISEAEELLRKM-NEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVK 490
Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181
M G+ L + L D+ + N PD I+Y LL C +
Sbjct: 491 GMRVHGSA-------------ALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241
G +A L EM + ++ +V Y ++ KQG A R+ +MEKKG + Y
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597
Query: 242 NVRITNTYGGDPERLKE---LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
N I G ++ E L+DEM++ G+ P+ +YN + C+ E +++A + + +
Sbjct: 598 NSLILGL--GIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEM 655
Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336
+ +PN +F+ I C +FD A +VF+ +V +
Sbjct: 656 MQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSI 693
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 27/332 (8%)
Query: 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF 120
S Y+ ++ + L K SD +T++ K + L+ Y G D A
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Query: 121 DQMDELGTPRSVISFNALLFACTR-SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179
+M + + N LL + + R+ + +L K Y L D ++ +++ C
Sbjct: 420 QEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL--DTVTCNIIVDGLC 477
Query: 180 DSGSSDKALELLNEMENKGVEVT-----------------------TVTYTTVLNCLYKQ 216
SG DKA+E++ M G +TY+T+LN L K
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISY 275
G EA+ L++EM + + D AYN+ I + G ++ +M G +Y
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597
Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335
N L+ + E + + ++E G SPN T+ T I +LC + A + E +
Sbjct: 598 NSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQ 657
Query: 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
+ P+ + K L+E K A+ V T
Sbjct: 658 KNIAPNVFSFKYLIEAFCKVPDFDMAQEVFET 689
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 52/191 (27%)
Query: 120 FDQMDELGTPRSVISFN-ALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178
D+M E G ++ ++N A+ + C ++ D +L DE+ +K N++P+ S+ L+++
Sbjct: 617 MDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLL-DEMMQK-NIAPNVFSFKYLIEAF 674
Query: 179 CD----------------------------------SGSSDKALELLNEMENKGVEVTTV 204
C +G KA ELL + ++G E+ T
Sbjct: 675 CKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTF 734
Query: 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMR 264
Y ++ L K+ E A + +M +G YG DP L +ID +
Sbjct: 735 LYKDLVESLCKKDELEVASGILHKMIDRG---------------YGFDPAALMPVIDGLG 779
Query: 265 DAGLKPDTISY 275
G K + S+
Sbjct: 780 KMGNKKEANSF 790
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 168/344 (48%), Gaps = 13/344 (3%)
Query: 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLI 85
IS A S ++ E DP LDI++ S+ + + + L + K+F ++ ++
Sbjct: 54 ISHESAVSLMKRERDPQGVLDIFNKASQQKGFN-HNNATYSVLLDNLVRHKKFLAVDAIL 112
Query: 86 ESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145
K + QE NL+R + ++ + D M F+ + + + S NA+ + +
Sbjct: 113 HQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKP--SLNAI--STCLN 168
Query: 146 RLYDKVPILFDE---IPKKYNLS--PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE 200
L D + + K+NL P+ + +L+K HC +G + A ++ EM+ G+
Sbjct: 169 LLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGIS 228
Query: 201 V-TTVTYTTVLNCLYKQGNAEEAERLWSEM-EKKGVDLDVAAYNVRITN-TYGGDPERLK 257
++TY+T+++CL+ ++EA L+ +M K+G+ D +NV I G+ ER K
Sbjct: 229 YPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAK 288
Query: 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHL 317
+++D M+ G P+ +Y+ LM +CK + EAK+ ++ +++ G + + T +
Sbjct: 289 KILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCF 348
Query: 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
C +G D+A K+ E D T +++ GL + + +EA
Sbjct: 349 CRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEA 392
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 2/239 (0%)
Query: 121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180
D + + G ++FN ++ R+ ++ + D KK +P+ +Y L+ C
Sbjct: 257 DMISKEGISPDPVTFNVMINGFCRAGEVERAKKILD-FMKKNGCNPNVYNYSALMNGFCK 315
Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
G +A + +E++ G+++ TV YTT++NC + G +EA +L EM+ D
Sbjct: 316 VGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLT 375
Query: 241 YNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299
YNV + + G E +++D+ G+ + SY ++ C N +++A K +
Sbjct: 376 YNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMS 435
Query: 300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
E G P+ T+ + LC SG + +V + + IP + +VE + K++K+
Sbjct: 436 ERGIWPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKL 494
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 14/240 (5%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGT--PRSVISFNAL---LFACTRSRLYDKVPILFDE 157
L++ + + G + A ++M G P S I+++ L LFA +RS+ + LF++
Sbjct: 202 LVKHHCKNGDINFAFLVVEEMKRSGISYPNS-ITYSTLMDCLFAHSRSK---EAVELFED 257
Query: 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217
+ K +SPD +++ +++ C +G ++A ++L+ M+ G Y+ ++N K G
Sbjct: 258 MISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVG 317
Query: 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNTY--GGDPERLKELIDEMRDAGLKPDTISY 275
+EA++ + E++K G+ LD Y + N + G+ + +L+ EM+ + + DT++Y
Sbjct: 318 KIQEAKQTFDEVKKTGLKLDTVGYTT-LMNCFCRNGETDEAMKLLGEMKASRCRADTLTY 376
Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335
N ++ +EA ++ + G N ++R + LC +G +KA K SVM
Sbjct: 377 NVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFL--SVM 434
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
L+ + + G A +TFD++ + G + + L+ R+ D+ L E+ K
Sbjct: 309 LMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEM-KAS 367
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
D ++Y ++L+ G S++AL++L++ ++GV + +Y +LN L G E+A
Sbjct: 368 RCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKA 427
Query: 223 ERLWSEMEKKGVDLDVAAYN---VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
+ S M ++G+ A +N VR+ + G ++ LI +R GL P S+ ++
Sbjct: 428 VKFLSVMSERGIWPHHATWNELVVRLCES-GYTEIGVRVLIGFLR-IGLIPGPKSWGAVV 485
Query: 280 TCYCK 284
CK
Sbjct: 486 ESICK 490
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 5/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI + + A+ +M +LG S+++F +LL C +R+ D ++ +
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y P+ + Y L+ C +G + ALELLNEME KG+ VTY T+L L G +
Sbjct: 172 Y--EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229
Query: 222 AERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A R+ +M K+ ++ DV + I G+ + +EL EM + + P+ ++YN ++
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
C + + +AKK ++ + GC PN T+ T I C D+ K+F+
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNA 349
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVL 377
D T L+ G + K++ A + + ++ P+++
Sbjct: 350 DIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDII 387
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 3/267 (1%)
Query: 113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYG 172
F+ A F +M S++ F LL A R Y+ V I F + + Y +S D S+
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETV-IYFSQKMELYGISHDLYSFT 110
Query: 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232
+L+ C AL +L +M G E + VT+ ++L+ +A L M K
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170
Query: 233 GVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
G + +V YN I G+ EL++EM GL D ++YN L+T C + +A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351
++ + + +P+ TF I GN D+A +++KE + P+ T ++ G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290
Query: 352 LVKKKKIKEAKGVIRTIKKK-FPPNVL 377
L ++ +AK + K PNV+
Sbjct: 291 LCMHGRLYDAKKTFDLMASKGCFPNVV 317
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI + G + A+ ++M++ G V+++N LL C R D +L D + +
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
N PD +++ L+ G+ D+A EL EM V+ VTY +++N L G +
Sbjct: 242 IN--PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN--TYGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
A++ + M KG +V YN I+ + E +K L M G D +YN L+
Sbjct: 300 AKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMK-LFQRMSCEGFNADIFTYNTLI 358
Query: 280 TCYCKNEMMDEAKKVY-------------------EGLEENGCSPNA------------- 307
YC+ + A ++ GL NG +A
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKY 418
Query: 308 ---TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV 364
+ I+ LC + +KA+++F + PD T +++ GL K +EA +
Sbjct: 419 IGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADEL 478
Query: 365 IRTIKKK 371
IR +K++
Sbjct: 479 IRRMKEE 485
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 4/209 (1%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
++I G A +TFD M G +V+++N L+ + R+ D+ LF + +
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ D +Y L+ +C G AL++ M ++ V +T+ +L+ L G E
Sbjct: 346 -GFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMT 280
A + +M + + + AYN+ I D E+ EL + G+KPD +Y ++
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464
Query: 281 CYCKNEMMDEAKKVYEGLEENG--CSPNA 307
CKN EA ++ ++E G C NA
Sbjct: 465 GLCKNGPRREADELIRRMKEEGIICQMNA 493
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 3/270 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI Q+G FD A++ FD+M + + ++F L+ C SR+ + + + D + K
Sbjct: 158 LIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDML-KV 216
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y + P Y L+K+ C G A +L +E ++V Y+T+++ L K G + E
Sbjct: 217 YGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNE 276
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
+ EM +KG D YNV I D E ++DEM + GLKPD ISYN ++
Sbjct: 277 VSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILG 336
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
+ + + +EA ++E + GCSP+ ++R LC F++A + E + P
Sbjct: 337 VFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKP 396
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
+ ++ ++ L + K++ VI ++ +
Sbjct: 397 RRDRLEGFLQKLCESGKLEILSKVISSLHR 426
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 162/351 (46%), Gaps = 15/351 (4%)
Query: 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS-RYA---QDLTVRRLAKSK 76
+ S+S + S LR E DP A+ ++ + +P RY+ D+ + +L SK
Sbjct: 2 SAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSK 61
Query: 77 RFSDIETLIESHKNDPKIT-QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF 135
F +++ ++ K D +I E CN+I +G+ + A+ FD+M + R+V S
Sbjct: 62 MFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSL 121
Query: 136 NALLFACTRSRLYDKVPILF---DEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN 192
N+LL A + +K+ DE K PD +Y +L+ SG D AL+L +
Sbjct: 122 NSLLSALLKCGELEKMKERLSSIDEFGK-----PDACTYNILIHGCSQSGCFDDALKLFD 176
Query: 193 EMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-KGVDLDVAAYNVRITNTYG- 250
EM K V+ T VT+ T+++ L K +EA ++ +M K GV V Y I
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236
Query: 251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF 310
G+ +L DE + +K D Y+ L++ K +E + E + E GC P+ T+
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTY 296
Query: 311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
I C + + A +V E V PD + +++ + KK +EA
Sbjct: 297 NVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEA 347
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 4/261 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL-FACTRSRLYDKVPILFDEIPKK 161
++RS G + A + M G SV++FN L+ F C + L + IL +++P+
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL-EKMPQ- 372
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ P+ +SY LL C D+A+E L M ++G VTY T+L L K G E+
Sbjct: 373 HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVED 432
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A + +++ KG + YN I G + +L+DEMR LKPDTI+Y+ L+
Sbjct: 433 AVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVG 492
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
+ +DEA K + E G PNA TF + + LC S D+A + P
Sbjct: 493 GLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKP 552
Query: 341 DFNTVKLLVEGLVKKKKIKEA 361
+ + +L+EGL + KEA
Sbjct: 553 NETSYTILIEGLAYEGMAKEA 573
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 2/270 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
++RS +G AM D+M + VI++ L+ A R L DE+ +
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDR 268
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+PD ++Y +L+ C G D+A++ LN+M + G + +T+ +L + G +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
E+L ++M +KG V +N+ I G R +++++M G +P+++SYN L+
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
+CK + MD A + E + GC P+ T+ T + LC G + A ++ + P
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
T +++GL K K +A ++ ++ K
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 159/332 (47%), Gaps = 12/332 (3%)
Query: 71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR 130
RL K+++ + I ++E P + + I Y +AG ++A+ D+M
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVM---ISGYCKAGEINNALSVLDRMS---VSP 202
Query: 131 SVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALE 189
V+++N +L + C +L + +L D + ++ + PD I+Y +L+++ C A++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVL-DRMLQR-DCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 190 LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTY 249
LL+EM ++G VTY ++N + K+G +EA + ++M G +V +N+ + +
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 250 G-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308
G ++L+ +M G P +++N L+ C+ ++ A + E + ++GC PN+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368
++ ++ C D+A + + V PD T ++ L K K+++A ++ +
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 369 KKKFPPNVLRAWKKVEEELGLVPAPAVGDGQK 400
K VL + V + GL A G K
Sbjct: 441 SSKGCSPVLITYNTVID--GLAKAGKTGKAIK 470
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 123/280 (43%), Gaps = 10/280 (3%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPK 160
N +R + G + + + M G +I L+ C + IL EI +
Sbjct: 107 NHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKIL--EILE 164
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
PD I+Y +++ +C +G + AL +L+ M V VTY T+L L G +
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTY--GGDPERLKELIDEMRDAGLKPDTISYNFL 278
+A + M ++ DV Y + I T G +K L+DEMRD G PD ++YN L
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK-LLDEMRDRGCTPDVVTYNVL 280
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ CK +DEA K + +GC PN T + +C +G + A K+ + +
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTI-KKKFPPNVL 377
P T +L+ L +K + A ++ + + PN L
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 4/202 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + D A+ ++M G ++++N +L A C ++ D V IL +++ K
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL-NQLSSK 443
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
SP I+Y ++ +G + KA++LL+EM K ++ T+TY++++ L ++G +E
