Query 015673
Match_columns 403
No_of_seqs 612 out of 1950
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 08:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-56 2.7E-61 426.7 45.5 361 23-386 435-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1E-55 2.2E-60 420.4 44.8 373 19-393 364-770 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.3E-52 9.4E-57 392.7 35.3 357 22-396 120-513 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.2E-50 2.5E-55 391.8 35.7 366 23-398 251-678 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3E-50 6.5E-55 380.2 37.1 358 21-393 83-478 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4E-49 8.7E-54 381.1 34.6 354 23-392 150-504 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-24 6.7E-29 212.0 42.5 355 22-390 462-817 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-24 1.1E-28 210.4 42.0 352 26-392 534-886 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.4E-23 5.2E-28 185.3 32.4 297 34-339 44-350 (389)
10 PRK15174 Vi polysaccharide exp 99.9 1.5E-21 3.2E-26 182.2 40.2 340 23-374 40-384 (656)
11 PRK11788 tetratricopeptide rep 99.9 9.3E-22 2E-26 175.2 34.4 297 67-371 40-347 (389)
12 PRK15174 Vi polysaccharide exp 99.9 3.5E-19 7.5E-24 166.5 38.9 331 35-374 15-350 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-20 4E-25 161.3 26.9 350 24-389 115-502 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 9.8E-19 2.1E-23 163.9 40.8 354 28-391 130-556 (615)
15 TIGR00990 3a0801s09 mitochondr 99.9 7.1E-19 1.5E-23 164.8 39.5 338 24-371 159-571 (615)
16 PRK11447 cellulose synthase su 99.9 1.1E-18 2.4E-23 174.0 40.4 333 32-373 276-702 (1157)
17 PRK10049 pgaA outer membrane p 99.9 7.7E-18 1.7E-22 160.8 40.3 346 22-376 46-461 (765)
18 PRK11447 cellulose synthase su 99.9 7.7E-18 1.7E-22 168.0 39.4 340 22-370 300-739 (1157)
19 PRK10049 pgaA outer membrane p 99.9 3.6E-17 7.8E-22 156.2 40.5 349 21-380 11-430 (765)
20 KOG4626 O-linked N-acetylgluco 99.8 3.6E-18 7.8E-23 147.4 26.2 346 26-384 49-429 (966)
21 PRK14574 hmsH outer membrane p 99.8 6.1E-16 1.3E-20 145.5 41.5 339 24-371 33-445 (822)
22 PRK14574 hmsH outer membrane p 99.8 6.5E-15 1.4E-19 138.7 39.0 337 32-376 109-518 (822)
23 PRK09782 bacteriophage N4 rece 99.8 2.7E-14 5.8E-19 137.3 40.2 324 34-372 351-707 (987)
24 KOG2076 RNA polymerase III tra 99.8 9E-15 1.9E-19 131.9 33.1 334 28-369 142-510 (895)
25 PRK09782 bacteriophage N4 rece 99.8 3.1E-14 6.8E-19 136.8 39.1 339 24-375 375-743 (987)
26 PRK10747 putative protoheme IX 99.8 1.2E-14 2.6E-19 128.4 32.1 283 75-370 97-389 (398)
27 TIGR00540 hemY_coli hemY prote 99.7 9.6E-15 2.1E-19 129.8 31.2 291 73-370 95-398 (409)
28 PF13429 TPR_15: Tetratricopep 99.7 4.5E-17 9.7E-22 137.7 13.7 259 67-334 13-275 (280)
29 TIGR00540 hemY_coli hemY prote 99.7 4.8E-14 1E-18 125.4 33.0 293 35-335 94-398 (409)
30 PRK10747 putative protoheme IX 99.7 4.6E-14 1E-18 124.8 32.1 287 38-335 97-389 (398)
31 KOG2002 TPR-containing nuclear 99.7 3.5E-14 7.6E-19 129.1 30.1 347 21-373 266-711 (1018)
32 COG2956 Predicted N-acetylgluc 99.7 6.8E-14 1.5E-18 112.0 28.2 231 28-265 39-277 (389)
33 KOG4422 Uncharacterized conser 99.7 6.5E-13 1.4E-17 110.5 34.7 347 21-375 203-594 (625)
34 PF13429 TPR_15: Tetratricopep 99.7 5.3E-17 1.1E-21 137.2 11.3 261 102-370 13-276 (280)
35 COG3071 HemY Uncharacterized e 99.7 7.1E-13 1.5E-17 109.4 31.0 286 74-370 96-389 (400)
36 COG2956 Predicted N-acetylgluc 99.7 1E-12 2.2E-17 105.4 29.1 286 73-370 46-346 (389)
37 KOG1126 DNA-binding cell divis 99.7 6.2E-14 1.3E-18 122.7 22.4 285 77-372 334-621 (638)
38 KOG4422 Uncharacterized conser 99.7 1.1E-12 2.4E-17 109.1 28.4 322 27-356 118-482 (625)
39 KOG2003 TPR repeat-containing 99.6 5.9E-13 1.3E-17 111.6 26.7 167 215-385 502-702 (840)
40 COG3071 HemY Uncharacterized e 99.6 3.9E-12 8.4E-17 105.1 31.0 292 37-340 96-394 (400)
41 KOG2002 TPR-containing nuclear 99.6 6.7E-13 1.5E-17 120.9 29.0 346 26-377 308-751 (1018)
42 KOG1126 DNA-binding cell divis 99.6 5.1E-14 1.1E-18 123.2 21.0 289 38-340 332-624 (638)
43 KOG0495 HAT repeat protein [RN 99.6 4.8E-12 1E-16 110.8 32.2 347 26-391 517-865 (913)
44 KOG2003 TPR repeat-containing 99.6 2.6E-13 5.7E-18 113.7 23.4 353 27-387 203-669 (840)
45 KOG2076 RNA polymerase III tra 99.6 8E-12 1.7E-16 113.3 32.7 342 22-369 170-553 (895)
46 KOG0547 Translocase of outer m 99.6 1E-11 2.2E-16 105.2 29.3 331 28-370 118-565 (606)
47 KOG1915 Cell cycle control pro 99.6 1.9E-10 4.1E-15 97.3 34.2 352 21-385 103-548 (677)
48 KOG1915 Cell cycle control pro 99.6 1.6E-10 3.4E-15 97.8 33.2 339 35-387 83-481 (677)
49 KOG1155 Anaphase-promoting com 99.6 7.1E-11 1.5E-15 99.5 30.2 324 27-370 166-494 (559)
50 KOG1155 Anaphase-promoting com 99.6 3.4E-11 7.4E-16 101.4 28.3 296 67-371 232-536 (559)
51 TIGR02521 type_IV_pilW type IV 99.5 2E-11 4.4E-16 100.6 26.1 200 168-371 31-232 (234)
52 PRK12370 invasion protein regu 99.5 8.2E-12 1.8E-16 115.4 25.6 248 77-337 276-536 (553)
53 KOG0495 HAT repeat protein [RN 99.5 2.9E-10 6.3E-15 99.9 32.6 346 23-386 548-894 (913)
54 TIGR02521 type_IV_pilW type IV 99.5 7.3E-12 1.6E-16 103.2 22.4 199 26-231 32-231 (234)
55 KOG1129 TPR repeat-containing 99.5 4.5E-12 9.8E-17 101.9 19.7 259 107-372 189-459 (478)
56 PRK12370 invasion protein regu 99.5 1.8E-11 4E-16 113.1 26.0 249 111-370 275-534 (553)
57 KOG1129 TPR repeat-containing 99.5 1.4E-11 3E-16 99.2 19.2 231 101-337 227-459 (478)
58 KOG1173 Anaphase-promoting com 99.5 4E-10 8.6E-15 97.4 28.4 273 98-377 245-523 (611)
59 PF12569 NARP1: NMDA receptor- 99.5 2.8E-10 6.1E-15 102.0 28.9 291 69-370 11-333 (517)
60 PF12569 NARP1: NMDA receptor- 99.4 3E-09 6.5E-14 95.5 31.9 294 30-336 9-334 (517)
61 KOG1156 N-terminal acetyltrans 99.4 1.3E-09 2.9E-14 95.7 28.4 352 20-388 70-491 (700)
62 KOG4318 Bicoid mRNA stability 99.4 5.3E-11 1.1E-15 107.8 19.4 251 47-322 12-286 (1088)
63 KOG1173 Anaphase-promoting com 99.4 9.5E-10 2E-14 95.2 26.1 277 67-353 249-533 (611)
64 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.7E-17 77.5 6.4 50 270-319 1-50 (50)
65 PRK11189 lipoprotein NlpI; Pro 99.4 1E-09 2.2E-14 93.2 25.6 151 109-264 38-192 (296)
66 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-12 4.2E-17 77.3 6.1 50 166-215 1-50 (50)
67 KOG1840 Kinesin light chain [C 99.4 3.1E-10 6.7E-15 100.5 21.6 242 58-299 195-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.3 2E-09 4.4E-14 91.3 25.7 94 100-196 67-160 (296)
69 KOG2376 Signal recognition par 99.3 3.3E-08 7.1E-13 86.3 32.8 350 26-389 13-504 (652)
70 KOG4340 Uncharacterized conser 99.3 6.8E-10 1.5E-14 88.6 20.7 332 23-370 8-374 (459)
71 KOG1840 Kinesin light chain [C 99.3 5.8E-10 1.3E-14 98.8 22.4 246 89-334 191-477 (508)
72 KOG1174 Anaphase-promoting com 99.3 1.1E-08 2.3E-13 85.5 28.2 288 39-337 210-501 (564)
73 KOG1174 Anaphase-promoting com 99.3 3.2E-08 6.9E-13 82.8 30.4 306 76-392 210-520 (564)
74 COG3063 PilF Tfp pilus assembl 99.3 1.5E-09 3.3E-14 83.5 21.1 198 28-232 38-236 (250)
75 KOG0547 Translocase of outer m 99.3 8.7E-09 1.9E-13 87.8 27.5 82 66-151 119-202 (606)
76 cd05804 StaR_like StaR_like; a 99.3 1.7E-08 3.8E-13 88.9 31.0 302 63-370 7-335 (355)
77 COG3063 PilF Tfp pilus assembl 99.3 3.1E-09 6.7E-14 81.8 22.2 208 63-276 36-244 (250)
78 KOG4318 Bicoid mRNA stability 99.3 3.1E-09 6.6E-14 96.8 24.6 247 19-287 19-286 (1088)
79 cd05804 StaR_like StaR_like; a 99.3 9.1E-08 2E-12 84.3 33.7 307 24-334 5-334 (355)
80 KOG4340 Uncharacterized conser 99.3 1.2E-08 2.5E-13 81.7 24.6 300 24-334 43-373 (459)
81 KOG0624 dsRNA-activated protei 99.3 9.7E-08 2.1E-12 78.1 28.9 304 23-337 36-371 (504)
82 KOG2047 mRNA splicing factor [ 99.2 2.5E-07 5.5E-12 81.8 32.2 193 182-376 361-584 (835)
83 KOG3785 Uncharacterized conser 99.2 8.7E-08 1.9E-12 78.7 27.3 170 32-208 29-224 (557)
84 KOG3785 Uncharacterized conser 99.2 1.3E-08 2.9E-13 83.3 22.5 327 32-375 64-493 (557)
85 KOG0548 Molecular co-chaperone 99.2 1.9E-07 4.2E-12 80.8 30.1 211 171-387 227-470 (539)
86 KOG1156 N-terminal acetyltrans 99.2 2.3E-07 5E-12 82.1 31.0 334 32-375 48-438 (700)
87 KOG4162 Predicted calmodulin-b 99.2 2.9E-07 6.2E-12 83.1 31.8 361 24-392 322-769 (799)
88 KOG2047 mRNA splicing factor [ 99.2 5.6E-07 1.2E-11 79.7 32.7 213 170-384 389-629 (835)
89 PF04733 Coatomer_E: Coatomer 99.2 2.8E-09 6.2E-14 89.1 17.9 250 69-335 8-264 (290)
90 PF04733 Coatomer_E: Coatomer 99.2 2E-09 4.4E-14 90.0 16.8 81 288-370 183-264 (290)
91 KOG1125 TPR repeat-containing 99.1 2E-08 4.4E-13 87.5 18.0 254 70-330 293-565 (579)
92 KOG4162 Predicted calmodulin-b 99.0 1.2E-06 2.6E-11 79.2 28.1 120 249-371 662-783 (799)
93 PRK04841 transcriptional regul 99.0 3.5E-06 7.5E-11 84.0 34.1 339 34-374 383-763 (903)
94 KOG0624 dsRNA-activated protei 99.0 5.7E-06 1.2E-10 68.0 27.7 277 16-302 63-371 (504)
95 KOG0548 Molecular co-chaperone 99.0 1.4E-06 2.9E-11 75.7 25.6 322 21-353 32-471 (539)
96 PRK10370 formate-dependent nit 99.0 3.2E-07 6.9E-12 72.6 19.8 162 210-388 23-188 (198)
97 KOG1125 TPR repeat-containing 99.0 2.5E-07 5.3E-12 80.9 20.2 255 103-365 291-565 (579)
98 TIGR03302 OM_YfiO outer membra 99.0 1E-07 2.2E-12 78.6 17.5 192 19-232 27-232 (235)
99 PLN02789 farnesyltranstransfer 98.9 5.5E-06 1.2E-10 70.5 27.3 131 101-235 41-174 (320)
100 KOG1070 rRNA processing protei 98.9 1.2E-06 2.6E-11 84.1 25.2 208 92-304 1453-1666(1710)
101 KOG2376 Signal recognition par 98.9 1.3E-05 2.7E-10 70.8 28.6 332 22-368 43-517 (652)
102 PRK15359 type III secretion sy 98.9 2.2E-07 4.9E-12 69.5 15.7 120 257-383 13-132 (144)
103 KOG1914 mRNA cleavage and poly 98.9 4E-05 8.6E-10 67.1 32.3 79 20-104 15-93 (656)
104 TIGR03302 OM_YfiO outer membra 98.9 7.7E-07 1.7E-11 73.3 20.0 187 166-373 31-234 (235)
105 KOG1914 mRNA cleavage and poly 98.9 4.3E-05 9.4E-10 66.8 31.9 138 253-393 347-488 (656)
106 KOG1070 rRNA processing protei 98.9 2.8E-06 6.1E-11 81.8 25.5 241 45-294 1444-1693(1710)
107 PRK04841 transcriptional regul 98.9 2.5E-05 5.4E-10 78.0 34.1 338 29-370 345-719 (903)
108 PRK14720 transcript cleavage f 98.9 3.1E-06 6.7E-11 80.3 25.2 246 16-318 22-268 (906)
109 KOG0985 Vesicle coat protein c 98.8 2.6E-05 5.6E-10 73.1 29.3 243 19-295 978-1243(1666)
110 PLN02789 farnesyltranstransfer 98.8 1.8E-05 3.8E-10 67.5 26.8 146 64-214 39-187 (320)
111 KOG1127 TPR repeat-containing 98.8 2.5E-06 5.3E-11 79.5 22.9 342 26-381 493-888 (1238)
112 KOG1128 Uncharacterized conser 98.8 4.1E-07 8.8E-12 81.7 17.4 243 18-283 391-634 (777)
113 KOG1128 Uncharacterized conser 98.8 4.7E-06 1E-10 75.2 23.5 231 101-352 402-633 (777)
114 PRK14720 transcript cleavage f 98.8 4.2E-06 9.1E-11 79.5 23.9 262 49-369 19-281 (906)
115 KOG2053 Mitochondrial inherita 98.8 0.00014 3E-09 67.5 33.2 193 35-233 19-256 (932)
116 COG5010 TadD Flp pilus assembl 98.8 2.5E-06 5.4E-11 67.6 18.7 121 173-295 105-225 (257)
117 COG5010 TadD Flp pilus assembl 98.8 3.3E-06 7.2E-11 66.9 19.2 159 66-229 70-228 (257)
118 KOG3081 Vesicle coat complex C 98.8 4.9E-06 1.1E-10 66.0 19.8 105 213-322 147-256 (299)
119 PF12854 PPR_1: PPR repeat 98.8 1.3E-08 2.8E-13 54.4 3.9 28 304-331 4-31 (34)
120 PRK15179 Vi polysaccharide bio 98.7 1.2E-06 2.5E-11 82.2 18.8 144 61-209 85-228 (694)
121 KOG3616 Selective LIM binding 98.7 3.5E-06 7.6E-11 76.1 20.6 188 143-365 743-931 (1636)
122 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.4E-13 53.7 4.0 34 336-369 1-34 (34)
123 PRK15179 Vi polysaccharide bio 98.7 6.4E-06 1.4E-10 77.3 22.8 147 92-243 81-227 (694)
124 KOG3081 Vesicle coat complex C 98.7 4.6E-05 9.9E-10 60.7 23.8 253 104-374 15-274 (299)
125 PRK10370 formate-dependent nit 98.7 5.6E-07 1.2E-11 71.2 13.3 161 32-212 23-186 (198)
126 KOG0985 Vesicle coat protein c 98.7 7.3E-05 1.6E-09 70.3 27.3 293 47-391 969-1263(1666)
127 TIGR02552 LcrH_SycD type III s 98.7 1.6E-06 3.4E-11 64.6 14.3 113 259-375 5-118 (135)
128 KOG3060 Uncharacterized conser 98.7 2.1E-05 4.6E-10 62.0 20.1 154 39-196 26-182 (289)
129 KOG3617 WD40 and TPR repeat-co 98.6 2.1E-05 4.6E-10 72.1 22.5 311 24-370 725-1108(1416)
130 COG4783 Putative Zn-dependent 98.6 4.1E-05 8.8E-10 66.3 23.0 116 108-228 317-433 (484)
131 COG4783 Putative Zn-dependent 98.6 2.6E-05 5.7E-10 67.4 21.8 141 213-376 316-459 (484)
132 PRK15359 type III secretion sy 98.6 4E-06 8.6E-11 62.8 14.2 90 139-231 31-120 (144)
133 KOG3060 Uncharacterized conser 98.6 6.5E-05 1.4E-09 59.4 20.3 187 147-337 27-221 (289)
134 KOG3616 Selective LIM binding 98.6 3.4E-05 7.4E-10 70.0 21.2 136 211-368 740-876 (1636)
135 KOG3617 WD40 and TPR repeat-co 98.5 1.6E-05 3.5E-10 72.8 17.9 250 70-369 736-994 (1416)
136 KOG2053 Mitochondrial inherita 98.5 0.00089 1.9E-08 62.5 28.9 224 72-302 19-256 (932)
137 TIGR02552 LcrH_SycD type III s 98.5 7.3E-06 1.6E-10 60.9 13.4 93 101-196 21-113 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-05 4.7E-10 68.4 15.7 115 249-369 181-295 (395)
139 PF09976 TPR_21: Tetratricopep 98.4 3.5E-05 7.7E-10 57.9 15.0 124 241-368 15-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.7E-05 3.6E-10 69.0 14.2 124 101-231 173-296 (395)
141 PF09976 TPR_21: Tetratricopep 98.3 1.9E-05 4.1E-10 59.4 11.9 115 38-156 24-142 (145)
142 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.2E-05 1.3E-09 54.4 13.5 104 274-377 4-111 (119)
143 cd00189 TPR Tetratricopeptide 98.2 2.9E-05 6.3E-10 53.4 11.2 95 275-371 3-97 (100)
144 PRK10866 outer membrane biogen 98.2 0.00026 5.7E-09 58.0 18.0 57 173-229 180-238 (243)
145 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.1E-11 46.1 4.6 33 274-306 2-34 (35)
146 KOG0550 Molecular chaperone (D 98.2 0.00024 5.2E-09 60.3 17.6 275 103-387 55-367 (486)
147 COG4235 Cytochrome c biogenesi 98.2 0.00018 4E-09 58.8 15.8 114 269-386 153-269 (287)
148 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.4E-11 45.4 4.2 33 273-305 2-34 (34)
149 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.2E-11 45.8 4.2 33 170-202 2-34 (35)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 5.1E-05 1.1E-09 54.9 11.7 101 27-127 4-106 (119)
151 PF10037 MRP-S27: Mitochondria 98.2 7E-05 1.5E-09 65.6 14.1 123 198-320 61-186 (429)
152 PF14938 SNAP: Soluble NSF att 98.2 0.00017 3.6E-09 61.0 16.1 93 140-232 122-225 (282)
153 KOG0553 TPR repeat-containing 98.2 3.5E-05 7.6E-10 62.5 11.1 85 249-335 93-177 (304)
154 PF13812 PPR_3: Pentatricopept 98.2 5.1E-06 1.1E-10 44.7 4.5 32 205-236 3-34 (34)
155 PF12688 TPR_5: Tetratrico pep 98.2 9.2E-05 2E-09 52.8 11.9 111 28-143 4-117 (120)
156 KOG0550 Molecular chaperone (D 98.1 0.0015 3.2E-08 55.7 20.0 298 28-356 52-371 (486)
157 PLN03088 SGT1, suppressor of 98.1 0.00014 2.9E-09 63.6 14.8 87 249-337 14-100 (356)
158 PF12895 Apc3: Anaphase-promot 98.1 6.8E-06 1.5E-10 55.2 5.3 81 285-367 2-83 (84)
159 PRK15363 pathogenicity island 98.1 8.7E-05 1.9E-09 54.9 11.3 95 67-163 40-134 (157)
160 PRK15363 pathogenicity island 98.1 0.00015 3.2E-09 53.7 12.2 94 276-371 39-132 (157)
161 PF12895 Apc3: Anaphase-promot 98.1 8.1E-06 1.8E-10 54.8 5.3 81 38-122 2-83 (84)
162 KOG1127 TPR repeat-containing 98.1 0.00026 5.7E-09 66.6 16.2 183 78-265 474-658 (1238)
163 PRK02603 photosystem I assembl 98.1 0.00012 2.5E-09 57.0 12.1 86 26-112 36-121 (172)
164 PF10037 MRP-S27: Mitochondria 98.1 8.8E-05 1.9E-09 65.0 12.2 132 154-285 50-186 (429)
165 PLN03088 SGT1, suppressor of 98.0 0.00011 2.4E-09 64.2 12.3 96 28-127 5-100 (356)
166 PRK02603 photosystem I assembl 98.0 0.00055 1.2E-08 53.2 14.7 101 274-375 37-153 (172)
167 cd00189 TPR Tetratricopeptide 98.0 0.00012 2.7E-09 50.1 10.1 58 171-229 37-94 (100)
168 CHL00033 ycf3 photosystem I as 97.9 0.00026 5.6E-09 54.8 12.1 63 63-125 36-100 (168)
169 PF08579 RPM2: Mitochondrial r 97.9 0.00021 4.5E-09 49.1 9.6 76 279-354 32-116 (120)
170 PF13525 YfiO: Outer membrane 97.9 0.00096 2.1E-08 53.3 15.3 64 27-90 7-70 (203)
171 PF05843 Suf: Suppressor of fo 97.9 0.00034 7.4E-09 58.9 13.3 128 170-300 3-135 (280)
172 CHL00033 ycf3 photosystem I as 97.9 0.00026 5.7E-09 54.8 11.5 113 78-192 15-137 (168)
173 PF14938 SNAP: Soluble NSF att 97.9 0.0037 8E-08 52.9 19.3 122 247-370 123-262 (282)
174 PRK10866 outer membrane biogen 97.9 0.0094 2E-07 49.0 22.6 179 171-369 35-239 (243)
175 PF13432 TPR_16: Tetratricopep 97.9 0.0001 2.2E-09 46.6 7.4 60 313-373 3-62 (65)
176 PF01535 PPR: PPR repeat; Int 97.9 2.3E-05 5.1E-10 41.0 3.7 29 274-302 2-30 (31)
177 PF08579 RPM2: Mitochondrial r 97.8 0.00034 7.4E-09 48.1 9.5 76 173-248 30-114 (120)
178 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.5E-10 40.5 3.6 28 205-232 2-29 (31)
179 PF13414 TPR_11: TPR repeat; P 97.8 0.00013 2.9E-09 46.7 7.3 64 306-370 2-66 (69)
180 PF05843 Suf: Suppressor of fo 97.8 0.00033 7.2E-09 59.0 11.4 78 151-231 55-135 (280)
181 PF14559 TPR_19: Tetratricopep 97.8 9.6E-05 2.1E-09 47.2 6.2 56 318-374 2-57 (68)
182 COG4700 Uncharacterized protei 97.8 0.0054 1.2E-07 46.5 15.7 120 66-188 93-213 (251)
183 KOG2280 Vacuolar assembly/sort 97.8 0.027 5.8E-07 52.1 22.9 314 28-365 440-793 (829)
184 PRK10803 tol-pal system protei 97.8 0.00085 1.9E-08 55.5 12.8 101 274-376 145-251 (263)
185 KOG2041 WD40 repeat protein [G 97.7 0.027 5.9E-07 51.7 22.3 127 39-191 748-875 (1189)
186 PRK10153 DNA-binding transcrip 97.7 0.0022 4.7E-08 58.8 16.2 61 169-231 421-481 (517)
187 KOG0553 TPR repeat-containing 97.7 0.00043 9.2E-09 56.4 10.1 96 73-173 92-187 (304)
188 PRK10803 tol-pal system protei 97.7 0.00087 1.9E-08 55.5 12.2 99 27-127 145-247 (263)
189 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.03 6.4E-07 48.7 25.8 144 244-393 403-551 (660)
190 PRK10153 DNA-binding transcrip 97.7 0.0013 2.9E-08 60.1 13.7 59 99-159 422-480 (517)
191 COG4105 ComL DNA uptake lipopr 97.7 0.018 3.9E-07 46.4 18.1 189 26-232 35-233 (254)
192 KOG2796 Uncharacterized conser 97.7 0.014 3.1E-07 46.9 17.1 131 100-232 180-315 (366)
193 PF14559 TPR_19: Tetratricopep 97.6 0.00026 5.6E-09 45.2 6.4 63 179-244 2-64 (68)
194 PF06239 ECSIT: Evolutionarily 97.6 0.00099 2.1E-08 51.9 10.3 87 271-357 46-153 (228)
195 PF12688 TPR_5: Tetratrico pep 97.6 0.0035 7.6E-08 44.8 12.1 90 278-368 7-101 (120)
196 KOG1585 Protein required for f 97.6 0.0052 1.1E-07 48.7 13.7 208 26-261 32-251 (308)
197 PF04840 Vps16_C: Vps16, C-ter 97.6 0.041 9E-07 47.1 23.5 105 240-364 179-284 (319)
198 PF13525 YfiO: Outer membrane 97.6 0.014 3.1E-07 46.6 16.8 65 63-127 6-72 (203)
199 PRK15331 chaperone protein Sic 97.5 0.011 2.3E-07 44.3 14.2 86 283-370 48-133 (165)
200 PF04840 Vps16_C: Vps16, C-ter 97.5 0.048 1E-06 46.7 24.1 108 205-332 179-287 (319)
201 PF06239 ECSIT: Evolutionarily 97.5 0.0032 6.8E-08 49.2 11.7 104 166-287 45-153 (228)
202 PF13432 TPR_16: Tetratricopep 97.5 0.00061 1.3E-08 43.0 6.8 59 278-337 3-61 (65)
203 PF13414 TPR_11: TPR repeat; P 97.5 0.00086 1.9E-08 42.9 7.3 65 167-232 2-67 (69)
204 KOG2796 Uncharacterized conser 97.4 0.043 9.3E-07 44.2 22.1 139 170-311 179-323 (366)
205 COG4235 Cytochrome c biogenesi 97.4 0.0051 1.1E-07 50.6 12.6 116 92-212 151-269 (287)
206 COG4700 Uncharacterized protei 97.3 0.045 9.8E-07 41.7 16.7 158 103-265 62-225 (251)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0016 3.4E-08 42.2 7.0 57 315-372 3-59 (73)
208 PF07079 DUF1347: Protein of u 97.3 0.11 2.4E-06 45.4 32.2 80 288-369 437-522 (549)
209 PRK15331 chaperone protein Sic 97.2 0.032 6.9E-07 41.9 13.8 94 240-335 40-133 (165)
210 COG1729 Uncharacterized protei 97.2 0.012 2.6E-07 47.8 12.6 100 27-127 144-245 (262)
211 PF12921 ATP13: Mitochondrial 97.2 0.0083 1.8E-07 43.4 10.5 102 272-393 2-104 (126)
212 PF03704 BTAD: Bacterial trans 97.2 0.011 2.4E-07 44.4 11.9 71 170-241 64-139 (146)
213 PF13281 DUF4071: Domain of un 97.2 0.12 2.5E-06 44.9 18.9 18 249-266 317-334 (374)
214 COG3898 Uncharacterized membra 97.2 0.12 2.6E-06 44.3 31.2 59 309-369 331-390 (531)
215 PF13371 TPR_9: Tetratricopept 97.2 0.0046 9.9E-08 40.0 8.1 57 176-233 3-59 (73)
216 PF03704 BTAD: Bacterial trans 97.2 0.0054 1.2E-07 46.1 9.6 71 274-345 64-139 (146)
217 PF12921 ATP13: Mitochondrial 97.2 0.0058 1.3E-07 44.2 9.1 98 97-215 2-100 (126)
218 PF13281 DUF4071: Domain of un 97.1 0.14 3.1E-06 44.4 19.5 33 340-372 303-335 (374)
219 KOG1130 Predicted G-alpha GTPa 97.1 0.011 2.5E-07 50.5 12.0 131 204-334 196-342 (639)
220 KOG1130 Predicted G-alpha GTPa 97.0 0.017 3.7E-07 49.5 11.5 122 249-370 207-343 (639)
221 COG4649 Uncharacterized protei 97.0 0.091 2E-06 39.6 13.7 128 33-161 66-196 (221)
222 COG1729 Uncharacterized protei 97.0 0.03 6.5E-07 45.6 12.4 103 274-377 144-250 (262)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.013 2.9E-07 51.4 10.5 68 21-90 71-140 (453)
224 PF13424 TPR_12: Tetratricopep 96.9 0.0047 1E-07 40.5 6.2 63 169-231 6-74 (78)
225 PF13424 TPR_12: Tetratricopep 96.9 0.0038 8.2E-08 41.0 5.7 61 309-369 7-73 (78)
226 KOG1538 Uncharacterized conser 96.8 0.084 1.8E-06 48.2 15.1 192 120-334 623-844 (1081)
227 KOG2041 WD40 repeat protein [G 96.8 0.036 7.7E-07 51.0 12.9 239 94-370 689-951 (1189)
228 PF13428 TPR_14: Tetratricopep 96.8 0.0035 7.6E-08 35.7 4.6 41 343-384 2-42 (44)
229 KOG0543 FKBP-type peptidyl-pro 96.8 0.16 3.5E-06 43.8 15.8 140 210-371 215-355 (397)
230 PF13512 TPR_18: Tetratricopep 96.8 0.043 9.3E-07 40.2 10.8 84 25-108 10-93 (142)
231 PF10300 DUF3808: Protein of u 96.8 0.17 3.6E-06 46.3 17.1 162 206-370 191-375 (468)
232 PF13512 TPR_18: Tetratricopep 96.7 0.088 1.9E-06 38.6 11.9 123 236-376 9-133 (142)
233 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.42 9E-06 42.0 20.0 131 203-336 397-531 (660)
234 COG4105 ComL DNA uptake lipopr 96.6 0.28 6E-06 39.8 20.9 179 177-375 43-237 (254)
235 PF04053 Coatomer_WDAD: Coatom 96.6 0.04 8.6E-07 49.5 11.8 99 108-228 329-427 (443)
236 COG3898 Uncharacterized membra 96.6 0.43 9.3E-06 41.1 27.7 239 110-363 97-350 (531)
237 COG3118 Thioredoxin domain-con 96.5 0.13 2.9E-06 42.4 13.2 154 68-226 140-295 (304)
238 PF08631 SPO22: Meiosis protei 96.5 0.4 8.7E-06 40.5 22.8 17 316-332 255-271 (278)
239 PF09205 DUF1955: Domain of un 96.5 0.11 2.3E-06 37.2 10.9 63 135-199 89-151 (161)
240 PF10300 DUF3808: Protein of u 96.4 0.15 3.3E-06 46.5 14.4 164 66-232 192-376 (468)
241 PF04184 ST7: ST7 protein; In 96.4 0.27 5.9E-06 43.8 15.0 114 276-392 263-378 (539)
242 COG3118 Thioredoxin domain-con 96.4 0.46 9.9E-06 39.4 15.2 172 69-248 110-282 (304)
243 PF08631 SPO22: Meiosis protei 96.3 0.54 1.2E-05 39.8 23.9 21 350-370 254-274 (278)
244 KOG1585 Protein required for f 96.3 0.42 9E-06 38.4 14.5 90 275-365 153-250 (308)
245 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.039 8.5E-07 48.6 9.4 65 270-336 73-141 (453)
246 KOG0543 FKBP-type peptidyl-pro 96.3 0.077 1.7E-06 45.7 10.8 94 281-375 217-324 (397)
247 PF04053 Coatomer_WDAD: Coatom 96.2 0.13 2.9E-06 46.3 12.4 159 69-262 268-427 (443)
248 PF04184 ST7: ST7 protein; In 96.1 0.85 1.8E-05 40.8 16.7 166 29-210 172-338 (539)
249 smart00299 CLH Clathrin heavy 96.1 0.37 8.1E-06 35.8 13.3 41 68-109 13-53 (140)