Sbjct: 444 -GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 222 AERLWSEMEKKGVDLDVAAYN-VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A + + E E+ G+ + +N + + +R + + M + G KP+ SY L+
Sbjct: 503 AIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Query: 281 CYCKNEMMDEAKKVYEGLEENG 302
M EA ++ L G
Sbjct: 563 GLAYEGMAKEALELLNELCNKG 584
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKS-KRFSDIETLIESHKNDPKITQEPYL 100
+ A++I + +S SPV Y + + LAK+ K I+ L E D K Y
Sbjct: 431 EDAVEILNQLSSKGCSPVLITY--NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY- 487
Query: 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160
+L+ + G D A++ F + + +G + ++FN+++ +SR D+ I F
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRA-IDFLVFMI 546
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV 199
P++ SY +L++ G + +ALELLNE+ NKG+
Sbjct: 547 NRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I +AG A++ D+M I++++L+ +R D+ F E ++
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF-ERM 513
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ P+ +++ ++ C S +D+A++ L M N+G + +YT ++ L +G A+EA
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 223 ERLWSEMEKKGV 234
L +E+ KG+
Sbjct: 574 LELLNELCNKGL 585
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 154/302 (50%), Gaps = 13/302 (4%)
Query: 67 LTVRRLAKS-KRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125
L V RL + + F ++E+L K T Y+ I YG++G A+ TF++M
Sbjct: 409 LRVHRLDDALELFGNMESL------GVKPTAYTYIV-FIDYYGKSGDSVSALETFEKMKT 461
Query: 126 LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185
G ++++ NA L++ ++ + +F + K L PD ++Y +++K + G D
Sbjct: 462 KGIAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEID 520
Query: 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245
+A++LL+EM G E + +++N LYK +EA +++ M++ + V YN +
Sbjct: 521 EAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLL 580
Query: 246 TNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304
G + EL + M G P+TI++N L C CKN+ + A K+ + + GC
Sbjct: 581 AGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCV 640
Query: 305 PNATTFRTWIYHLCGSGNFDKAYKVFKE-SVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363
P+ T+ T I+ L +G +A F + +V+ PDF T+ L+ G+VK I++A
Sbjct: 641 PDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVY--PDFVTLCTLLPGVVKASLIEDAYK 698
Query: 364 VI 365
+I
Sbjct: 699 II 700
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 153/368 (41%), Gaps = 44/368 (11%)
Query: 71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR 130
R + ++ ++ + D + L+ + +AG F A T D M + G
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 131 SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALEL 190
++ ++N L+ R D LF + + + P +Y + + + SG S ALE
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455
Query: 191 LNEMENKGVEVT-----------------------------------TVTYTTVLNCLYK 215
+M+ KG+ +VTY ++ C K
Sbjct: 456 FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515
Query: 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRDAGLKPDT 272
G +EA +L SEM + G + DV N I Y D R+ E + M++ LKP
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD--RVDEAWKMFMRMKEMKLKPTV 573
Query: 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
++YN L+ KN + EA +++EG+ + GC PN TF T LC + A K+ +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 333 SVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392
+ + +PD T ++ GLVK ++KEA +KK P+ + + G+V A
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLP---GVVKA 690
Query: 393 PAVGDGQK 400
+ D K
Sbjct: 691 SLIEDAYK 698
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 10/252 (3%)
Query: 103 LIRSYGQAGMFDHAMRTF-DQMDELGTPRSVISFNALLFACTRS-RLYDKVPILFDEIPK 160
+I +AG D A+ + D M + + ++ L+ ++S RLY+ + E
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF--EGML 918
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
Y P+ Y +L+ +G +D A L M +GV TY+ +++CL G +
Sbjct: 919 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVD 978
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRDA-GLKPDTISYN 276
E + E+++ G++ DV YN+ I G RL+E L +EM+ + G+ PD +YN
Sbjct: 979 EGLHYFKELKESGLNPDVVCYNLIINGL--GKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336
L+ M++EA K+Y ++ G PN TF I SG + AY V++ V
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTG 1096
Query: 337 HKIPDFNTVKLL 348
P+ T + L
Sbjct: 1097 GFSPNTGTYEQL 1108
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 3/276 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
L+ +YG++G D + +M + I+ N ++ ++ D L+ ++
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ SP +YG L+ SG +A +L M + G Y ++N K G A+ A
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
L+ M K+GV D+ Y+V + G + E++++GL PD + YN ++
Sbjct: 946 CALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Query: 282 YCKNEMMDEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
K+ ++EA ++ ++ + G +P+ T+ + I +L +G ++A K++ E P
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRT-IKKKFPPN 375
+ T L+ G K + A V +T + F PN
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 2/260 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+ +S G A +M E G + S+N L+ +SR + ++ + +
Sbjct: 159 IFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILE- 217
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
P +Y L+ D + LL EME G++ T+T + L + G EA
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 277
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ M+ +G DV Y V I + KE+ ++M+ KPD ++Y L+
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
+ N +D K+ + +E++G P+ TF + LC +GNF +A+ +P+
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397
Query: 342 FNTVKLLVEGLVKKKKIKEA 361
+T L+ GL++ ++ +A
Sbjct: 398 LHTYNTLICGLLRVHRLDDA 417
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 21/286 (7%)
Query: 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG-------------- 108
Y DL +R+ K + + T+ +S + Q PY +R +G
Sbjct: 139 YVFDLMQKRIIKRDTNTYL-TIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHL 197
Query: 109 --QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP 166
++ AM + +M G S+ ++++L+ + R D V L E+ + L P
Sbjct: 198 LLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETLGLKP 256
Query: 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226
+ ++ + ++ +G ++A E+L M+++G VTYT +++ L + A+ ++
Sbjct: 257 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 316
Query: 227 SEMEKKGVDLDVAAYNVRITNTYGG--DPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284
+M+ D Y + + + + D + +K+ EM G PD +++ L+ CK
Sbjct: 317 EKMKTGRHKPDRVTY-ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVF 330
EA + + + G PN T+ T I L D A ++F
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 142/371 (38%), Gaps = 47/371 (12%)
Query: 40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99
D AL+ + + +P + A + ++ LAK+ R + + + K+ +
Sbjct: 448 DSVSALETFEKMKTKGIAP--NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVT 505
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
+++ Y + G D A++ +M E G VI N+L+ ++ D+ +F +
Sbjct: 506 YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRM- 564
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
K+ L P ++Y LL +G +A+EL M KG T+T+ T+ +CL K
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGG-------------------DPERLKELI 260
A ++ +M G DV YN I D L L+
Sbjct: 625 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL 684
Query: 261 DEMRDAGLKPDT--ISYNFLMTC---------------YCKNEMMDEAKKVYEGLEENG- 302
+ A L D I NFL C +D A E L NG
Sbjct: 685 PGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGI 744
Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVF----KESVMVHKIPDFNTVKLLVEGLVKKKKI 358
C + I + C N A +F K+ + K+P +N LL+ GL++ I
Sbjct: 745 CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYN---LLIGGLLEADMI 801
Query: 359 KEAKGVIRTIK 369
+ A+ V +K
Sbjct: 802 EIAQDVFLQVK 812
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 15/261 (5%)
Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI----LFDEIPKKYNLSP 166
G AM F QM +L P V L S + D I L++ + NL
Sbjct: 657 GQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFW 716
Query: 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKG--VEVTTVTYTTVLNCLYKQGNAEEAER 224
+ + +L ++ D+ S + N + G + V + Y+ K N A
Sbjct: 717 EDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSC------KHNNVSGART 770
Query: 225 LWSEMEKK-GVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCY 282
L+ + K GV + YN+ I D E +++ +++ G PD +YNFL+ Y
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830
Query: 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI-PD 341
K+ +DE ++Y+ + + C N T I L +GN D A ++ + + P
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 890
Query: 342 FNTVKLLVEGLVKKKKIKEAK 362
T L++GL K ++ EAK
Sbjct: 891 ACTYGPLIDGLSKSGRLYEAK 911
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 148/357 (41%), Gaps = 17/357 (4%)
Query: 10 LCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR--YAQDL 67
LC+A+ G + + VS K+K R ++ + K +A + SR + +
Sbjct: 5 LCSASLC-GDISVGDACLVSNIKAKCRD--------NLVTGGLKFHALKIGSRKKHWRRK 55
Query: 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM-DEL 126
++R S + SD + + P ++ + ++S+ D + F + L
Sbjct: 56 SMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDT---DSSFSYFKSVAGNL 112
Query: 127 GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186
+ + N +L A +++ +FD + K+ + D +Y + KS G +
Sbjct: 113 NLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRI-IKRDTNTYLTIFKSLSVKGGLKQ 171
Query: 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN-VRI 245
A L +M G + +Y +++ L K EA ++ M +G + Y+ + +
Sbjct: 172 APYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMV 231
Query: 246 TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
D + + L+ EM GLKP+ ++ + + ++EA ++ + +++ GC P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
+ T+ I LC + D A +VF++ PD T L++ + + K
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMD 124
+L + L KS R + L K IT + Y N LI + G AGM + A + ++++
Sbjct: 1000 NLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQ 1059
Query: 125 ELGTPRSVISFNALL 139
G +V +FNAL+
Sbjct: 1060 RAGLEPNVFTFNALI 1074
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 40/313 (12%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI G A+ D+M E+G ++I+ NAL+ C ++ D V +L D + +
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV-LLIDRMVET 206
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
P++++YG +LK C SG + A+ELL +ME + +++ V Y+ +++ L K G+ +
Sbjct: 207 -GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGG-------------------DPERLKELID 261
A L++EME KG D+ Y I Y G D LID
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325
Query: 262 ----------------EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
EM G+ PDT++Y L+ +CK +D+A + + + GC P
Sbjct: 326 CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
N TF I C + D ++F++ + + D T L++G + K++ AK +
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445
Query: 366 R-TIKKKFPPNVL 377
+ + ++ P+++
Sbjct: 446 QEMVSRRVRPDIV 458
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 2/252 (0%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI + + D A D M G ++ +FN L+ ++ L D LF ++ +
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ D ++Y L++ C+ G + A EL EM ++ V V+Y +L+ L G E+
Sbjct: 417 -GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMT 280
A ++ ++EK ++LD+ YN+ I + +L + G+KPD +YN ++
Sbjct: 476 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK + EA ++ +EE+G SPN T+ I G G+ K+ K+ +E
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSV 595
Query: 341 DFNTVKLLVEGL 352
D +TVK++V+ L
Sbjct: 596 DASTVKMVVDML 607
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 2/269 (0%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LIR + AG +D + M + V++F+AL+ + + L E+ ++
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR- 346
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+SPD ++Y L+ C DKA +L+ M +KG T+ ++N K ++
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
L+ +M +GV D YN I G E KEL EM ++PD +SY L+
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
C N ++A +++E +E++ + + I+ +C + D A+ +F + PD
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
T +++ GL KK + EA + R +++
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEE 555
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 14/385 (3%)
Query: 2 TSLRHIRRLCTATTAAGSSTTASSISVSKAK----SKLRS---EFDPDKALDIYSSVSKH 54
T L L TA + SS+S K K +LRS + D A+D++ +++
Sbjct: 7 TRLLETGTLRTALFLSCYGRVFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRS 66
Query: 55 YASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114
P +++ +V +A++K++ + L + + L +I +
Sbjct: 67 RPRPRLIDFSRLFSV--VARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLS 124
Query: 115 HAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173
A ++ +LG ++F+ L+ C R+ + + ++ + + P I+
Sbjct: 125 LAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK--PTLITLNA 182
Query: 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233
L+ C +G A+ L++ M G + VTY VL + K G A L +ME++
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK 242
Query: 234 VDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK 292
+ LD Y++ I G + L +EM G K D I Y L+ +C D+
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352
K+ + + +P+ F I G +A ++ KE + PD T L++G
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 353 VKKKKIKEAKGVI-RTIKKKFPPNV 376
K+ ++ +A ++ + K PN+
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNI 387
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 163/354 (46%), Gaps = 10/354 (2%)
Query: 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDI 81
+ S +VS LR ++AL++ V SP + + + + L K ++F +
Sbjct: 329 SPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSP--NLFVYNALIDSLCKGRKFHEA 386
Query: 82 ETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA 141
E L + + LI + + G D A+ +M + G SV +N+L+
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Query: 142 -CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE 200
C + + + I KK L P ++Y L+ +C G +KAL L +EM KG+
Sbjct: 447 HCKFGDISAAEGFMAEMINKK--LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIA 504
Query: 201 VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKEL 259
+ T+TT+L+ L++ G +A +L++EM + V + YNV I GD + E
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564
Query: 260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319
+ EM + G+ PDT SY L+ C EAK +GL + C N + ++ C
Sbjct: 565 LKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624
Query: 320 SGNFDKAYKVFKESVMVHKIPDFNTV--KLLVEGLVKKKKIKEAKGVIRTIKKK 371
G ++A V +E MV + D + V +L++G +K K K G+++ + +
Sbjct: 625 EGKLEEALSVCQE--MVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDR 676
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 41/304 (13%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+L+ Y G + A+R + +M G S+ +F LL R+ L LF+E+ +