250 KOG1258 mRNA processing protei 96.1 1.1 2.5E-05 40.9 26.8 103 271-375 296-398 (577)
251 COG4785 NlpI Lipoprotein NlpI, 96.0 0.54 1.2E-05 37.1 18.5 178 203-389 99-284 (297)
252 KOG4555 TPR repeat-containing 95.9 0.21 4.6E-06 35.7 9.9 93 32-127 50-145 (175)
253 PF13170 DUF4003: Protein of u 95.9 0.38 8.3E-06 40.8 13.4 132 185-317 79-227 (297)
254 KOG2114 Vacuolar assembly/sort 95.8 0.93 2E-05 43.2 16.3 187 21-229 330-516 (933)
255 KOG2610 Uncharacterized conser 95.8 0.43 9.4E-06 40.2 12.6 154 142-299 113-274 (491)
256 PF13428 TPR_14: Tetratricopep 95.7 0.044 9.6E-07 31.1 5.0 35 310-345 4-38 (44)
257 COG4785 NlpI Lipoprotein NlpI, 95.6 0.82 1.8E-05 36.1 12.9 65 95-160 97-161 (297)
258 KOG1538 Uncharacterized conser 95.6 0.64 1.4E-05 42.9 14.0 199 10-232 620-846 (1081)
259 PF02259 FAT: FAT domain; Int 95.6 1.5 3.2E-05 38.6 22.0 65 271-335 145-212 (352)
260 COG0457 NrfG FOG: TPR repeat [ 95.6 0.99 2.1E-05 36.5 28.0 87 282-370 177-264 (291)
261 KOG2114 Vacuolar assembly/sort 95.5 0.43 9.4E-06 45.2 12.9 176 100-299 337-517 (933)
262 PRK11906 transcriptional regul 95.5 0.74 1.6E-05 41.0 13.8 148 40-193 273-432 (458)
263 PF09205 DUF1955: Domain of un 95.4 0.65 1.4E-05 33.4 12.1 62 171-233 89-150 (161)
264 KOG4555 TPR repeat-containing 95.4 0.66 1.4E-05 33.3 10.7 52 179-231 54-105 (175)
265 PRK11906 transcriptional regul 95.1 1.1 2.4E-05 39.9 13.8 159 204-368 252-433 (458)
266 KOG3941 Intermediate in Toll s 95.1 0.23 5.1E-06 40.7 8.9 105 200-322 64-173 (406)
267 KOG3941 Intermediate in Toll s 95.1 0.25 5.4E-06 40.5 9.0 46 324-369 140-186 (406)
268 KOG1258 mRNA processing protei 95.1 2.7 5.9E-05 38.6 27.7 352 27-390 81-488 (577)
269 PF07035 Mic1: Colon cancer-as 95.0 1.1 2.5E-05 34.1 14.1 99 188-298 14-115 (167)
270 COG2909 MalT ATP-dependent tra 94.9 3.9 8.5E-05 39.6 23.1 227 106-332 424-684 (894)
271 KOG2610 Uncharacterized conser 94.9 1 2.2E-05 38.1 12.1 151 74-228 115-272 (491)
272 COG3629 DnrI DNA-binding trans 94.9 0.4 8.7E-06 39.9 10.0 78 273-351 154-236 (280)
273 PF10602 RPN7: 26S proteasome 94.7 0.45 9.8E-06 37.0 9.5 63 169-231 37-101 (177)
274 smart00299 CLH Clathrin heavy 94.6 1.3 2.9E-05 32.8 15.3 40 174-214 13-52 (140)
275 PF10345 Cohesin_load: Cohesin 94.5 4.6 0.0001 38.7 30.3 186 43-229 39-251 (608)
276 KOG1941 Acetylcholine receptor 94.5 2.8 6E-05 36.1 14.4 121 249-369 134-273 (518)
277 PF02284 COX5A: Cytochrome c o 94.5 0.97 2.1E-05 30.8 10.1 65 311-375 12-78 (108)
278 PF13431 TPR_17: Tetratricopep 94.5 0.055 1.2E-06 28.7 2.8 32 330-362 2-33 (34)
279 PF00637 Clathrin: Region in C 94.5 0.0047 1E-07 46.3 -2.0 132 28-184 10-141 (143)
280 KOG1941 Acetylcholine receptor 94.4 1.9 4.2E-05 37.0 12.8 166 134-299 85-273 (518)
281 PF10602 RPN7: 26S proteasome 94.4 0.32 6.9E-06 37.8 7.9 98 63-160 37-141 (177)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.57 1.2E-05 31.5 7.5 49 324-372 24-72 (103)
283 PF13174 TPR_6: Tetratricopept 94.1 0.13 2.8E-06 26.7 3.9 30 345-374 3-32 (33)
284 COG3629 DnrI DNA-binding trans 94.1 0.97 2.1E-05 37.7 10.6 79 98-177 154-236 (280)
285 COG0457 NrfG FOG: TPR repeat [ 94.1 2.5 5.4E-05 34.0 26.7 223 111-337 37-266 (291)
286 PF09613 HrpB1_HrpK: Bacterial 94.0 2 4.4E-05 32.3 13.4 51 249-301 22-73 (160)
287 PF07719 TPR_2: Tetratricopept 93.8 0.28 6.1E-06 25.6 4.8 30 343-372 2-31 (34)
288 PF13176 TPR_7: Tetratricopept 93.6 0.21 4.6E-06 26.7 4.2 26 344-369 1-26 (36)
289 PF13176 TPR_7: Tetratricopept 93.4 0.24 5.2E-06 26.5 4.1 26 205-230 1-26 (36)
290 COG4649 Uncharacterized protei 93.4 2.7 5.8E-05 32.0 13.6 18 351-368 176-193 (221)
291 COG2976 Uncharacterized protei 93.2 3.2 6.9E-05 32.4 15.1 128 239-375 55-192 (207)
292 COG2976 Uncharacterized protei 93.2 3 6.4E-05 32.5 10.9 90 103-198 95-189 (207)
293 COG1747 Uncharacterized N-term 93.0 6.8 0.00015 35.5 19.4 95 131-231 65-159 (711)
294 PF07079 DUF1347: Protein of u 92.9 6.5 0.00014 35.1 22.7 140 32-179 13-178 (549)
295 KOG1920 IkappaB kinase complex 92.8 12 0.00026 37.8 21.5 107 207-333 943-1052(1265)
296 PF00515 TPR_1: Tetratricopept 92.7 0.53 1.2E-05 24.6 4.9 27 344-370 3-29 (34)
297 PRK11619 lytic murein transgly 92.7 9.9 0.00022 36.6 27.8 315 31-370 39-374 (644)
298 PF07163 Pex26: Pex26 protein; 92.6 4.2 9.1E-05 33.7 11.6 130 26-155 36-181 (309)
299 PF13170 DUF4003: Protein of u 92.4 6.3 0.00014 33.6 18.0 130 219-350 78-225 (297)
300 KOG4570 Uncharacterized conser 92.3 1.1 2.3E-05 37.6 8.0 97 63-161 65-164 (418)
301 PF04097 Nic96: Nup93/Nic96; 92.1 11 0.00025 36.0 19.0 89 279-369 421-532 (613)
302 KOG4234 TPR repeat-containing 92.1 4.8 0.0001 31.6 11.1 87 249-337 107-198 (271)
303 KOG0890 Protein kinase of the 92.1 21 0.00046 39.1 24.7 153 30-192 1388-1542(2382)
304 KOG2280 Vacuolar assembly/sort 92.1 11 0.00024 35.9 24.3 292 66-369 441-771 (829)
305 PF13929 mRNA_stabil: mRNA sta 91.9 6.7 0.00015 32.8 14.4 97 131-227 163-262 (292)
306 PF09613 HrpB1_HrpK: Bacterial 91.8 4.5 9.7E-05 30.5 12.4 18 249-266 56-73 (160)
307 KOG4570 Uncharacterized conser 91.6 3.9 8.4E-05 34.5 10.4 49 251-299 114-162 (418)
308 KOG1550 Extracellular protein 91.6 13 0.00027 35.3 21.3 179 113-302 228-427 (552)
309 KOG1550 Extracellular protein 91.5 13 0.00027 35.3 25.3 178 41-233 228-427 (552)
310 PF11207 DUF2989: Protein of u 91.4 3 6.5E-05 32.8 9.2 79 282-362 117-198 (203)
311 PF13431 TPR_17: Tetratricopep 91.3 0.3 6.5E-06 25.8 2.7 24 304-327 10-33 (34)
312 KOG1920 IkappaB kinase complex 91.2 18 0.0004 36.6 22.8 54 278-334 971-1026(1265)
313 PF07719 TPR_2: Tetratricopept 91.1 0.39 8.5E-06 25.0 3.2 29 27-55 3-31 (34)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.7 5.9E-05 28.4 7.3 48 252-299 22-69 (103)
315 KOG0276 Vesicle coat complex C 90.7 3.4 7.3E-05 38.1 10.1 72 144-231 649-720 (794)
316 PF00515 TPR_1: Tetratricopept 90.7 0.76 1.6E-05 24.0 4.0 28 99-126 3-30 (34)
317 KOG0276 Vesicle coat complex C 90.6 7.1 0.00015 36.2 11.9 151 36-229 597-747 (794)
318 PRK15180 Vi polysaccharide bio 90.6 11 0.00023 34.0 12.7 119 145-267 302-421 (831)
319 COG3947 Response regulator con 90.3 9.8 0.00021 31.9 16.4 61 309-370 281-341 (361)
320 COG1747 Uncharacterized N-term 90.3 14 0.00031 33.6 20.9 182 91-282 60-249 (711)
321 TIGR03504 FimV_Cterm FimV C-te 90.0 1.5 3.2E-05 24.8 4.9 24 348-371 5-28 (44)
322 PF13374 TPR_10: Tetratricopep 89.9 1.1 2.3E-05 24.6 4.5 29 342-370 2-30 (42)
323 PF11207 DUF2989: Protein of u 89.7 3.8 8.3E-05 32.2 8.5 80 107-188 117-198 (203)
324 KOG4234 TPR repeat-containing 89.7 3.7 7.9E-05 32.2 8.2 88 72-160 105-196 (271)
325 PF07035 Mic1: Colon cancer-as 89.7 7.7 0.00017 29.7 14.1 24 91-114 23-46 (167)
326 KOG4648 Uncharacterized conser 89.6 2.2 4.8E-05 36.3 7.6 84 249-335 109-193 (536)
327 PF11846 DUF3366: Domain of un 89.5 3.9 8.5E-05 32.3 9.0 44 338-381 140-183 (193)
328 PRK15180 Vi polysaccharide bio 89.3 16 0.00035 32.9 15.0 124 175-302 296-421 (831)
329 KOG2066 Vacuolar assembly/sort 89.2 22 0.00047 34.3 23.8 52 339-390 687-749 (846)
330 KOG2063 Vacuolar assembly/sort 89.1 25 0.00055 34.9 17.8 167 204-370 505-712 (877)
331 KOG0686 COP9 signalosome, subu 88.5 17 0.00036 32.1 12.8 59 100-158 153-213 (466)
332 PF13374 TPR_10: Tetratricopep 88.4 1.4 3E-05 24.1 4.3 25 170-194 4-28 (42)
333 KOG1464 COP9 signalosome, subu 88.2 13 0.00029 30.7 20.8 187 37-226 39-254 (440)
334 KOG4507 Uncharacterized conser 87.7 3.3 7.3E-05 38.0 7.9 86 74-160 619-704 (886)
335 COG4455 ImpE Protein of avirul 87.4 6.1 0.00013 31.5 8.2 74 242-316 5-81 (273)
336 PF00637 Clathrin: Region in C 87.3 0.19 4.1E-06 37.6 0.1 84 68-158 13-96 (143)
337 PF13181 TPR_8: Tetratricopept 87.2 2.3 5E-05 22.0 4.4 28 343-370 2-29 (34)
338 KOG4077 Cytochrome c oxidase, 87.2 8.1 0.00017 27.7 7.9 51 325-375 67-117 (149)
339 PF07721 TPR_4: Tetratricopept 87.1 1 2.2E-05 21.9 2.7 21 346-366 5-25 (26)
340 TIGR03504 FimV_Cterm FimV C-te 86.3 1.9 4.2E-05 24.3 3.8 24 278-301 5-28 (44)
341 PF06552 TOM20_plant: Plant sp 85.6 5.9 0.00013 30.6 7.2 108 41-159 7-134 (186)
342 PF13181 TPR_8: Tetratricopept 85.6 2.8 6E-05 21.7 4.2 26 171-196 4-29 (34)
343 PF02284 COX5A: Cytochrome c o 85.3 9.9 0.00021 26.1 9.5 47 186-232 28-74 (108)
344 COG2909 MalT ATP-dependent tra 84.9 42 0.0009 33.1 25.2 221 143-367 426-684 (894)
345 PF13174 TPR_6: Tetratricopept 84.9 1.1 2.4E-05 22.9 2.4 27 29-55 4-30 (33)
346 KOG0687 26S proteasome regulat 84.2 26 0.00056 30.0 12.9 94 204-299 105-208 (393)
347 PF13929 mRNA_stabil: mRNA sta 84.1 24 0.00052 29.7 16.2 65 268-332 198-263 (292)
348 cd00280 TRFH Telomeric Repeat 83.5 19 0.00041 28.0 11.2 67 288-357 85-158 (200)
349 PF08424 NRDE-2: NRDE-2, neces 83.0 31 0.00067 30.0 16.7 140 257-398 51-217 (321)
350 KOG0128 RNA-binding protein SA 83.0 49 0.0011 32.3 23.1 195 28-231 116-340 (881)
351 PF10579 Rapsyn_N: Rapsyn N-te 82.6 6 0.00013 25.7 5.2 46 319-364 18-65 (80)
352 PF08424 NRDE-2: NRDE-2, neces 82.6 32 0.00069 29.9 13.7 62 80-143 49-110 (321)
353 PRK09687 putative lyase; Provi 82.5 29 0.00064 29.4 26.3 59 305-370 204-262 (280)
354 smart00028 TPR Tetratricopepti 82.0 2.9 6.3E-05 20.5 3.4 26 345-370 4-29 (34)
355 PF10579 Rapsyn_N: Rapsyn N-te 82.0 2.4 5.1E-05 27.5 3.2 45 74-118 18-64 (80)
356 COG4455 ImpE Protein of avirul 81.3 17 0.00036 29.2 8.2 78 274-352 3-82 (273)
357 PF06552 TOM20_plant: Plant sp 81.2 21 0.00046 27.7 8.6 108 253-371 7-136 (186)
358 PRK10941 hypothetical protein; 81.1 25 0.00055 29.5 9.9 56 139-196 188-243 (269)
359 TIGR02561 HrpB1_HrpK type III 80.9 21 0.00045 26.7 12.5 52 249-302 22-74 (153)
360 PF02259 FAT: FAT domain; Int 80.7 39 0.00084 29.6 21.2 191 68-265 4-212 (352)
361 PF07163 Pex26: Pex26 protein; 80.6 33 0.00071 28.8 10.1 87 279-365 90-181 (309)
362 KOG4648 Uncharacterized conser 80.4 11 0.00023 32.4 7.4 53 141-196 106-159 (536)
363 smart00386 HAT HAT (Half-A-TPR 80.4 4.9 0.00011 20.2 3.9 29 356-385 1-29 (33)
364 KOG0686 COP9 signalosome, subu 80.1 43 0.00092 29.7 12.6 95 62-158 150-255 (466)
365 KOG4642 Chaperone-dependent E3 79.6 32 0.0007 28.1 10.0 109 29-141 14-126 (284)
366 TIGR02561 HrpB1_HrpK type III 78.8 25 0.00054 26.3 13.3 51 283-337 21-74 (153)
367 COG5159 RPN6 26S proteasome re 78.7 38 0.00083 28.4 15.0 19 278-296 131-149 (421)
368 PF09670 Cas_Cas02710: CRISPR- 78.0 47 0.001 29.7 11.2 55 211-266 139-198 (379)
369 KOG2659 LisH motif-containing 77.3 37 0.0008 27.5 10.5 18 281-298 73-90 (228)
370 PF10345 Cohesin_load: Cohesin 77.3 72 0.0016 30.8 31.5 168 26-194 60-251 (608)
371 KOG3807 Predicted membrane pro 76.1 50 0.0011 28.4 11.8 63 137-199 280-342 (556)
372 PF13762 MNE1: Mitochondrial s 76.1 30 0.00065 25.8 10.0 29 256-284 99-127 (145)
373 KOG2471 TPR repeat-containing 75.6 66 0.0014 29.5 12.7 51 28-80 20-70 (696)
374 KOG4507 Uncharacterized conser 74.7 35 0.00075 31.9 9.4 91 282-373 617-707 (886)
375 KOG0376 Serine-threonine phosp 74.0 9.9 0.00021 34.2 5.8 97 249-350 16-113 (476)
376 KOG2034 Vacuolar sorting prote 73.9 98 0.0021 30.7 25.8 177 29-229 362-556 (911)
377 KOG0991 Replication factor C, 73.4 49 0.0011 27.0 11.4 39 200-239 236-274 (333)
378 KOG0376 Serine-threonine phosp 72.5 12 0.00025 33.8 5.9 111 27-143 6-116 (476)
379 PF04190 DUF410: Protein of un 72.2 57 0.0012 27.3 15.2 14 320-333 154-167 (260)
380 COG0790 FOG: TPR repeat, SEL1 72.0 61 0.0013 27.5 20.1 17 109-125 53-69 (292)
381 PF14689 SPOB_a: Sensor_kinase 71.9 13 0.00028 22.9 4.5 30 341-370 22-51 (62)
382 PHA02875 ankyrin repeat protei 71.9 49 0.0011 29.9 10.2 209 107-342 9-230 (413)
383 PF07064 RIC1: RIC1; InterPro 71.8 58 0.0013 27.2 12.4 27 27-53 84-110 (258)
384 PF09670 Cas_Cas02710: CRISPR- 71.5 76 0.0016 28.4 11.3 57 175-232 138-198 (379)
385 PF04910 Tcf25: Transcriptiona 71.4 74 0.0016 28.2 18.0 55 280-334 111-166 (360)
386 PF14853 Fis1_TPR_C: Fis1 C-te 71.0 18 0.00038 21.5 4.7 30 346-375 5-34 (53)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 70.8 38 0.00082 24.6 8.4 43 325-367 81-124 (126)
388 KOG4077 Cytochrome c oxidase, 70.3 38 0.00083 24.5 7.3 43 257-299 69-111 (149)
389 PF14689 SPOB_a: Sensor_kinase 70.2 12 0.00027 23.0 4.2 23 312-334 28-50 (62)
390 KOG0687 26S proteasome regulat 70.1 71 0.0015 27.5 13.7 98 168-265 104-209 (393)
391 PF11848 DUF3368: Domain of un 70.1 19 0.0004 20.8 4.8 28 285-312 15-42 (48)
392 COG5187 RPN7 26S proteasome re 69.8 68 0.0015 27.1 11.7 102 272-375 115-225 (412)
393 PF00244 14-3-3: 14-3-3 protei 69.6 62 0.0013 26.6 10.4 40 174-213 7-46 (236)
394 KOG1308 Hsp70-interacting prot 69.4 4.2 9.2E-05 34.7 2.5 92 73-168 125-217 (377)
395 KOG0275 Conserved WD40 repeat- 68.9 49 0.0011 28.1 8.4 120 277-400 12-137 (508)
396 PF07575 Nucleopor_Nup85: Nup8 68.8 1.1E+02 0.0024 29.2 18.8 61 272-334 405-465 (566)
397 KOG1586 Protein required for f 68.7 64 0.0014 26.4 18.0 22 214-235 165-186 (288)
398 PF11846 DUF3366: Domain of un 68.7 23 0.00049 28.0 6.5 33 200-232 141-173 (193)
399 KOG2066 Vacuolar assembly/sort 68.6 98 0.0021 30.2 11.1 102 69-180 363-467 (846)
400 KOG0292 Vesicle coat complex C 68.6 70 0.0015 31.7 10.2 177 38-266 606-782 (1202)
401 PF13762 MNE1: Mitochondrial s 68.5 47 0.001 24.8 10.0 81 65-145 42-128 (145)
402 COG0735 Fur Fe2+/Zn2+ uptake r 68.2 47 0.001 24.9 7.6 48 260-308 9-56 (145)
403 PF13934 ELYS: Nuclear pore co 67.7 67 0.0014 26.2 14.8 106 100-217 79-186 (226)
404 PF09986 DUF2225: Uncharacteri 66.3 33 0.00072 27.7 7.0 26 102-127 170-195 (214)
405 PRK10564 maltose regulon perip 66.1 15 0.00033 31.0 5.0 33 97-129 257-289 (303)
406 PRK09687 putative lyase; Provi 66.1 83 0.0018 26.7 27.6 135 202-352 141-277 (280)
407 COG3947 Response regulator con 65.5 85 0.0018 26.7 16.0 147 185-335 150-341 (361)
408 PF10255 Paf67: RNA polymerase 64.4 1.1E+02 0.0024 27.6 11.7 61 170-230 124-191 (404)
409 PF04910 Tcf25: Transcriptiona 64.4 1E+02 0.0023 27.3 20.2 56 210-265 110-167 (360)
410 KOG4642 Chaperone-dependent E3 64.4 80 0.0017 26.0 10.6 116 74-192 22-141 (284)
411 KOG2062 26S proteasome regulat 64.1 1.5E+02 0.0032 29.0 12.5 183 78-266 39-239 (929)
412 PF09454 Vps23_core: Vps23 cor 64.0 14 0.00029 23.1 3.4 49 305-354 6-54 (65)
413 PF11848 DUF3368: Domain of un 63.3 27 0.00058 20.1 5.0 35 316-350 11-45 (48)
414 PRK10564 maltose regulon perip 62.5 17 0.00037 30.7 4.8 41 165-205 253-294 (303)
415 PF12862 Apc5: Anaphase-promot 62.5 46 0.00099 22.5 6.5 19 281-299 50-68 (94)
416 PF13934 ELYS: Nuclear pore co 62.4 85 0.0018 25.6 15.5 114 232-356 73-186 (226)
417 PRK10941 hypothetical protein; 62.3 96 0.0021 26.2 10.2 56 315-371 189-244 (269)
418 PF12862 Apc5: Anaphase-promot 61.7 47 0.001 22.5 6.7 53 179-231 9-69 (94)
419 PF11817 Foie-gras_1: Foie gra 61.5 41 0.00089 27.9 7.0 24 30-53 15-38 (247)
420 PF00244 14-3-3: 14-3-3 protei 61.0 93 0.002 25.6 9.7 60 207-266 5-66 (236)
421 PRK13341 recombination factor 60.7 1.8E+02 0.0039 28.8 15.7 35 238-272 259-293 (725)
422 PRK13341 recombination factor 60.7 1.8E+02 0.0039 28.8 18.9 151 198-361 192-352 (725)
423 PF11663 Toxin_YhaV: Toxin wit 60.7 12 0.00026 27.3 3.1 21 251-271 109-129 (140)
424 PF04190 DUF410: Protein of un 60.6 1E+02 0.0022 25.9 17.0 82 167-266 89-170 (260)
425 KOG3807 Predicted membrane pro 60.2 1.1E+02 0.0025 26.4 13.1 58 278-337 281-341 (556)
426 KOG1464 COP9 signalosome, subu 59.7 1E+02 0.0023 25.8 22.5 158 74-231 39-219 (440)
427 cd00280 TRFH Telomeric Repeat 59.4 57 0.0012 25.5 6.6 47 79-125 86-139 (200)
428 COG4259 Uncharacterized protei 59.1 50 0.0011 22.7 5.5 49 327-375 57-105 (121)
429 cd00245 Glm_e Coenzyme B12-dep 59.0 40 0.00087 30.4 6.7 153 182-342 25-202 (428)
430 KOG2471 TPR repeat-containing 58.9 86 0.0019 28.8 8.5 109 69-180 247-381 (696)
431 COG5108 RPO41 Mitochondrial DN 58.6 1.3E+02 0.0029 28.9 9.9 74 243-319 33-115 (1117)
432 KOG4567 GTPase-activating prot 58.5 1.2E+02 0.0026 26.0 10.2 71 257-332 263-343 (370)
433 COG0735 Fur Fe2+/Zn2+ uptake r 58.5 57 0.0012 24.4 6.6 48 101-148 24-71 (145)
434 COG0790 FOG: TPR repeat, SEL1 58.4 1.2E+02 0.0025 25.9 22.1 45 290-337 173-221 (292)
435 PF14853 Fis1_TPR_C: Fis1 C-te 58.3 37 0.0008 20.1 5.0 24 278-301 7-30 (53)
436 KOG3364 Membrane protein invol 58.1 73 0.0016 23.5 9.7 70 304-373 29-102 (149)
437 KOG4814 Uncharacterized conser 57.7 1.2E+02 0.0025 29.1 9.3 95 239-335 356-456 (872)
438 KOG2062 26S proteasome regulat 57.7 1.9E+02 0.0042 28.2 18.7 173 67-248 64-253 (929)
439 KOG1308 Hsp70-interacting prot 57.5 12 0.00027 32.0 3.2 122 244-370 121-243 (377)
440 KOG1839 Uncharacterized protei 57.3 1.5E+02 0.0032 31.0 10.7 126 71-196 941-1085(1236)
441 TIGR02508 type_III_yscG type I 57.0 63 0.0014 22.4 7.7 14 249-262 51-64 (115)
442 KOG1586 Protein required for f 56.7 1.1E+02 0.0024 25.1 20.7 21 283-303 165-185 (288)
443 PF07575 Nucleopor_Nup85: Nup8 56.6 1.9E+02 0.0041 27.7 17.9 94 273-370 373-466 (566)
444 PF11663 Toxin_YhaV: Toxin wit 56.3 12 0.00026 27.3 2.5 31 354-387 107-138 (140)
445 KOG4567 GTPase-activating prot 56.1 81 0.0017 27.0 7.4 43 153-196 264-306 (370)
446 PHA02537 M terminase endonucle 55.8 1.1E+02 0.0025 25.0 8.3 18 355-372 191-208 (230)
447 PF11817 Foie-gras_1: Foie gra 55.5 64 0.0014 26.8 7.1 20 103-122 16-35 (247)
448 PF03745 DUF309: Domain of unk 55.2 48 0.001 20.5 5.4 47 73-119 10-61 (62)
449 COG5187 RPN7 26S proteasome re 54.4 1.4E+02 0.003 25.5 11.4 98 167-264 114-219 (412)
450 COG4259 Uncharacterized protei 53.7 71 0.0015 22.0 5.8 45 81-125 56-100 (121)
451 KOG4521 Nuclear pore complex, 53.0 2.9E+02 0.0063 28.8 12.9 195 173-376 925-1136(1480)
452 cd08819 CARD_MDA5_2 Caspase ac 52.6 68 0.0015 21.5 5.7 9 185-193 53-61 (88)
453 KOG2063 Vacuolar assembly/sort 52.5 2.7E+02 0.0058 28.2 15.6 130 77-215 493-638 (877)
454 PRK08691 DNA polymerase III su 51.2 2.4E+02 0.0051 27.8 10.7 29 241-269 249-277 (709)
455 COG5191 Uncharacterized conser 50.4 47 0.001 28.4 5.3 76 271-348 106-182 (435)
456 KOG0991 Replication factor C, 50.4 1.4E+02 0.0031 24.5 12.3 37 269-306 236-272 (333)
457 PF15297 CKAP2_C: Cytoskeleton 50.0 1.8E+02 0.0039 25.5 9.6 62 289-352 120-185 (353)
458 PRK12798 chemotaxis protein; R 49.8 2E+02 0.0043 26.0 18.0 210 189-400 98-316 (421)
459 COG5108 RPO41 Mitochondrial DN 49.5 1.4E+02 0.003 28.8 8.5 75 67-144 33-115 (1117)
460 PF07678 A2M_comp: A-macroglob 49.2 84 0.0018 26.1 6.9 80 289-370 116-220 (246)
461 PF09454 Vps23_core: Vps23 cor 48.7 52 0.0011 20.6 4.2 50 269-319 5-54 (65)
462 PRK13342 recombination factor 48.0 2.2E+02 0.0047 25.9 18.8 166 185-368 154-331 (413)
463 PRK14958 DNA polymerase III su 47.2 2.5E+02 0.0055 26.4 10.9 93 149-244 181-286 (509)
464 PF09797 NatB_MDM20: N-acetylt 46.7 2.1E+02 0.0046 25.4 21.1 56 252-308 198-253 (365)
465 PF11838 ERAP1_C: ERAP1-like C 45.8 2E+02 0.0043 24.8 15.2 79 185-266 147-230 (324)
466 PF09868 DUF2095: Uncharacteri 45.6 1E+02 0.0023 21.7 5.5 27 317-344 71-97 (128)
467 PRK07003 DNA polymerase III su 45.5 3.3E+02 0.0071 27.3 13.7 82 151-235 183-277 (830)
468 KOG2422 Uncharacterized conser 45.5 2.7E+02 0.0059 26.4 16.9 51 249-299 354-405 (665)
469 PRK13184 pknD serine/threonine 45.3 3.6E+02 0.0078 27.7 24.8 92 30-126 480-581 (932)
470 PF04762 IKI3: IKI3 family; I 45.1 3.7E+02 0.008 27.8 15.1 22 67-88 699-720 (928)
471 cd08819 CARD_MDA5_2 Caspase ac 45.1 93 0.002 20.8 6.9 65 291-361 21-85 (88)
472 PF15297 CKAP2_C: Cytoskeleton 44.7 2.2E+02 0.0047 25.0 9.2 64 253-318 119-186 (353)
473 KOG3677 RNA polymerase I-assoc 44.6 2.4E+02 0.0052 25.5 12.7 60 171-231 238-300 (525)
474 KOG2422 Uncharacterized conser 44.6 2.8E+02 0.0061 26.3 17.4 132 169-300 285-447 (665)
475 PF10475 DUF2450: Protein of u 44.2 2.1E+02 0.0044 24.6 10.5 20 202-221 196-215 (291)
476 PF10366 Vps39_1: Vacuolar sor 43.4 1.1E+02 0.0025 21.4 7.3 27 309-335 41-67 (108)
477 PF01347 Vitellogenin_N: Lipop 43.1 3.2E+02 0.0069 26.5 18.3 197 65-266 349-569 (618)
478 smart00638 LPD_N Lipoprotein N 42.8 3.1E+02 0.0068 26.3 23.1 199 61-266 309-525 (574)
479 COG4976 Predicted methyltransf 42.4 59 0.0013 26.5 4.6 61 281-343 4-64 (287)
480 KOG3364 Membrane protein invol 42.3 1.4E+02 0.003 22.1 8.8 52 249-301 47-100 (149)
481 KOG3636 Uncharacterized conser 41.9 2.7E+02 0.0059 25.3 12.0 88 265-353 176-271 (669)
482 PF12926 MOZART2: Mitotic-spin 41.8 1.1E+02 0.0023 20.5 7.9 43 189-231 29-71 (88)
483 KOG3636 Uncharacterized conser 40.9 2.8E+02 0.0061 25.2 14.3 89 230-319 175-272 (669)
484 TIGR02508 type_III_yscG type I 40.7 1.2E+02 0.0027 21.0 8.9 54 316-375 48-101 (115)
485 smart00777 Mad3_BUB1_I Mad3/BU 39.8 1.5E+02 0.0032 21.6 9.5 43 324-366 80-123 (125)
486 PF12926 MOZART2: Mitotic-spin 39.1 1.2E+02 0.0025 20.3 8.1 43 328-370 29-71 (88)
487 cd07153 Fur_like Ferric uptake 38.6 1.1E+02 0.0023 21.6 5.3 47 278-324 6-52 (116)
488 PF02607 B12-binding_2: B12 bi 38.4 58 0.0013 21.0 3.6 23 249-271 13-35 (79)
489 COG4003 Uncharacterized protei 38.3 1.1E+02 0.0025 20.0 5.1 29 315-344 39-67 (98)
490 PF03745 DUF309: Domain of unk 38.2 97 0.0021 19.1 5.6 14 285-298 12-25 (62)
491 PF05944 Phage_term_smal: Phag 37.8 1.6E+02 0.0035 21.6 7.4 21 282-302 58-78 (132)
492 PRK11639 zinc uptake transcrip 37.7 1.9E+02 0.0041 22.3 7.8 67 289-356 8-74 (169)
493 KOG2300 Uncharacterized conser 37.4 3.4E+02 0.0075 25.2 26.1 360 28-393 91-544 (629)
494 PRK09857 putative transposase; 37.3 2.7E+02 0.0058 23.9 9.5 54 284-338 218-271 (292)
495 cd07153 Fur_like Ferric uptake 37.3 87 0.0019 22.0 4.7 47 103-149 6-52 (116)
496 PF10493 Rod_C: Rough deal pro 37.1 3.8E+02 0.0082 25.6 11.2 96 296-391 345-450 (551)
497 PF12793 SgrR_N: Sugar transpo 37.0 1.5E+02 0.0033 21.1 8.2 72 154-227 5-94 (115)
498 PF10366 Vps39_1: Vacuolar sor 36.9 1.5E+02 0.0032 20.8 7.8 26 100-125 42-67 (108)
499 PHA02875 ankyrin repeat protei 36.5 3.2E+02 0.007 24.6 12.0 212 70-307 7-230 (413)
500 PF04097 Nic96: Nup93/Nic96; 36.4 4.1E+02 0.0089 25.8 21.6 87 209-301 264-356 (613)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-56 Score=426.68 Aligned_cols=361 Identities=22% Similarity=0.302 Sum_probs=346.5
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
|+..+|+.++.+|++.|++++|.++|+.|.+.++.| +..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p--D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 788999999999999999999999999999999655 889999999999999999999999999999899999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh-CCCCCchHHHHHHHHHHHhc
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK-YNLSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 181 (403)
+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999753 47899999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI 260 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~ 260 (403)
|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++ +.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Q 015673 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVLRAWKKVEEE 386 (403)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 386 (403)
|..+|+.++.+|++.|++++|.+++++|.+. +.|+.. .++.++..
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~-tynsLIgl 798 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV-MCRCITGL 798 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 9999999999999999999999999999874 666644 67777654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-55 Score=420.43 Aligned_cols=373 Identities=17% Similarity=0.288 Sum_probs=344.6
Q ss_pred CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCC------------------------------cchhhHHHH
Q 015673 19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV------------------------------SSRYAQDLT 68 (403)
Q Consensus 19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~------------------------------~~~~~~~~l 68 (403)
.+..++...+..++..+++.|++++|+++|++|.+.++.+. ++..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 33445566788888888888888888888888888774321 466788999
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
+.+|++.|+++.|.++|+.|...+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN--KGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
++|.++|+.|.+. |+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999766 9999999999999999999999999999999976 578999999999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673 227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (403)
+.|.+.|+.|+..+|+.++.+| +.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCchhHHHHHHHH
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVE 384 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 384 (403)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +..||.. .|..++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 4677765 888899
Q ss_pred HHhCCCCCC
Q 015673 385 EELGLVPAP 393 (403)
Q Consensus 385 ~~~~~~~~~ 393 (403)
.+|...++.
T Consensus 762 ~a~~k~G~l 770 (1060)
T PLN03218 762 VASERKDDA 770 (1060)
T ss_pred HHHHHCCCH
Confidence 988877664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-52 Score=392.72 Aligned_cols=357 Identities=19% Similarity=0.258 Sum_probs=299.5
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
.|+..+|+.++.++.+.++++.|.+++..|.+.+..| +..+|+.++..|++.|+++.|.++|++|.. ++..+|+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP--DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 3556666666666666666666666666666666444 555666666666666666666666666642 4555666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC-----------------------------------CCcHHHHHHHHHHHHhcC
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGT-----------------------------------PRSVISFNALLFACTRSR 146 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------------------~~~~~~~~~ll~~~~~~~ 146 (403)
.++.+|++.|++++|+++|++|.+.|+ .||..+|+.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 666666666666666666666655544 455556678888899999
Q ss_pred CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 274 ~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 274 DIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999854 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673 227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (403)
..|.+.|+.|+..+++.++..| +.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999 9999999999999986 4689999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVM-VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE 384 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 384 (403)
|..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|. ..|+.. .|+.|+
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~-~~~~Ll 501 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVN-MWAALL 501 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHH-HHHHHH
Confidence 999999999999999999999999999986 5899999999999999999999999999998874 566654 899999
Q ss_pred HHhCCCCCCCCC
Q 015673 385 EELGLVPAPAVG 396 (403)
Q Consensus 385 ~~~~~~~~~~~~ 396 (403)
.+|..+++.+.|
T Consensus 502 ~a~~~~g~~~~a 513 (697)
T PLN03081 502 TACRIHKNLELG 513 (697)
T ss_pred HHHHHcCCcHHH
Confidence 999998876544
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-50 Score=391.81 Aligned_cols=366 Identities=17% Similarity=0.223 Sum_probs=227.9
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
++..+|+.++.+|.+.|++++|+++|++|...++.| +..+|+.++.++++.|+++.+.+++..+...+..|+..+|+.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P--d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP--DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 344555555555555555555555555555555433 444455555555555555555555555544444455555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
|+.+|++.|++++|.++|+.|.. ||..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccc
Confidence 55555555555555555555433 44445555555555555555555555555333 45555555555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK------------------------------ 232 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------ 232 (403)
+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555544444444444444444444444444444444443221
Q ss_pred CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC------------------------------CCChhcHHHHHHH
Q 015673 233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL------------------------------KPDTISYNFLMTC 281 (403)
Q Consensus 233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~ 281 (403)
++.||..+|+.++.++ ..|+.+.+.+++..+.+.|+ .||..+||+++.+
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~ 563 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTG 563 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHH
Confidence 1233333333333322 22222222222222222221 4566778888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015673 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESV-MVHKIPDFNTVKLLVEGLVKKKKIKE 360 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 360 (403)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999 67999999999999999999999999
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCCCCCCC
Q 015673 361 AKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDG 398 (403)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 398 (403)
|.+++++|. ..|+.. .|.+|+.+|..+++.+.|+.
T Consensus 644 A~~~~~~m~--~~pd~~-~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 644 AYNFINKMP--ITPDPA-VWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HHHHHHHCC--CCCCHH-HHHHHHHHHHHcCChHHHHH
Confidence 999999995 677754 99999999999998776543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-50 Score=380.25 Aligned_cols=358 Identities=18% Similarity=0.213 Sum_probs=325.2
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
...+..+|+.++..+.+.|++++|+++|++|...+. ..++..+|+.++.++.+.++++.+.+++..+...+..|+..++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 344566899999999999999999999999987652 1247889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD------------- 167 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 167 (403)
+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |+.|+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhc
Confidence 9999999999999999999999976 89999999999999999999999999999765 55555
Q ss_pred ----------------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 168 ----------------------KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 168 ----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
..+|+.++.+|++.|++++|.++|+.|.. +|..+|++++.+|++.|++++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 44557778888889999999999998854 5889999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
|++|.+.|+.||..+|+.++.++ ..|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999987 4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCchhHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK--KFPPNVLRAWKK 382 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ 382 (403)
||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ +..|+.. .|+.
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-~y~~ 467 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HYAC 467 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-chHh
Confidence 788999999999999999999999999999999999999999999999999999999999999976 4667654 8899
Q ss_pred HHHHhCCCCCC
Q 015673 383 VEEELGLVPAP 393 (403)
Q Consensus 383 l~~~~~~~~~~ 393 (403)
|+..++..+..
T Consensus 468 li~~l~r~G~~ 478 (697)
T PLN03081 468 MIELLGREGLL 478 (697)
T ss_pred HHHHHHhcCCH
Confidence 99988887764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-49 Score=381.12 Aligned_cols=354 Identities=18% Similarity=0.164 Sum_probs=229.5
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
|+..+|+.++.+|.+.|++++|+++|++|...++.| +..+|+.++.+++..+++..+.+++..+...+..++..+++.
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P--d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP--DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 455566666666666666666666666666655444 555556666666666666666666666655555566666666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
|+.+|++.|+++.|.++|+.|.. ||..+|+.+|.+|++.|++++|+++|.+|.+. |+.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcC
Confidence 66666666666666666666654 56666666666666666666666666666544 66666666666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID 261 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~ 261 (403)
+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.++ +.|++++|.++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666664 34566666666666 6666666666666
Q ss_pred HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673 262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341 (403)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (403)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .+|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666664 245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
..+|+.++.+|++.|+.++|..+|++|.+...||.. ++..++.+|...++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~-t~~~lL~a~~~~g~ 504 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV-TLIAALSACARIGA 504 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh-HHHHHHHHHhhhch
Confidence 566666666777777777777777777666666654 56666666555444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.1e-24 Score=211.99 Aligned_cols=355 Identities=14% Similarity=0.049 Sum_probs=265.5
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
+.++..+..++..+...|++++|.+.|+++.+.. |. +...+..++..+...|++++|.+.++++.. ..+.+...+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 537 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PD-FFPAAANLARIDIQEGNPDDAIQRFEKVLT-IDPKNLRAIL 537 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHH
Confidence 3445667777788888888888888888887766 43 344556677777888888888888888764 3445566677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (403)
.+...+.+.|++++|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+ ..+.+...|..+..++...
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHc
Confidence 788888888888888888888776554 3566777788888888888888888888865 4455677788888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI 260 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~ 260 (403)
|++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+ ..|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887753 3466677788888888888888888888887753 23355555666566 778888888888
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
+.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 8887764 4456677777888888888888888888888763 455677777888888888888888888888765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCC
Q 015673 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV 390 (403)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (403)
+...+..+...|...|++++|.+.|+++.+..|++ ...+..+...+...
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLEL 817 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhc
Confidence 77888888888888888888888888888755544 44666665554443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.1e-24 Score=210.43 Aligned_cols=352 Identities=11% Similarity=0.045 Sum_probs=219.9
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+...|++++|+..|+++...+ |. +...+..++..+...|++++|..+++.+.. ..+.+...|..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN--PQ-EIEPALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGR 609 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHH
Confidence 344444445555555555555555554444 22 223344455555555666666666655542 23344455556666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
++...|++++|+..|+.+.+... .+...+..+..++.+.|++++|..+|+++.+ ..+.+..++..++..+...|+++
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666655432 2455555666666666666666666666654 22334556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR 264 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~ 264 (403)
+|.++++.+.+.+ +.+...+..+..++...|++++|...|+.+...+ |+...+..+...+ ..|++++|.+.++.+.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666553 3455666666677777777777777777776653 3334444444455 6777777777777776
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (403)
+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|+..++++.+.. +.++.+
T Consensus 764 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~ 839 (899)
T TIGR02917 764 KTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAI 839 (899)
T ss_pred HhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHH
Confidence 653 3456677777777777788888888888777664 4566777777777777777 77888887777654 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 345 VKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
+..+..++...|++++|.+.++++.+..+. ....+..+...+...++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 777778888888888888888888875444 34466666666555443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.4e-23 Score=185.33 Aligned_cols=297 Identities=15% Similarity=0.103 Sum_probs=141.3
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC---HHHHHHHHHHHhcc
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ---EPYLCNLIRSYGQA 110 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 110 (403)
.+...|++++|+..|+++.+.+ |. +..++..++..+...|++++|..+++.+...+..+. ...+..++..|.+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445566666666666666555 32 334455555566666666666666665553221111 12344555556666
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHHHHHHHHHhcCChHHH
Q 015673 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 187 (403)
|++++|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 666666666666655322 24455555556666666666666666655443111111 11233444455555555555
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+.......++.+...+ ..|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 2233444455555555555555555555555432111122333333333 444444444444444433
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhCCCC
Q 015673 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG---SGNFDKAYKVFKESVMVHKI 339 (403)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 339 (403)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++.+.++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 233333344444444444444444444444433 3444444444433332 23444444444444444333
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.5e-21 Score=182.21 Aligned_cols=340 Identities=10% Similarity=-0.037 Sum_probs=270.5
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
.+......++..+.+.|++++|+.+++...... |.+ ...+..++.+....|++++|...++++.. ..|.+...+..
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~ 115 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNG-RDLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLL 115 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHH
Confidence 344556777888999999999999999999988 554 34455667778889999999999999984 45566777888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
+...+...|++++|+..|+++.+..+ .+...+..+...+...|++++|...++.+... .+.+...+..+ ..+...|
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKS 191 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcC
Confidence 99999999999999999999988653 36778889999999999999999999988653 22233333333 3478899
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHH----HH
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPER----LK 257 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~----a~ 257 (403)
++++|...++.+.+....++...+..+..++...|++++|...+++....... +...+..+-..+ ..|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 99999999999877643344455566678899999999999999999987432 344444444445 8888885 89
Q ss_pred HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
..++...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..++++...+
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998864 3356788899999999999999999999999874 4456677888899999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
+.+...+..+..++...|++++|...|++..+..|.
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 333344555677899999999999999999875443
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.3e-22 Score=175.16 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=243.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHH
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS---VISFNALLFACT 143 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~ 143 (403)
.....+...|++++|...|+++... .+.+...+..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKV-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999853 455667788899999999999999999999987543222 256788899999
Q ss_pred hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hhhHHHHHHHHHhcCCH
Q 015673 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT----TVTYTTVLNCLYKQGNA 219 (403)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~ 219 (403)
+.|++++|..+|+++.+ ..+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++
T Consensus 119 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999976 3445678899999999999999999999999988643322 22456677888999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 220 EEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298 (403)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 298 (403)
++|...|+++.+... .+...+..+...+ ..|++++|.++++++.+.+......+++.++.+|...|++++|...++.+
T Consensus 197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988642 2344555555556 89999999999999987642222456788999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHh
Q 015673 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK---KKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 371 (403)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 887 467677788999999999999999999998875 4888888888887775 56899999999999863
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.5e-19 Score=166.46 Aligned_cols=331 Identities=11% Similarity=0.008 Sum_probs=259.3
Q ss_pred hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
+.++.+++.---.|....+..-...........++..+.+.|++++|..+++.... ..+.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~-~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL-TAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH-hCCCchhHHHHHhhhHhhcCCHH
Confidence 34555666555555544433211122333345667788899999999999999985 44455566667778888899999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
+|+..|+++....+. +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999987653 6778888999999999999999999999852 3445678888999999999999999999988
Q ss_pred HhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh
Q 015673 195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI 273 (403)
Q Consensus 195 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (403)
..... .+...+..+ ..+...|++++|...++.+.+....++......+...+ ..|++++|...++.+.+.. +.+..
T Consensus 171 ~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 76533 233344333 34788999999999999988764334444444444555 8999999999999999874 33567
Q ss_pred cHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDE----AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (403)
.+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|+..+++..... +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999986 899999999874 4467789999999999999999999999999876 55677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
.++.+.|++++|...++++.+..|.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999875443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-20 Score=161.26 Aligned_cols=350 Identities=16% Similarity=0.115 Sum_probs=240.0
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH----
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY---- 99 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 99 (403)
-..+|..+.+.+...|++++|+.+++.+++.. |. ...+|..+..++...|+.+.|.+.|....+- .|.....
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~-fida~inla~al~~~~~~~~a~~~~~~alql-nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PK-FIDAYINLAAALVTQGDLELAVQCFFEALQL-NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--ch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-Ccchhhhhcch
Confidence 34678889999999999999999999999988 43 6677778888888888888888888777642 2211122
Q ss_pred ------------------------------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC
Q 015673 100 ------------------------------LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149 (403)
Q Consensus 100 ------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 149 (403)
|..|.-.+-..|+...|++.|++..+.++. -..+|..|...|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 333333344445555555555555543321 2445555555555556666
Q ss_pred cHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 150 KVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 150 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
+|...|.+... ..|+ ...+..+...|...|+++.|+..+++..+. .+.-...|+.|..++-..|++.+|.+.+.+
T Consensus 270 ~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 270 RAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 66665555542 2232 344555555566667777777777776664 222356777888888888888888888877
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (403)
.+..... .....+.+-..+ ..|.++.|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+.. .|+
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 7775322 233444444555 777888888888777664 333 346778888888888888888888888865 555
Q ss_pred -HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 307 -ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 307 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
...|+.+...|-..|+.+.|+..+.+.+..+ +.-.+.++.|...|-.+|+..+|+.-++...+ ..||...++..++.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-LKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-cCCCCchhhhHHHH
Confidence 4578888888888999999999998888655 33357788889999999999999999999887 77776667766665
Q ss_pred HhCC
Q 015673 386 ELGL 389 (403)
Q Consensus 386 ~~~~ 389 (403)
+..+
T Consensus 499 ~lq~ 502 (966)
T KOG4626|consen 499 CLQI 502 (966)
T ss_pred HHHH
Confidence 5544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=9.8e-19 Score=163.87 Aligned_cols=354 Identities=14% Similarity=0.080 Sum_probs=222.1
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
+......+.+.|++++|+..|++++... | +...|..+..+|...|++++|++.++.... ..+.....+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--P--DPVYYSNRAACHNALGDWEKVVEDTTAALE-LDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--chHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 4456788899999999999999999877 5 345678889999999999999999999885 4556677788899999
Q ss_pred hccCCHHHHHHHHHHHHhCCCC-----------------------------CcHHHHHHHHH------------------
Q 015673 108 GQAGMFDHAMRTFDQMDELGTP-----------------------------RSVISFNALLF------------------ 140 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~-----------------------------~~~~~~~~ll~------------------ 140 (403)
...|++++|+..|..+...+.. ++...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766544321100 00000000000
Q ss_pred ------------HH------HhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 015673 141 ------------AC------TRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV 201 (403)
Q Consensus 141 ------------~~------~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (403)
.. ...+++++|...|+...+.....| +...++.+...+...|++++|+..|++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00 012356667777777665322223 34556667777777777777777777776642 22
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHH
Q 015673 202 TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280 (403)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 280 (403)
+...|..+..++...|++++|...|+++.+... .+...+..+-..+ ..|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 345666777777777777777777777766532 2233444444444 6777777777777777653 224555666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH---H---HHHHHHHHHHh
Q 015673 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF---N---TVKLLVEGLVK 354 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~---~~~~l~~~~~~ 354 (403)
++.+.|++++|+..|+...+.. +.+...+..+...+...|++++|++.|++.+......+. . .+......+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 7777777777777777766542 334566667777777777777777777776654311111 0 11111222333
Q ss_pred cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 355 KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
.|++++|.+++++..+. .|+....|..+...+...+
T Consensus 521 ~~~~~eA~~~~~kAl~l-~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 521 KQDFIEAENLCEKALII-DPECDIAVATMAQLLLQQG 556 (615)
T ss_pred hhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcc
Confidence 57777777777776653 3444445555555444333
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=7.1e-19 Score=164.83 Aligned_cols=338 Identities=11% Similarity=0.032 Sum_probs=257.0
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC-------
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ------- 96 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 96 (403)
++..|..+...+...|++++|++.++.+++.+ |. ...++..+..++...|++++|...|..+.......+
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELD--PD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45678888999999999999999999999988 54 556778899999999999999876654321111000
Q ss_pred -------------------------HHHHHHH---------------------------HHHH------hccCCHHHHHH
Q 015673 97 -------------------------EPYLCNL---------------------------IRSY------GQAGMFDHAMR 118 (403)
Q Consensus 97 -------------------------~~~~~~l---------------------------~~~~------~~~~~~~~A~~ 118 (403)
......+ +... ...+++++|++
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 0000000 0000 12357899999
Q ss_pred HHHHHHhCC-C-CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 119 TFDQMDELG-T-PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 119 ~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
.|+...+.+ . +.....++.+...+...|++++|+..|++..+. .+.+...|..+...+...|++++|...|+++.+
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998764 1 224567888888899999999999999999753 233466888999999999999999999999988
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc
Q 015673 197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS 274 (403)
Q Consensus 197 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (403)
.. +.+...|..+..++...|++++|...|++..+.. |+ ...+..+...+ ..|++++|...|+...+.. +.+...
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~ 469 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV 469 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence 63 4467889999999999999999999999999874 44 33344444444 8999999999999998763 335778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT------TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLL 348 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (403)
++.+...+...|++++|...|+...+.....+.. .++..+..+...|++++|.+++++.+..+ +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 8999999999999999999999988763211111 12222233444799999999999988765 4556678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 015673 349 VEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
...+.+.|++++|.+.|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.1e-18 Score=173.98 Aligned_cols=333 Identities=10% Similarity=-0.001 Sum_probs=243.3
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC-CHHHH----------
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT-QEPYL---------- 100 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------- 100 (403)
...+...|++++|+..|+++++.+ |. +..++..+...+.+.|++++|+..|++........ ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 556677899999999999999987 54 56677888999999999999999999987533222 11111
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH-----
Q 015673 101 --CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL----- 173 (403)
Q Consensus 101 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----- 173 (403)
......+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++.+. .+.+...+..
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 22345677889999999999999887543 6677888888999999999999999998753 1222222222
Q ss_pred -------------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 015673 174 -------------------------------------LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216 (403)
Q Consensus 174 -------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 216 (403)
+...+...|++++|.+.|++..+.. +-+...+..+..+|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2334556789999999999988863 33667788889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC------------------------------
Q 015673 217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA------------------------------ 266 (403)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~------------------------------ 266 (403)
|++++|...++++.+.........+...+.....++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999988753222222222211111445555554444332110
Q ss_pred ---------CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 267 ---------GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 267 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
..+.+...+..+...+.+.|++++|+..|+.+.+.. +.+...+..++..+...|++++|++.++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 013345566778888899999999999999998874 5567888899999999999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
+.+..++..+..++...|++++|.++++++.+..+
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 45567777788899999999999999999987543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=7.7e-18 Score=160.79 Aligned_cols=346 Identities=11% Similarity=0.040 Sum_probs=248.7
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
+.+...+..+...+...|++++|+++|+.+++.. |. +...+..++..+...|++++|...++++... .+.+.. +.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~ 120 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LL 120 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HH
Confidence 3444567888889999999999999999998887 54 3455667888889999999999999998753 555556 87
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH-------------------------
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD------------------------- 156 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------- 156 (403)
.+..++...|++++|+..++++.+..+. +...+..+..++...+..+.|+..++
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888999999999999999999886643 55555666666666666555544444
Q ss_pred ---------------------HchhhCCCCCchH-HHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHH
Q 015673 157 ---------------------EIPKKYNLSPDKI-SYG----LLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTV 209 (403)
Q Consensus 157 ---------------------~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 209 (403)
.+.+.....|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 3332211122211 111 1123445678899999999998877532 222 22235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-----------CCC---
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDL---DVAAYNVRITNT-YGGDPERLKELIDEMRDAGL-----------KPD--- 271 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-----------~~~--- 271 (403)
..+|...|++++|+..|+++.+..... .......+..++ ..|++++|..+++.+..... .|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 678889999999999999887653211 122333444445 88999999999998886521 112
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++|++.+++++... |.+...+......
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence 1234556778888999999999999988764 5567788888889999999999999999988765 5557777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCchh
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
+...|++++|..+++++.+..|.+.
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999998666553
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=7.7e-18 Score=167.99 Aligned_cols=340 Identities=11% Similarity=-0.011 Sum_probs=248.2
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcch-hhH------------HHHHHHHHhcCCcchHHHHHHHh
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR-YAQ------------DLTVRRLAKSKRFSDIETLIESH 88 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~ 88 (403)
|.+...+..+...+.+.|++++|+..|+++.+.. |.... ..+ ......+.+.|++++|...|+++
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678888999999999999999999999877 43221 111 12355677899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH------------------------------
Q 015673 89 KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL------------------------------ 138 (403)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------------------------ 138 (403)
... .+.+...+..+..++...|++++|++.|+++.+.... +...+..+
T Consensus 378 l~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 853 4556667778999999999999999999999875432 33333222
Q ss_pred ------------HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH
Q 015673 139 ------------LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY 206 (403)
Q Consensus 139 ------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (403)
...+...|++++|+..|++..+. .+-+...+..+...|.+.|++++|...++++.+.. +.+...+
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 23345678889999999998763 33456778889999999999999999999988752 2234433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCchHHHHHHHhh
Q 015673 207 TTVLNCLYKQGNAEEAERLWSEMEKK---------------------------------------GVDLDVAAYNVRITN 247 (403)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~ 247 (403)
..+...+...++.++|+..++.+... ..+.+...+..+...
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence 33333444455555555444432110 012233333344444
Q ss_pred h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 015673 248 T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326 (403)
Q Consensus 248 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 326 (403)
+ ..|++++|+..|+...+.. +.+...+..++..|...|++++|.+.++.+.+.. +.+...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence 4 8899999999999999874 3467788999999999999999999999888753 34556677788889999999999
Q ss_pred HHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 327 YKVFKESVMVHKI--P---DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 327 ~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+++++++..... | +...+..+...+...|++++|...+++...
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875422 2 224666678899999999999999999874
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.6e-17 Score=156.21 Aligned_cols=349 Identities=12% Similarity=0.028 Sum_probs=252.7
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
.+.++.-....+..+...|+.++|+++|+...... |. ....+..+...+...|++++|..+|++... ..|.+...+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~ 86 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QL-PARGYAAVAVAYRNLKQWQNSLTLWQKALS-LEPQNDDYQ 86 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 34455567777888899999999999999998755 32 455578889999999999999999999874 455666777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..++.++...|++++|+..++++.+..+. +.. +..+..++...|+.++|+..++++.+. .+.+...+..+..++..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999886543 556 888889999999999999999999863 33345555556666666
Q ss_pred cCChHHHHHHHH----------------------------------------------HHHhC-CCCCchh-hHH----H
Q 015673 181 SGSSDKALELLN----------------------------------------------EMENK-GVEVTTV-TYT----T 208 (403)
Q Consensus 181 ~~~~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~ 208 (403)
.+..+.|++.++ .+.+. ...|+.. .+. .