Sbjct: 477 SLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAE- 535
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV---------------------- 199
+N+ P++++Y ++++ +C+ G KA E L EM KG+
Sbjct: 536 WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASE 595
Query: 200 -------------EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246
E+ + YT +L+ ++G EEA + EM ++GVDLD+ Y V I
Sbjct: 596 AKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLID 655
Query: 247 NTYGG-DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
+ D + L+ EM D GLKPD + Y ++ K EA +++ + GC P
Sbjct: 656 GSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVP 715
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT----VKLLVEGLVKKKKIKEA 361
N T+ I LC +G ++A + + V +P+ T + +L +G V +K E
Sbjct: 716 NEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVEL 775
Query: 362 KGVI 365
I
Sbjct: 776 HNAI 779
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 140/344 (40%), Gaps = 41/344 (11%)
Query: 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES-HKNDPKITQ 96
E D KA + +++ P Y+ + L + + S+ + ++ HK + ++ +
Sbjct: 555 EGDMSKAFEFLKEMTEKGIVP--DTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNE 612
Query: 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156
Y L+ + + G + A+ +M + G ++ + L+ + + L
Sbjct: 613 ICYT-GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLK 671
Query: 157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216
E+ + L PD + Y ++ + +G +A + + M N+G VTYT V+N L K
Sbjct: 672 EMHDR-GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730
Query: 217 GNAEEAERLWSEMEK-----------------------------------KGVDLDVAAY 241
G EAE L S+M+ KG+ + A Y
Sbjct: 731 GFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATY 790
Query: 242 NVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
N+ I G E ELI M G+ PD I+Y ++ C+ + +A +++ + E
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850
Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344
G P+ + T I+ C +G KA ++ E + IP+ T
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 4/262 (1%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPK 160
+IRS + A M+ G +++ +N L+ C + ++++ V I D K
Sbjct: 232 GVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGK 291
Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
+L PD ++Y L+ C + LE+++EM + ++++ L K+G E
Sbjct: 292 --DLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIE 349
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI-DEMRDAGLKPDTISYNFLM 279
EA L + GV ++ YN I + G EL+ D M GL+P+ ++Y+ L+
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILI 409
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
+C+ +D A + + G + + + I C G+ A E +
Sbjct: 410 DMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLE 469
Query: 340 PDFNTVKLLVEGLVKKKKIKEA 361
P T L+ G K KI +A
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKA 491
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 10/216 (4%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
++I + + G F A +D M G + +++ A++ ++ ++ +L ++
Sbjct: 687 SMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPV 746
Query: 162 YNLSPDKISYG----LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217
++ P++++YG +L K D KA+EL N + KG+ T TY ++ +QG
Sbjct: 747 SSV-PNQVTYGCFLDILTKGEVDM---QKAVELHNAIL-KGLLANTATYNMLIRGFCRQG 801
Query: 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYN 276
EEA L + M GV D Y I D ++ EL + M + G++PD ++YN
Sbjct: 802 RIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYN 861
Query: 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT 312
L+ C M +A ++ + G PN T RT
Sbjct: 862 TLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 135 FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194
F+ L+ RSR ++F + K +L P+ + LL A+EL N+M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE 254
+ G+ YT V+ L + + A+ + + ME G D+++ YNV
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNV----------- 267
Query: 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314
LID + CK + + EA + + L P+ T+ T +
Sbjct: 268 ----LIDGL-------------------CKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLV 304
Query: 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFP 373
Y LC F+ ++ E + + P V LVEGL K+ KI+EA ++ R +
Sbjct: 305 YGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVS 364
Query: 374 PNVL 377
PN+
Sbjct: 365 PNLF 368
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 8/276 (2%)
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
L +L+ + A+ DQM E+G ++F L+ + + L + +
Sbjct: 138 LNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMV 197
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
K PD ++YG ++ C G D AL LLN+ME +E V Y+TV++ L K +
Sbjct: 198 VK-GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRIT--NTYG--GDPERLKELIDEMRDAGLKPDTISY 275
++A L++EM+ KG+ DV Y+ I+ YG D R L+ +M + + P+ +++
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR---LLSDMLERKINPNVVTF 313
Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335
N L+ + K + EA+K+++ + + PN T+ + I C D+A ++F V
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373
Query: 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
+PD T L+ G K KK+ + + R + ++
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 139/287 (48%), Gaps = 6/287 (2%)
Query: 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173
D A+ ++M++ V+ ++ ++ + + R D LF E+ K + PD +Y
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK-GIRPDVFTYSS 280
Query: 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233
L+ C+ G A LL++M + + VT+ ++++ K+G EAE+L+ EM ++
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 234 VDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK 292
+D ++ YN I D + +++ M PD ++YN L+ +CK + + +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352
+++ + G N T+ T I+ + + D A VFK+ V P+ T L++GL
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Query: 353 VKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVEEELGLVPAPAVGDG 398
K K+++A V ++K K P++ + + E G+ A V DG
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDI-YTYNIMSE--GMCKAGKVEDG 504
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 5/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + FD + ++M+ LG ++ ++N ++ C RS+L + IL +
Sbjct: 71 LLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLG 130
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y P ++ LL C +A+ L+++M G + TVT+TT+++ L++ A E
Sbjct: 131 Y--GPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASE 188
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L M KG D+ Y I G+P+ L+++M ++ D + Y+ ++
Sbjct: 189 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK +D+A ++ ++ G P+ T+ + I LC G + A ++ + + P
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINP 308
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVL 377
+ T L++ K+ K+ EA+ + I++ PN++
Sbjct: 309 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIV 346
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 149/338 (44%), Gaps = 10/338 (2%)
Query: 40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND---PKITQ 96
+PD AL++ + + K Y+ + L K + D L N P +
Sbjct: 220 EPDLALNLLNKMEKGKIEADVVIYST--VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277
Query: 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156
L + + +YG+ + A R M E +V++FN+L+ A + + LFD
Sbjct: 278 YSSLISCLCNYGR---WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216
E+ ++ ++ P+ ++Y L+ C D+A ++ M +K VTY T++N K
Sbjct: 335 EMIQR-SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISY 275
+ L+ +M ++G+ + Y I + D + + + +M G+ P+ ++Y
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335
N L+ CKN +++A V+E L+++ P+ T+ +C +G + + +F +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373
PD ++ G KK +EA + +K+ P
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 140/313 (44%), Gaps = 47/313 (15%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES---HKNDPKITQEP 98
D AL++++ + P Y+ ++ L R+SD L+ K +P +
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISC--LCNYGRWSDASRLLSDMLERKINPNVVT-- 312
Query: 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDE 157
+LI ++ + G A + FD+M + +++++N+L+ C RL D+ +F
Sbjct: 313 -FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL-DEAQQIFTL 370
Query: 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217
+ K L PD ++Y L+ C + +EL +M +G+ TVTYTT+++ ++
Sbjct: 371 MVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Query: 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITN---------------------------TY- 249
+ + A+ ++ +M GV ++ YN + TY
Sbjct: 430 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489
Query: 250 --------GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301
G E +L + G+KPD I+YN +++ +CK + +EA ++ ++E+
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549
Query: 302 GCSPNATTFRTWI 314
G P++ T+ T I
Sbjct: 550 GPLPDSGTYNTLI 562
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 2/177 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI + QA D+A F QM G +++++N LL ++ +K ++F E +K
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQKS 479
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ PD +Y ++ + C +G + +L + KGV+ + Y T+++ K+G EEA
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFL 278
L+ +M++ G D YN I + GD ELI EMR D +Y +
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLV 596
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 7/233 (3%)
Query: 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT 208
D+ LF E+ K P + + LL + D + +ME GV TY
Sbjct: 47 DEAVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 209 VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRD 265
++NCL ++ A + +M K G + N + G+ R+ E L+D+M +
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN--RISEAVALVDQMVE 163
Query: 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK 325
G +PDT+++ L+ ++ EA + E + GC P+ T+ I LC G D
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
A + + D +++ L K + + +A + + K P+V
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVF 276
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%)
Query: 93 KITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
K+ EP L +L+ Y + A+ DQM G + ++FN L+
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203
Query: 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209
+ L D + K PD ++YG+++ C G +D A LLN+ME +E + Y T+
Sbjct: 204 EAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262
Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT--NTYG--GDPERLKELIDEMRD 265
++ L K + ++A L+ EME KG+ +V Y+ I+ YG D R L+ +M +
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR---LLSDMIE 319
Query: 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK 325
+ PD +++ L+ + K + EA+K+Y+ + + P+ T+ + I C D+
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
A ++F+ V H PD T L++G K K+++E V R + ++
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 425
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 136/278 (48%), Gaps = 5/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + FD + +QM LG P + +++ L+ C RS+L + +L +
Sbjct: 87 LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y P+ ++ LL +C S +A+ L+++M G + TVT+ T+++ L+ A E
Sbjct: 147 Y--EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 204
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L M KG D+ Y V + GD + L+++M L+P + YN ++
Sbjct: 205 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK + MD+A +++ +E G PN T+ + I LC G + A ++ + + P
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVL 377
D T L++ VK+ K+ EA+ + +K+ P+++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 138/287 (48%), Gaps = 6/287 (2%)
Query: 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173
D A ++M++ V+ +N ++ + + D LF E+ K + P+ ++Y
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSS 296
Query: 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233
L+ C+ G A LL++M + + T++ +++ K+G EAE+L+ EM K+
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
Query: 234 VDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK 292
+D + Y+ I D + K++ + M PD ++YN L+ +CK + ++E
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352
+V+ + + G N T+ I L +G+ D A ++FKE V P+ T L++GL
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 353 VKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVEEELGLVPAPAVGDG 398
K K+++A V +++ K P + +E G+ A V DG
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE---GMCKAGKVEDG 520
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 150/335 (44%), Gaps = 10/335 (2%)
Query: 40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETL---IESHKNDPKITQ 96
D D A ++ + + + P Y + + L K K D L +E+ P +
Sbjct: 236 DTDLAFNLLNKMEQGKLEPGVLIY--NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293
Query: 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156
L + + +YG+ + A R M E V +F+AL+ A + + L+D
Sbjct: 294 YSSLISCLCNYGR---WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216
E+ K+ ++ P ++Y L+ C D+A ++ M +K VTY T++ K
Sbjct: 351 EMVKR-SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKY 409
Query: 217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISY 275
EE ++ EM ++G+ + YN+ I + GD + +E+ EM G+ P+ ++Y
Sbjct: 410 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTY 469
Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335
N L+ CKN +++A V+E L+ + P T+ I +C +G + + +F +
Sbjct: 470 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529
Query: 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
PD ++ G +K +EA + + +K+
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI+ QAG D A F +M G P +++++N LL ++ +K ++F E ++
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQRS 495
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ P +Y ++++ C +G + +L + KGV+ V Y T+++ ++G+ EEA
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPD 271
+ L+ EM++ G + YN I GD E ELI EMR G D
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 7/233 (3%)
Query: 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT 208
D LF E+ K P I + LL + D + L +M+N G+ TY+
Sbjct: 63 DDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 209 VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRD 265
++NC ++ A + +M K G + ++ + + N Y +R+ E L+D+M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS-SLLNGY-CHSKRISEAVALVDQMFV 179
Query: 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK 325
G +P+T+++N L+ + EA + + + GC P+ T+ + LC G+ D
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
A+ + + P +++GL K K + +A + + ++ K PNV+
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 172/397 (43%), Gaps = 66/397 (16%)
Query: 43 KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102
+AL +++ + +H +P Y + + K+ + ++ + E
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTS--LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + Q G + A R +M++ G SV+++NAL+ C ++ D + +L D K+