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 666555444443 33322 1112211 111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCC---ChhcHHHHHHHHH
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKKGVD-LDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKP---DTISYNFLMTCYC 283 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 283 (403)
.+.++...|++++|+..|+.+.+.+.. |+..... +...+ ..|++++|+..|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456778999999999998887532 3322222 23344 8899999999999987653111 1234555666788
Q ss_pred hcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673 284 KNEMMDEAKKVYEGLEENGC-----------SPN---ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (403)
+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999998886521 123 2245566778888999999999999988765 66788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhHHHH
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAW 380 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 380 (403)
..+...|++++|++.+++..+.. |+....+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~ 430 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE-PRNINLE 430 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC-CCChHHH
Confidence 99999999999999999998854 4543333
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-18 Score=147.40 Aligned_cols=346 Identities=12% Similarity=0.017 Sum_probs=192.0
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCC-------------------------------CcchhhHHHHHHHHHh
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASP-------------------------------VSSRYAQDLTVRRLAK 74 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p-------------------------------~~~~~~~~~l~~~~~~ 74 (403)
.....+...+.+.|++.+|.+.-...-..+..- +.-..+|..+...+..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 345667777788889999888766555444110 1123345556666666
Q ss_pred cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHH-HHHHHHHHhcCCcCcHHH
Q 015673 75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF-NALLFACTRSRLYDKVPI 153 (403)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~ 153 (403)
.|++++|+.+++.+.. ..+...+.|..+..++...|+.+.|.+.|....+.+ |+.... ..+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aie-l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIE-LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHh-cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 6777777777776663 344455566667777777777777777766666533 433322 222233333555666665
Q ss_pred HHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
.|.+.++. .+-=...|+.|...+-..|+...|++.|++..+.. +.-...|..|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 55555432 11123445566666666677777777777776642 112455666666666666666666666666554
Q ss_pred CCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673 234 VDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF 310 (403)
Q Consensus 234 ~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (403)
.|+ ...+..+...| .+|+.+.|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.|.+..... +......
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 222 22333333333 666666666666666654 333 3456666666666666666666666655442 2223345
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE 384 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 384 (403)
+.|...+...|.+++|..+|....+.. +.-...++.|...|-++|+.++|+..+++..+ +.|....++..+.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmG 429 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcc
Confidence 555555555555555555555555432 22234445555555555555555555555544 4444444444433
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=6.1e-16 Score=145.45 Aligned_cols=339 Identities=16% Similarity=0.136 Sum_probs=213.5
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
.+.+....+-...+.|+++.|++.|+++.+.. |......+ .++..+...|+.++|+..+++.. ...+........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHH
Confidence 34455566677789999999999999999988 65333343 77778888899999999999988 3334444444455
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
+..+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcch
Confidence 77888999999999999999997765 577777888889999999999999999974 34565555444444444566
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH----------------------------------------
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE---------------------------------------- 223 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------------------------------- 223 (403)
..+|++.++++.+.. +.+...+..+..++.+.|-...|.
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 666999999888763 334444444444444443222222
Q ss_pred --------HHHHHHHHc-CCCCch-HHH-HH---HHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673 224 --------RLWSEMEKK-GVDLDV-AAY-NV---RITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM 288 (403)
Q Consensus 224 --------~~~~~~~~~-~~~~~~-~~~-~~---ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (403)
.-++.+... +..|.. ..| .. .+.++ ..+++.++++.|+.+...+.+.-..+-..+..+|...++.
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 222222221 111211 111 11 11222 5667777777777777665443334555666677777777
Q ss_pred HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----------C--CCH-HHHHHHH
Q 015673 289 DEAKKVYEGLEENG-----CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-----------I--PDF-NTVKLLV 349 (403)
Q Consensus 289 ~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~--~~~-~~~~~l~ 349 (403)
++|..+|+.+.... ..++......|.-++...+++++|..+++++.+... . ||. ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 77777777665432 122333345666666777777777777776665210 1 222 2233345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
..+...|+..+|++.++++.+.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5666677777777777776553
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=6.5e-15 Score=138.65 Aligned_cols=337 Identities=12% Similarity=0.041 Sum_probs=233.9
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
...+...|++++|+++|+++.+.. |.. ...+..++..+...++.++|++.++++... .|....+..++..+...+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d--P~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD--PTN-PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 556667788888888888888877 543 455556677777888888888888887643 222333444444444456
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH-----------------------------------
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD----------------------------------- 156 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------------------- 156 (403)
+..+|++.++++.+..+. +...+..+..++.+.|-...|.++..
T Consensus 184 ~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 665688888888776532 55555666666655554444433332
Q ss_pred -------------HchhhCCCCCch-HH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673 157 -------------EIPKKYNLSPDK-IS----YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN 218 (403)
Q Consensus 157 -------------~~~~~~~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 218 (403)
.+....+..|.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 222211111221 11 112345667788899999999999888766566788889999999999
Q ss_pred HHHHHHHHHHHHHcCC-----CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-----------CCCh---hcHHHH
Q 015673 219 AEEAERLWSEMEKKGV-----DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL-----------KPDT---ISYNFL 278 (403)
Q Consensus 219 ~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l 278 (403)
+++|..++..+..... .++......+..++ ..+++++|..+++.+.+.-. .||. ..+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 9999999999876531 22233345566666 88999999999999987311 1111 123445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (403)
+..+...|+..+|++.++++.... +-|......+...+...|.+.+|...++...... +.+..+......++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhH
Confidence 677888999999999999998765 6688888889999999999999999997766553 55677777888889999999
Q ss_pred HHHHHHHHHHHHhCCchh
Q 015673 359 KEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~ 376 (403)
++|..+.+.+.+..|.+.
T Consensus 501 ~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 501 HQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHhhCCCch
Confidence 999999999888766553
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=2.7e-14 Score=137.30 Aligned_cols=324 Identities=13% Similarity=0.092 Sum_probs=241.5
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-C-CCCCHHHHHHHHHHHhccC
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-P-KITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~ 111 (403)
.+...+...++...++.+.+.. |. +......+.-...+.|+.++|.++|+..... + ...+......++..|.+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~--~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE--PA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 3334577777777777787765 32 3444556666778899999999999998642 1 2223444557888887776
Q ss_pred C---HHHHHHH----------------------HHHHHhC-CC-CC--cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC
Q 015673 112 M---FDHAMRT----------------------FDQMDEL-GT-PR--SVISFNALLFACTRSRLYDKVPILFDEIPKKY 162 (403)
Q Consensus 112 ~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 162 (403)
. ...+..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 6 3333222 1111111 11 23 56778888877776 7888899988887653
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HH
Q 015673 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA-AY 241 (403)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 241 (403)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. |+.. .+
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~ 579 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY 579 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence 356555445556667899999999999998664 3455566777888999999999999999998864 3332 22
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS 320 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (403)
..+.... ..|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++..... +.+...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 2222223 669999999999999886 5678889999999999999999999999999875 55677888888899999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 321 GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
|++++|+..+++.++.. +.++..+..+..++...|++++|+..+++..+..
T Consensus 657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999876 6678899999999999999999999999998743
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=9e-15 Score=131.87 Aligned_cols=334 Identities=11% Similarity=0.039 Sum_probs=262.6
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
.....+.+.-.|+.++|.+++.++++.. |. ...+|..+...|-..|+.+++...+-.+. +..+.+...|..+....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHH
Confidence 3344556666799999999999999999 54 56778999999999999999998776665 56677778999999999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hH----HHHHHHHHHHhcC
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KI----SYGLLLKSHCDSG 182 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~ 182 (403)
.+.|++++|.-+|.++++..+. +....---+..|-+.|+...|...|.++... .+|. .. .--.+++.+...+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997653 5555666677899999999999999999864 2222 22 2234567777888
Q ss_pred ChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------------
Q 015673 183 SSDKALELLNEMENK-GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD-------------------------- 235 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 235 (403)
+-+.|.+.++..... +-..+...++.++..+.+...++.+......+......
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887663 23346677889999999999999999888777662222
Q ss_pred -CchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCC--CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015673 236 -LDVAAYNVRITNTYGGDPERLKELIDEMRDAGLK--PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT 312 (403)
Q Consensus 236 -~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (403)
++...+...+........+....+...+.+..+. -+...|.-+..+|.+.|.+.+|+.+|..+......-+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 2222233344333556666666666666666533 3456788899999999999999999999998755566779999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+..+|...|..++|++.|++.+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999765 5566777788999999999999999999874
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=3.1e-14 Score=136.81 Aligned_cols=339 Identities=9% Similarity=0.003 Sum_probs=248.0
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcch---HHH-----------------
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSD---IET----------------- 83 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~---a~~----------------- 83 (403)
+......+.-.+.+.|+.++|..+|+........-..+.....-++..|.+.+.... +..
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 344455556667789999999999999987431111122333466777776655222 211
Q ss_pred -----HHHHhhc--CCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673 84 -----LIESHKN--DPKIT--QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL 154 (403)
Q Consensus 84 -----~~~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 154 (403)
.++.... ...++ +...|..+..++.. +++++|+..|.+..... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1222211 12234 56677888888876 89999999888887644 5655544555566789999999999
Q ss_pred HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673 155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (403)
|+++.. .+|+...+..+...+.+.|++++|..+++...+.+ +.+...+..+...+...|++++|...+++..+.
T Consensus 532 ~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 532 WQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred HHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 999853 35555667778888999999999999999998864 233333444444555669999999999999987
Q ss_pred CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673 235 DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 235 ~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
.|+...+..+-..+ ..|++++|+..+++..+.. +.+...++.+..++...|++++|+..++...+.. +-+...+..+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45666666666666 9999999999999999874 3356778888889999999999999999999874 4567789999
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..++...|++++|+..+++.++.. +.+..+.........+..+++.|.+-+++... +.|+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~-~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT-FSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence 999999999999999999999765 34446666667777777778888887777654 4443
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.2e-14 Score=128.43 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=167.1
Q ss_pred cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHH--HHHHHHHhcCCcCcHH
Q 015673 75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN--ALLFACTRSRLYDKVP 152 (403)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 152 (403)
.|+++.|.+.+......... +...+........+.|+++.|.+.|.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777666655432211 12223333444466777777777777776533 3332222 2345566677777777
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHHhcCCHHHHHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-------VTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
..++.+.+ ..|-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777754 23344556666777777777777777777777665443221 1233334444444455556666
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
++.+.+. .+.++.....+...+ ..|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6555432 123444444445555 777777777777776663 334321 12333334577777777777777653 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555667777777777777777777777754 47777777777777777777777777776644
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=9.6e-15 Score=129.80 Aligned_cols=291 Identities=14% Similarity=0.061 Sum_probs=167.7
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
...|+++.|.+.+.+..... +.+...+......+.+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35577777777776655322 22223334455666666777777777777655332222223333456666677777777
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH-HHHHHHH---HhcCCHHHHHHHHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY-TTVLNCL---YKQGNAEEAERLWSE 228 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~---~~~~~~~~a~~~~~~ 228 (403)
..++.+.+. -|-+...+..+...+.+.|+++.|.+.+..+.+.+.. +...+ ..-..++ ...+..+++.+.+..
T Consensus 174 ~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777653 2334556667777777777777777777777766543 22222 1111111 222233333334444
Q ss_pred HHHcCC---CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 229 MEKKGV---DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS---YNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 229 ~~~~~~---~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
+.+... +.+...+......+ ..|+.+.|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 433311 12444455555555 777777777777777765 333321 111122223346667777777776655
Q ss_pred CCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 302 GCSPNA--TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 302 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3333 456677778888888888888888543334457777777888888888888888888887644
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=4.5e-17 Score=137.68 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDP-KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
.+...+.+.|++++|.++++...... .+.+..+|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45777778888888888885544333 3455566666777777788888888888888776543 55566666666 677
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-VEVTTVTYTTVLNCLYKQGNAEEAER 224 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (403)
+++++|.+++....++ .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888877766543 2455666777777888888888888888876432 34566777777788888888888888
Q ss_pred HHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 225 LWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
.+++..+. .|+ ......++..+ ..|+.+++..+++...+.. +.|...+..+..+|...|+.++|+.+|++..+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888776 343 44455555555 6777777777777666553 3455566677777777777777777777777653
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
+.|+.....+..++...|+.++|.++.+++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 4466667777777777777777777766543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=4.8e-14 Score=125.37 Aligned_cols=293 Identities=14% Similarity=0.051 Sum_probs=212.5
Q ss_pred hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
....|+++.|.+.+....+.. |. +...+-....+....|+.+.|.+.+++..+....+...........+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 345799999999999888776 43 233344567788888999999999999864332222233444678888999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH-HHHHHHH---HhcCChHHHHHH
Q 015673 115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY-GLLLKSH---CDSGSSDKALEL 190 (403)
Q Consensus 115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~---~~~~~~~~a~~~ 190 (403)
.|...++.+.+..+. +...+..+...+...|++++|.+++..+.+. +.. +...+ ..-..++ ...+..+...+.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999987744 6778889999999999999999999999765 433 33323 2222222 333444445557
Q ss_pred HHHHHhCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh--hcCCChHHHHHHHHHHHH
Q 015673 191 LNEMENKGVE---VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN--TYGGDPERLKELIDEMRD 265 (403)
Q Consensus 191 ~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~a~~~~~~~~~ 265 (403)
+..+.+.... .+...+..+...+...|+.++|.+++++..+.........+..+... +..++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 7766664221 37788888999999999999999999999986432222111122222 255788889999988877
Q ss_pred CCCCCC-h--hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 266 AGLKPD-T--ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 266 ~~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
. .|+ . ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 343 4 456688889999999999999999544433478998888999999999999999999988654
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=4.6e-14 Score=124.76 Aligned_cols=287 Identities=12% Similarity=0.069 Sum_probs=214.9
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
.|++++|.+.+....+.. +. ....|........+.|+++.|.+.++++.+................+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888776654 21 222233445555888999999999999874322221122223467888999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch------HHHHHHHHHHHhcCChHHHHHHH
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK------ISYGLLLKSHCDSGSSDKALELL 191 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 191 (403)
..++.+.+..+. +......+...|.+.|++++|..++..+.+.....+.. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987754 67888899999999999999999999997753332221 13334444444555667777777
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCC
Q 015673 192 NEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPD 271 (403)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (403)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... .+...+..++.+++.+..+...+.. +-|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 776554 4557888889999999999999999999998885 4444211 1222225689999999999998874 335
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667888999999999999999999999986 68999988999999999999999999998754
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.5e-14 Score=129.08 Aligned_cols=347 Identities=14% Similarity=0.086 Sum_probs=197.0
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
.+.+|...+.+.+.+...|++..++.+...+......-..-...|..+.+++-..|+++.|...|............-.+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 34456677778888888888888888888887766322234455677888888888888888888777643222212234
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----CcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR----LYDKVPILFDEIPKKYNLSPDKISYGLLLK 176 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (403)
..+...+.+.|+.+.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+ ..+.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 45778888888888888888888775432 4555666666565553 33445555555544 22344555555555
Q ss_pred HHHhcCChHHHHHHHHHHH----hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCchH-------HHH
Q 015673 177 SHCDSGSSDKALELLNEME----NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK---GVDLDVA-------AYN 242 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-------~~~ 242 (403)
.+....-+ .++.+|..+. ..+..+.+...|.+...+...|++.+|...|...... ...++.. -||
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 44433322 2244444332 2333345555666666666666666666666555433 1112210 122
Q ss_pred HHHhhhcC----------------------------------CChHHHHHHHHHHHHCC-CC------------------
Q 015673 243 VRITNTYG----------------------------------GDPERLKELIDEMRDAG-LK------------------ 269 (403)
Q Consensus 243 ~ll~~~~~----------------------------------~~~~~a~~~~~~~~~~~-~~------------------ 269 (403)
.....-.. +...+|...+......+ -.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 11100022 33333333333322111 01
Q ss_pred ----------------CChhcHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 270 ----------------PDTISYNFLMTCYCK------------NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 270 ----------------~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
+|..+.-.|...|.+ .+..++|+++|.++++.. +.|...-+.+.-+++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 122222222222221 234566777777777664 456666666777777778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
++.+|..+|.+..+.. .....+|..+.++|...|++-.|++.|+...+.+.
T Consensus 661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887777654 23445666777788888888888888877766533
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=6.8e-14 Score=112.00 Aligned_cols=231 Identities=18% Similarity=0.152 Sum_probs=110.1
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH---HHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP---YLCNLI 104 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~ 104 (403)
|..-++.|.+ +++++|+++|-+|.+.+ | .+..+...+.+.|.+.|..+.|+++.+.+...+..+... ....|.
T Consensus 39 Yv~GlNfLLs-~Q~dKAvdlF~e~l~~d--~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLS-NQPDKAVDLFLEMLQED--P-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhh-cCcchHHHHHHHHHhcC--c-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3333444433 35666666666666544 2 133334455556666666666666666655433322221 123355
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHHHHHHHHHHh
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISYGLLLKSHCD 180 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 180 (403)
.-|...|-+|.|..+|..+.+.+. .-..+...|+..|-...+|++|+++-.++.+. +-.+. ..-|.-+...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhh
Confidence 555566666666666666554332 13444555555565556666666555555433 21111 1123334444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKEL 259 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~ 259 (403)
..+.+.|..++.+..+.+. ..+..-..+.+.....|++++|.+.++.+.+.+..--......+..+| ..|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554422 122333344445555555555555555555543332333333444444 44444444444
Q ss_pred HHHHHH
Q 015673 260 IDEMRD 265 (403)
Q Consensus 260 ~~~~~~ 265 (403)
+..+.+
T Consensus 272 L~~~~~ 277 (389)
T COG2956 272 LRRAME 277 (389)
T ss_pred HHHHHH
Confidence 444443
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.5e-13 Score=110.48 Aligned_cols=347 Identities=12% Similarity=0.110 Sum_probs=248.3
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
.|....++..+|.++++--..+.|.+++++.....++ ....+|+.+|.+-.-. .-.+++.+|......|+..++
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhH
Confidence 3455678899999999999999999999999887743 3777888777654433 226788888888888999999
Q ss_pred HHHHHHHhccCCHHHH----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc-HHHHHHHchhhC---CCCC----ch
Q 015673 101 CNLIRSYGQAGMFDHA----MRTFDQMDELGTPRSVISFNALLFACTRSRLYDK-VPILFDEIPKKY---NLSP----DK 168 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---~~~~----~~ 168 (403)
|+++.+..+.|+++.| ++++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.... .++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999999987765 5677788999999999999999998888877654 444444443211 2222 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKG----VEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (403)
.-|...+..|....+.+.|.++-.-+.... +.|+ ..-|..+..+.|+....+.....|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556777888888889888888876654321 2222 234667777888888899999999999888788888888
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC-Ch--------HH-----HHHHH-------HHHH
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE-MM--------DE-----AKKVY-------EGLE 299 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~-------~~~~ 299 (403)
..++.+. ..+.++-.-+++..+...|...+...-..++..+++.. .. .. |..++ .++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8899888 88889888888888887764444444444444444332 11 00 11111 1233
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI----PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+. .......+.+...+.+.|+.++|.+++..+.+.+-+ |.......+++.-.+.+.+-.|..+++-+.....|.
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 33 344556677777899999999999999988665422 444555577788888899999999999886644443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=5.3e-17 Score=137.22 Aligned_cols=261 Identities=15% Similarity=0.169 Sum_probs=109.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELG-TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++... + +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 56888899999999999996654433 2335566666777788899999999999999864 2 2245567777777 78
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHhhh-cCCChHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAYNVRITNT-YGGDPERLKE 258 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~-~~~~~~~a~~ 258 (403)
.+++++|.++++...+.. ++...+..++..+...++++++..+++.+....- ..+...|......+ ..|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876643 4667788889999999999999999999876432 33445555555555 8999999999
Q ss_pred HHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673 259 LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (403)
.+++..+.. +.|....+.++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|+..|++.....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999999873 2257778889999999999999999998887664 4566678889999999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+.|+.+...+.+++...|+.++|.++.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 67899999999999999999999999888754
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=7.1e-13 Score=109.40 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=213.2
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHH
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI 153 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 153 (403)
-.|+|..|+++..+....+..| ...|..-+.+.-+.|+.+.+-.++.++-+....++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3588888888888876544444 344666777778888888888888888875444566667777777888888888888
Q ss_pred HHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHHhcCCHHHHHHHH
Q 015673 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-------VTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
-++++.+ .-+-+........++|.+.|++.....++.++.+.|.-.+. .+|..+++-....+..+.-...|
T Consensus 175 ~v~~ll~--~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLE--MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 8888865 33445667788888888999999999999888887765443 46788888777777777777777
Q ss_pred HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673 227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (403)
+..... ...++..-..++..+ ..|+.++|.++.++..+.+..|+ -.....+.+-++...-++..++-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 776543 344455555555566 88999999999888888766655 223345567778877777777766542 44
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
++..+.++...|.+.+.+.+|...|+..++. .|+..+|..+.+++.+.|++.+|.++.++..-
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5578888888899999999999999877754 58888999999999999999999988888764
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1e-12 Score=105.44 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=216.5
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcC
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV------ISFNALLFACTRSR 146 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~ 146 (403)
.-+++.++|.++|-++.+ ..+.+..+..+|.+.|-+.|..+.|+++.+.+.++ ||. .+...|..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 345788999999999985 55555666678999999999999999999998875 442 23455666788999
Q ss_pred CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch----hhHHHHHHHHHhcCCHHHH
Q 015673 147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT----VTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a 222 (403)
-++.|+.+|..+.+...+ -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|
T Consensus 122 l~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999764222 3445778999999999999999999998887544332 3455566666677889999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 300 (403)
..++.+..+. .|+.+--++++.-. ..|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus 200 ~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999886 45555566666655 8899999999999999885444456778899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 015673 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK---KKKIKEAKGVIRTIKK 370 (403)
Q Consensus 301 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 370 (403)
. .+....-..+.+......-.+.|...+.+-+.. +|+...+..++..-.. .|..++...++++|..
T Consensus 278 ~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 T--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred c--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 6 344444445555555555567777766665543 5899888888887665 4557777778888764
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=6.2e-14 Score=122.72 Aligned_cols=285 Identities=12% Similarity=0.014 Sum_probs=218.0
Q ss_pred CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673 77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT--PRSVISFNALLFACTRSRLYDKVPIL 154 (403)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 154 (403)
+..+|...|+++. .....+..+...+.++|...+++++|.++|+.+.+..+ .-+...|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678888999854 34445556677899999999999999999999987542 12677788777654432 12222
Q ss_pred -HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 155 -FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 155 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
-+.+++ ..+-.+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222222 223467889999999999999999999999999863 2377889988888999999999999999987653
Q ss_pred CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673 234 VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
..--...|...+..++.++++.|+-.|++..+.+ +.+.+....+...+-+.|+.++|++++++....+ +.|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 3222333334444449999999999999999875 3366777788888999999999999999998776 4455555566
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
+..+...++.++|+..++++.+.- +.+...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778889999999999999998643 5556778888999999999999999998887633
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.1e-12 Score=109.14 Aligned_cols=322 Identities=16% Similarity=0.197 Sum_probs=226.1
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHH--hcCCcchHH-HHHHHhh--------------
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLA--KSKRFSDIE-TLIESHK-------------- 89 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~~~~~~a~-~~~~~~~-------------- 89 (403)
+-+.+ -.+.+.|...++.-+|+.|...++.. +...-..+++..+ ...+..-|+ +.|-.+.
T Consensus 118 ~E~nL-~kmIS~~EvKDs~ilY~~m~~e~~~v--S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNL-LKMISSREVKDSCILYERMRSENVDV--SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHH-HHHHhhcccchhHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 33434 44556789999999999999988533 3333333333221 111111111 1111111
Q ss_pred -----cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673 90 -----NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL 164 (403)
Q Consensus 90 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (403)
....|.+..++..+|.+.++-...+.|.++|++..+...+.+..+||.+|.+-.-..+ .+++.+|... .+
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hc
Confidence 1123455667888999999999999999999999888788899999999987544322 7888899877 88
Q ss_pred CCchHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCC
Q 015673 165 SPDKISYGLLLKSHCDSGSSDK----ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE-AERLWSEMEKK----GVD 235 (403)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~ 235 (403)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++-++..+ +..++.++... ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56778889999999999999999998888887644 55555555432 122
Q ss_pred ---C-chHHHHHHHhhh-cCCChHHHHHHHHHHHHCC----CCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015673 236 ---L-DVAAYNVRITNT-YGGDPERLKELIDEMRDAG----LKPD---TISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303 (403)
Q Consensus 236 ---~-~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 303 (403)
| |...|...+..| ...+.+.|.++..-+.... +.|+ ...|..+....++....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 344556666666 7788888888777665321 2222 23355666777778888888999999987777
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
-|+..+...++++....|.++-.-++|.+++..|...+......++..+++.+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 88888988999999999999999899988888775555555555555555544
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=5.9e-13 Score=111.61 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=102.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCC---------------------------
Q 015673 215 KQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAG--------------------------- 267 (403)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~--------------------------- 267 (403)
..|++++|.+.+++.+...-.-....||+-+.+-..|+.++|++.|-++...-
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 44677777777777776655555556666555556677777776665543220
Q ss_pred ------CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673 268 ------LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341 (403)
Q Consensus 268 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (403)
++.|+.....|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++.. -++|+
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 2223444445555555555555555443332221 23345555555555555556667777777654 45799
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 342 FNTVKLLVEGL-VKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 342 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
..-|..++..| .+.|++++|..+++.+.+++|.+.. ...-|.+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld-clkflvr 702 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD-CLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH-HHHHHHH
Confidence 99998876654 5689999999999999988887743 4444443
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.9e-12 Score=105.12 Aligned_cols=292 Identities=16% Similarity=0.131 Sum_probs=235.1
Q ss_pred ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673 37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA 116 (403)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 116 (403)
..|+|.+|.++..+..+.+.. ....|..-+++--..|+.+.+-.++.++.+....++........+.....|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 379999999999998887732 34556666777788899999999999998665566666777788889999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch-------HHHHHHHHHHHhcCChHHHHH
Q 015673 117 MRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK-------ISYGLLLKSHCDSGSSDKALE 189 (403)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 189 (403)
..-++++.+.++. +.........+|.+.|++.....++..+.+. +.-.+. .+|..+++-....+..+.-..
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999887754 7788888999999999999999999999776 554443 457777777777777777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCC
Q 015673 190 LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLK 269 (403)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 269 (403)
.++..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|. ...++..+..++.+.-++..+...+.. +
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 88777655 555677778888889999999999999999998876665 333444447788888888888776653 3
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
.++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-.+|
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 35577888999999999999999999987776 7899999999999999999999999998877544343
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.7e-13 Score=120.93 Aligned_cols=346 Identities=13% Similarity=0.058 Sum_probs=221.4
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC--------------
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-------------- 91 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------- 91 (403)
.+|.-+.+.+-..|++++|...|....+.+ +......+.-+.+.+...|+++.+...|+.+...
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 345666777777777777777777666665 4433444455666677777777766666666531
Q ss_pred -----------------------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH----HhCCCCCcHHHHHHHHHHHHh
Q 015673 92 -----------------------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM----DELGTPRSVISFNALLFACTR 144 (403)
Q Consensus 92 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ll~~~~~ 144 (403)
..+.+...|..+...+. .++...++.+|..+ ...+..+.+...|.+......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 11222223333333332 22333334444433 233444677888888888888
Q ss_pred cCCcCcHHHHHHHchhhCC--CCCc------hHHHHHHHHHHHhcCChHH------------------------------
Q 015673 145 SRLYDKVPILFDEIPKKYN--LSPD------KISYGLLLKSHCDSGSSDK------------------------------ 186 (403)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~------------------------------ 186 (403)
.|++++|...|........ ..+| ..+-..+...+-..++.+.
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 8888888888887754310 1222 2222333333334444444
Q ss_pred ----HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHH----HHHHhhh---------
Q 015673 187 ----ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAY----NVRITNT--------- 248 (403)
Q Consensus 187 ----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~----~~ll~~~--------- 248 (403)
|...+...... ...++..++.+...+.+...+..|.+-|..+.+.-. .+|.... |..+..+
T Consensus 545 ~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 44444444433 223445555566666666666666665555544321 1232222 2222222
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..+..++|+++|.+..... +-|...-|-+.-+++..|++.+|..+|..+.+.. .-+..+|-.+..+|..+|++..|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHH
Confidence 1135678899999888775 4477888888889999999999999999999875 3355688899999999999999999
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673 329 VFKESVMVHK-IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 329 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (403)
.|+...+... ..++.+...|..++.+.|.+.+|.+.+.......|.+..
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 9999877643 467889999999999999999999999998876665544
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.1e-14 Score=123.23 Aligned_cols=289 Identities=13% Similarity=0.036 Sum_probs=216.8
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCCHHHHHHHHHHHhccCCHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK--ITQEPYLCNLIRSYGQAGMFDH 115 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 115 (403)
.-+.++|+..|+...... .+..+....+.++|...+++++|+.+|+.+.+... ..+.++|.+.+..+- +.-+
T Consensus 332 ~y~~~~A~~~~~klp~h~---~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHH---YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVA 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHH
Confidence 346789999999965555 33457778899999999999999999999975322 234456666654432 2111
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
---+-+.+.+.+. -.+.+|.++.++|.-+++.+.|++.|++.+ .+.| ...+|+.+..-+.....+|.|...|+..
T Consensus 406 Ls~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 406 LSYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 1122233444333 378899999999999999999999999997 4556 6789999999999999999999999998
Q ss_pred HhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh
Q 015673 195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI 273 (403)
Q Consensus 195 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (403)
.... +.+-..|..+...|.+.++++.|+-.|++..+.+.. +.+....+-..+ +.|+.++|+.++++....+.+ |+.
T Consensus 482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 7642 123344555778899999999999999999887533 223333333334 889999999999999877533 554
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
.--..+..+...++.++|+..++++.+.- +-+...|..+...|.+.|+.+.|+.-|.-+.+.+.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 44456777788999999999999999872 3345577788889999999999999999988765443
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=4.8e-12 Score=110.75 Aligned_cols=347 Identities=13% Similarity=0.037 Sum_probs=244.8
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
.+|..-...+.+.+.++-|+.+|..+++.. |. ....|...+..--..|..+....+|++... ..+.....|.....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf--p~-k~slWlra~~~ek~hgt~Esl~Allqkav~-~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF--PC-KKSLWLRAAMFEKSHGTRESLEALLQKAVE-QCPKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcchhHHHHHHH
Confidence 456666677777777888888888887766 43 445566666666666888888888888774 34455566777777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
.+-..|+...|..++..+.+.... +...|..-+.....+.+++.|..+|.+.. ...|+...|..-+..---.+..+
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHH
Confidence 777888888888888888776654 67778888888888888888888888875 45567777766666666678888
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEM 263 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~ 263 (403)
+|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. -|+..-.-.++.-+ ..|++-+|..+++..
T Consensus 669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 888888888776 5445566777778888888888888887765554 46655555556555 778889999999988
Q ss_pred HHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 015673 264 RDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFN 343 (403)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 343 (403)
.-.+ +-+...|-..|+.-.+.|..+.|..++.+.++. ++.+...|..-|....+.++-......+++. ..|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7775 347778888899888999999998888877754 2334445555555555555544444444332 34555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 344 TVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
....+...+....++++|.+.|.+..+ ..|+...+|.-+..-+..+|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk-~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVK-KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCccchHHHHHHHHHHHhC
Confidence 566666666677777777777777765 45555666666666655555
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.6e-13 Score=113.70 Aligned_cols=353 Identities=15% Similarity=0.125 Sum_probs=205.8
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH----HHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP----YLCN 102 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 102 (403)
.+..+...|..+..+.+|+..|+-+.+....|..... -..+...+.+...+.+|+..|+.........+.. ..+.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~l-kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGIL-KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCcee-eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3445566666777888999999988887765543222 2345667778888899999888776443333332 3455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-----------CCchHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-----------SPDKISY 171 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~ 171 (403)
+.-.+.+.|+++.|+..|+...+.. |+..+-..|+-++.--|+-++..+.|.+|+...+. .|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 5566778899999999999887744 77666666666666678888888888888754321 1222222
Q ss_pred HHHH-----HHHHhcCChHHHHHHHHH---HHhCCCCCchh---------------------hHHHHHHHHHhcCCHHHH
Q 015673 172 GLLL-----KSHCDSGSSDKALELLNE---MENKGVEVTTV---------------------TYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 172 ~~l~-----~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~a 222 (403)
+.-+ .-..+. +-..|.+.+-. +...-+.|+-. .-..-...+.+.|+++.|
T Consensus 360 ~eai~nd~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKE-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 2211 111111 11112222211 11111111100 000112235566777777
Q ss_pred HHHHHHHHHcCCCCc-------------------------------hHHHHHHH------hhhcCCChHHHHHHHHHHHH
Q 015673 223 ERLWSEMEKKGVDLD-------------------------------VAAYNVRI------TNTYGGDPERLKELIDEMRD 265 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~-------------------------------~~~~~~ll------~~~~~~~~~~a~~~~~~~~~ 265 (403)
++++.-+.+..-... ..-||... .++..|++++|.+.+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 776665544321110 00111100 11256999999999999986
Q ss_pred CCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------------CCCCCHHHHHH
Q 015673 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN---------------------------------GCSPNATTFRT 312 (403)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------------~~~~~~~~~~~ 312 (403)
.+-......|| +.-.+-..|++++|+..|-++... -++.|+.+...
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 53222223333 233455667777777666543210 13456667777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
|...|-+.|+-.+|.+++-+--. -++.+.++...|..-|....-+++++.+|++..- ..|+. ..|..|+.-|
T Consensus 598 l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~-~kwqlmiasc 669 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ-SKWQLMIASC 669 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH-HHHHHHHHHH
Confidence 77777777877777777655333 3466777777788888888888888888887753 55664 4888877654
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=8e-12 Score=113.26 Aligned_cols=342 Identities=15% Similarity=0.110 Sum_probs=258.2
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
|.....|..+...+-..|+.++++..+-.+-..+ |. +...|..+.....+.|.+++|.-.|.++.+ -.|++...+-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~-~~p~n~~~~~ 245 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PK-DYELWKRLADLSEQLGNINQARYCYSRAIQ-ANPSNWELIY 245 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcchHHHH
Confidence 4456789999999999999999999887776666 55 448899999999999999999999999985 4455566666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL----LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
.-+..|-+.|+...|...|.++....++.|..-+..+ +..+...++-+.|.+.+.......+-..+...+++++..
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 6778899999999999999999987654444444443 444666677788888888877654555566778999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC---------------------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 178 HCDSGSSDKALELLNEMENKG---------------------------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (403)
+.+...++.|......+.... ..++..++. +.-++...+..+....+.....
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHH
Confidence 999999999999888876621 122222311 2223444444555555555555
Q ss_pred HcC--CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 015673 231 KKG--VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307 (403)
Q Consensus 231 ~~~--~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (403)
... +.-+...|.-+..++ ..|.+..|..+|..+...-..-+...|..+.++|...|..++|.+.|+..+... +-+.
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~ 483 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL 483 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch
Confidence 555 333456677777888 999999999999999887544567789999999999999999999999999763 3445
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMV--------HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
..-.+|...+.+.|+.++|.+.+..+..- ...|.........+.+.+.|+.++-......|.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56667778899999999999999985532 344666677778889999999888666655554
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-11 Score=105.16 Aligned_cols=331 Identities=14% Similarity=0.052 Sum_probs=224.0
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
+....+-+.++|.+++|++.|.+++... |.. +..|....-+|...|+++++.+.-.+... -.|.-...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~e-piFYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDE-PIFYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 4456788899999999999999999988 542 45578888899999999988887776663 2223333444455566
Q ss_pred hccCCHHHHHHH----------------------HHH---------HHhCC--CCCcHHHHHHHHHH-------------
Q 015673 108 GQAGMFDHAMRT----------------------FDQ---------MDELG--TPRSVISFNALLFA------------- 141 (403)
Q Consensus 108 ~~~~~~~~A~~~----------------------~~~---------~~~~~--~~~~~~~~~~ll~~------------- 141 (403)
-..|++++|+.- ++. +.+.+ +-|+.....+....
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 666666665321 111 01011 11221111111111
Q ss_pred --------------------------------------------------------------HHhcCCcCcHHHHHHHch
Q 015673 142 --------------------------------------------------------------CTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 142 --------------------------------------------------------------~~~~~~~~~a~~~~~~~~ 159 (403)
+.-.|+.-.|..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 111234444444455544
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-h
Q 015673 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-V 238 (403)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 238 (403)
.. .+.+...|--+...|....+.++..+.|++..+.+. -++.+|..-.+.+.-.+++++|..=|++.+.. .|. .
T Consensus 354 ~l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~ 428 (606)
T KOG0547|consen 354 KL--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENA 428 (606)
T ss_pred hc--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhhh
Confidence 32 112223366777788888888999999998888743 46777777778888888999999999998876 333 3
Q ss_pred HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH--HH
Q 015673 239 AAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-----PNAT--TF 310 (403)
Q Consensus 239 ~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~--~~ 310 (403)
..|-.+..+. +.+.++++...|++..++ ++.-+..|+.....+...++++.|.+.|+..++.... .+.. +.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 3444444444 889999999999999887 3445778999999999999999999999998865211 1222 22
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
-.++..-. .+++..|.+++++.++.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22222222 389999999999999877 45567888999999999999999999998754
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.9e-10 Score=97.34 Aligned_cols=352 Identities=8% Similarity=0.020 Sum_probs=200.1
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
...+...|-.-+..=.++.+...|..+|+++...- |..+ ..|.-.+.+--..|++..|.++|+... ...|+...|
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVd-qlWyKY~ymEE~LgNi~gaRqiferW~--~w~P~eqaW 177 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVD-QLWYKYIYMEEMLGNIAGARQIFERWM--EWEPDEQAW 177 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHH-HHHHHHHHHHHHhcccHHHHHHHHHHH--cCCCcHHHH
Confidence 34455566666666667777777777777777665 4433 334444555556677777777777766 355667777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHH
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHC 179 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 179 (403)
.+.|+.-.+-+.++.|..+|++..- +.|++.+|-.....-.++|+...+..+|...++..|-.. +...+.+....-.
T Consensus 178 ~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 178 LSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777665 336777776666666666666666666665554332110 0111111111111
Q ss_pred hcCChHHHHHHHHHH--------------------------------------------HhCCCCCchhhHHHHHHHHHh
Q 015673 180 DSGSSDKALELLNEM--------------------------------------------ENKGVEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 180 ~~~~~~~a~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ll~~~~~ 215 (403)
+...++.|.-+|+-. .+. .+.|-.+|--.+..--.
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHh
Confidence 111111111111111 111 12234445555555555
Q ss_pred cCCHHHHHHHHHHHHHcC-------------------------------------------CCCchHHHHHH---Hhhh-
Q 015673 216 QGNAEEAERLWSEMEKKG-------------------------------------------VDLDVAAYNVR---ITNT- 248 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~-------------------------------------------~~~~~~~~~~l---l~~~- 248 (403)
.|+.+...++|++.+..- ++....||.-+ ...+
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 566666666665555431 11112222211 1111
Q ss_pred -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673 249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
++.+...|.+++.... |.-|-..+|...|..-.+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 4444445555444433 335555666666666667777888888888887765 556677777777777788888888
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 328 KVFKESVMVHK-IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
.+|+-+++... ......|...|+--...|.++.|..+++++.++-+-. ..|.....
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~--kvWisFA~ 548 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV--KVWISFAK 548 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc--hHHHhHHH
Confidence 88888776532 1233455666666677888888888888887643222 25655544
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.6e-10 Score=97.82 Aligned_cols=339 Identities=13% Similarity=0.119 Sum_probs=227.6
Q ss_pred hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
=.+++++..|..+|++++..+ ..+...|...+.+-.+..++..|..+++.... ..|.-...|...+..--..|+..
T Consensus 83 Eesq~e~~RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt-~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-ILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhcccH
Confidence 345678889999999999877 33556677778888899999999999999984 34444556777777777889999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
.|.++|++-.+ ..|+..+|++.++.-.+.+.++.|..+|+... -+.|+..+|-.....-.+.|+...|..+|+.+
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999987 45999999999999999999999999999997 66799999999999999999999999999887
Q ss_pred HhC-CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------C---------------
Q 015673 195 ENK-GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK------------------------G--------------- 233 (403)
Q Consensus 195 ~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------~--------------- 233 (403)
.+. |- ..+...+.+....-.++..++.|.-+|.-.++. |
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 654 11 012223333333333333444444333332221 0
Q ss_pred ----CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh-------hcHHHH---HHHHHhcCChHHHHHHHHHH
Q 015673 234 ----VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDT-------ISYNFL---MTCYCKNEMMDEAKKVYEGL 298 (403)
Q Consensus 234 ----~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l---~~~~~~~~~~~~A~~~~~~~ 298 (403)
-+-|-.+|-..+... ..|+.+...++|+..... ++|-. ..|..+ +-.-....|.+.+.++|+..
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 012334444555555 678999999999988765 34422 112111 11122467777788888776
Q ss_pred HHCCCCCCHHHHHHH----HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 299 EENGCSPNATTFRTW----IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 299 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
++. ++....||..+ .....++.++..|.+++...+ |.-|-..+|...|..-.+.++++....++++..+ +.|
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~P 468 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FSP 468 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCh
Confidence 663 23333344333 233345666777777776665 5556667777777777777777777777777766 444
Q ss_pred hhHHHHHHHHHHh
Q 015673 375 NVLRAWKKVEEEL 387 (403)
Q Consensus 375 ~~~~~~~~l~~~~ 387 (403)
.+-.+|....+.-
T Consensus 469 e~c~~W~kyaElE 481 (677)
T KOG1915|consen 469 ENCYAWSKYAELE 481 (677)
T ss_pred HhhHHHHHHHHHH
Confidence 4444665554443
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.1e-11 Score=99.51 Aligned_cols=324 Identities=15% Similarity=0.082 Sum_probs=225.3
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH--HHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL--CNLI 104 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~ 104 (403)
.+...+-.+.+.|....|++.|....... |. .-.+|..+.... .+. +...... .+.+.+.... -.+.
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~-~W~AWleL~~li---t~~----e~~~~l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRY--PW-FWSAWLELSELI---TDI----EILSILV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcC--Cc-chHHHHHHHHhh---chH----HHHHHHH-hcCcccchHHHHHHHH
Confidence 33334455566777777777777776655 43 223333333222 112 2222222 1222211111 1255
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC-CchHHHHHHHHHHHhcCC
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS-PDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 183 (403)
.++....+.++++.-.+.....|++-+...-+....+.....++++|+.+|+++.+..... -|..+|..++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 6666677888888888888888886555555555556677889999999999997742221 2556777665432 221
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELID 261 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~ 261 (403)
- .+.++..-.-.--+--+.|...+.+-|...++.++|...|+...+.+ |. ...|+.+-.-+ ...+...|.+-++
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 12222211111012245778888888999999999999999999874 44 34455444455 8899999999999
Q ss_pred HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673 262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341 (403)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (403)
..++-+ +-|-..|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......+ ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 999875 4588899999999999999999999999999874 6688899999999999999999999999999877 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
...+..|.+.|-+.++.++|...+++..+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78899999999999999999999998876
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-11 Score=101.37 Aligned_cols=296 Identities=12% Similarity=0.041 Sum_probs=223.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHh
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP--RSVISFNALLFACTR 144 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 144 (403)
.+..++....+.+++..-.+.....+.+.+...-+....+.-...++++|+.+|+++.+.++- -|..+|..++.. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 345666677788888888888887667666655566666677889999999999999987532 256777776643 3
Q ss_pred cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673 145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER 224 (403)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (403)
+.+-.- --+-+....... --+.|+..+.+.|.-.++.++|..+|++..+.+. .....|+.+..-|....+...|++
T Consensus 310 ~~~skL-s~LA~~v~~idK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSKL-SYLAQNVSNIDK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHHH-HHHHHHHHHhcc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 322111 111111212112 2456788888999999999999999999998744 367889999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015673 225 LWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303 (403)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 303 (403)
-++...+.. +.|-..|--+-.++ ..+-+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999874 34566666666777 7788889999999998863 4478899999999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKI-P-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
..+...+..+...+-+.++.++|...|++.++. |.. | ......-|..-+.+.+++++|..........
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 456788999999999999999999998887663 322 2 2233334667788899999998887777654
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=2e-11 Score=100.56 Aligned_cols=200 Identities=13% Similarity=0.026 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673 168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247 (403)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 247 (403)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4556666777777777777777777776542 334556666777777777777777777777665322 22333333333
Q ss_pred h-cCCChHHHHHHHHHHHHCCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 015673 248 T-YGGDPERLKELIDEMRDAGLK-PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK 325 (403)
Q Consensus 248 ~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (403)
+ ..|++++|...++........ .....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 4 677777777777777654211 133456667788888999999999999888764 3456678888888899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
|...+++..+.. +.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999888763 556777777888888899999999988887654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=8.2e-12 Score=115.40 Aligned_cols=248 Identities=17% Similarity=0.100 Sum_probs=132.1
Q ss_pred CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673 77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYG---------QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL 147 (403)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 147 (403)
.+++|..+|++... ..|.....|..+..++. ..+++++|...++++.+.++. +..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~-ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVN-MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45666666666653 33334444444444332 223466777777777665543 55666666666666777
Q ss_pred cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673 148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (403)
+++|...|++..+. .+.+...+..+..++...|++++|...++++.+.+.. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777777776642 2333455666666677777777777777777664221 22223333444555667777777776
Q ss_pred HHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 015673 228 EMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENG-C 303 (403)
Q Consensus 228 ~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 303 (403)
+..... .|+ ...+..+-..+ ..|+.++|...+.++... .|+ ....+.+...|...| +.|...++.+.+.. -
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 665542 232 22233333333 667777777777666543 222 233344444555555 36666666554321 1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1211122 22334445555555544 6655443
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=2.9e-10 Score=99.90 Aligned_cols=346 Identities=9% Similarity=0.032 Sum_probs=272.2
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
.....|......=-..|..++-..+|+++...- |. ....|...+..+-..|++..|..++..+.. ..+.+...|..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pk-ae~lwlM~ake~w~agdv~~ar~il~~af~-~~pnseeiwla 623 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PK-AEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPNSEEIWLA 623 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--Cc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCCcHHHHHH
Confidence 344566666666677899999999999999888 43 445566677778888999999999999884 45568888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
.+..-....+++.|..+|.+....+ |+...|.--+....-.++.++|++++++.++. ++-=...|-.+.+.+-+.+
T Consensus 624 avKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 9999999999999999999998755 67777777777777789999999999999874 3333456788888999999
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID 261 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~ 261 (403)
+++.|...|..-.+. ++..+..|..+...--+.|..-.|..+++...-.+.. +...|-..+..- +.|+.+.|..++.
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876665 5566778888888888899999999999998877533 555666666665 9999999999999
Q ss_pred HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673 262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341 (403)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (403)
+..+. ++.+...|..-|....+.++-..+...++ +. .-|+...-.+...|....++++|.+.|.+..+.+ +..
T Consensus 778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---kc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---KC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---hc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 98876 34455667777776666666444444433 32 4577777788888999999999999999999876 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
-.+|..+...+.+.|.-++-.+++.+... -.|.....|.++-..
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~-~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCET-AEPTHGELWQAVSKD 894 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCCcHHHHHhhh
Confidence 68888899999999999999999998876 445555577665543
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=7.3e-12 Score=103.22 Aligned_cols=199 Identities=14% Similarity=0.036 Sum_probs=118.6
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+...|++++|++.++++.+.. |. +...+..+...+...|++++|.+.+++.... .+.+...+..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-DYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHH
Confidence 345556666777777777777777776655 33 3445556666677777777777777766532 2334445556666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTP-RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (403)
.+...|++++|.+.|++....... .....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 667777777777777776653211 12334555555666666666666666666542 222344555666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666554 233445555555666666666666666555543
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.5e-12 Score=101.94 Aligned_cols=259 Identities=12% Similarity=0.107 Sum_probs=205.0
Q ss_pred HhccCCHHHHHHHHHHHHhC---------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 107 YGQAGMFDHAMRTFDQMDEL---------GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
|...+++..|........+. +...|-.--+.+..+|.+.|.+.+|.+.++.-.++ .|-+.||..|-++
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskv 265 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKV 265 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHH
Confidence 34556666666444333221 11122233367888999999999999999988754 5678889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHH
Q 015673 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERL 256 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a 256 (403)
|.+..++..|+.++.+-.+. .+-|+.....+.+.+-..++.++|.++++...+.. +.++.....+...+ ..++++.|
T Consensus 266 Y~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 99999999999999998876 55566666677888888999999999999998863 23444444444445 88999999
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA--TTFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
...++.+...|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+. .+|-.+.......|++.-|.+.|+-.+
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999966 7889999999999999999999999998865434443 467788888889999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 335 MVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
..+ ..+.+.++.|.-.-.+.|++++|..+++......
T Consensus 423 ~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 423 TSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 766 5677899999999999999999999999987643
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.8e-11 Score=113.11 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---------cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc
Q 015673 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTR---------SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (403)
+++++|+..|++..+..+. +...|..+..++.. .+++++|...+++..+ --+-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--LDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHc
Confidence 3467888888888876543 45556555554432 2346778888888775 2334566777777788888
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHH
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELID 261 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~ 261 (403)
|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+....+....+..+...+..|++++|...++
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888888888763 34566777788888888888888888888887643322222222222336778888888888
Q ss_pred HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCC-CC
Q 015673 262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVH-KI 339 (403)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 339 (403)
++.+...+-+...+..+..++...|+.++|...+.++... .|+. ...+.+...++..| ++|...++.+.+.. ..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8776531223445666777788888888888888887654 3333 34444555666666 47777666665531 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 211112 33445556666555555 66654
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.4e-11 Score=99.23 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=193.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
+.+.++|.+.|.+.+|.+.|+...+.. |-+.||..|-..|.+..+...|+.++.+-.+ .++-|.....-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 679999999999999999999887743 6788899999999999999999999999876 445555556677888899
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI 260 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~ 260 (403)
.++.++|.++++...+. .+.++.....+...|.-.++++-|+..++++++.|+....-..|+.+..+..++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998876 44577777778888899999999999999999999886666666666666999999999999
Q ss_pred HHHHHCCCCCCh--hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 261 DEMRDAGLKPDT--ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 261 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
+.....--.|+. ..|..+.......||+..|.+.|+-...++ ..+...++.|...-.+.|++++|..+++...+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 988765444443 467778888888999999999999988775 4567789999988999999999999999877543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4e-10 Score=97.44 Aligned_cols=273 Identities=8% Similarity=0.012 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
.....-..-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+=.++.+ ..|....+|-++.-.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHHH
Confidence 3344455667788999999999999988654 5777777777899999999888888888876 556678899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK 257 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~ 257 (403)
|.-.|+..+|.++|.+....+.. =...|-.+...|+-.|..|+|...+...-+.=.......+-+.+...+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999998765322 34678889999999999999999998877652222233333333333789999999
Q ss_pred HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----G--CSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
+.|.+..... +.|+...+-+.......+.+.+|..+|+..... + ...-..+++.+..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999988763 446778888887777889999999999987621 1 11245578889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673 332 ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (403)
+.+... +.+..++..+.-.|...|+++.|...|.+..- ..|++.
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-l~p~n~ 523 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-LKPDNI 523 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-cCCccH
Confidence 999876 77899999999999999999999999999886 555554
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=2.8e-10 Score=101.97 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=148.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS--- 145 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 145 (403)
...+...|++++|++.++... ................+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 344556666666666666544 223333334455666666667777777776666665521 333333333333111
Q ss_pred --CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 146 --RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 146 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
.+.+....+|+++...+ |.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12344555666654431 3322222222222221122 2344455555666654 3444444444444444444
Q ss_pred HHHHHHHHHc----C----------CCCchHHH--HHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHh
Q 015673 223 ERLWSEMEKK----G----------VDLDVAAY--NVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCK 284 (403)
Q Consensus 223 ~~~~~~~~~~----~----------~~~~~~~~--~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 284 (403)
.+++...... + -.|+...| ..+...+ ..|++++|.+++++..+. .|+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 4444443321 0 11222222 2223333 667777777777766665 343 4456666666667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhcC
Q 015673 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT------V--KLLVEGLVKKK 356 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g 356 (403)
.|++.+|...++.....+ .-|...-+..+..+.+.|++++|.+++......+..|.... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777766654 33555555556666677777777776666655443222111 1 33455666777
Q ss_pred CHHHHHHHHHHHHH
Q 015673 357 KIKEAKGVIRTIKK 370 (403)
Q Consensus 357 ~~~~a~~~~~~~~~ 370 (403)
++..|.+-|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 77766666655543
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=3e-09 Score=95.45 Aligned_cols=294 Identities=16% Similarity=0.131 Sum_probs=199.8
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ 109 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (403)
-....+...|++++|++.++.-...- .+........+..+.+.|+.++|..++..+.. ..|.+...|..+..+..-
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I---~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQI---LDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHhh
Confidence 34567788999999999998866655 22445567789999999999999999999985 455667777777777632
Q ss_pred c-----CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC-cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 110 A-----GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD-KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 110 ~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
. .+.+...++|+.+.+.- |...+...+.-.+.....+. .+..++..+..+ |+|+ +|+.+-..|.....
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhH
Confidence 2 35777788898887644 33333322222222212222 244455555555 6544 45555555655555
Q ss_pred hHHHHHHHHHHHhC----C----------CCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHh
Q 015673 184 SDKALELLNEMENK----G----------VEVTT--VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRIT 246 (403)
Q Consensus 184 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 246 (403)
.+-..+++...... + -+|+. +++..+.+.|-..|++++|++.+++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55555555554322 1 23444 34566678888999999999999999987 566 444555555
Q ss_pred hh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHH
Q 015673 247 NT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT------F--RTWIYHL 317 (403)
Q Consensus 247 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~--~~l~~~~ 317 (403)
.+ ..|++.+|.+.++.....+.. |...-+..+..+.+.|++++|..++..+...+..|-... | .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 55 899999999999999887633 667777788888999999999999999887664332221 1 2345688
Q ss_pred HccCChHHHHHHHHHHHhC
Q 015673 318 CGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~ 336 (403)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8999999888877665543
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=1.3e-09 Score=95.74 Aligned_cols=352 Identities=14% Similarity=0.116 Sum_probs=224.4
Q ss_pred CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673 20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99 (403)
Q Consensus 20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (403)
+.+.|...|+.++-......++++|++.|..+...+ |+ +...+.-+.-.-++.++++...+....+.+ ..+.....
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLq-l~~~~ra~ 145 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQ-LRPSQRAS 145 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhhhHHH
Confidence 455667788888777788888899999998888877 43 556666666666777888877777776663 44455666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHH------HHHhcCCcCcHHHHHHHchhhCCCCCchHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELG-TPRSVISFNALLF------ACTRSRLYDKVPILFDEIPKKYNLSPDKISYG 172 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (403)
|..++.++.-.|++..|..+++...+.. ..|+...+..... ...+.|..++|.+.+..-.. .+.-....-.
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e 223 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhh
Confidence 7788888888899999998888887654 2456555544332 24556777777777766533 2211222234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH-HHHHHhcCCHHHHH-HHHHHHHHc------------------
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV-LNCLYKQGNAEEAE-RLWSEMEKK------------------ 232 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~-~~~~~~~~~------------------ 232 (403)
.-...+.+.+++++|..++..+...+ ||...|... ..++.+..+.-++. .+|....+.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence 45667788899999999999998863 455555444 44443333333333 444443322
Q ss_pred ----------------CCCCchHHHHHHHhhhcCCChHHHHHHHHHHH----H----CC----------CCCCh--hcHH
Q 015673 233 ----------------GVDLDVAAYNVRITNTYGGDPERLKELIDEMR----D----AG----------LKPDT--ISYN 276 (403)
Q Consensus 233 ----------------~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~----~----~~----------~~~~~--~~~~ 276 (403)
|++ ..+..+...+ .++.... +++++. . .| -+|.. .++-
T Consensus 302 el~~~vdkyL~~~l~Kg~p---~vf~dl~SLy--k~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVP---SVFKDLRSLY--KDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred hhHHHHHHHHHHHhhcCCC---chhhhhHHHH--hchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 111 1111111112 1111111 222221 1 11 03333 3445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015673 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK 355 (403)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (403)
.++..+-..|+++.|..+++..+.+ .|+.. .|..-.+.+...|++++|..++++..+.+ .+|...-..-+.-..+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 6778888999999999999999876 66643 56666688999999999999999998877 56665555667778889
Q ss_pred CCHHHHHHHHHHHHHhCC------chhHHHHHHHHHHhC
Q 015673 356 KKIKEAKGVIRTIKKKFP------PNVLRAWKKVEEELG 388 (403)
Q Consensus 356 g~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~ 388 (403)
++.++|.++...+.+... .+....|-.+..+-.
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 999999999988865321 223346666554433
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=5.3e-11 Score=107.82 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=165.0
Q ss_pred HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 015673 47 IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL 126 (403)
Q Consensus 47 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 126 (403)
.+-.+...|+.| +..+|..+|..|+..|+++.|- +|.-|.....+.....++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~P--nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILP--NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHhcCCC--chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 455566677656 5677888888888888888887 8888877777777788888888888888877765
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcCc---HHHHHHHchhhC---CC-----------------CCchHHHHHHHHHHHhcCC
Q 015673 127 GTPRSVISFNALLFACTRSRLYDK---VPILFDEIPKKY---NL-----------------SPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~---~~-----------------~~~~~~~~~l~~~~~~~~~ 183 (403)
.|...+|..|..+|...||+.. +.+.+..+...+ |+ -||.. ..+....-.|-
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 3788888888888888887654 222111111110 11 11111 12222233344
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE 262 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 262 (403)
++.+++++..+...... . .+..+++-+... +....++........-.|+..+|..++... ..|+.+.|..++.+
T Consensus 155 waqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 45555555444322110 0 111123333222 223333333333322258889999988888 89999999999999
Q ss_pred HHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673 263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322 (403)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (403)
|.+.|++.+...|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999988888877777766 78888888899999999999999999888888887665
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.5e-10 Score=95.17 Aligned_cols=277 Identities=16% Similarity=0.069 Sum_probs=148.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
.-.+.+...+++.+..++.+.+.. ..+.....+..-|.++...|+..+-..+=.++.+..+. ...+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhc
Confidence 344444455555555555555542 23333333333333455555554444444444443322 3445555555555555
Q ss_pred CcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 147 LYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
.+.+|.+.|.+.. .+.|. ...|-.....|.-.|..+.|+..+..+.+. ++-....+--+.--|.+.++.+-|.+.
T Consensus 327 k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 327 KYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred CcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 5555555555543 22222 234555555555555555555555554433 211222222233344455555555555
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC----CC--CCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA----GL--KPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 298 (403)
|.+..... +.|+...+-+-... ..+.+.+|..+|+..... +- ..-..+++.|..+|.+.+.+++|+..++..
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 55554431 12222233222222 455555555555544311 00 013345778888888888889999888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (403)
+... +.+..++.++.-.|...|+++.|++.|.+.+ .+.|+..+-..++..+.
T Consensus 482 L~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 482 LLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 7664 5677888888888888899999998888877 45677666665555443
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.7e-12 Score=77.47 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=33.9
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (403)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=1e-09 Score=93.20 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=81.9
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CC--cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 109 QAGMFDHAMRTFDQMDELGT-PR--SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
..+..+.++.-+.++..... .| ....|..+...+...|++++|...|++..+ ..+.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHH
Confidence 34555666666666654221 11 133455555566666666666666666654 22334556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR 264 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~ 264 (403)
.|...|++..+.. +-+..+|..+..++...|++++|.+.|+...+. .|+........... ..++.++|...|....
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666666542 223455566666666666666666666666654 23222111111112 4455666666664433
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.9e-12 Score=77.26 Aligned_cols=50 Identities=34% Similarity=0.719 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 215 (403)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777653
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=3.1e-10 Score=100.52 Aligned_cols=242 Identities=16% Similarity=0.136 Sum_probs=158.2
Q ss_pred CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 015673 58 PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL---- 126 (403)
Q Consensus 58 p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 126 (403)
++....+...+...|...|+++.|+.+++...+. ..+.-....+.+...|...+++.+|..+|+.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334455566888888888888888888877643 23333333455778888888888888888877542
Q ss_pred -CC-CC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC----CC-CCch-HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673 127 -GT-PR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY----NL-SPDK-ISYGLLLKSHCDSGSSDKALELLNEMENK 197 (403)
Q Consensus 127 -~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (403)
|. .| -..+++.|..+|.+.|++++|..+++...+-. +. .|.. ..++.++..|+..+++++|..++....+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 21 11 24456777777888888888777666654321 22 2333 23566777788888888888888776432
Q ss_pred ---CCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673 198 ---GVEV----TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG----V---DLDVAAYNVRITNT-YGGDPERLKELIDE 262 (403)
Q Consensus 198 ---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 262 (403)
-..+ -..+++.|...|...|++++|.+++++++... . .-....++.+-..+ +.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1111 24578888899999999999998888876542 1 11133445555555 77777777777765
Q ss_pred HHH----CCC-CC-ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 263 MRD----AGL-KP-DTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 263 ~~~----~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
... .|. .| ...+|..|...|...|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 221 12 23567888888888888888888887765
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=2e-09 Score=91.30 Aligned_cols=94 Identities=17% Similarity=0.040 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (403)
|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|...|++..+. .+-+..+|..+..++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 333444444445555555544444443322 3444444444444455555555444444421 1112334444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 015673 180 DSGSSDKALELLNEMEN 196 (403)
Q Consensus 180 ~~~~~~~a~~~~~~~~~ 196 (403)
..|++++|.+.|+...+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44555555555544444
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.3e-08 Score=86.35 Aligned_cols=350 Identities=14% Similarity=0.131 Sum_probs=204.4
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
....+-++.....|++++|+....+++..+ |. +..++.+-+-++++.+++++|..+.+.-.. .......+..=+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHH
Confidence 445556778888999999999999999988 54 455566667788999999999966655331 1111222223455
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----------------------
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN---------------------- 163 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------- 163 (403)
+..+.+..++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+...