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED--MKE 443
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
LSPD +SY +L C S D+AL + EM KG++ T+TY++++ +Q +E
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTISYNFLM 279
A L+ EM + G+ D Y I N Y GD E+ +L +EM + G+ PD ++Y+ L+
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALI-NAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 280 T------------------------------------C--------------YCKNEMMD 289
C +C MM
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622
Query: 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349
EA +V+E + P+ T + I+ C +G+ KAY ++KE V + TV LV
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682
Query: 350 EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386
+ L K+ K+ E VI +VLR+ + E E
Sbjct: 683 KALHKEGKVNELNSVI--------VHVLRSCELSEAE 711
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 141/278 (50%), Gaps = 4/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS-RLYDKVPILFDEIPKK 161
+++SY + + D A+ G V+S+NA+L A RS R +F E+ +
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+SP+ +Y +L++ C +G+ D AL L ++ME KG VTY T+++ K ++
Sbjct: 200 -QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDD 258
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
+L M KG++ ++ +YNV I G + + ++ EM G D ++YN L+
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
YCK +A ++ + +G +P+ T+ + I+ +C +GN ++A + + + P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
+ T LV+G +K + EA V+R + F P+V+
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 10/341 (2%)
Query: 42 DKALDIYSSVSKHYASP--VSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99
DKAL I H P +S D T+R SKR + + +++ +
Sbjct: 151 DKALSIVHLAQAHGFMPGVLSYNAVLDATIR----SKRNISFAENVFKEMLESQVSPNVF 206
Query: 100 LCN-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEI 158
N LIR + AG D A+ FD+M+ G +V+++N L+ + R D L +
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 159 PKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN 218
K L P+ ISY +++ C G + +L EM +G + VTY T++ K+GN
Sbjct: 267 ALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 219 AEEAERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNF 277
+A + +EM + G+ V Y I + G+ R E +D+MR GL P+ +Y
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337
L+ + + M+EA +V + +NG SP+ T+ I C +G + A V ++
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIR-TIKKKFPPNVL 377
PD + ++ G + + EA V R ++K P+ +
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 8/267 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI+ Y + G F A+ +M G SVI++ +L+ + ++ ++ D++ +
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR- 374
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L P++ +Y L+ G ++A +L EM + G + VTY ++N G E+A
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN---TYGGDPE-RLKELIDEMRDAGLKPDTISYNFL 278
+ +M++KG+ DV +Y+ ++ +Y D R+K EM + G+KPDTI+Y+ L
Sbjct: 435 IAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR---EMVEKGIKPDTITYSSL 491
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ +C+ EA +YE + G P+ T+ I C G+ +KA ++ E V
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+PD T +L+ GL K+ + +EAK ++
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 3/212 (1%)
Query: 153 ILFDEIPKKYNLSPDKIS-YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN 211
++F + + Y+L S + L++KS+ DKAL +++ + G ++Y VL+
Sbjct: 118 LVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLD 177
Query: 212 CLYK-QGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLK 269
+ + N AE ++ EM + V +V YN+ I + G+ + L D+M G
Sbjct: 178 ATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCL 237
Query: 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329
P+ ++YN L+ YCK +D+ K+ + G PN ++ I LC G + V
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
E D T L++G K+ +A
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 132/251 (52%), Gaps = 2/251 (0%)
Query: 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175
A + FD+M E G +++++N L+ R ++ + D++ K ++P+ I+Y L+
Sbjct: 287 AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM-KSDGINPNLITYNTLI 345
Query: 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD 235
C G KAL L +++++G+ + VTY +++ ++G+ A ++ EME++G+
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405
Query: 236 LDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKV 294
Y + I T + E+ +L M + GL PD +Y+ L+ +C M+EA ++
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465
Query: 295 YEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK 354
++ + E C PN + T I C G+ +A K+ KE P+ + + ++E L K
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525
Query: 355 KKKIKEAKGVI 365
++K KEA+ ++
Sbjct: 526 ERKSKEAERLV 536
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 3/270 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I SY Q+ + ++ F++M + G FN LL S +++ F+E K
Sbjct: 100 IINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKV 159
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
L D S+G+L+K C++G +K+ +LL E+ G V YTT+++ K+G E+A
Sbjct: 160 VL--DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ L+ EM K G+ + Y V I + G ++ E+ ++M++ G+ P+ +YN +M
Sbjct: 218 KDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
CK+ +A +V++ + E G S N T+ T I LC ++A KV + P+
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPN 337
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
T L++G K+ +A + R +K +
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSR 367
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 141/325 (43%), Gaps = 37/325 (11%)
Query: 88 HKNDPKITQEPY-LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146
++N K+ + Y LI+ +AG + + ++ E G +V+ + L+ C +
Sbjct: 153 NENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212
Query: 147 LYDKVPILFDEIPK----------------------------------KYNLSPDKISYG 172
+K LF E+ K + + P+ +Y
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYN 272
Query: 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232
++ C G + A ++ +EM +GV VTY T++ L ++ EA ++ +M+
Sbjct: 273 CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD 332
Query: 233 GVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
G++ ++ YN I G G + L +++ GL P ++YN L++ +C+ A
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGA 392
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351
K+ + +EE G P+ T+ I S N +KA ++ + +PD +T +L+ G
Sbjct: 393 AKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 352 LVKKKKIKEAKGVIRT-IKKKFPPN 375
K ++ EA + ++ ++K PN
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPN 477
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Query: 113 FDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKKYNLSPDKISY 171
+ A + DQM G ++I++N L+ C +L + + D K LSP ++Y
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRD--LKSRGLSPSLVTY 376
Query: 172 GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231
+L+ C G + A +++ EME +G++ + VTYT +++ + N E+A +L ME+
Sbjct: 377 NILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEE 436
Query: 232 KGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDE 290
G+ DV Y+V I G L M + +P+ + YN ++ YCK
Sbjct: 437 LGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYR 496
Query: 291 AKKVYEGLEENGCSPNATTFRTWIYHLC 318
A K+ + +EE +PN ++R I LC
Sbjct: 497 ALKLLKEMEEKELAPNVASYRYMIEVLC 524
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 139/277 (50%), Gaps = 5/277 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI + G+ +++M E G ++ ++N ++ C R D + FDE+ ++
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV-FDEMRER 297
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+S + ++Y L+ C ++A +++++M++ G+ +TY T+++ G +
Sbjct: 298 -GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L +++ +G+ + YN+ ++ GD +++ EM + G+KP ++Y L+
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
+ +++ M++A ++ +EE G P+ T+ I+ C G ++A ++FK V + P
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTI-KKKFPPNV 376
+ ++ G K+ A +++ + +K+ PNV
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNV 513
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI ++ ++ + A++ M+ELG V +++ L+ C + ++ ++ LF + +K
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQM-NEASRLFKSMVEK 472
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
N P+++ Y ++ +C GSS +AL+LL EME K + +Y ++ L K+ ++E
Sbjct: 473 -NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKE 531
Query: 222 AERLWSEMEKKGVD 235
AERL +M G+D
Sbjct: 532 AERLVEKMIDSGID 545
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334
Y ++ Y +++ ++ + + + +NG P + F + + GS +F++ + F E+
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN- 155
Query: 335 MVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVIRTIKKKFPPNVL 377
+ D + +L++G + +I K +I + F PNV+
Sbjct: 156 KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVV 199
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 168/342 (49%), Gaps = 15/342 (4%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
++ALD+++ + + P + + L V +AK K+F + L + H ++ + Y C
Sbjct: 54 NEALDLFTHMVESRPLPSIIDFTKLLNV--IAKMKKFDVVINLCD-HLQIMGVSHDLYTC 110
Query: 102 NLIRS-YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIP 159
NL+ + + Q+ A +M +LG +++F +L+ C +R+ + + ++ +
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV- 169
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
+ + PD + Y ++ S C +G + AL L ++MEN G+ V YT+++N L G
Sbjct: 170 -EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRW 228
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERL--KELIDEMRDAGLKPDTISYNF 277
+A+ L M K+ + DV +N I + + + + L +EL +EM + P+ +Y
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALI-DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337
L+ +C +DEA++++ +E GC P+ + + I C D A K+F E M
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYE--MSQ 345
Query: 338 KIPDFNTVKL--LVEGLVKKKKIKEAKGVI-RTIKKKFPPNV 376
K NT+ L++G + K A+ V + + PPN+
Sbjct: 346 KGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNI 387
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 8/252 (3%)
Query: 132 VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELL 191
VI+FNAL+ A + + L++E+ + +++P+ +Y L+ C G D+A ++
Sbjct: 247 VITFNALIDAFVKEGKFLDAEELYNEMIRM-SIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 192 NEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG- 250
ME KG V YT+++N K ++A +++ EM +KG+ + Y I +G
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQG-FGQ 364
Query: 251 -GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL---EENGCSPN 306
G P +E+ M G+ P+ +YN L+ C C N + +A ++E + E +G +PN
Sbjct: 365 VGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424
Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
T+ ++ LC +G +KA VF++ T ++++G+ K K+K A +
Sbjct: 425 IWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFC 484
Query: 367 TI-KKKFPPNVL 377
++ K PNV+
Sbjct: 485 SLPSKGVKPNVV 496
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 146/332 (43%), Gaps = 9/332 (2%)
Query: 44 ALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN- 102
AL ++ + + P Y V L S R+ D ++L+ KI + N
Sbjct: 196 ALSLFDQMENYGIRPDVVMYTS--LVNGLCNSGRWRDADSLLRG-MTKRKIKPDVITFNA 252
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI ++ + G F A +++M + ++ ++ +L+ D+ +F + K
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETK- 311
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
PD ++Y L+ C D A+++ EM KG+ T+TYTT++ + G A
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVA 371
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDA---GLKPDTISYNFL 278
+ ++S M +GV ++ YNV + Y G ++ + ++M+ G+ P+ +YN L
Sbjct: 372 QEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVL 431
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ C N +++A V+E + + T+ I +C +G A +F
Sbjct: 432 LHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGV 491
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
P+ T ++ GL ++ EA + R +K+
Sbjct: 492 KPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 106/242 (43%), Gaps = 40/242 (16%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI + G D A + F M+ G V+++ +L+ + + D +F E+ +K
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L+ + I+Y L++ G + A E+ + M ++GV TY +L+CL G ++
Sbjct: 347 -GLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKK 405
Query: 222 AERLWSEMEKK---GVDLDVAAYNVRITN-TYGGDPERLKELIDEMR------------- 264
A ++ +M+K+ GV ++ YNV + Y G E+ + ++MR
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465
Query: 265 ----------------------DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
G+KP+ ++Y +++ + + EA ++ ++E+G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Query: 303 CS 304
S
Sbjct: 526 VS 527
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 135/256 (52%), Gaps = 5/256 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LIR Y +AG+ A+ F++M++ G I+F+ ++ +R R + FD + ++
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF 251
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
PD I Y L++ C +G +A ++ EM+ G+E TY+ V++ L + G A
Sbjct: 252 --EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRA 309
Query: 223 ERLWSEMEKKGVDLDVAAYN--VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
++++M G + +N +R+ + G E++ ++ ++M+ G +PDTI+YNFL+
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRV-HVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIE 368
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
+C++E ++ A KV + + C NA+TF T ++ + + A++++ + + P
Sbjct: 369 AHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEP 428
Query: 341 DFNTVKLLVEGLVKKK 356
+ T +L+ V K
Sbjct: 429 NTVTYNILMRMFVGSK 444
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 161/321 (50%), Gaps = 16/321 (4%)
Query: 59 VSSRYAQDLTVRRLAKSKRFSDIETLIESHKN--DPKITQEPYLCNLIRSYGQAGMFDHA 116
V + A + + L++ +R S+ ++ +S K+ +P + NL+R + +AG A
Sbjct: 218 VPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVI---VYTNLVRGWCRAGEISEA 274
Query: 117 MRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYG 172
+ F +M G +V +++ ++ A R SR +D + D +P+ I++
Sbjct: 275 EKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDS-----GCAPNAITFN 329
Query: 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232
L++ H +G ++K L++ N+M+ G E T+TY ++ + N E A ++ + M KK
Sbjct: 330 NLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKK 389
Query: 233 GVDLDVAAYNVRITNTYGG-DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
+++ + +N D + +M +A +P+T++YN LM + ++ D
Sbjct: 390 KCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMV 449
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI-PDFNTVKLLVE 350
K+ + +++ PN T+R + CG G+++ AYK+FKE V + P + ++++
Sbjct: 450 LKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA 509
Query: 351 GLVKKKKIKEAKGVIRTIKKK 371
L + ++K+ + ++ + +K
Sbjct: 510 QLRRAGQLKKHEELVEKMIQK 530