T Consensus 88 c~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 66688999999998883322 2334666666778889999999999988855321
Q ss_pred -----CCCchHHHHHH---HHHHHhcCChHHHHHHHHHHHhCC-------CCC------chh-hHHHHHHHHHhcCCHHH
Q 015673 164 -----LSPDKISYGLL---LKSHCDSGSSDKALELLNEMENKG-------VEV------TTV-TYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 164 -----~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~~-~~~~ll~~~~~~~~~~~ 221 (403)
..| ..+|..+ .-.+...|++.+|+++++...+.+ -.- ... .-.-+..++-..|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 001 1133333 234557899999999998883211 100 111 12234556677899999
Q ss_pred HHHHHHHHHHcCCCCchHH----HHHHHhhh-------------------------------------------------
Q 015673 222 AERLWSEMEKKGVDLDVAA----YNVRITNT------------------------------------------------- 248 (403)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~----~~~ll~~~------------------------------------------------- 248 (403)
|.+++..+++.... |... -|-++..-
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999888776432 2111 11111000
Q ss_pred -------------------------------cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHH-
Q 015673 249 -------------------------------YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYE- 296 (403)
Q Consensus 249 -------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~- 296 (403)
+...+..+.+++...-+....-.......++......|+++.|..++.
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000111122222222221101112233445555667888888888888
Q ss_pred -------HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673 297 -------GLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV------HKIPDFNTVKLLVEGLVKKKKIKEAKG 363 (403)
Q Consensus 297 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (403)
.+.+.+..|- +...++..+.+.++.+.|..++...+.- +-..-..++..++..-.+.|+.++|..
T Consensus 402 ~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 4444444443 4445556667766666666665554432 101112333444445556799999999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHhCC
Q 015673 364 VIRTIKKKFPPNVLRAWKKVEEELGL 389 (403)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (403)
+++++.+..+++. .....++.+|..
T Consensus 480 ~leel~k~n~~d~-~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 480 LLEELVKFNPNDT-DLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHhCCchH-HHHHHHHHHHHh
Confidence 9999998666664 456666655543
No 70
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=6.8e-10 Score=88.58 Aligned_cols=332 Identities=15% Similarity=0.083 Sum_probs=225.3
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH-
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC- 101 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 101 (403)
.....+..++..+.+..++..|++++..-.++. |. +......+..+|-...++..|.+.++++.. . .|...-|.
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l-~P~~~qYrl 82 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ-L-HPELEQYRL 82 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-ChHHHHHHH
Confidence 344568899999999999999999999998888 43 556678899999999999999999999873 2 23333332
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (403)
--...+.+.+.+..|+++...|... ++...-..-+.+ ....+++..+..++++.... -+..+.+...-...
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gClly 155 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheee
Confidence 2456677889999999999988752 232222222222 44578899999999888632 24445555555566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-------------h--------
Q 015673 180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-------------V-------- 238 (403)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~-------- 238 (403)
+.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++...++.++|+... .
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 8999999999999988764333456676554 56688999999999999999987522 1
Q ss_pred -------HHHHHHHhhh-cCCChHHHHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015673 239 -------AAYNVRITNT-YGGDPERLKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT 309 (403)
Q Consensus 239 -------~~~~~ll~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (403)
..+|.-.... +.++++.|.+-+..|.-+ ....|++|...+.-.- -.+++....+-+.-+.+.+ +-...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHH
Confidence 1122222222 668888888888877533 1234666665554332 2345555666666666654 344578
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 015673 310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKI-PDFNTVKLLVEGLVK-KKKIKEAKGVIRTIKK 370 (403)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 370 (403)
|..++-.||++.-++.|-.++.+-.....+ .+...|+ |++++.. .-.+++|.+-++.+.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888999999999998888653222111 2333333 4555554 4567888877777643
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=5.8e-10 Score=98.83 Aligned_cols=246 Identities=19% Similarity=0.140 Sum_probs=173.6
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCcHHH-HHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673 89 KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-----G-TPRSVIS-FNALLFACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 161 (403)
.....|....+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33445555556677999999999999999999987663 2 1234433 344777899999999999999988643
Q ss_pred C----C-CCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCch-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 162 Y----N-LSP-DKISYGLLLKSHCDSGSSDKALELLNEMENK-----GV-EVTT-VTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 162 ~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
. | ..| -..+++.|...|.+.|++++|...++...+. +. .|.. ..++.+...|...+++++|..++..
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1 2 122 2456888888999999999998888876432 11 1222 3456677888999999999999987
Q ss_pred HHHc---CCCCc----hHHHHHHHhhh-cCCChHHHHHHHHHHHHC----CCC--C-ChhcHHHHHHHHHhcCChHHHHH
Q 015673 229 MEKK---GVDLD----VAAYNVRITNT-YGGDPERLKELIDEMRDA----GLK--P-DTISYNFLMTCYCKNEMMDEAKK 293 (403)
Q Consensus 229 ~~~~---~~~~~----~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~ 293 (403)
..+. -+.++ ..+++.+-..+ ..|++++|++++++.... +-. + ....++.|...|.+.+...+|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 6543 12222 34566666667 899999999999988643 111 1 13457788889999999999999
Q ss_pred HHHHHH----HCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 294 VYEGLE----ENG--CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 294 ~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
+|.+.. ..| .+-...+|..|...|...|+++.|.++.+.+.
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888744 222 12223577888888888888888888877665
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=85.49 Aligned_cols=288 Identities=9% Similarity=-0.013 Sum_probs=147.6
Q ss_pred CChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 015673 39 FDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMR 118 (403)
Q Consensus 39 ~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 118 (403)
++...|...+-.+.....-| .+.+....+...+...|+.++|+..|++... -.+-+........-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr-~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLR-CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCC-ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444443333333212 2445555666666666666666666666542 122222222233333455566666555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 015673 119 TFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG 198 (403)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (403)
+...+....- -+...|..-+.......+++.|+.+-.+.++. -+.+...|-.-...+...++++.|.-.|+.....
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L- 363 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQML- 363 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence 5555544211 12333333344444555666666666655531 1223334444445556666666666666666554
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH-hhh--cCCChHHHHHHHHHHHHCCCCCC-hhc
Q 015673 199 VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI-TNT--YGGDPERLKELIDEMRDAGLKPD-TIS 274 (403)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~ 274 (403)
-+-+...|..|+.+|...|.+.+|.-.-+...+. ...+..+.+.+- ..+ ....-++|.+++++-... .|+ ...
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 2335566666777777667666666555544432 122233333221 111 333345666666655543 333 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.+.+...|...|..+.++.+++..... .||....+.+.+.+...+.+++|++.|...+..+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 445555566666666666666665554 5666666666666666666666666666665443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.2e-08 Score=82.76 Aligned_cols=306 Identities=11% Similarity=0.022 Sum_probs=200.6
Q ss_pred CCcchHHHHHHHhhc-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673 76 KRFSDIETLIESHKN-DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL 154 (403)
Q Consensus 76 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 154 (403)
++-..+...+-.+.. ...+.+......+..++...|+.++|+..|+.....++- +........-.+.+.|+++....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHH
Confidence 444444444333322 344556666777888888888888888888887764321 222233333445567777777666
Q ss_pred HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673 155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (403)
...+... ..-+...|-.-+......+++..|+.+-++.++.+ +.+...+..-...+...|+.++|.=.|+..+...
T Consensus 289 ~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 289 MDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 6666532 11233344444455556778888888888877753 2355556556667778888888888888877652
Q ss_pred CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 015673 235 DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLM-TCYC-KNEMMDEAKKVYEGLEENGCSPNA-TTF 310 (403)
Q Consensus 235 ~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-~~~ 310 (403)
+.+...|.-++..| ..|.+.+|.-+-+..... +..+..+...+. ..|. .-.--++|.++++..... .|+. ...
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 24567788888888 778888877766655443 233444544331 2222 223346788888777665 4553 356
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCC
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV 390 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (403)
+.+...+...|...+++.++++.+. ..||....+.|.+.+...+.+++|...|....+ ..|++..+...|-..-...
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-QDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCccchHHHHHHHHHHhcc
Confidence 6777888899999999999999875 368999999999999999999999999999987 5555555665555444443
Q ss_pred CC
Q 015673 391 PA 392 (403)
Q Consensus 391 ~~ 392 (403)
++
T Consensus 519 ~~ 520 (564)
T KOG1174|consen 519 DE 520 (564)
T ss_pred CC
Confidence 33
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.5e-09 Score=83.51 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=123.4
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
.-.+.-.+...|++..|.+-++++++.+ |. +..+|..+...|.+.|..+.|.+.|++... ..+.+..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PS-YYLAHLVRAHYYQKLGENDLADESYRKALS-LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCCccchhhhhhHHH
Confidence 3344556667777777777777777766 32 455566666777777777777777777663 4455566667777777
Q ss_pred hccCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGT-PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (403)
|..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+. .+-...+...+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 777777777777777665321 112455666666666677777777777666542 22233445566666666677777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
|..+++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7666666666544 56666666666666666666666555555443
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8.7e-09 Score=87.84 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHH
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQ-EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS-VISFNALLFACT 143 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 143 (403)
.....-+.+.|.+++|++.|..... ..|+ +.+|....-+|...|+|+++.+.-...++.+ |+ +.++..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 4455667899999999999999984 3344 6778889999999999999999888888744 43 334444444454
Q ss_pred hcCCcCcH
Q 015673 144 RSRLYDKV 151 (403)
Q Consensus 144 ~~~~~~~a 151 (403)
..|++++|
T Consensus 195 ~lg~~~ea 202 (606)
T KOG0547|consen 195 QLGKFDEA 202 (606)
T ss_pred hhccHHHH
Confidence 45554443
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=1.7e-08 Score=88.85 Aligned_cols=302 Identities=12% Similarity=-0.010 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPK-ITQE-PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
..|..+...+...|+.+.+...+........ ..+. .........+...|++++|.+.+++..+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3344444445555555554444444332111 1111 11112233344556666666666666554322 3333331 11
Q ss_pred HHHh----cCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 015673 141 ACTR----SRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 141 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 215 (403)
.+.. .+....+.+.+.... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2222 233333444433311 12222 2333444556666666666666666666652 3344555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CchH--HHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCChhcH-H--HHHHHHHhcCC
Q 015673 216 QGNAEEAERLWSEMEKKGVD-LDVA--AYNVRITNT-YGGDPERLKELIDEMRDAGL-KPDTISY-N--FLMTCYCKNEM 287 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~ 287 (403)
.|++++|...+++....... ++.. .+..+...+ ..|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 66666666666666554221 1211 122222333 66666666666666543211 0111111 1 22222233333
Q ss_pred hHHHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhc
Q 015673 288 MDEAKKV--YEGL-EENGC-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI--------PDFNTVKLLVEGLVKK 355 (403)
Q Consensus 288 ~~~A~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 355 (403)
...+.++ +... ..... ............++...|+.++|..+++.+...... ...........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 1111 11100 111122224555666777777777777766543211 1122223334455577
Q ss_pred CCHHHHHHHHHHHHH
Q 015673 356 KKIKEAKGVIRTIKK 370 (403)
Q Consensus 356 g~~~~a~~~~~~~~~ 370 (403)
|++++|.+.+.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777654
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=3.1e-09 Score=81.82 Aligned_cols=208 Identities=12% Similarity=0.030 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
.+...+.-.|...|+...|..-+++..+ ..|....+|..+...|.+.|+.+.|.+.|++..+..+. +....|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~-~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE-HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3445677789999999999999999985 56677778899999999999999999999999987764 788899999999
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
|..|++++|...|++........--..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999998875555567789999999999999999999999999873 33566778889999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN 276 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (403)
...++.....+. ++.......+... ..|+.+.+.+.=..+... -|...-|.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 999999988765 7877777777777 889999998888777765 55554443
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=3.1e-09 Score=96.75 Aligned_cols=247 Identities=14% Similarity=0.148 Sum_probs=164.0
Q ss_pred CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673 19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP 98 (403)
Q Consensus 19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (403)
.+..|+..+|.+++..|+..|+.+.|- +|..|..... ......++.++......++.+.+. .|...
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL--pv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL--PVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc--cccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 467788999999999999999999988 9998887773 235556677777777777766554 57778
Q ss_pred HHHHHHHHHhccCCHHH---HHHHHHHH----HhCCCCCcHHHH--------------HHHHHHHHhcCCcCcHHHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDH---AMRTFDQM----DELGTPRSVISF--------------NALLFACTRSRLYDKVPILFDE 157 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~---A~~~~~~~----~~~~~~~~~~~~--------------~~ll~~~~~~~~~~~a~~~~~~ 157 (403)
+|..|..+|.+.||... +.+.+..+ ...|+.....-+ ...+......|.++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999998654 33322222 122322111111 1122223334445555555544
Q ss_pred chhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 015673 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237 (403)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (403)
+.......|.. .+++-+... .....++........-.|++.+|..++.+-...|+.+.|..++.+|.+.|.+.+
T Consensus 165 ~Pvsa~~~p~~----vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWNAPFQ----VFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCcccccchHH----HHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 43221111111 124433322 223333433333321247899999999999999999999999999999998888
Q ss_pred hHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673 238 VAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM 287 (403)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (403)
...|..++.+ .++...++.++..|.+.|+.|+..|+..-+..+...|.
T Consensus 239 ~HyFwpLl~g--~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG--INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc--CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8877777766 67888888999999999999999998887777777554
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=9.1e-08 Score=84.30 Aligned_cols=307 Identities=11% Similarity=0.048 Sum_probs=191.8
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH-
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN- 102 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 102 (403)
....+..+...+...|+++.+...+....+..................+...|++++|...+++.... .|.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHh
Confidence 34556667777777889999888888887766222112223334455667889999999999998753 4444444442
Q ss_pred --HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 103 --LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 103 --l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
+.......+..+.+.+.+..... ..+........+...+...|++++|...+++..+ ..+.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 22222234556666666554211 1222334455666788999999999999999986 344556778889999999
Q ss_pred cCChHHHHHHHHHHHhCCC-CCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHH-H--HHHhhh-cCCC
Q 015673 181 SGSSDKALELLNEMENKGV-EVTT--VTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAY-N--VRITNT-YGGD 252 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~-~~~~ 252 (403)
.|++++|..++++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++... ..|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999877532 1222 3455788899999999999999999865432 1122111 2 222222 4454
Q ss_pred hHHHHHH--HHHHHHCCCCCChhcHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHcc
Q 015673 253 PERLKEL--IDEMRDAGLKPDTISYN--FLMTCYCKNEMMDEAKKVYEGLEENGCSP--N------ATTFRTWIYHLCGS 320 (403)
Q Consensus 253 ~~~a~~~--~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~ 320 (403)
...+.+. +..............+. ....++...|+.+.|..+++.+....... . .........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 4444333 22221111111112222 45667778999999999999987533220 1 11112223355688
Q ss_pred CChHHHHHHHHHHH
Q 015673 321 GNFDKAYKVFKESV 334 (403)
Q Consensus 321 ~~~~~a~~~~~~~~ 334 (403)
|+.++|.+.+....
T Consensus 321 g~~~~A~~~L~~al 334 (355)
T cd05804 321 GNYATALELLGPVR 334 (355)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987754
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.2e-08 Score=81.68 Aligned_cols=300 Identities=16% Similarity=0.135 Sum_probs=155.6
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+...+..+...|....++..|.+.|+++-... |....+-+ .-.+.+-+.+.+.+|..+...+....... ......-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl-Y~AQSLY~A~i~ADALrV~~~~~D~~~L~-~~~lqLq 118 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL-YQAQSLYKACIYADALRVAFLLLDNPALH-SRVLQLQ 118 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH-HHHHHHHHhcccHHHHHHHHHhcCCHHHH-HHHHHHH
Confidence 44556666666666777777777777776655 43232222 23455666677777777776665321111 1111111
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
.......+++..+..+.++....| +..+.+.......+.|+++.|.+-|+...+-.|..|-. .|+..+ +..+.|+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniAL-aHy~~~q 193 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLAL-AHYSSRQ 193 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHH-HHHhhhh
Confidence 111234566666766666665322 33444444444566777777777777776665554433 344433 3345667
Q ss_pred hHHHHHHHHHHHhCCCCC-------------c---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 015673 184 SDKALELLNEMENKGVEV-------------T---------------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-V 234 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~ 234 (403)
++.|++...++.++|++. | +..+|.-...+.+.|+++.|.+.+..|..+. .
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 777777777777666431 1 0122223333456677777776666664321 2
Q ss_pred CCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHH
Q 015673 235 DLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPNATTFRTW 313 (403)
Q Consensus 235 ~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l 313 (403)
..|++|...+.-.-..+++....+-+.-+...+. .-..||..++-.|++..-++.|-.++.+-...-. -.+...|+ +
T Consensus 274 elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-L 351 (459)
T ss_pred cCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-H
Confidence 3455554443322244555555555555555432 2345666666677777777777666654221110 12233333 2
Q ss_pred HHHHH-ccCChHHHHHHHHHHH
Q 015673 314 IYHLC-GSGNFDKAYKVFKESV 334 (403)
Q Consensus 314 ~~~~~-~~~~~~~a~~~~~~~~ 334 (403)
+.++. ..-..++|.+-+..+.
T Consensus 352 LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 33332 2344556655555443
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=9.7e-08 Score=78.06 Aligned_cols=304 Identities=14% Similarity=0.055 Sum_probs=204.7
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YLC 101 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 101 (403)
....-...+...+...|++..|+..|..+++.+ |. +-.++..-...|...|+-..|+.-+..+.. ..|+-. .-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--ch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 344455667888999999999999999999887 54 334444557778888999999888888874 223221 122
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCc--HHH------------HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRS--VIS------------FNALLFACTRSRLYDKVPILFDEIPKKYNLSPD 167 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (403)
.-...+.+.|.++.|..-|+.+++...... ... ....+..+.-.|+...|+.....+++ -.+-|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcch
Confidence 345667889999999999999987653211 111 12233445667888888888888876 44557
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----HH
Q 015673 168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY----NV 243 (403)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 243 (403)
...|..-..+|...|++..|+.-++...+... -+..++.-+-..+...|+.+.++...++.++. .||.... ..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 77788888888888888888877777666533 35556666677788888888888888888875 4553221 11
Q ss_pred H------Hhh----hcCCChHHHHHHHHHHHHCCCCCChh---cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673 244 R------ITN----TYGGDPERLKELIDEMRDAGLKPDTI---SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF 310 (403)
Q Consensus 244 l------l~~----~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (403)
+ +.. ...+++.++.+-.+...+........ .+..+-.++...+++.+|++...++++.. +.|..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence 1 111 14566677777777766653221122 23344556667777888888887777653 3346677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.--..+|.-...++.|+.-|+...+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777777777778888888888777654
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=2.5e-07 Score=81.80 Aligned_cols=193 Identities=11% Similarity=0.208 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHHHHHHhhh-cCC
Q 015673 182 GSSDKALELLNEMENKGVEVT------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAYNVRITNT-YGG 251 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~-~~~ 251 (403)
|+..+-...+.++.+. +.|. ...|..+...|-..|+.+.|..+|++..+...+--. ..|..-...- ++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4444455555555443 2221 234666777777888888888888887765432211 1121111222 667
Q ss_pred ChHHHHHHHHHHHHCCCC----------C-------ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLK----------P-------DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 314 (403)
+++.|.++++.....--. | +...|...++.--..|-++....+|+.+++..+. ++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 777777777665432100 0 1223444444444566666677777766655422 222222222
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCchh
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDF-NTVKLLVEGLVK---KKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
..+-.+.-++++.+++++-+.....|+. ..|+..+.-+.+ .-+.+.|..+|++..+.-||..
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 2333444455555555554443323332 344444433333 2235556666666665555443
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=8.7e-08 Score=78.67 Aligned_cols=170 Identities=10% Similarity=-0.013 Sum_probs=105.0
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
+..+....++..|+.+++.....+-.- ...+-..+..++.+.|++++|...++.+.. ...++...+..|.-++.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH
Confidence 667778889999999999887655222 223334578888999999999999999885 44455666777887888889
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CcH--------------HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC
Q 015673 112 MFDHAMRTFDQMDELGTP-----------RSV--------------ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP 166 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~-----------~~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 166 (403)
.+.+|..+-....+.... -|. ..-.+|.......-.+++|+++|.++... .|
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 999998776655321100 000 01111222222223467788888777642 34
Q ss_pred chHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673 167 DKISYGL-LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT 208 (403)
Q Consensus 167 ~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (403)
+....|. +.-+|.+..-++-+.+++.-..+. ++.++...|.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NL 224 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNL 224 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHH
Confidence 4444443 334566777777777777666554 3333333333
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.3e-08 Score=83.31 Aligned_cols=327 Identities=10% Similarity=0.104 Sum_probs=167.4
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC-----------CCH---
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI-----------TQE--- 97 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~--- 97 (403)
...+...|++++|+..|..+.... ..+...+..+.-++.-.|.+.+|..+-++..+.+.. .+.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 445567899999999999988755 224444555666666667777777776665421100 000
Q ss_pred -----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HHHhcCCcCcHHHHHHHchhhCCCC
Q 015673 98 -----------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF-ACTRSRLYDKVPILFDEIPKKYNLS 165 (403)
Q Consensus 98 -----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (403)
.--.+|.......-.+++|+++|.++...+ |.-...|.-+. +|.+..-++-+.++++...++ ++
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p 216 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP 216 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence 001123333333345788889988887643 45555555444 355666666677777666653 22
Q ss_pred CchHHHHHHHHHHHhc--CCh---------------------------------HHHHHHHHHHHhCCCCCchhhHHHHH
Q 015673 166 PDKISYGLLLKSHCDS--GSS---------------------------------DKALELLNEMENKGVEVTTVTYTTVL 210 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~--~~~---------------------------------~~a~~~~~~~~~~~~~~~~~~~~~ll 210 (403)
.+....|.......+. |+. +.|++++-.+.+. =+..-..++
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~ 292 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLI 292 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhhe
Confidence 2333333322211111 111 1111111111110 012223344
Q ss_pred HHHHhcCCHHHHHHHHHHH--------------------------------------HHcCCCCchHHHHHHHhh-h-cC
Q 015673 211 NCLYKQGNAEEAERLWSEM--------------------------------------EKKGVDLDVAAYNVRITN-T-YG 250 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~ll~~-~-~~ 250 (403)
--|.+.+++.+|..+.+++ -+++..-|...-..-+.. + ..
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred eeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 4455556666665555443 222222111111111111 1 23
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCChHHHHHH
Q 015673 251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT-WIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 329 (403)
.++++.+..+..+...=...|...+ .+.++++..|.+.+|.++|-.+....++ |..+|.+ +.++|.+++..+.|+++
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444444444444433222233333 3677777888888888888766644433 4455544 45677888888888777
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 330 FKESVMVHKIPDF-NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+-++ +.+.+. ..+..+..-|.+.+.+=-|-+.|+.+.. ..|+
T Consensus 451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~ 493 (557)
T KOG3785|consen 451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPT 493 (557)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCC
Confidence 6543 222222 3334455667777877777777777755 3343
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-07 Score=80.81 Aligned_cols=211 Identities=13% Similarity=0.049 Sum_probs=147.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh----
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT---- 246 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~---- 246 (403)
...+.++..+..+++.|.+-+....+.. .+..-++....+|...|.+..+...-....+.|.. ...-|+.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456677777788888888888887764 46666677777888888888777776666655422 2222333222
Q ss_pred ---hh-cCCChHHHHHHHHHHHHCCCCCChhcH-------------------------HHHHHHHHhcCChHHHHHHHHH
Q 015673 247 ---NT-YGGDPERLKELIDEMRDAGLKPDTISY-------------------------NFLMTCYCKNEMMDEAKKVYEG 297 (403)
Q Consensus 247 ---~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~A~~~~~~ 297 (403)
++ ..++++.+...|++.......|+...= ..-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 22 457778888888776554334332210 1113456788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (403)
+++.. +-|...|....-+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|++..+ ..|+..
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale-~dp~~~ 460 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE-LDPSNA 460 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhH
Confidence 99886 6678899999999999999999999988888875 55666777677778788899999999999987 445544
Q ss_pred HHHHHHHHHh
Q 015673 378 RAWKKVEEEL 387 (403)
Q Consensus 378 ~~~~~l~~~~ 387 (403)
.....+.++.
T Consensus 461 e~~~~~~rc~ 470 (539)
T KOG0548|consen 461 EAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=2.3e-07 Score=82.09 Aligned_cols=334 Identities=16% Similarity=0.108 Sum_probs=168.6
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
+-.|...|+.++|.+........+ ..+...|+.+.-.+....++++|+..|.... ...+.+...+..+.-.-++.+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred cchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHH
Confidence 334444455555555555444433 1233444444444444455555555555544 233344444444444444445
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH------HHHHhcCChH
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL------KSHCDSGSSD 185 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~ 185 (403)
+++.....-....+..+ .....|..+..++.-.|++..|..+++...+...-.|+...+.... ....+.|.++
T Consensus 124 d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 55554444444444221 1233445555555555666666666666655432234444443322 2233455555
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDE 262 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~ 262 (403)
.|.+.+..-... +.-....-..-...+.+.+++++|..++..++.. .||...|...+..+ ..+..+....+|..
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555555544332 2112222233455566777777777777777775 56666665554443 12233333355555
Q ss_pred HHHC---CCCCCh--------hcHHHHHHHHH----hcC-------------ChHHHHHHHHHHH--------HCC----
Q 015673 263 MRDA---GLKPDT--------ISYNFLMTCYC----KNE-------------MMDEAKKVYEGLE--------ENG---- 302 (403)
Q Consensus 263 ~~~~---~~~~~~--------~~~~~l~~~~~----~~~-------------~~~~A~~~~~~~~--------~~~---- 302 (403)
..+. ...|-. .-+...++-|. +.| +..++- +++++. ..|
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCc
Confidence 5432 000100 00111111111 111 111111 222221 111
Q ss_pred ------CCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 303 ------CSPNATT--FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 303 ------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
-+|.... +-.++..+-+.|+++.|..+++..+..- |.-++.|..-.+.+...|+.++|..++++..+-..+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 1344443 3456778888999999999999988643 333466767789999999999999999999875555
Q ss_pred h
Q 015673 375 N 375 (403)
Q Consensus 375 ~ 375 (403)
|
T Consensus 438 D 438 (700)
T KOG1156|consen 438 D 438 (700)
T ss_pred h
Confidence 5
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=2.9e-07 Score=83.12 Aligned_cols=361 Identities=12% Similarity=0.037 Sum_probs=230.1
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCCHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK-ITQEPYLCN 102 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 102 (403)
++..|..+.-++...|++..+.+.|++....- ......|..+...+...|.-..|..+++....... +++...+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~---~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS---FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 45678888888899999999999999998766 34567788889999999999999999988764332 333333433
Q ss_pred HHHHH-hccCCHHHHHHHHHHHHhC--CC--CCcHHHHHHHHHHHHhc-----------CCcCcHHHHHHHchhhCCCCC
Q 015673 103 LIRSY-GQAGMFDHAMRTFDQMDEL--GT--PRSVISFNALLFACTRS-----------RLYDKVPILFDEIPKKYNLSP 166 (403)
Q Consensus 103 l~~~~-~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 166 (403)
....| -+.+..++++..-.++.+. +. ......|..+.-+|... ....++++.+++..+.....|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33333 3457777877777766551 11 12334444444444332 123467788888876544555
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---------
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK-GVDL--------- 236 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------- 236 (403)
+...|- .--|+..++++.|.+...+..+.+-..+...|..+..++...+++.+|+.+.+..... |...