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 117/238 (49%), Gaps = 3/238 (1%)
Query: 135 FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194
+N ++ + R +D L D + K N+ ++ +L++ + +G + +A+ N M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLID-LMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRM 212
Query: 195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY-NVRITNTYGGDP 253
E+ G + ++ V++ L ++ A EA+ + + K + DV Y N+ G+
Sbjct: 213 EDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEI 271
Query: 254 ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313
+++ EM+ AG++P+ +Y+ ++ C+ + A V+ + ++GC+PNA TF
Sbjct: 272 SEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331
Query: 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
+ +G +K +V+ + + PD T L+E + + ++ A V+ T+ KK
Sbjct: 332 MRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKK 389
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 41/134 (30%)
Query: 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHL 317
LID M+ ++ ++ L+ Y + + EA + +E+ GC P+ F
Sbjct: 172 HLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAF------- 224
Query: 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP--- 374
+++ L +K++ EA+ ++K +F P
Sbjct: 225 ----------------------------SIVISNLSRKRRASEAQSFFDSLKDRFEPDVI 256
Query: 375 ---NVLRAWKKVEE 385
N++R W + E
Sbjct: 257 VYTNLVRGWCRAGE 270
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 6/281 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + G D A ++M G + + FN L+ A C R+ + V I F E+P+K
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI-FREMPRK 488
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
PD ++ L+ C+ AL LL +M ++GV TVTY T++N ++G +E
Sbjct: 489 -GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A +L +EM +G LD YN I G+ ++ + L ++M G P IS N L+
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
C++ M++EA + + + G +P+ TF + I LC +G + +F++ P
Sbjct: 608 GLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPP 667
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVLRAW 380
D T L+ L K + +A ++ I+ F PN R W
Sbjct: 668 DTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN-HRTW 707
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 15/315 (4%)
Query: 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
+ +L + F I+ L+ K++ + +E +++R Y +AG R +M + +
Sbjct: 118 IGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYS 177
Query: 129 PRSVI-SFNALLFACTRSRLYDKVP-ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186
S+N +L + + +D + +K + P ++G+++K+ C D
Sbjct: 178 CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK--IPPTLFTFGVVMKAFCAVNEIDS 235
Query: 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246
AL LL +M G +V Y T+++ L K EA +L EM G D +N I
Sbjct: 236 ALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL 295
Query: 247 NTYGGDPERLKE---LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303
D R+ E +++ M G PD I+Y +LM CK +D AK ++ + +
Sbjct: 296 GLCKFD--RINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK--- 350
Query: 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAK 362
P F T I+ G D A V + V + I PD T L+ G K+ + A
Sbjct: 351 -PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 363 GVIRTIKKK-FPPNV 376
V+ ++ K PNV
Sbjct: 410 EVLHDMRNKGCKPNV 424
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 15/270 (5%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN-ALLFACTRSRLYDKVPILFDEIPKK 161
LI S + + A++ ++M +G +FN +L C R+ + ++ + +
Sbjct: 258 LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 317
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ +PD I+YG L+ C G D A +L + + V + T+++ G ++
Sbjct: 318 F--APDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDD 371
Query: 222 AERLWSEM-EKKGVDLDVAAYNVRITNTYGGDPERLK----ELIDEMRDAGLKPDTISYN 276
A+ + S+M G+ DV YN I YG E L E++ +MR+ G KP+ SY
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLI---YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336
L+ +CK +DEA V + +G PN F I C +A ++F+E
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
Query: 337 HKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
PD T L+ GL + +IK A ++R
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLR 518
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 146/335 (43%), Gaps = 9/335 (2%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
D AL + ++KH P S Y + L+K R ++ L+E +
Sbjct: 234 DSALSLLRDMTKHGCVPNSVIYQT--LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 291
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
++I + + A + ++M G I++ L+ + D LF IPK
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK- 350
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEM-ENKGVEVTTVTYTTVLNCLYKQGNAE 220
P+ + + L+ G D A +L++M + G+ TY +++ +K+G
Sbjct: 351 ----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVG 406
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLM 279
A + +M KG +V +Y + + G + +++EM GLKP+T+ +N L+
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
+ +CK + EA +++ + GC P+ TF + I LC A + ++ + +
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526
Query: 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374
+ T L+ +++ +IKEA+ ++ + + P
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 7/214 (3%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI + HA+ M G + +++N L+ A R + L +E+
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM--V 556
Query: 162 YNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
+ SP D+I+Y L+K C +G DKA L +M G + ++ ++N L + G E
Sbjct: 557 FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVE 616
Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
EA EM +G D+ +N I G E + +++ G+ PDT+++N LM
Sbjct: 617 EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM 676
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313
+ CK + +A + + E+G PN RTW
Sbjct: 677 SWLCKGGFVYDACLLLDEGIEDGFVPNH---RTW 707
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 9/272 (3%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELG-TPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+++++ D A+ M + G P SVI + L+ + ++ ++ L +E+
Sbjct: 223 VMKAFCAVNEIDSALSLLRDMTKHGCVPNSVI-YQTLIHSLSKCNRVNEALQLLEEM-FL 280
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
PD ++ ++ C ++A +++N M +G +TY ++N L K G +
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN--TYGGDPERLKELIDEMRDAGLKPDTISYNFLM 279
A+ L+ + K ++ +N I T+G + L D + G+ PD +YN L+
Sbjct: 341 AKDLFYRIPKP----EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
Y K ++ A +V + GC PN ++ + C G D+AY V E
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Query: 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
P+ L+ K+ +I EA + R + +K
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 161/384 (41%), Gaps = 39/384 (10%)
Query: 40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99
DP++AL ++ + Y+ + +LAKS+ F ++ ++ + +E
Sbjct: 61 DPEEALSLFHQYQEMGFRHDYPSYSS--LIYKLAKSRNFDAVDQILRLVRYRNVRCRESL 118
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
LI+ YG+AG D A+ F ++ R++ S N L+ + +K FD
Sbjct: 119 FMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDG-A 177
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK---- 215
K L P+ +S+ +L+K D + A ++ +EM V+ + VTY +++ L +
Sbjct: 178 KDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDM 237
Query: 216 -------------------------------QGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
+G EA++L +ME +G + Y +
Sbjct: 238 GKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGIL 297
Query: 245 ITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303
+++ G + K L+ EM+ +KPD + YN L+ C + EA +V ++ GC
Sbjct: 298 MSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGC 357
Query: 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363
PNA T+R I C +FD V + P T +V GL+K + A
Sbjct: 358 KPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACF 417
Query: 364 VIRTIKKKFPPNVLRAWKKVEEEL 387
V+ + KK AW+ + +L
Sbjct: 418 VLEVMGKKNLSFGSGAWQNLLSDL 441
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 171/365 (46%), Gaps = 12/365 (3%)
Query: 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASP-VSSRYAQDLTVRRLAKSKRFSDI 81
+ +I+ S+ +R+E D +K++ ++ S + YA+ V + + V RL + +F
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAA 70
Query: 82 ETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG---TPRSVISFNAL 138
E LI K + + E L ++ R YG+ ++R F +M + + ++ ++ A+
Sbjct: 71 EDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAI 130
Query: 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC-DSGSSDKALELLNEMENK 197
L + L K F + ++ L P S +L+K+ C + G+ D L++ EM +
Sbjct: 131 LVEENQLNLAFK----FYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG-DPERL 256
G + + TY T+++ L + G +EA++L++EM +K V Y I G + +
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246
Query: 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH 316
++EM+ G++P+ +Y+ LM CK+ +A +++E + GC PN T+ T I
Sbjct: 247 MRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Query: 317 LCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPN 375
LC +A ++ + PD ++ G K +EA + I PN
Sbjct: 307 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPN 366
Query: 376 VLRAW 380
L W
Sbjct: 367 RL-TW 370
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 167/379 (44%), Gaps = 70/379 (18%)
Query: 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIE 86
S ++ + + S+ DP A +I+ S+ + SR + + + +L + + F+ I+ ++
Sbjct: 50 SPTRVQKLIASQSDPLLAKEIFDYASQQ-PNFRHSRSSHLILILKLGRGRYFNLIDDVLA 108
Query: 87 SHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG-TPRS---------VISFN 136
H++ LI+ Y +A + + + TF +M E TP+ ++S
Sbjct: 109 KHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHR 168
Query: 137 ALL---FACTRS-RLYDKVP------------ILFDEIPKKYNL---------SPDKISY 171
L F +S RL+ +P L D++ Y L PD SY
Sbjct: 169 GYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSY 228
Query: 172 GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231
+L++ C G + A+ELL++M NKG ++YTT+LN L ++ EA +L M+
Sbjct: 229 KILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKL 288
Query: 232 KGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
KG + PD + YN ++ +C+ + +A
Sbjct: 289 KGCN----------------------------------PDLVHYNTMILGFCREDRAMDA 314
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351
+KV + + NGCSPN+ ++RT I LC G FD+ K +E + P F+ LV+G
Sbjct: 315 RKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKG 374
Query: 352 LVKKKKIKEAKGVIRTIKK 370
K++EA V+ + K
Sbjct: 375 FCSFGKVEEACDVVEVVMK 393
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 62/124 (50%)
Query: 248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
++ G ++ EL R G+ P+T SYN LM +C N+ + A +++ + E P+
Sbjct: 166 SHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDV 225
Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
+++ I C G + A ++ + + +PD + L+ L +K +++EA ++
Sbjct: 226 DSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCR 285
Query: 368 IKKK 371
+K K
Sbjct: 286 MKLK 289
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 10/293 (3%)
Query: 81 IETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140
I+ ++E+ ++T P L N++ GQ + AM +M+E + ++ ++
Sbjct: 216 IDRMVETGFQPNEVTYGPVL-NVMCKSGQTAL---AMELLRKMEERNIKLDAVKYSIIID 271
Query: 141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE 200
+ D LF+E+ K D I+Y L+ C++G D +LL +M + +
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIK-GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330
Query: 201 VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE-- 258
VT++ +++ K+G EA++L EM ++G+ + YN I RL+E
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC--KENRLEEAI 388
Query: 259 -LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHL 317
++D M G PD +++N L+ YCK +D+ +++ + G N T+ T +
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
C SG + A K+F+E V PD + K+L++GL ++++A + I+K
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 39/301 (12%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
+I + G D+A F++M+ G +I++N L+ C R D +L D I +K
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+SP+ +++ +L+ S G +A +LL EM +G+ T+TY ++++ K+ EE
Sbjct: 329 --ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 222 AERLWSEMEKKGVDLDVAAYNVRI---------------------------TNTYG---- 250
A ++ M KG D D+ +N+ I T TY
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446
Query: 251 -----GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305
G E K+L EM ++PD +SY L+ C N +++A +++ +E++
Sbjct: 447 GFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL 506
Query: 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+ + I+ +C + D A+ +F + D +++ L +K + +A +
Sbjct: 507 DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILF 566
Query: 366 R 366
R
Sbjct: 567 R 567
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Query: 84 LIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143
L+ S DP I L N Y +A D + F +M G + +++N L+
Sbjct: 393 LMISKGCDPDIMTFNILIN---GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFC 449
Query: 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT 203
+S + LF E+ + + PD +SY +LL CD+G +KALE+ ++E +E+
Sbjct: 450 QSGKLEVAKKLFQEMVSR-RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDI 508
Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDE 262
Y +++ + ++A L+ + KGV LD AYN+ I+ D + L +
Sbjct: 509 GIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRK 568
Query: 263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322
M + G PD ++YN L+ + ++ A ++ E ++ +G + +T + I ++ SG
Sbjct: 569 MTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVI-NMLSSGE 627
Query: 323 FDKAY 327
DK++
Sbjct: 628 LDKSF 632
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 129/277 (46%), Gaps = 5/277 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI S+ + G A + +M + G + I++N+L+ C +RL + + ++ I K
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ PD +++ +L+ +C + D LEL EM +GV TVTY T++ + G E
Sbjct: 399 CD--PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A++L+ EM + V D+ +Y + + G+ E+ E+ ++ + ++ D Y ++
Sbjct: 457 AKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIH 516
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
C +D+A ++ L G +A + I LC + KA +F++ P
Sbjct: 517 GMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAP 576
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNV 376
D T +L+ + A +I +K FP +V
Sbjct: 577 DELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADV 613
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 7/260 (2%)
Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK--KYNLSPDKISYGLLLKSHC 179
QM+ G S+ + + ++ R R K+ F + K K PD + + LL C
Sbjct: 113 QMESKGIAHSIYTLSIMINCFCRCR---KLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169
Query: 180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA 239
+ALEL++ M G + T +T T++N L G +A L M + G +