T Consensus 479 ~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 444433 3346677899999999999998866678899999999999999999999998877653 1100
Q ss_pred ---------chHHHHHHHhhhc------------------------CCChHHHHHHHHHH----H----HCC--------
Q 015673 237 ---------DVAAYNVRITNTY------------------------GGDPERLKELIDEM----R----DAG-------- 267 (403)
Q Consensus 237 ---------~~~~~~~ll~~~~------------------------~~~~~~a~~~~~~~----~----~~~-------- 267 (403)
...|...++.... .++..++.+....+ . ..|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011111111110 00111111111110 0 000
Q ss_pred -CCCCh--------hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673 268 -LKPDT--------ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338 (403)
Q Consensus 268 -~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (403)
+.|+. ..|......+.+.+..++|...+.+..+.. +.....|......+...|...+|.+.|......+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 01111 123344556667777788877777766553 3445566666677778888888888888877665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 339 IPDFNTVKLLVEGLVKKKKIKEAKG--VIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
|.++....++..++.+.|+..-|.. ++..+.+ ..|....+|..+......-|+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-LDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccc
Confidence 5566777888888888888777777 8888876 666667788887776655554
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=5.6e-07 Score=79.71 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL---------- 236 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 236 (403)
.|..+...|-..|+++.|..+|++..+...+-- ..+|......-.++.+++.|+++.+......-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 467778889999999999999999987654322 3456666666678888999999888765431111
Q ss_pred -------chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673 237 -------DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308 (403)
Q Consensus 237 -------~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (403)
+...|...+... ..|-++....+++.+.+..+- ++.........+-...-++++.++|++-+..-..|+..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 122333334434 678889999999999877543 33322223334446677899999998876654355543
Q ss_pred -HHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-hHHHHH
Q 015673 309 -TFRTWIYHLCG---SGNFDKAYKVFKESVMVHKIPDFNT--VKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN-VLRAWK 381 (403)
Q Consensus 309 -~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 381 (403)
.|+..+..+.+ .-..+.|..+|++.++ +.+|...- |......-.+-|....|+.++++.....++. ....|+
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn 626 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777776655 3468999999999998 65665432 2222333345688999999999987765544 344565
Q ss_pred HHH
Q 015673 382 KVE 384 (403)
Q Consensus 382 ~l~ 384 (403)
-.+
T Consensus 627 i~I 629 (835)
T KOG2047|consen 627 IYI 629 (835)
T ss_pred HHH
Confidence 444
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=2.8e-09 Score=89.13 Aligned_cols=250 Identities=15% Similarity=0.099 Sum_probs=129.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
++-+.-.|++..++.-.+ ..............-+.+++...|+++.++ ..+.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 444555677777775555 322111112223344667777777766543 3333322 45666655555444433444
Q ss_pred CcHHHHHHHchhhCCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLS-PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (403)
+.++.-+++.... ... .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++
T Consensus 83 e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 83 ESALEELKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HCHHHHHHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555444333 222 23333333335566677788777777542 245556667777777888888888777
Q ss_pred HHHHcCCCCchHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 228 EMEKKGVDLDVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
.|.+. ..|....+ +..++ ..+.+..|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+
T Consensus 156 ~~~~~--~eD~~l~q-La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI--DEDSILTQ-LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC--SCCHHHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc--CCcHHHHH-HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 77664 23333222 22222 123466666666666543 34555666666666666666666666666655443
Q ss_pred CCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 015673 303 CSPNATTFRTWIYHLCGSGNF-DKAYKVFKESVM 335 (403)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 335 (403)
+-++.+...++.+....|+. +.+.+++.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33445555555555555555 445555555554
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=2e-09 Score=89.99 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 015673 288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVIR 366 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 366 (403)
+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+ +-++.++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444444444444444444444333 23334444444444444443 33444444
Q ss_pred HHHH
Q 015673 367 TIKK 370 (403)
Q Consensus 367 ~~~~ 370 (403)
++++
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2e-08 Score=87.46 Aligned_cols=254 Identities=14% Similarity=0.039 Sum_probs=139.6
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC
Q 015673 70 RRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149 (403)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 149 (403)
..+.+.|++.+|.-.|+.... ..|.+...|..|.......++-..|+..+.+..+.++. +..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVk-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVK-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHh-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 334455555555555555542 34444555555555555555555555555555554433 4445555555555555555
Q ss_pred cHHHHHHHchhhC-----CCC--CchHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673 150 KVPILFDEIPKKY-----NLS--PDKISYGLLLKSHCDSGSSDKALELLNEM-ENKGVEVTTVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 150 ~a~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~ 221 (403)
.|+..++..+... ... ++...-.. ..+.....+....++|-++ .+.+..+|..+...|.-.|...|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 5555555543321 000 00000000 1112222233334444333 344444667777777777777778888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 222 AERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
|...|+..+... +.|...||.+=..+ ...+.++|+..|.+.++. +|+ +.+...|..+|...|.+++|...|-..+
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888887777653 23556677766666 666777788888777765 555 2344446777778888888877776644
Q ss_pred H---C------CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673 300 E---N------GCSPNATTFRTWIYHLCGSGNFDKAYKVF 330 (403)
Q Consensus 300 ~---~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (403)
. . +..++..+|..|=.++...++.|-+....
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 2 1 11234556776666677777766555443
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=1.2e-06 Score=79.25 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=98.7
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..+..+++...+.+..... +-....|......+...|.+++|.+.|......+ +-+.....++..++...|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred hcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHH
Confidence 6677777777777766542 3345567767778888999999999999988764 3456688899999999998888877
Q ss_pred --HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 329 --VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 329 --~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
++.++.+.+ +.++..|..+...+.+.|+.+.|.+.|....+-
T Consensus 740 ~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 740 RSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999888 788999999999999999999999999998764
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=3.5e-06 Score=84.01 Aligned_cols=339 Identities=11% Similarity=-0.007 Sum_probs=199.7
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC------CC--HHHHHHHHH
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI------TQ--EPYLCNLIR 105 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~ 105 (403)
.+...|+++.+...++.+.... ...+..........+...|+++++..++......... +. ......+..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~--~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEV--LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHH--HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3444556666555555542211 0111122233445556778888888888776432111 11 111222445
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC--CC--chHHHHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSV----ISFNALLFACTRSRLYDKVPILFDEIPKKYNL--SP--DKISYGLLLKS 177 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~ 177 (403)
.+...|++++|...++.....-...+. ...+.+...+...|++++|...+.+......- .+ ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566789999999999887653211121 23455566677889999998888877542111 11 12345566777
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCc--hHHHHHHHh
Q 015673 178 HCDSGSSDKALELLNEMENK----GVE--V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG--VDLD--VAAYNVRIT 246 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~ll~ 246 (403)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999888876542 211 1 22334455666777899999998888775531 1122 112222222
Q ss_pred hh-cCCChHHHHHHHHHHHHCCCCCC-hhcH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 015673 247 NT-YGGDPERLKELIDEMRDAGLKPD-TISY-----NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYH 316 (403)
Q Consensus 247 ~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~ 316 (403)
.. ..|+++.|...+........... ...+ ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 23 78999999988888754211111 1111 11224445678888888887765532211111 113456677
Q ss_pred HHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 317 LCGSGNFDKAYKVFKESVMV----HKIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
+...|+.++|...+++.... +... ...+...+..++.+.|+.++|...+.+..+...+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 88899999999999887654 2222 2345666778899999999999999999875433
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=5.7e-06 Score=68.01 Aligned_cols=277 Identities=14% Similarity=0.019 Sum_probs=202.9
Q ss_pred CCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673 16 AAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT 95 (403)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (403)
++..+.|.+-..+......|...|+..-|+.=+++.++.. |+ ...+-..-...+.++|.+++|..-|+.+.......
T Consensus 63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pD-F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PD-FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--cc-HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 3444555555667777888999999999999999999887 53 22222344667889999999999999998543322
Q ss_pred CHH--------------HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673 96 QEP--------------YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 96 ~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 161 (403)
... .....+..+.-.|+...|+.....+++..+- |...+..-..+|...|+...|+.-++...+
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~ask- 217 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASK- 217 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 111 1223445566789999999999999997654 888888889999999999999887777754
Q ss_pred CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHH----HH---------HHHHHhcCCHHHHHHHHHH
Q 015673 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYT----TV---------LNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l---------l~~~~~~~~~~~a~~~~~~ 228 (403)
-...+..++.-+-..+...|+.+.++..+++..+. .||...+. .+ +......++|.+++...+.
T Consensus 218 -Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 218 -LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEK 294 (504)
T ss_pred -ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22345667777888888999999999999998874 34533221 11 2233456788888888888
Q ss_pred HHHcCCCCchHHHHHH--Hhhh--cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 229 MEKKGVDLDVAAYNVR--ITNT--YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~l--l~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
..+.........++.. +..| ..+++.+|++.-.+.... .| |..++.--..+|.-..+++.|+.-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8877544344444432 2333 678999999999998875 44 47788888899999999999999999998864
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-06 Score=75.75 Aligned_cols=322 Identities=13% Similarity=0.055 Sum_probs=211.6
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
+|++...|.....++++.|++++|++=-.+.++.+ |. +...|.....++...|++++|+.-|.+-.. ..+.+...+
T Consensus 32 ~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~-w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~-~d~~n~~L~ 107 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PD-WAKGYSRKGAALFGLGDYEEAILAYSEGLE-KDPSNKQLK 107 (539)
T ss_pred CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--Cc-hhhHHHHhHHHHHhcccHHHHHHHHHHHhh-cCCchHHHH
Confidence 45578888888888999999999988877777777 43 667788888888888999999988888763 444555555
Q ss_pred HHHHHHHhccCC---------------------------------------------------HHHHHHHHHHHH-----
Q 015673 101 CNLIRSYGQAGM---------------------------------------------------FDHAMRTFDQMD----- 124 (403)
Q Consensus 101 ~~l~~~~~~~~~---------------------------------------------------~~~A~~~~~~~~----- 124 (403)
..+..++..... +..|.-.+....
T Consensus 108 ~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~ 187 (539)
T KOG0548|consen 108 TGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFY 187 (539)
T ss_pred HhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccc
Confidence 555555511100 000000000000
Q ss_pred hC-------CCCC---------c-------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 125 EL-------GTPR---------S-------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 125 ~~-------~~~~---------~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
.. +..| . ..-...+.++..+..++..+++.+....+. .-+..-++...
T Consensus 188 ~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~a 264 (539)
T KOG0548|consen 188 ASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIA 264 (539)
T ss_pred ccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHH
Confidence 00 0001 0 011234555555566667777777776643 23555567777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH-------
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTT-------VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY------- 241 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 241 (403)
.+|...|.+..+...-+...+.|.. ...-|+. +..+|.+.++++.++..|.+.......|+...-
T Consensus 265 A~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~ 343 (539)
T KOG0548|consen 265 AVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKA 343 (539)
T ss_pred HHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 8888888888887777777665542 2222322 344666778899999999887665444442211
Q ss_pred -------------------HHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 242 -------------------NVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 242 -------------------~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
......+..|++..|...|.+++.+. +-|...|....-+|.+.|.+..|+.-.+..++.+
T Consensus 344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 11122237799999999999999986 5578899999999999999999999988888774
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (403)
++....|..-..++....++++|.+.|++.++.+ +.+......+.++..
T Consensus 423 -p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 423 -PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 4445566666677778889999999999988766 333444444444443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=3.2e-07 Score=72.61 Aligned_cols=162 Identities=11% Similarity=0.128 Sum_probs=122.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM 288 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (403)
+..|...|+++.+....+.+.. |. ..+ ..++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4467788888776544432211 11 011 2456677777777777664 55788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 289 DEAKKVYEGLEENGCSPNATTFRTWIYHL-CGSGN--FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++.++.+ +.+..++..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999875 45777888888764 67777 599999999999877 667889999999999999999999999
Q ss_pred HHHHHhCCchhHHHHHHHHHHhC
Q 015673 366 RTIKKKFPPNVLRAWKKVEEELG 388 (403)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~ 388 (403)
+++.+..+|+.. ...+++...
T Consensus 168 ~~aL~l~~~~~~--r~~~i~~i~ 188 (198)
T PRK10370 168 QKVLDLNSPRVN--RTQLVESIN 188 (198)
T ss_pred HHHHhhCCCCcc--HHHHHHHHH
Confidence 999998888764 234444433
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.5e-07 Score=80.91 Aligned_cols=255 Identities=12% Similarity=0.065 Sum_probs=184.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
-..-+.+.|+..+|.-.|+..++.++. +..+|..|...-..+++-..|+..+.+..+ --+-|....-.|.-.|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhh
Confidence 344466899999999999999988765 899999999999999999999999999975 33345667778888899999
Q ss_pred ChHHHHHHHHHHHhCCCC--------CchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCchHHHHHHHhhh-cCCC
Q 015673 183 SSDKALELLNEMENKGVE--------VTTVTYTTVLNCLYKQGNAEEAERLWSEME-KKGVDLDVAAYNVRITNT-YGGD 252 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~-~~~~ 252 (403)
.-..|++.|+.-+....+ ++...-.. .............++|-++. ..+..+|......|=..| ..|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999887554211 00000000 11222233445555555554 444334555555544445 8899
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHH
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
+++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++. +|+. .....|.-+|...|.+++|.+.|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998863 336789999999999999999999999999987 6664 466678889999999999999887
Q ss_pred HHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 332 ESVMVHK---------IPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 332 ~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
.++...- .++..+|..|=.++.-.++.|-+.++.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 7654311 134567777777787788877565544
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=1e-07 Score=78.60 Aligned_cols=192 Identities=11% Similarity=-0.006 Sum_probs=132.0
Q ss_pred CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC
Q 015673 19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ 96 (403)
Q Consensus 19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (403)
+..+.....+...+..+...|++++|+..|+.+.... |.. ...++..+..++...|++++|...++++........
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3444556677888889999999999999999998887 432 234567788999999999999999999875332221
Q ss_pred H--HHHHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC
Q 015673 97 E--PYLCNLIRSYGQA--------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP 166 (403)
Q Consensus 97 ~--~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 166 (403)
. ..+..+..++.+. |++++|.+.|+.+....+. +...+..+..... ..... .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----------~~~~~-~------ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----------LRNRL-A------ 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----------HHHHH-H------
Confidence 1 1344555666554 7889999999998875432 2223322221110 00000 0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGV--EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
.....+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1123566678899999999999999877521 223567888999999999999999988887765
No 99
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=5.5e-06 Score=70.51 Aligned_cols=131 Identities=8% Similarity=0.011 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (403)
..+-..+...+..++|+.+++++++..+. +..+|+....++...| ++++++..++++.+. .+-+..+|+.....+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHH
Confidence 33444455677888888888888875533 4556666666666666 567888888887763 3345556666555555
Q ss_pred hcCCh--HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 015673 180 DSGSS--DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD 235 (403)
Q Consensus 180 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (403)
+.|+. ++++.+++++.+... -+..+|+....++...|+++++++.++++++.++.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 56653 567777777777633 46777887777888888888888888888877544
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.2e-06 Score=84.13 Aligned_cols=208 Identities=16% Similarity=0.078 Sum_probs=101.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCC---CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc
Q 015673 92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTP---RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD 167 (403)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (403)
..|.+...|...+....+.++.++|.+++++++.. ++. --...|.++++.-...|.-+...++|+++.+-+ -.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---ch
Confidence 34444455666666666666666666666665442 110 012345555555444555555555666554321 11
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673 168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247 (403)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 247 (403)
...|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-..-...-+-.-...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 233555566666666666666666666554 3334455666666666666656666666555543111111111111111
Q ss_pred h--cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 248 T--YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 248 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
+ +.|+.+++..+|+.+.... +--...|+..++.-.+.|+.+.+..+|+++...++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 1 4455555555555544432 112334555555555555555555555555544433
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.3e-05 Score=70.75 Aligned_cols=332 Identities=11% Similarity=0.086 Sum_probs=191.9
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
|.+...++.-+-++.+.++|++|+.+.+.-.... . ..... ..-+.+..+.+..++|...++-+. ..+..+..
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~-~~~~~-fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--V-INSFF-FEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--h-cchhh-HHHHHHHHHcccHHHHHHHHhccc----ccchHHHH
Confidence 4455667777788888899999986554433211 0 01111 123445567788888888877332 22233445
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCC---------------------------CcHHHHHHHH---HHHHhcCCcCcH
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTP---------------------------RSVISFNALL---FACTRSRLYDKV 151 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~~ll---~~~~~~~~~~~a 151 (403)
.-...+.+.|++++|+.+|+.+.+.+.+ ....+|..+. ..+...|++.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 5566677888899998888888554322 0112333332 235567888899
Q ss_pred HHHHHHchhhC------CCCC--ch-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchh--------------
Q 015673 152 PILFDEIPKKY------NLSP--DK-----ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV-------------- 204 (403)
Q Consensus 152 ~~~~~~~~~~~------~~~~--~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------- 204 (403)
++++....+.+ +-.- +. ..--.+.-++...|+.++|.+++...++.+. +|..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~ 273 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSK 273 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhcc
Confidence 88888772211 0000 00 1122344556678888888888887766532 1211
Q ss_pred -------------------------------------------------------------------hHHHHHHHHHh--
Q 015673 205 -------------------------------------------------------------------TYTTVLNCLYK-- 215 (403)
Q Consensus 205 -------------------------------------------------------------------~~~~ll~~~~~-- 215 (403)
.+.+++..+.+
T Consensus 274 d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 274 DQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVR 353 (652)
T ss_pred ccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH
Confidence 00111111100
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchH--HHHHHHhhh-cCCChHHHHHHHH--------HHHHCCCCCChhcHHHHHHHHHh
Q 015673 216 QGNAEEAERLWSEMEKKGVDLDVA--AYNVRITNT-YGGDPERLKELID--------EMRDAGLKPDTISYNFLMTCYCK 284 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~-~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~ 284 (403)
...+..+..++...-+. .|... ..-..+... ..|+++.|.+++. .+.+.+..|. +...+...+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~ 429 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYK 429 (652)
T ss_pred HHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHh
Confidence 01122333333333322 23321 111222222 8899999999999 5555554444 45566777788
Q ss_pred cCChHHHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015673 285 NEMMDEAKKVYEGLEEN--GCSPNATTFRT----WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (403)
.++.+.|..++.+.... .-.+......+ ....-.+.|+.++|..+++++.+.+ ++|..+...++.+|++.. +
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~ 507 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-P 507 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-H
Confidence 88888888888776531 01222233333 3334456799999999999999866 789999999999998764 5
Q ss_pred HHHHHHHHHH
Q 015673 359 KEAKGVIRTI 368 (403)
Q Consensus 359 ~~a~~~~~~~ 368 (403)
+.|..+-+.+
T Consensus 508 eka~~l~k~L 517 (652)
T KOG2376|consen 508 EKAESLSKKL 517 (652)
T ss_pred HHHHHHhhcC
Confidence 6777665554
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=2.2e-07 Score=69.51 Aligned_cols=120 Identities=8% Similarity=-0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
+.+++...+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555554 344 35556778888999999999999988775 557788888888999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673 337 HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV 383 (403)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (403)
+ +.+...+..+..++...|++++|+..|++..+ ..|+....|...
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-~~p~~~~~~~~~ 132 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-MSYADASWSEIR 132 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHH
Confidence 6 67788888899999999999999999999887 444544455433
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.88 E-value=4e-05 Score=67.05 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673 20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99 (403)
Q Consensus 20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (403)
..|.+..+|..+++-+..+ ..+++.+.++++...- |. +...|..-+....+.++++..+.+|.++... ..+.+.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--P~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDL 88 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--PS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDL 88 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--CC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhH
Confidence 3556778899999988777 9999999999998766 44 5567888899999999999999999998742 233445
Q ss_pred HHHHH
Q 015673 100 LCNLI 104 (403)
Q Consensus 100 ~~~l~ 104 (403)
|...+
T Consensus 89 W~lYl 93 (656)
T KOG1914|consen 89 WKLYL 93 (656)
T ss_pred HHHHH
Confidence 54433
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=7.7e-07 Score=73.33 Aligned_cols=187 Identities=15% Similarity=0.076 Sum_probs=127.3
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH---
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT---VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA--- 239 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 239 (403)
.....+..+...+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++++.+........
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456678888888999999999999999987752 2222 466778889999999999999999998864322221
Q ss_pred HHHHHHhhhcC--------CChHHHHHHHHHHHHCCCCCChh-cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673 240 AYNVRITNTYG--------GDPERLKELIDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF 310 (403)
Q Consensus 240 ~~~~ll~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (403)
.+......+.. |+++.|.+.++.+... .|+.. .+..+.... . .... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~~------~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHHH------HH--------HHH
Confidence 22222222222 6778888888888766 34332 222111110 0 0000 00 111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
..+...+.+.|++++|+..+++.++.. -+.....+..+..++.+.|++++|...++.+..+++
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 245667889999999999999998763 123457888999999999999999999999987664
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=4.3e-05 Score=66.82 Aligned_cols=138 Identities=12% Similarity=0.202 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 015673 253 PERLKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-NATTFRTWIYHLCGSGNFDKAYKVF 330 (403)
Q Consensus 253 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (403)
.+....+++++... .+.|+ -+|..++..-.+..-+..|..+|.+..+.+..+ +..++++++.-+|. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44445555555443 22333 356677777777888888889998888776666 56677777766664 6778888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCch-hHHHHHHHHHHhCCCCCC
Q 015673 331 KESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPN-VLRAWKKVEEELGLVPAP 393 (403)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 393 (403)
+--+... ..++.-....++-+...++-..+..+|++.... .+++ ....|..+++--...||.
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 8765543 345555567788888888888888888888775 4433 345788888766666654
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.8e-06 Score=81.77 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=182.2
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 015673 45 LDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ----EPYLCNLIRSYGQAGMFDHAMRTF 120 (403)
Q Consensus 45 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 120 (403)
.+=|++..... |. +...|-..+......++++.|.++.+++...-.... ...|.++++.-..-|.-+...++|
T Consensus 1444 aeDferlvrss--PN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1444 AEDFERLVRSS--PN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred HHHHHHHHhcC--CC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34455555555 43 556677777788899999999999999875432222 235777777777778889999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 015673 121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE 200 (403)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (403)
+++.+.. -....|..|...|.+.+.+++|.++++.|.++++ -....|...+..+.+.++-+.|..++.++.+. .+
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence 9998842 2355688999999999999999999999999766 56678999999999999999999999998775 32
Q ss_pred C--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh--hcH
Q 015673 201 V--TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDT--ISY 275 (403)
Q Consensus 201 ~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 275 (403)
- ......-.+..-.+.|+.+.+..+|+......++ -...|+..+..- ++|+.+.+..+|+++...++.|.. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 2 3344555667778999999999999999876422 455788888888 999999999999999998776643 344
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 015673 276 NFLMTCYCKNEMMDEAKKV 294 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~ 294 (403)
...+..--+.|+-..+..+
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 5455544455555444333
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2.5e-05 Score=77.99 Aligned_cols=338 Identities=9% Similarity=0.007 Sum_probs=200.0
Q ss_pred HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673 29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (403)
......+...|++.+|+..+..+.... ............+...|+++.+..+++.+.......+..........+.
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~----~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQ----LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHH----HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 334455566667766665444432111 0111112233445567888877777776532111112222334455566
Q ss_pred ccCCHHHHHHHHHHHHhCCC------CCc--HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC---chHHHHHHHHH
Q 015673 109 QAGMFDHAMRTFDQMDELGT------PRS--VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP---DKISYGLLLKS 177 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~------~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 177 (403)
..|++++|...+......-. .+. ......+...+...|++++|...+++......... .....+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 78999999999987754211 111 11222333456678999999999998765211111 11345666777
Q ss_pred HHhcCChHHHHHHHHHHHhC----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHH
Q 015673 178 HCDSGSSDKALELLNEMENK----GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK----GVD--L-DVAAYNVRI 245 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll 245 (403)
+...|+++.|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 88899999999999887643 11 111234556677888999999999998876553 211 1 111222222
Q ss_pred hhh-cCCChHHHHHHHHHHHHCC--CCC--ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 015673 246 TNT-YGGDPERLKELIDEMRDAG--LKP--DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-PNATTF-----RTWI 314 (403)
Q Consensus 246 ~~~-~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~ 314 (403)
..+ ..|++++|...+.+..... ..+ ....+..+...+...|+.++|...+.......-. .....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 223 7799999999998875431 112 1334445666778899999999999887542101 111111 1122
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
..+...|+.+.|..++........... ...+..+..++...|++++|...+++...
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344568899999999877554221111 11234577788899999999999998865
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=3.1e-06 Score=80.33 Aligned_cols=246 Identities=17% Similarity=0.106 Sum_probs=152.8
Q ss_pred CCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673 16 AAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT 95 (403)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (403)
...+=.+.+...+..++..+...+++++|+++.+...+.. |. ....|..+...+.+.++.+++..+
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~-~i~~yy~~G~l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KK-SISALYISGILSLSRRPLNDSNLL----------- 87 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--Cc-ceehHHHHHHHHHhhcchhhhhhh-----------
Confidence 3344455666778888888888899999999998777776 44 333344444466666664444333
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
.++.......++.-...++..|...+ -+..++..+..+|-+.|+.+++..+|+++.+. -+-|+...|.+.
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~A 157 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLA 157 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHH
Confidence 34444444555544444455555532 34457777778888888888888888888764 255677778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHH
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPER 255 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 255 (403)
..|... ++++|.+++.+.... +...+++.++..+|.++.... |+.. +.
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~--------------d~ 205 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF--------------DF 205 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccc--------------hH
Confidence 888777 888888887776553 555667777777777777652 2221 11
Q ss_pred HHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673 256 LKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318 (403)
Q Consensus 256 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (403)
-..+.+.+... |..--..++-.+-..|...++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 206 f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 12222222221 212234455556667777777888888888777664 335555555555554
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.6e-05 Score=73.09 Aligned_cols=243 Identities=13% Similarity=0.077 Sum_probs=135.6
Q ss_pred CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673 19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP 98 (403)
Q Consensus 19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (403)
-+.+.++........++...+-+.+-+++++++.-.+..-.......+.++-...+.. ..+..+..+++.. -..|+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdn-yDa~~-- 1053 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDN-YDAPD-- 1053 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhcc-CCchh--
Confidence 3344455666677888889999999999999987655222223333455554444443 3344455555432 11121
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC----------------------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDEL----------------------GTPRSVISFNALLFACTRSRLYDKVPILFD 156 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 156 (403)
+...+...+-+++|..+|+..... .+ -.+..|..+..+-.+.|.+.+|++-|-
T Consensus 1054 ----ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 233344445555555555543210 01 134556666666666777777666555
Q ss_pred HchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673 157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL 236 (403)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (403)
+. .|+..|..++....+.|.|++-.+++....+....|.. -+.|+-+|++.++..+..+.+. -|
T Consensus 1129 ka-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1129 KA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred hc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CC
Confidence 44 25666777777777777777777777777666554433 3466777777777666544431 24
Q ss_pred chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 015673 237 DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY 295 (403)
Q Consensus 237 ~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (403)
+......+-..| ..+.++.|.-+|. +...|..|...+...|++..|...-
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 444433333333 4455555544443 2233555555555666665555443
No 110
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=1.8e-05 Score=67.48 Aligned_cols=146 Identities=8% Similarity=-0.039 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 64 AQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG-MFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
++..+-..+...++.++|+.+..++.. ..+.+..+|+....++...| ++++++..++.+.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 334444555666778888888888774 34444555665555566666 568888888888776554 556676665555
Q ss_pred HhcCCc--CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 015673 143 TRSRLY--DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLY 214 (403)
Q Consensus 143 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 214 (403)
.+.|+. ++++.+++++.+ .-+-|..+|+...-++...|+++++++.++++++.+.. +...|+....++.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 555553 566777777765 33456677777777777778888888888888776443 5566665554443
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=2.5e-06 Score=79.46 Aligned_cols=342 Identities=13% Similarity=0.029 Sum_probs=206.9
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLCNL 103 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 103 (403)
..|..+...|+...+...|...|+.+.+.+ + .+..+.......|++..+++.|..+.-...+ ..+. ....|...
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--a-tdaeaaaa~adtyae~~~we~a~~I~l~~~q-ka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--A-TDAEAAAASADTYAEESTWEEAFEICLRAAQ-KAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-hhhhhHHHHHHHhhccccHHHHHHHHHHHhh-hchHHHHHhhhhhc
Confidence 467778888888888888999999998887 3 3566677888999999999998888433321 1111 11224445
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH-HHHHHHHHHhcC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS-YGLLLKSHCDSG 182 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 182 (403)
.-.|.+.++...|+.-|+.....+++ |...|..+..+|.+.|++..|.++|++.. .+.|+... -.-....-+..|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhHHHHHHHHHHHHHhh
Confidence 56677889999999999999887765 88999999999999999999999998885 44454321 122233446778
Q ss_pred ChHHHHHHHHHHHhC------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCCchHHH--------
Q 015673 183 SSDKALELLNEMENK------GVEVTTVTYTTVLNCLYKQGNAEEAERLWSE-------MEKKGVDLDVAAY-------- 241 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~-------- 241 (403)
.+.+|...+...... +..--..++--+...+...|-..++...+++ ........+...|
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 898888888776542 1111112222222222223322223322222 2222111111111
Q ss_pred ---------------HHHHhhh-cCCCh---H---HHHHHHHHHHHCCCCCChhcHHHHHHHHHh----c----CChHHH
Q 015673 242 ---------------NVRITNT-YGGDP---E---RLKELIDEMRDAGLKPDTISYNFLMTCYCK----N----EMMDEA 291 (403)
Q Consensus 242 ---------------~~ll~~~-~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~A 291 (403)
.++.... ..+.. + .+.+.+-.-.+ ...+..+|..|...|.+ . .+...|
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 1111111 11111 1 11111111111 11234455555554443 1 223467
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
...+...++.. ..+..+|+.|... ...|++.-|...|-+-+... +....+|..+...+.+..+++.|...|.+.+.
T Consensus 803 i~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS- 878 (1238)
T KOG1127|consen 803 IRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS- 878 (1238)
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence 77777776553 3466677766554 66678888888887765544 56677888888889999999999999998876
Q ss_pred CCchhHHHHH
Q 015673 372 FPPNVLRAWK 381 (403)
Q Consensus 372 ~~~~~~~~~~ 381 (403)
..|++...|-
T Consensus 879 LdP~nl~~Wl 888 (1238)
T KOG1127|consen 879 LDPLNLVQWL 888 (1238)
T ss_pred cCchhhHHHH
Confidence 6666666774
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=4.1e-07 Score=81.73 Aligned_cols=243 Identities=9% Similarity=-0.028 Sum_probs=179.3
Q ss_pred CCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH
Q 015673 18 GSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE 97 (403)
Q Consensus 18 ~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (403)
.+..||-...-..+...+.+.|-...|+.+|++... |..++.+|...|+..+|..+..+... .+|+.
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~ 457 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE--KDPDP 457 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcc
Confidence 344555556666778888899999999999988743 44567788889988999888887764 56777
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
..|..+.+......-+++|.++++..... +-..+.....+.++++++.+.|+.-.+. -+....+|.....+
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCA 528 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHH
Confidence 78888888887777788888888776442 2222333334478888999888877653 33456778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK 257 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~ 257 (403)
..+.++++.|.+.|...... -+-+...||++-.+|.+.++..+|...+.+..+.+..+-.+.-|-++.+..-|.+++|.
T Consensus 529 ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 88999999999999988775 33466789999999999999999999999998887666666666666666889999999
Q ss_pred HHHHHHHHCCC-CCChhcHHHHHHHHH
Q 015673 258 ELIDEMRDAGL-KPDTISYNFLMTCYC 283 (403)
Q Consensus 258 ~~~~~~~~~~~-~~~~~~~~~l~~~~~ 283 (403)
+.+.++..... ..|..+...++....
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 99888764311 114444444444433
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=4.7e-06 Score=75.19 Aligned_cols=231 Identities=13% Similarity=0.118 Sum_probs=153.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..+...+...|-..+|+.+|+++. .|..++.+|...|+..+|..+..+..+ -+||...|..+......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 446677777788888888877654 355667777778888888777777654 35777777777777666
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI 260 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~ 260 (403)
..-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+.---...|+.-..+++.++++.|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 66677777777654322 11122222334678888888887776654333334444444444778888888888
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-C
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-I 339 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 339 (403)
....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+-|.+++|++.+.++..... .