Sbjct: 170 LECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229
Query: 240 AYN-VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
Y V G EL+ +M + +K D + Y+ ++ CK+ +D A ++ +
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
E G + T+ T I C +G +D K+ ++ + P+ T +L++ VK+ K+
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 359 KEAKGVIR-TIKKKFPPNVL 377
+EA +++ +++ PN +
Sbjct: 350 READQLLKEMMQRGIAPNTI 369
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 37/249 (14%)
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGV-------------------------- 199
P I + L + + + L L +ME+KG+
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 200 ---------EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TY 249
E TV + T+LN L + EA L M + G + N +
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT 309
G LID M + G +P+ ++Y ++ CK+ A ++ +EE +A
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR-TI 368
+ I LC G+ D A+ +F E + D T L+ G + + ++R I
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 369 KKKFPPNVL 377
K+K PNV+
Sbjct: 326 KRKISPNVV 334
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 11/286 (3%)
Query: 93 KITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
K+ EP L +L+ Y + A+ DQM E+G +F L+
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209
+ L D++ ++ PD ++YG ++ C G D AL LLN+ME ++ V + T+
Sbjct: 206 EAVALVDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264
Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN--VRITNTYG--GDPERLKELIDEMRD 265
++ L K + E A L++EME KG+ +V YN + YG D R L+ M +
Sbjct: 265 IDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR---LLSNMLE 321
Query: 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK 325
+ P+ +++N L+ + K + EA+K++E + + P+ T+ I C D+
Sbjct: 322 KKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDE 381
Query: 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
A ++FK V +P+ T L+ G K K++++ + R + ++
Sbjct: 382 AKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQR 427
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 8/291 (2%)
Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
G D A+ ++M+ +V+ FN ++ + + R + LF E+ K + P+ ++
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK-GIRPNVVT 295
Query: 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
Y L+ C+ G A LL+ M K + VT+ +++ +K+G EAE+L EM
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355
Query: 231 KKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD 289
++ +D D YN+ I + K++ M P+ +YN L+ +CK + ++
Sbjct: 356 QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVE 415
Query: 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP-DFNTVKLL 348
+ +++ + + G N T+ T I +G+ D A VFK+ V +++P D T +L
Sbjct: 416 DGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV-SNRVPTDIMTYSIL 474
Query: 349 VEGLVKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVEEELGLVPAPAVGDG 398
+ GL K+ A + + ++K + N+ +E G+ A VG+
Sbjct: 475 LHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIE---GMCKAGKVGEA 522
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 4/262 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + F+ + +QM LG + +++ + C RS+L + +L +
Sbjct: 89 LLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLG 148
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y PD ++ LL +C S A+ L+++M G + T T+TT+++ L+ A E
Sbjct: 149 Y--EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASE 206
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L +M ++G D+ Y + GD + L+++M A +K + + +N ++
Sbjct: 207 AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIID 266
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK ++ A ++ +E G PN T+ + I LC G + A ++ + P
Sbjct: 267 SLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINP 326
Query: 341 DFNTVKLLVEGLVKKKKIKEAK 362
+ T L++ K+ K+ EA+
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAE 348
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 134/306 (43%), Gaps = 40/306 (13%)
Query: 44 ALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN- 102
A+D+++ + P Y + L R+SD L+ S+ + KI N
Sbjct: 277 AVDLFTEMETKGIRPNVVTYNS--LINCLCNYGRWSDASRLL-SNMLEKKINPNVVTFNA 333
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
LI ++ + G A + ++M + I++N L+ C +RL D+ +F + K
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL-DEAKQMFKFMVSK 392
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L P+ +Y L+ C + +EL EM +G+ TVTYTT++ ++ G+ +
Sbjct: 393 DCL-PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDS 451
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN--TYGGDPERL------------------KELID 261
A+ ++ +M V D+ Y++ + +YG L +I+
Sbjct: 452 AQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIE 511
Query: 262 EMRDAG-------------LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308
M AG +KPD ++YN +++ C ++ EA ++ ++E+G PN+
Sbjct: 512 GMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSG 571
Query: 309 TFRTWI 314
T+ T I
Sbjct: 572 TYNTLI 577
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 113/246 (45%), Gaps = 18/246 (7%)
Query: 144 RSRLYDKVPI-----LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG 198
R+RL D + + LF ++ K P + + LL + + + L +M+ G
Sbjct: 55 RNRLSDIIKVDDAVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG 113
Query: 199 VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE 258
+ TY+ +NC ++ A + ++M K G + D+ + + N Y +R+ +
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLS-SLLNGY-CHSKRISD 171
Query: 259 ---LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY 315
L+D+M + G KPDT ++ L+ + EA + + + + GC P+ T+ T +
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 316 HLCGSGNFDKAYKVFKE---SVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK- 371
LC G+ D A + + + + + FNT+ ++ L K + ++ A + ++ K
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTI---IDSLCKYRHVEVAVDLFTEMETKG 288
Query: 372 FPPNVL 377
PNV+
Sbjct: 289 IRPNVV 294
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 9/272 (3%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL-FACTRSRLYDKVPILFDEIPKK 161
L++ + G + A +M G + ++N +L + C R + + E+ K+
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE----VLREM-KE 320
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L PD +SY +L++ ++G + A +EM +G+ T TY T+++ L+ + E
Sbjct: 321 IGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEA 380
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTY--GGDPERLKELIDEMRDAGLKPDTISYNFLM 279
AE L E+ +KG+ LD YN+ I N Y GD ++ L DEM G++P +Y L+
Sbjct: 381 AEILIREIREKGIVLDSVTYNILI-NGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLI 439
Query: 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
C+ EA +++E + G P+ T + C GN D+A+ + KE M+
Sbjct: 440 YVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSIN 499
Query: 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
PD T L+ GL + K +EA+ ++ +K++
Sbjct: 500 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 3/275 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LIR G + A D+M + G + ++N L+ + IL EI +K
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREK- 391
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ D ++Y +L+ +C G + KA L +EM G++ T TYT+++ L ++ EA
Sbjct: 392 GIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREA 451
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+ L+ ++ KG+ D+ N + G+ +R L+ EM + PD ++YN LM
Sbjct: 452 DELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRG 511
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
C +EA+++ ++ G P+ ++ T I G+ A+ V E + + P
Sbjct: 512 LCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPN 375
T L++GL K ++ + A+ ++R +K + PN
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPN 606
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 2/257 (0%)
Query: 59 VSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMR 118
V + Y + + L + E LI + + LI Y Q G A
Sbjct: 359 VPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFA 418
Query: 119 TFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178
D+M G + ++ +L++ R + LF+++ K + PD + L+ H
Sbjct: 419 LHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGK-GMKPDLVMMNTLMDGH 477
Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
C G+ D+A LL EM+ + VTY ++ L +G EEA L EM+++G+ D
Sbjct: 478 CAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDH 537
Query: 239 AAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297
+YN I+ + GD + + DEM G P ++YN L+ KN+ + A+++
Sbjct: 538 ISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLRE 597
Query: 298 LEENGCSPNATTFRTWI 314
++ G PN ++F + I
Sbjct: 598 MKSEGIVPNDSSFCSVI 614
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 38/269 (14%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
L+R Q M D A+ F M E G + N +L +R + + + ++ +
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADM-YRM 219
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ + ++ +++ C G KA L ME G++ T VTY T++ +G E A
Sbjct: 220 EIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGA 279
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282
+ SEM+ KG D+ YN + ++ + R E++ EM++ GL PD++SYN L+
Sbjct: 280 RLIISEMKSKGFQPDMQTYNPIL--SWMCNEGRASEVLREMKEIGLVPDSVSYNILI--- 334
Query: 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF 342
GCS N G+ + A+ E V +P F
Sbjct: 335 ------------------RGCSNN--------------GDLEMAFAYRDEMVKQGMVPTF 362
Query: 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
T L+ GL + KI+ A+ +IR I++K
Sbjct: 363 YTYNTLIHGLFMENKIEAAEILIREIREK 391
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 256 LKELIDEM---RDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT 312
++ L DE+ D TI ++ L+ C C+ M+DEA + + ++E G P T
Sbjct: 136 IRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNH 195
Query: 313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
+ L + A+ + + + + T +++ L K+ K+K+AKG +
Sbjct: 196 ILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFL 248
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 157/328 (47%), Gaps = 11/328 (3%)
Query: 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES 87
V KA KLR D+A++++ + + P Y + L K +R + L++
Sbjct: 193 VIKALCKLRF---VDRAIEVFRGMPERKCLPDGYTYCT--LMDGLCKEERIDEAVLLLDE 247
Query: 88 HKNDPKITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRS 145
+++ + P + N LI + G + D M G + +++N L+ C +
Sbjct: 248 MQSE-GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKG 306
Query: 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT 205
+L V +L + K P+ ++YG L+ + A+ LL+ ME +G +
Sbjct: 307 KLDKAVSLLERMVSSK--CIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364
Query: 206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMR 264
Y+ +++ L+K+G AEEA LW +M +KG ++ Y+V + G P KE+++ M
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424
Query: 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD 324
+G P+ +Y+ LM + K + +EA +V++ +++ GCS N + I LCG G
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484
Query: 325 KAYKVFKESVMVHKIPDFNTVKLLVEGL 352
+A V+ + + + PD +++GL
Sbjct: 485 EAMMVWSKMLTIGIKPDTVAYSSIIKGL 512
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 10/313 (3%)
Query: 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM-DELGTPRS 131
A S F +E L+ + + ++ E + R+YG+A + D A+ F +M DE RS
Sbjct: 88 ANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRS 147
Query: 132 VISFNALLFACTRSRLYDKVPILFDEIPK---KYNLSPDKISYGLLLKSHCDSGSSDKAL 188
V SFN++L LY + +D + N+SP+ +S+ L++K+ C D+A+
Sbjct: 148 VKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAI 207
Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN- 247
E+ M + TY T+++ L K+ +EA L EM+ +G YNV I
Sbjct: 208 EVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGL 267
Query: 248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
GD R+ +L+D M G P+ ++YN L+ C +D+A + E + + C PN
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFN--TVKLLVEGLVKKKKIKEAKGVI 365
T+ T I L A ++ S M + N +L+ GL K+ K +EA +
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLL--SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLW 385
Query: 366 RTIKKK-FPPNVL 377
R + +K PN++
Sbjct: 386 RKMAEKGCKPNIV 398
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 8/303 (2%)
Query: 66 DLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPY-LCNLIRSYGQAGMFDHAMRTFDQ 122
+L ++ L K RF D IE + P K + Y C L+ + D A+ D+
Sbjct: 191 NLVIKALCKL-RFVD--RAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182
M G S + +N L+ + +V L D + K P++++Y L+ C G
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK-GCVPNEVTYNTLIHGLCLKG 306
Query: 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN 242
DKA+ LL M + VTY T++N L KQ A +A RL S ME++G L+ Y+
Sbjct: 307 KLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYS 366
Query: 243 VRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301
V I+ + G E L +M + G KP+ + Y+ L+ C+ +EAK++ + +
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426
Query: 302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
GC PNA T+ + + +G ++A +V+KE + +L++GL ++KEA
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486
Query: 362 KGV 364
V
Sbjct: 487 MMV 489
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 144/350 (41%), Gaps = 21/350 (6%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
DKA+ + + P Y + L K +R +D L+ S + +
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGT--LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYS 366
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
LI + G + AM + +M E G +++ ++ L+ R ++ + + +
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L P+ +Y L+K +G ++A+++ EM+ G Y+ +++ L G +E
Sbjct: 427 GCL-PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKE 485
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEM---RDAGLKPDTISYNF 277
A +WS+M G+ D AY+ I G G + +L EM + +PD ++YN
Sbjct: 486 AMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNI 545
Query: 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337
L+ C + + A + + + GC P+ T T++ L N + F E ++V
Sbjct: 546 LLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605
Query: 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387
L+K++++ A ++ + K+ W + E+
Sbjct: 606 --------------LLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREI 641
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 115/294 (39%), Gaps = 76/294 (25%)
Query: 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN--------------------- 192
+F PK + + +++S+ +SG D +LL+
Sbjct: 63 MFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAY 122
Query: 193 ---EMENKGVEV------------TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237
+ +K V++ + ++ +VLN + +G + + ++++
Sbjct: 123 GKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMN 182
Query: 238 VA----AYNV------------RITNTYGGDPER----------------LKE------- 258
++ ++N+ R + G PER KE
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 259 -LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHL 317
L+DEM+ G P + YN L+ CK + K+ + + GC PN T+ T I+ L
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
C G DKA + + V IP+ T L+ GLVK+++ +A ++ +++++
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 155/381 (40%), Gaps = 79/381 (20%)
Query: 93 KITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
K+ EP L +L+ + A+ QM E+G +FN L+ R
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203
Query: 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209
+ L D + K PD ++YG+++ C G D AL LL +ME +E V Y T+
Sbjct: 204 EAVALVDRMVVK-GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN--VRITNTYG--GDPERL--------- 256
++ L N +A L++EM+ KG+ +V YN +R YG D RL
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 257 -----------------------KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKK 293
++L DEM + PD +Y+ L+ +C ++ +DEAK
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 294 VYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE-------------SVMVHK-- 338
++E + C PN T+ T I C + D+ ++F+E + ++H
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFF 442
Query: 339 --------------------IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK-KFPPNVL 377
+PD T +L++GL K++ A V +++ K P++
Sbjct: 443 QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIY 502
Query: 378 RAWKKVEEELGLVPAPAVGDG 398
+E G+ A V DG
Sbjct: 503 TYNIMIE---GMCKAGKVEDG 520
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 154/333 (46%), Gaps = 12/333 (3%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES---HKNDPKITQEP 98
+ AL++++ + P Y +R L R+SD L+ K +P +
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNS--LIRCLCNYGRWSDASRLLSDMIERKINPNVVT-- 328
Query: 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDE 157
LI ++ + G A + +D+M + + ++++L+ C RL D+ +F+
Sbjct: 329 -FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFEL 386
Query: 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217
+ K + P+ ++Y L+K C + D+ +EL EM +G+ TVTYTT+++ ++
Sbjct: 387 MISK-DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 445
Query: 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYN 276
+ A+ ++ +M GV D+ Y++ + G E + + ++ + ++PD +YN
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505
Query: 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336
++ CK +++ ++ L G PN T+ T + C G ++A +F+E
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565
Query: 337 HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369
+PD T L+ ++ + +IR ++
Sbjct: 566 GPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 125/273 (45%), Gaps = 2/273 (0%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LIR G + A R M E +V++F+AL+ A + + L+DE+ K+
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
++ PD +Y L+ C D+A + M +K VTY T++ K +E
Sbjct: 356 -SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGG-DPERLKELIDEMRDAGLKPDTISYNFLMT 280
L+ EM ++G+ + Y I + + + + + +M G+ PD ++Y+ L+
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
C N ++ A V+E L+ + P+ T+ I +C +G + + +F + P
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373
+ T ++ G +K +EA + R +K++ P
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMKEEGP 567
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 2/214 (0%)
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225
P + + LL + D + L +M+N G+ TY+ ++NC ++ A +
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 226 WSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284
++M K G + D+ N + +G L+ +M + G +PD+ ++N L+ +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344
+ EA + + + GC P+ T+ + LC G+ D A + K+ P
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 345 VKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
+++ L K + +A + + K PNV+
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
D A+ L +M + V ++ +L+ + K + L +M+ G+ ++ Y++
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 245 ITNTYGGDPERLKEL--IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
I N + + L + +M G +PD ++ N L+ +C + +A + + E G
Sbjct: 123 I-NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
P++ TF T I+ L +A + V+ PD T ++V GL K+ I A
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 363 GVIRTIKK-KFPPNVL 377
+++ +++ K P V+
Sbjct: 242 SLLKKMEQGKIEPGVV 257
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
+I +AG + F + G +V+++ ++ R L ++ LF E+ ++
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196
L PD +Y L+++H G + EL+ EM +
Sbjct: 567 PL-PDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 139/284 (48%), Gaps = 7/284 (2%)
Query: 93 KITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
K+ EP L +L+ Y A+ DQM E+G I+F L+
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207
Query: 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209
+ L D + ++ P+ ++YG+++ C G +D AL LLN+ME +E V + T+
Sbjct: 208 EAVALVDRMVQR-GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT--NTYGGDPERLKELIDEMRDAG 267
++ L K + ++A L+ EME KG+ +V Y+ I+ +YG + +L+ +M +
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA-SQLLSDMIEKK 325
Query: 268 LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327
+ P+ +++N L+ + K EA+K+Y+ + + P+ T+ + + C DKA
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385
Query: 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371
++F+ V PD T L++G K K++++ + R + +
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 429
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 130/258 (50%), Gaps = 2/258 (0%)
Query: 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173
D A+ ++M+ V+ FN ++ + + R D LF E+ K + P+ ++Y
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRPNVVTYSS 300
Query: 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233
L+ C G A +LL++M K + VT+ +++ K+G EAE+L+ +M K+
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 234 VDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK 292
+D D+ YN + D ++ K++ + M PD ++YN L+ +CK++ +++
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352
+++ + G + T+ T I L G+ D A KVFK+ V PD T +L++GL
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
Query: 353 VKKKKIKEAKGVIRTIKK 370
K+++A V ++K
Sbjct: 481 CNNGKLEKALEVFDYMQK 498
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 8/331 (2%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101
D AL+++ + P Y+ ++ L R+SD L+ S + KI
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISC--LCSYGRWSDASQLL-SDMIEKKINPNLVTF 333
Query: 102 N-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIP 159
N LI ++ + G F A + +D M + + ++N+L+ C RL DK +F+ +
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL-DKAKQMFEFMV 392
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
K + PD ++Y L+K C S + EL EM ++G+ TVTYTT++ L+ G+
Sbjct: 393 SK-DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 451
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFL 278
+ A++++ +M GV D+ Y++ + G E+ E+ D M+ + +K D Y +
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+ CK +D+ ++ L G PN T+ T I LC +AY + K+
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 571
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369
+P+ T L+ ++ + +IR ++
Sbjct: 572 LPNSGTYNTLIRAHLRDGDKAASAELIREMR 602
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 147/312 (47%), Gaps = 9/312 (2%)
Query: 69 VRRLAKSKRFSDIETL---IESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125
+ L K + D L +E+ P + L + + SYG+ + A + M E
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIE 323
Query: 126 LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185
++++FNAL+ A + + + L+D++ K+ ++ PD +Y L+ C D
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR-SIDPDIFTYNSLVNGFCMHDRLD 382
Query: 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245
KA ++ M +K VTY T++ K E+ L+ EM +G+ D Y I
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 246 TNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304
+ GD + +++ +M G+ PD ++Y+ L+ C N +++A +V++ ++++
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502
Query: 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV 364
+ + T I +C +G D + +F + P+ T ++ GL K+ ++EA +
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562
Query: 365 IRTIKKKFP-PN 375
++ +K+ P PN
Sbjct: 563 LKKMKEDGPLPN 574
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 130/278 (46%), Gaps = 5/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + FD + ++M L + ++N L+ C RS++ + +L +
Sbjct: 91 LLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLG 150
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y P ++ LL +C A+ L+++M G T+T+TT+++ L+ A E
Sbjct: 151 Y--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE 208
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L M ++G ++ Y V + GD + L+++M A ++ D + +N ++
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIID 268
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK +D+A +++ +E G PN T+ + I LC G + A ++ + + P
Sbjct: 269 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 328
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVL 377
+ T L++ VK+ K EA+ + IK+ P++
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF 366
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 2/214 (0%)
Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225
P + + LL + D + L +M+ + TY ++NC ++ A L
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 226 WSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284
+M K G + + + + +G L+D+M + G +PDTI++ L+
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344
+ EA + + + + GC PN T+ + LC G+ D A + + D
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 345 VKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
+++ L K + + +A + + ++ K PNV+
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 296
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 143/293 (48%), Gaps = 10/293 (3%)
Query: 78 FSDIETLIESHKNDPKITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN 136
++ I +L+E K+D I + Y N LI + + A + F++M G +++N
Sbjct: 260 WNKITSLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318
Query: 137 ALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196
ALL +S + + +E+ SP ++Y L+ ++ G D+A+EL N+M
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE 377
Query: 197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPE 254
KG + TYTT+L+ + G E A ++ EM G ++ +N I YG G
Sbjct: 378 KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI-KMYGNRGKFT 436
Query: 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314
+ ++ DE+ GL PD +++N L+ + +N M E V++ ++ G P TF T I
Sbjct: 437 EMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Query: 315 --YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365
Y CGS F++A V++ + PD +T ++ L + ++++ V+
Sbjct: 497 SAYSRCGS--FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 140/308 (45%), Gaps = 7/308 (2%)
Query: 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL 126
+ + L K R S + + D +LI ++ +G + A+ F +M+E
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 127 GTPRSVISFNALLFACTR-SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS-S 184
G ++I++N +L + ++K+ L +++ K ++PD +Y L+ + C GS
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKM-KSDGIAPDAYTYNTLI-TCCKRGSLH 295
Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
+A ++ EM+ G VTY +L+ K +EA ++ +EM G + YN
Sbjct: 296 QEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSL 355
Query: 245 ITNTYGGDP--ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
I+ Y D + EL ++M + G KPD +Y L++ + + ++ A ++E + G
Sbjct: 356 IS-AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
C PN TF +I G F + K+F E + PD T L+ + E
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVS 474
Query: 363 GVIRTIKK 370
GV + +K+
Sbjct: 475 GVFKEMKR 482
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 143/332 (43%), Gaps = 39/332 (11%)
Query: 79 SDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL 138
S++ + + K + + LI +Y + G F+ AM + +M + G + ++N +
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTV 530
Query: 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG 198
L A R ++++ + E+ + P++++Y LL ++ + L E+ +
Sbjct: 531 LAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589
Query: 199 VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG-------- 250
+E V T++ K EAER +SE++++G D+ N ++ YG
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVS-IYGRRQMVAKA 648
Query: 251 -----------------------------GDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
D + +E++ E+ G+KPD ISYN ++
Sbjct: 649 NGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
YC+N M +A +++ + +G P+ T+ T+I F++A V + + P+
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373
NT +V+G K + EAK + ++ P
Sbjct: 769 QNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDP 800
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 18/291 (6%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI +Y + GM D AM +QM E GT V ++ LL R+ + +F+E+ +
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM-RN 412
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
P+ ++ +K + + G + +++ +E+ G+ VT+ T+L + G E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
++ EM++ G + +N I+ + G E+ + M DAG+ PD +YN ++
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
+ M ++++KV +E+ C PN T+ + ++ AY KE ++H +
Sbjct: 533 ALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLH----------AYANGKEIGLMHSL- 581
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391
+ + G+++ + + V+ K P RA+ +++E G P
Sbjct: 582 ----AEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER-GFSP 627
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 132/339 (38%), Gaps = 38/339 (11%)
Query: 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLI 85
IS ++++ R+ + ++ S H SP + + L + S + L
Sbjct: 65 ISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELF 124
Query: 86 ESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145
E K+ P+ T L ++ G FD A+R FD +
Sbjct: 125 EPFKDKPESTSSELLA-FLKGLGFHKKFDLALRAFDWFMK-------------------- 163
Query: 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT 205
K Y D +++ G A + N ++ G + +
Sbjct: 164 -------------QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYS 210
Query: 206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDP-ERLKELIDE 262
YT++++ G EA ++ +ME+ G + YNV I N +G G P ++ L+++
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNV-ILNVFGKMGTPWNKITSLVEK 269
Query: 263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322
M+ G+ PD +YN L+TC + + EA +V+E ++ G S + T+ + S
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 323 FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
+A KV E V+ P T L+ + + EA
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA 368
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 4/264 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI + +AG + A M ++G ++++N LL + + + + E+ +
Sbjct: 226 LISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS- 284
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALE-LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
+ D SY LLK HC DK ++ EME +G V+Y+T++ + N +
Sbjct: 285 GIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGF-CDVVSYSTLIETFCRASNTRK 343
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A RL+ EM +KG+ ++V Y I G+ K+L+D+M + GL PD I Y ++
Sbjct: 344 AYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILD 403
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK+ +D+A V+ + E+ +P+A ++ + I LC SG +A K+F++ P
Sbjct: 404 HLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCP 463
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGV 364
D T K ++ GL++ KK+ A V
Sbjct: 464 DELTFKFIIGGLIRGKKLSAAYKV 487
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 122/305 (40%), Gaps = 36/305 (11%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI +AG A+ ++ M G + AL+ +R D + E K
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ + Y L+ C +G +KA L + M G E VTY +LN Y + A
Sbjct: 215 RVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI------------------------------------T 246
E + +EM + G+ LD +YN + T
Sbjct: 275 EGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIET 334
Query: 247 NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
+ + L +EMR G+ + ++Y L+ + + AKK+ + + E G SP+
Sbjct: 335 FCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPD 394
Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
+ T + HLC SGN DKAY VF + + PD + L+ GL + ++ EA +
Sbjct: 395 RIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFE 454
Query: 367 TIKKK 371
+K K
Sbjct: 455 DMKGK 459
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 9/246 (3%)
Query: 93 KITQEPYLCN---LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
KI EP L L+ Y M A +M G S+N LL R D
Sbjct: 248 KIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPD 307
Query: 150 KV-PILFDEI-PKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYT 207
K + E+ P+ + D +SY L+++ C + ++ KA L EM KG+ + VTYT
Sbjct: 308 KCYNFMVKEMEPRGF---CDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYT 364
Query: 208 TVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDA 266
+++ ++GN+ A++L +M + G+ D Y + + G+ ++ + ++M +
Sbjct: 365 SLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEH 424
Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
+ PD ISYN L++ C++ + EA K++E ++ C P+ TF+ I L A
Sbjct: 425 EITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAA 484
Query: 327 YKVFKE 332
YKV+ +
Sbjct: 485 YKVWDQ 490
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 42/272 (15%)
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR-SRL-------YDKV 151
+ NL++S GM D+A++ FD+M +N + R SR +D
Sbjct: 16 IANLVKS----GMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMK 71
Query: 152 PILFDEIP-------------KKYNLS-------------PDKISYGLLLKSHCDSGSSD 185
P+ F IP KK++L PD ++ + L C
Sbjct: 72 PMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVG 131
Query: 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD---VAAYN 242
A++ M +G E V+YT ++N L++ G +A +W+ M + GV D AA
Sbjct: 132 FAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALV 191
Query: 243 VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
V + + D + + +E++ A +K T+ YN L++ +CK +++A+ + + + G
Sbjct: 192 VGLCHARKVDLA-YEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIG 250
Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334
C P+ T+ + + + +A V E V
Sbjct: 251 CEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMV 282
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
Query: 115 HAMRTFDQMDELGTPRS---VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY 171
H + ++ M + PR V+S++ L+ R+ K LF+E+ +K + + ++Y
Sbjct: 305 HPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQK-GMVMNVVTY 363
Query: 172 GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231
L+K+ G+S A +LL++M G+ + YTT+L+ L K GN ++A ++++M +
Sbjct: 364 TSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIE 423
Query: 232 KGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDE 290
+ D +YN I+ G +L ++M+ PD +++ F++ + + +
Sbjct: 424 HEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSA 483
Query: 291 AKKVYEGLEENG 302
A KV++ + + G
Sbjct: 484 AYKVWDQMMDKG 495
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Query: 84 LIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143
L E + + +LI+++ + G A + DQM ELG I + +L
Sbjct: 347 LFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLC 406
Query: 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT 203
+S DK +F+++ + + ++PD ISY L+ C SG +A++L +M+ K
Sbjct: 407 KSGNVDKAYGVFNDMIE-HEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDE 465
Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237
+T+ ++ L + A ++W +M KG LD
Sbjct: 466 LTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLD 499
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 1/199 (0%)
Query: 164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE 223
L +++Y + + SG D A+++ +EM + V + Y + L ++ E AE
Sbjct: 5 LGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAE 64
Query: 224 RLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTCY 282
++ +M+ G L Y+ I+ + + L+ +M G PD ++N +
Sbjct: 65 AIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLL 124
Query: 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF 342
C+ + A + + + + G P+ ++ I L +G A +++ + PD
Sbjct: 125 CRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDN 184
Query: 343 NTVKLLVEGLVKKKKIKEA 361
LV GL +K+ A
Sbjct: 185 KACAALVVGLCHARKVDLA 203
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 154/381 (40%), Gaps = 79/381 (20%)
Query: 93 KITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149
K+ EP L +L+ Y A+ DQM + + ++FN L+
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209
+ L D + + PD +YG ++ C G D AL LL +ME +E V YTT+
Sbjct: 203 EAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN--VRITNTYG--GDPERL--------- 256
++ L N +A L++EM+ KG+ +V YN +R YG D RL
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Query: 257 -----------------------KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKK 293
++L DEM + PD +Y+ L+ +C ++ +DEAK
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 294 VYEGLEENGCSPNATTFRTWIYHLC----------------------------------- 318
++E + C PN T+ T I C
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 319 GSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK-KFPPNVL 377
+G+ D A K+FK+ V PD T +L++GL K K+++A V ++K K P++
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 378 RAWKKVEEELGLVPAPAVGDG 398
+E G+ A V DG
Sbjct: 502 TYNIMIE---GMCKAGKVEDG 519
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 2/270 (0%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LIR G + A R M E +V++F+AL+ A + + L+DE+ K+
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
++ PD +Y L+ C D+A + M +K VTY T++ K EE
Sbjct: 355 -SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 413
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTY-GGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
L+ EM ++G+ + YN I + GD + +++ +M G+ PD I+Y+ L+
Sbjct: 414 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
CK +++A V+E L+++ P+ T+ I +C +G + + +F + P
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
+ ++ G +K +EA + R +K+
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKE 563
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 148/315 (46%), Gaps = 12/315 (3%)
Query: 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIES---HKNDPKITQEP 98
+ AL++++ + P Y +R L R+SD L+ K +P +
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNS--LIRCLCNYGRWSDASRLLSDMIERKINPNVVT-- 327
Query: 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDE 157
LI ++ + G A + +D+M + + ++++L+ C RL D+ +F+
Sbjct: 328 -FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFEL 385
Query: 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217
+ K + P+ ++Y L+K C + ++ +EL EM +G+ TVTY T++ L++ G
Sbjct: 386 MISK-DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 444
Query: 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYN 276
+ + A++++ +M GV D+ Y++ + G E+ + + ++ + ++PD +YN
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504
Query: 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336
++ CK +++ ++ L G PN + T I C G ++A +F+E
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564
Query: 337 HKIPDFNTVKLLVEG 351
+P+ T L+
Sbjct: 565 GTLPNSGTYNTLIRA 579
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 5/278 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILFDEIPKK 161
L+ + + FD + ++M L + S+N L+ C RS+L + +L +
Sbjct: 86 LLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLG 145
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
Y PD ++ LL +C +A+ L+++M + TVT+ T+++ L+ A E
Sbjct: 146 Y--EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASE 203
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMT 280
A L M +G D+ Y + GD + L+ +M ++ D + Y ++
Sbjct: 204 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263
Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
C + +++A ++ ++ G PN T+ + I LC G + A ++ + + P
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323
Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVI-RTIKKKFPPNVL 377
+ T L++ VK+ K+ EA+ + IK+ P++
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI+ QAG D A + F +M G P +I+++ LL + +K ++F E +K
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKS 494
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
+ PD +Y ++++ C +G + +L + KGV+ + YTT+++ ++G EEA
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 223 ERLWSEMEKKGVDLDVAAYNVRI-TNTYGGDPERLKELIDEMRDAGLKPD--TIS 274
+ L+ EM++ G + YN I GD ELI EMR G D TIS
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTIS 609
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
D A++L EM + V + +L+ + K + L M+ + D+ +YN+
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNIL 121
Query: 245 ITNTYGGDPERLKEL--IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
I N + + L + +M G +PD ++ + L+ YC + + EA + + +
Sbjct: 122 I-NCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
PN TF T I+ L +A + V PD T +V GL K+ I A
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 363 GVIRTIKK 370
+++ ++K
Sbjct: 241 SLLKKMEK 248
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 133/272 (48%), Gaps = 2/272 (0%)
Query: 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
L +L+ + Q F A+ D MD G +V+ +N ++ ++R + +F +
Sbjct: 152 LGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCME 211
Query: 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNA 219
KK + D ++Y L+ +SG A LL +M + ++ + +T +++ K+GN
Sbjct: 212 KK-GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 270
Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFL 278
EA L+ EM ++ V +V YN I G K + D M G PD ++YN L
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 330
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
+T +CK++ +++ K++ + G +A T+ T I+ C +G + A KVF V
Sbjct: 331 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390
Query: 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370
PD T +L++ L KI++A ++ ++K
Sbjct: 391 SPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 3/275 (1%)
Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
LI +G + A R M + +VI F AL+ + + L+ E+ ++
Sbjct: 225 LISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR- 283
Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
++ P+ +Y L+ C G A + + M +KG VTY T++ K E+
Sbjct: 284 SVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDG 343
Query: 223 ERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
+L+ EM +G+ D YN I G +++ + M D G+ PD ++YN L+ C
Sbjct: 344 MKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDC 403
Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341
C N +++A + E L+++ + T+ I LC + +A+ +F+ PD
Sbjct: 404 LCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPD 463
Query: 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPN 375
++ GL +K +EA + R +K+ F P+
Sbjct: 464 AIAYITMISGLCRKGLQREADKLCRRMKEDGFMPS 498
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 6/208 (2%)
Query: 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
+LI + G A FD M G V+++N L+ +S+ + LF E+ +
Sbjct: 294 SLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQ 353
Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
L D +Y L+ +C +G + A ++ N M + GV VTY +L+CL G E+
Sbjct: 354 -GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEK 412
Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE---LIDEMRDAGLKPDTISYNFL 278
A + +++K +D+D+ YN+ I D +LKE L + G+KPD I+Y +
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTD--KLKEAWCLFRSLTRKGVKPDAIAYITM 470
Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPN 306
++ C+ + EA K+ ++E+G P+
Sbjct: 471 ISGLCRKGLQREADKLCRRMKEDGFMPS 498
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 2/250 (0%)
Query: 113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYG 172
FD + + +M+ LG + SF L+ R L ++ K P ++ G
Sbjct: 95 FDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKM-MKLGFRPSIVTLG 153
Query: 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232
LL C +A+ L++ M+ G V Y TV+N L K + A ++ MEKK
Sbjct: 154 SLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKK 213
Query: 233 GVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEA 291
G+ D YN I+ + G L+ +M + P+ I + L+ + K + EA
Sbjct: 214 GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEA 273
Query: 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351
+ +Y+ + PN T+ + I C G A +F V PD T L+ G
Sbjct: 274 RNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITG 333
Query: 352 LVKKKKIKEA 361
K K++++
Sbjct: 334 FCKSKRVEDG 343
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 6/197 (3%)
Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244
D + L ++MEN G+ ++T +++C + A L +M K G +
Sbjct: 96 DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 155
Query: 245 ITNTYGGDPERLKE---LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301
+ G+ R +E L+D M G P+ + YN ++ CKN ++ A +V+ +E+
Sbjct: 156 LNGFCQGN--RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKK 213
Query: 302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361
G +A T+ T I L SG + A ++ ++ V P+ L++ VK+ + EA
Sbjct: 214 GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEA 273
Query: 362 KGVIR-TIKKKFPPNVL 377
+ + + I++ PNV
Sbjct: 274 RNLYKEMIRRSVVPNVF 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,154,260
Number of Sequences: 539616
Number of extensions: 6506702
Number of successful extensions: 27856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 20941
Number of HSP's gapped (non-prelim): 2669
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)