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 8877652 2245678888888888888888888888888776 44556677777777888888888888887765421 1
Q ss_pred CCHHHHHHHHHHH
Q 015673 340 PDFNTVKLLVEGL 352 (403)
Q Consensus 340 ~~~~~~~~l~~~~ 352 (403)
.|......++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 2444444444433
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.79 E-value=4.2e-06 Score=79.45 Aligned_cols=262 Identities=8% Similarity=0.012 Sum_probs=159.2
Q ss_pred HHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 015673 49 SSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128 (403)
Q Consensus 49 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 128 (403)
.++.-.+..|. ...++..++..+...+++++|.++.+.... ..+....+|..+...+.+.++.+.+..+
T Consensus 19 ~r~~~~~~~p~-n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------- 87 (906)
T PRK14720 19 TRADANNYSLS-KFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKKSISALYISGILSLSRRPLNDSNLL--------- 87 (906)
T ss_pred hhcccccCCcc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCcceehHHHHHHHHHhhcchhhhhhh---------
Confidence 33334444343 445566777777777777777777775553 3333333444444456666665544443
Q ss_pred CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673 129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT 208 (403)
Q Consensus 129 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (403)
.++.......++.-+..+...+.. ..-+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.
T Consensus 88 --------~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn 155 (906)
T PRK14720 88 --------NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK 155 (906)
T ss_pred --------hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH
Confidence 222222333334333333333332 22244567778888888888888888888888875 457788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM 288 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (403)
+...|... +.++|.+++.+.... .+..+++..+.+++.++.... |+ ++
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~ 203 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DF 203 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcC--cc---------------cc
Confidence 88888888 888888888777654 124457777888888887652 22 22
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 289 DEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (403)
+.-..+.+.+... |..--..++-.+...|-..+++++++.+++.+++.. +-|.....-++.+|. +.+.. ...|++
T Consensus 204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee 279 (906)
T PRK14720 204 DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLED 279 (906)
T ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHH
Confidence 2233333333322 223334556666778888999999999999999876 446666777777776 33333 444444
Q ss_pred HH
Q 015673 368 IK 369 (403)
Q Consensus 368 ~~ 369 (403)
..
T Consensus 280 ~l 281 (906)
T PRK14720 280 YL 281 (906)
T ss_pred HH
Confidence 43
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.79 E-value=0.00014 Score=67.53 Aligned_cols=193 Identities=22% Similarity=0.180 Sum_probs=101.5
Q ss_pred hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
....+++.+|+.......+.. |. ..++-..=.-.+.+.|+.++|..+++.... ....+..+...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYG-LKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCCchHHHHHHHHHHHHHhhhh
Confidence 345566777777777776666 32 222222223334566777777766666543 22235556666666777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc----HHHHHHHc--------------------------------
Q 015673 115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK----VPILFDEI-------------------------------- 158 (403)
Q Consensus 115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~-------------------------------- 158 (403)
+|..+|++..... |+......+..+|.+.+++.+ |+++++..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 7777777766543 455555666666666555443 23333322
Q ss_pred --------hhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 159 --------PKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN-EMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 159 --------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
.+..|.--+..-...-...+...|++++|..++. ...+.-...+...-+--+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 2211100000000111122234456666666663 2323222223333344566677778888888888888
Q ss_pred HHcC
Q 015673 230 EKKG 233 (403)
Q Consensus 230 ~~~~ 233 (403)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7775
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=2.5e-06 Score=67.58 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCC
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGD 252 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 252 (403)
..+....+.|++..|...|.+.... -++|..+|+.+.-+|.+.|+.+.|..-|.+..+....-+...-|..+..+..|+
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 3444444444444444444444433 233444444444444444444444444444444322222222222222224444
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY 295 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (403)
.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 184 ~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 184 LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444332 113333333444444444444444443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=3.3e-06 Score=66.88 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
......+...|+-+....+..... ...+.+......++....+.|++..|...|.+.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 455666777777777777766655 34455555666677888888888888888888877554 4788888888888888
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
|++++|..-|.+..+- .+-+....+.+.-.+.-.|+++.|..++......+. -|...-..+.......|+++.|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888887653 233455667777777788888888888888776633 3666777777778888888888777
Q ss_pred HHHH
Q 015673 226 WSEM 229 (403)
Q Consensus 226 ~~~~ 229 (403)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.9e-06 Score=65.98 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673 213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM 287 (403)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (403)
+.+..+.+-|.+.+++|.+. .+..+.+.+..++ ..+....|.-+|++|.++ ..|+..+.+-.+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444444555555554442 1333333333222 223344555555555442 24455555555555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673 288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (403)
+++|..++++...+. ..++.+...++.+-...|.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 555555555555443 2234444444444444443
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.3e-08 Score=54.43 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
.||..+|+++|.+|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=1.2e-06 Score=82.21 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=116.5
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
+..++..+.....+.|++++|..+++.+.. -.|.+......++..+.+.+++++|+..+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 466677888889999999999999999884 55666667788999999999999999999999987654 6677788888
Q ss_pred HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 015673 141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV 209 (403)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (403)
++.+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++..+. ..+....|+..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 89999999999999999986 33345778888999999999999999999998775 33344444443
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=3.5e-06 Score=76.12 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=87.4
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
.....|.+|+.+++.+..+ ..-..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+|+.|
T Consensus 743 i~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 3344555555555555322 112223455555555556666555555432 1233344555566666665
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
.++-.+.. |.......|-.-..-+ .+|.+.+|++++-.+. .|+. .|..|-+.|..+..+++.++-...
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 55544432 2222333333333333 5555555555554332 2232 345555555555555554432211
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
.-..|...+..-+-..|+...|...|-+.- -|..-+..|-.++.|++|.++-
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 112234444555555666666655553321 2333445555556666555543
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=2e-08 Score=53.66 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=6.4e-06 Score=77.33 Aligned_cols=147 Identities=13% Similarity=0.012 Sum_probs=122.6
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673 92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY 171 (403)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (403)
..+.+...+..|.....+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+..+++... .-+-+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 34455778888999999999999999999999996643 577788889999999999999999999986 445566778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 015673 172 GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNV 243 (403)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (403)
..+..++.+.|++++|..+|+++... .+-+..++..+..++-..|+.++|...|+...+.. .+....|+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 88889999999999999999999984 33468899999999999999999999999998763 333344443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.6e-05 Score=60.67 Aligned_cols=253 Identities=16% Similarity=0.148 Sum_probs=167.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
++-+.-.|++..++..-....... .+...-..+.++|...|.+..... .+.. +-.|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~--~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE--GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc--ccCChHHHHHHHHHHhhCcch
Confidence 344555788888877666554432 344444555566777776654432 2222 223444444444444444455
Q ss_pred hHHHH-HHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673 184 SDKAL-ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID 261 (403)
Q Consensus 184 ~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~ 261 (403)
.++-. ++.+.+.......+......-...|+..|++++|++....... .+....+ +..+ +..+.+.|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44443 3444454443443434444556678899999999998876221 1222222 2222 6788999999999
Q ss_pred HHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 262 EMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.|.+.. +..|.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+....++...|++++|..+++..+.+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 998753 66778878888764 45788999999999975 37899999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCc
Q 015673 338 KIPDFNTVKLLVEGLVKKKKIKE-AKGVIRTIKKKFPP 374 (403)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 374 (403)
..++.++..++.+-...|...+ ..+.+.+.+...|.
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 5678888777777777776544 45667777664443
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=5.6e-07 Score=71.23 Aligned_cols=161 Identities=11% Similarity=0.045 Sum_probs=120.6
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
+..|...|+++.+....+.... |. . .+...++.+++...++.... ..+.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~---------~~~~~~~~~~~i~~l~~~L~-~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H---------QFASQQTPEAQLQALQDKIR-ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c---------cccCchhHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCC
Confidence 5677888998887554432211 21 0 12235666777777777763 56777888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCC--cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRL--YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (403)
++++|...|++..+..+. +...+..+..+ +...|+ .++|.+++++..+ ..+-+...+..+...+.+.|++++|.
T Consensus 88 ~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987754 77888888876 467777 4899999999986 34457788899999999999999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHH
Q 015673 189 ELLNEMENKGVEVTTVTYTTVLNC 212 (403)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~ 212 (403)
..|+++.+. .+|+..-+ .+|..
T Consensus 165 ~~~~~aL~l-~~~~~~r~-~~i~~ 186 (198)
T PRK10370 165 ELWQKVLDL-NSPRVNRT-QLVES 186 (198)
T ss_pred HHHHHHHhh-CCCCccHH-HHHHH
Confidence 999999887 44555444 34453
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.3e-05 Score=70.25 Aligned_cols=293 Identities=16% Similarity=0.186 Sum_probs=198.1
Q ss_pred HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673 47 IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YLCNLIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 47 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
+.+...+..++-..++......+.++...+-..+.+++++++.-.+..-+.. -+..|+-.-+-.-+.....+..+++..
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc
Confidence 3444444443333344555666777778888888888888876443332222 122233333334456667777777655
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhh
Q 015673 126 LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT 205 (403)
Q Consensus 126 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 205 (403)
.+. |+ +...+..++-+++|..+|++.- .+....+.++. ..+..+.|.++-++.. .+..
T Consensus 1049 yDa-~~------ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1049 YDA-PD------IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred CCc-hh------HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHH
Confidence 432 22 3345556677788888887762 25555555554 3466777776666542 4578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 015673 206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (403)
|+.+..+-.+.|...+|++-|-+ ..|+..|.-++... +.|.+++..+.+....+..-.|.. =+.|+-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 99999999999999999877754 24677888888888 999999999999988877555544 4578899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015673 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV 364 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (403)
.++..+-..++. -||......+.+-|...|.++.|.-+|.. ..-|..|...+...|+++.|...
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 999887665542 57888888888999999999888877754 33567788888888888888776
Q ss_pred HHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 365 IRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
-++. +....|..+-.+|--.+
T Consensus 1243 aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred hhhc------cchhHHHHHHHHHhchh
Confidence 6554 34567887777665443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=1.6e-06 Score=64.55 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=88.9
Q ss_pred HHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 259 LIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.++.+... .| +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++..+..+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555554 33 34456667778888999999999999988765 5577788888889999999999999999888765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+.+...+..+..++...|++++|...|++..+..+.+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 6677888888889999999999999999988754433
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=2.1e-05 Score=62.01 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHhhhccCCC---CcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHH
Q 015673 39 FDPDKALDIYSSVSKHYASP---VSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDH 115 (403)
Q Consensus 39 ~~~~~A~~~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (403)
.++++.++++..++...... +.--..|..++-+....|+.+.|...++.+.... +.+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 34555555555554322110 1111223334444445555555555555554322 2222222222222333455555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEME 195 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (403)
|+++|+.+.+.++. |..++..-+...-..|.--+|++-++...+ .+..|...|.-+...|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 55555555554422 444444444444444444455555555544 334455555555555555555555555555554
Q ss_pred h
Q 015673 196 N 196 (403)
Q Consensus 196 ~ 196 (403)
-
T Consensus 182 l 182 (289)
T KOG3060|consen 182 L 182 (289)
T ss_pred H
Confidence 4
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.1e-05 Score=72.10 Aligned_cols=311 Identities=12% Similarity=0.083 Sum_probs=173.3
Q ss_pred cchhHHHHH--hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--------C
Q 015673 24 SSISVSKAK--SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDP--------K 93 (403)
Q Consensus 24 ~~~~~~~l~--~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~ 93 (403)
++.+...++ +.|...|+.|.|.+..+.+. +...|..+.+.+.+.++++-|.-.+-.|.... .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 334444443 45667889998887766653 33467788888888888888777666654311 0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH
Q 015673 94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173 (403)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 173 (403)
..+...-....-.....|..++|+.+|.+-+.. ..|=..|...|.+++|.++-+.=- .+. =..||..
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D---RiH-Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD---RIH-LRNTYYN 863 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc---cee-hhhhHHH
Confidence 011111122334455778888998888887652 233345666788888887765431 121 2345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHH----------hCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673 174 LLKSHCDSGSSDKALELLNEME----------NKG---------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (403)
-...+...++.+.|+++|++.. ... ...|...|.-...-+-..|+.+.|+.+|......
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~-- 941 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY-- 941 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh--
Confidence 5666666677777777776531 110 1224455666666666778888888888776542
Q ss_pred CCchHHHHHHHhh-hcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----------CCC
Q 015673 235 DLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE----------NGC 303 (403)
Q Consensus 235 ~~~~~~~~~ll~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~ 303 (403)
| .++.. |.+|+.++|.++-++-. |......|.+.|-..|++.+|...|.+... +++
T Consensus 942 ------f-s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 942 ------F-SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ------h-hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 1 11111 14455555554443221 333333444445444554444444433211 110
Q ss_pred C------------CCH-----------HHHHHHHHHHHccCChHHHHHHHHH--------HHhC--CCCCCHHHHHHHHH
Q 015673 304 S------------PNA-----------TTFRTWIYHLCGSGNFDKAYKVFKE--------SVMV--HKIPDFNTVKLLVE 350 (403)
Q Consensus 304 ~------------~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~ 350 (403)
+ .|. .-+..-+..|-+.|.+.+|+++.-+ ++.. .-..|+...+.-.+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0 000 0112233456677777777665322 2222 22357788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 015673 351 GLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~ 370 (403)
-++...++++|..++-..++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 88888889998888766543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.1e-05 Score=66.25 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=59.9
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDK 186 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 186 (403)
...|++++|+..++.+...-+ -|...+......+.+.++.++|.+.++++.. ..|+ ....-.+..++.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 345555555555555554322 1344444444555555555555555555543 2233 3344445555555555555
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
|.++++..... .+.|+..|..|.++|...|+..++..-..+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555544 334555555555555555555555444433
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.6e-05 Score=67.40 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=73.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChH
Q 015673 213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMD 289 (403)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 289 (403)
+...|++++|+..++.+... .|+...|..+.... ..++..+|.+.++.+... .|+ ....-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 33455555555555555544 34444444444433 555555555555555554 333 333344455555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+|..+++...... +-|+..|..|.++|...|+..++.... ...|...|+++.|...+...+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555443 445555555555555555554444322 223445566666666666666
Q ss_pred HhCCchh
Q 015673 370 KKFPPNV 376 (403)
Q Consensus 370 ~~~~~~~ 376 (403)
+....+.
T Consensus 453 ~~~~~~~ 459 (484)
T COG4783 453 QQVKLGF 459 (484)
T ss_pred HhccCCc
Confidence 6554443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=4e-06 Score=62.79 Aligned_cols=90 Identities=12% Similarity=-0.035 Sum_probs=39.4
Q ss_pred HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN 218 (403)
Q Consensus 139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 218 (403)
...+...|++++|...|+.... --+.+...|..+..++...|++++|...|+..... .+.+...+..+..++...|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444432 12223344444444444444444444444444443 12234444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 015673 219 AEEAERLWSEMEK 231 (403)
Q Consensus 219 ~~~a~~~~~~~~~ 231 (403)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=6.5e-05 Score=59.36 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=117.8
Q ss_pred CcCcHHHHHHHchhhC--C-CCCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 147 LYDKVPILFDEIPKKY--N-LSPDKIS-YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
+.++..+++..+.... | ..++..+ |..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 3444455544443221 2 2344432 445555666677777777777777665 433333322223334456778888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
.++++.+.+.+ +.|.+++..-+... ..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888887764 34555555555555 667766777777777665 3558888888999999999999999888888765
Q ss_pred CCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCC
Q 015673 302 GCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVH 337 (403)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 337 (403)
. +.++..+..+...+.-.| +..-+.++|.+.++..
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3 445555666666554444 4567788888877654
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=3.4e-05 Score=70.02 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChH
Q 015673 211 NCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD 289 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (403)
.+......|.+|+.+++.+..++ .-...|..+...| ..|+++.|+++|.+.- .++-.|..|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33445556666666666666542 2233445555555 6677777777665432 2344566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
.|.++-.+.... ......|-.-..-+-..|++.+|.+++-.+ | .|+. .|..|-+.|..+..+++.++-
T Consensus 809 da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 809 DAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777666554421 233445555555566677777777666332 2 3432 356777777777777776654
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.6e-05 Score=72.82 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=148.4
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCCcHHHHHHHHH
Q 015673 70 RRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL---------GTPRSVISFNALLF 140 (403)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~ll~ 140 (403)
..|...|+.+.|.+-.+.++ +..+|..+.+.|.+..+.+-|.-.+-.|... ...++ .+-....-
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 34567788888877776665 3567889999999998888887777666431 01121 22233333
Q ss_pred HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH
Q 015673 141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220 (403)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 220 (403)
.....|.+++|+.+|.+..+ |..|=..|...|.+++|+++-+.=-...+ ..||.....-+-..+|.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHH
Confidence 45667888999999988853 45555667778999999888765433222 356666666677788888
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300 (403)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 300 (403)
.|++.|++.... --..+..+. .++...+.+.+.+. |...|..-....-..|+++.|+.+|....+
T Consensus 876 ~AleyyEK~~~h----afev~rmL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 876 AALEYYEKAGVH----AFEVFRMLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHhcCCh----HHHHHHHHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 888888764221 111111111 12222222222222 334444445555566777777777765542
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 301 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
|-++++..|-.|+.++|-++.++ .-|...-..+.+.|...|++.+|..+|.+.+
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33455555666666666665544 1234444456666666666666666665554
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.00089 Score=62.48 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=151.6
Q ss_pred HHhcCCcchHHHHHHHhhcC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc
Q 015673 72 LAKSKRFSDIETLIESHKND-PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK 150 (403)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 150 (403)
....+++..|.....++.+. +..+...++.++ .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34567888888888887632 222222222222 346899999999999988877665 88999999999999999999
Q ss_pred HHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC----------HH
Q 015673 151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN----------AE 220 (403)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~ 220 (403)
|..+|+...+ .-|+......+..+|.+.+++.+-.+.--++.+. .+-+...+=++++.+.+.-. ..
T Consensus 96 ~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999974 4567777888888999998887655554444443 44455555566665544321 23
Q ss_pred HHHHHHHHHHHcCCCC-chHHHHHHHhhh-cCCChHHHHHHH-HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 015673 221 EAERLWSEMEKKGVDL-DVAAYNVRITNT-YGGDPERLKELI-DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297 (403)
Q Consensus 221 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~-~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (403)
-|.+.++.+.+.+... +..-...-+..+ ..|.+++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566666666654111 111112222223 778899999999 4454443333444455667788889999999999999
Q ss_pred HHHCC
Q 015673 298 LEENG 302 (403)
Q Consensus 298 ~~~~~ 302 (403)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 98886
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=7.3e-06 Score=60.95 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..+...+...|++++|.+.|+.+...+. .+...+..+...+...|++++|..+++...+ ..+.+...+..+..++..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 3344444444555555555555444332 1344444444444444555555555544433 122233444444444455
Q ss_pred cCChHHHHHHHHHHHh
Q 015673 181 SGSSDKALELLNEMEN 196 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~ 196 (403)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=2.2e-05 Score=68.37 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +-+..........|.+.++.+.|++
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 4466677777777776652 33 33446666666677777777777776542 3355556656666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+.+++.+.. |.+..+|..|..+|.+.|++++|...++.+.
T Consensus 256 iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777654 4556677777777777777777777777664
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=3.5e-05 Score=57.91 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=85.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 015673 241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDT----ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA--TTFRTWI 314 (403)
Q Consensus 241 ~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~ 314 (403)
|..++..+..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+......|+. .....+.
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444446677888888888887763 222 23334556778889999999999998886522221 2344567
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
..+...|++++|+..++..... ...+..+....++|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888899999999998764322 344556677888999999999999888764
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.7e-05 Score=69.05 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+ ..+.+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 456777777888999999999988854 33 445577777777888888888888876 344566667777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.++++.|+++.+++.+. .+.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999998886 444666899999999999999999988887654
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=1.9e-05 Score=59.41 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=48.7
Q ss_pred cCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH--HHHHHHHHHHhccCCH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE--PYLCNLIRSYGQAGMF 113 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 113 (403)
.++...+...++.+.+.. |.. ...+...+...+...|++++|...|+.+......+.. .....|..++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555544 211 1122223344444555555555555555432211110 1122244445555555
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156 (403)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 156 (403)
++|+..++...... .....+......+.+.|++++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554432211 122333344444555555555555444
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=6.2e-05 Score=54.44 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=79.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCS--PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPDFNTVKLLV 349 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 349 (403)
++..+...+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|...|+.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4566777888899999999999998865311 1134566788889999999999999999886531 12356677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (403)
.++.+.|++++|...++++.+..|.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 8899999999999999999887766644
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=2.9e-05 Score=53.40 Aligned_cols=95 Identities=19% Similarity=0.123 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK 354 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (403)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556777788889999999998887763 3344667777888888899999999998887765 4455677888888888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 015673 355 KKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~ 371 (403)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999888887653
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.24 E-value=0.00026 Score=58.03 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=34.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
.+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455566777777777777776654 22233444555666777777777776665544
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.8e-06 Score=46.10 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=20.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (403)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00024 Score=60.26 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=151.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhc
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDS 181 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 181 (403)
....+.+..++..|+..+....+..+. +...|..-+..+...|+++++.--.+.-.+ +.|. ...+.-.-+++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhh
Confidence 334455666677777777777776543 444555555555555666665544433321 1111 11122222222222
Q ss_pred CChHHHHHHH---------------HHHHhCC-CCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 182 GSSDKALELL---------------NEMENKG-VEVTTVTYTTV-LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 182 ~~~~~a~~~~---------------~~~~~~~-~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
++..+|.+.+ +...... -+|...++..+ ..++...|++++|.++-..+++... ...+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHH
Confidence 2222222222 2221111 12333444333 3456677888888888777776532 2223333
Q ss_pred Hhhh---cCCChHHHHHHHHHHHHCCCCCChhcHHH---H----------HHHHHhcCChHHHHHHHHHHHHC---CCCC
Q 015673 245 ITNT---YGGDPERLKELIDEMRDAGLKPDTISYNF---L----------MTCYCKNEMMDEAKKVYEGLEEN---GCSP 305 (403)
Q Consensus 245 l~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l----------~~~~~~~~~~~~A~~~~~~~~~~---~~~~ 305 (403)
+... ..++.+.+...|++.+.. .|+...-.. . ..-..+.|.+..|.+.|.+.+.. +..|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3332 778888888888887765 344322111 1 12245678888898888887753 3456
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhHHHHHHHH
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVLRAWKKVE 384 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 384 (403)
+...|.....+..+.|+..+|+.--+...+.+ +.-...|..-..++...++|++|.+-+++..+. ..+.....|....
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 66777777778888899999888888776543 122334444455666778888888888887653 2233333444444
Q ss_pred HHh
Q 015673 385 EEL 387 (403)
Q Consensus 385 ~~~ 387 (403)
.++
T Consensus 365 ~aL 367 (486)
T KOG0550|consen 365 LAL 367 (486)
T ss_pred HHH
Confidence 333
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.00018 Score=58.76 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCCHHHH
Q 015673 269 KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVHKIPDFNTV 345 (403)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 345 (403)
+-|...|..|..+|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++..+|++++..+ +-++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5588999999999999999999999999998764 567777777777665543 3568999999999877 6788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 346 KLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
..|...+...|++.+|...|+.|.+..||+.. |..+++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~--rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP--RRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc--hHHHHHH
Confidence 88999999999999999999999999998864 6666654
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.4e-06 Score=45.39 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=19.8
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (403)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.3e-06 Score=45.80 Aligned_cols=33 Identities=36% Similarity=0.743 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVT 202 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 202 (403)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455556666666666666666666655555554
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=5.1e-05 Score=54.87 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=65.0
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC--CCHHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI--TQEPYLCNLI 104 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 104 (403)
.+...+..+...|++++|.+.|+.+.............+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566677777788888888887777665111112344556777777777777777777776642211 1234456666
Q ss_pred HHHhccCCHHHHHHHHHHHHhCC
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777654
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.18 E-value=7e-05 Score=65.58 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc
Q 015673 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG--VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS 274 (403)
Q Consensus 198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (403)
+.+.+......+++.+....+.+.+..++.+..... ...-+.|..+++..| ..|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344455666666666666666667777666665541 112234445666666 66667777777766666677777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS 320 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (403)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777766666555555555555555554443
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.17 E-value=0.00017 Score=61.00 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHhc-CCcCcHHHHHHHchhhCCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----chh-hHHH
Q 015673 140 FACTRS-RLYDKVPILFDEIPKKYNLSPD----KISYGLLLKSHCDSGSSDKALELLNEMENKGVEV-----TTV-TYTT 208 (403)
Q Consensus 140 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ 208 (403)
..|... |++++|++.|++..+-+..... ...+..+...+.+.|++++|.++|++........ +.. .|..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 5666666666655432111111 2234455566666777777777776665432211 111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
.+-++...||+..|.+.+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333555566666666666666543
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3.5e-05 Score=62.51 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=45.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..+++++|+..|.+..+.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4455556666665555542 2244445555555556666665555555555442 1123355555555555566666655
Q ss_pred HHHHHHh
Q 015673 329 VFKESVM 335 (403)
Q Consensus 329 ~~~~~~~ 335 (403)
.|++.++
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5555553
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=5.1e-06 Score=44.68 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL 236 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (403)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544443
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=9.2e-05 Score=52.80 Aligned_cols=111 Identities=12% Similarity=0.018 Sum_probs=79.5
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC---CHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT---QEPYLCNLI 104 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 104 (403)
......++-..|+.++|+.+|++....+.........+-.+...+...|++++|..++++..... +. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHH
Confidence 34466777888999999999999999885444445566678888889999999999999887432 22 223333455
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 143 (403)
.++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 667788999999988877665 45556666666554
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0015 Score=55.68 Aligned_cols=298 Identities=11% Similarity=0.005 Sum_probs=161.5
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
.......+.+..++..|+..+..+++.. |.. ...|..-+..+...+++++|.--.+.-.+.. +.........-+++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC--PDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCH 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC--ccc-hhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhh
Confidence 4455677778888999999999999888 553 4455556666777788877766555443211 11112233455555
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-HHHHHhcCChHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL-LKSHCDSGSSDK 186 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 186 (403)
...++..+|.+.++.- ..+ ....++..++.+.....-+|...++..+ ..++.-.|++++
T Consensus 128 ~a~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 5556666665555511 111 0112222223332222222333444333 234445666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH--------------HhhhcCCC
Q 015673 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR--------------ITNTYGGD 252 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~~~~~~~ 252 (403)
|.+.--...+... .+....-.=..++.-.++.+.+...|++.+..+ |+....... -.+++.|.
T Consensus 188 a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 188 AQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 6666555544321 122211111223334556666666666665542 332211111 11236688
Q ss_pred hHHHHHHHHHHHHC---CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChHHH
Q 015673 253 PERLKELIDEMRDA---GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT---TFRTWIYHLCGSGNFDKA 326 (403)
Q Consensus 253 ~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 326 (403)
+..|.+.|.+.+.. +.+|+...|.....+..+.|+..+|+.-.++..+. |.. .|..-..++...+++++|
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887754 23444555666667777888888888888877754 332 222333455667888888
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 015673 327 YKVFKESVMVHKIP-DFNTVKLLVEGLVKKK 356 (403)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 356 (403)
.+-+++..+....+ ...++.....++-++.
T Consensus 341 V~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 341 VEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 88888877654222 2344444444444433
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=0.00014 Score=63.62 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=52.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|+++.|+..|+++.+.. +.+...|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5566666666666666553 2244555556666666666666666666666553 3345556666666666666666666
Q ss_pred HHHHHHhCC
Q 015673 329 VFKESVMVH 337 (403)
Q Consensus 329 ~~~~~~~~~ 337 (403)
.|++.+..+
T Consensus 92 ~~~~al~l~ 100 (356)
T PLN03088 92 ALEKGASLA 100 (356)
T ss_pred HHHHHHHhC
Confidence 666666543
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=6.8e-06 Score=55.18 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673 285 NEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (403)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765321 1334444567777777777777777766 3222 1233444455777777777777777
Q ss_pred HHHH
Q 015673 364 VIRT 367 (403)
Q Consensus 364 ~~~~ 367 (403)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.11 E-value=8.7e-05 Score=54.89 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
.+...+...|++++|..+|+-+.. -.+.+...|..|.-++-..|++++|+..|......++. |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~-~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI-YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 445555666777777777776653 34455555666777777777777777777777666543 6666666777777777
Q ss_pred CcCcHHHHHHHchhhCC
Q 015673 147 LYDKVPILFDEIPKKYN 163 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~ 163 (403)
+.+.|.+.|+..+..++
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 77777777776665443
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=0.00015 Score=53.70 Aligned_cols=94 Identities=6% Similarity=-0.028 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015673 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK 355 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (403)
-.+..-+...|++++|.++|+.+...+ +-+..-|-.|..++-..|++++|+..|......+ +.++..+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334455567777888888777777654 3455566667777777778888888877777766 56677777777777788
Q ss_pred CCHHHHHHHHHHHHHh
Q 015673 356 KKIKEAKGVIRTIKKK 371 (403)
Q Consensus 356 g~~~~a~~~~~~~~~~ 371 (403)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888887777777653
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=8.1e-06 Score=54.82 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHhhhccCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVS-SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA 116 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 116 (403)
.|+++.|+.+|+++.+.. |.. +...+..++.++.+.|++++|..+++... ..+.+......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~--~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK--LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 578899999999998888 432 33344557888999999999999988722 2222334444568888899999999
Q ss_pred HHHHHH
Q 015673 117 MRTFDQ 122 (403)
Q Consensus 117 ~~~~~~ 122 (403)
+++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988875
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.08 E-value=0.00026 Score=66.62 Aligned_cols=183 Identities=8% Similarity=-0.018 Sum_probs=129.4
Q ss_pred cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHH
Q 015673 78 FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDE 157 (403)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 157 (403)
...|...|-+..+ ..+.-.+.|..|...|....+...|.+.|+..-+.+.. +...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alr-ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR-LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5556665555543 34444566888888888888889999999999887654 777888889999999999999888444
Q ss_pred chhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 015673 158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237 (403)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (403)
..++.....-...|....-.|.+.++...|..-|+...+.. +.|...|..++.+|...|++..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 33221111112234445556778888999999999888763 347888999999999999999999999888775 344
Q ss_pred hHH--HHHHHhhhcCCChHHHHHHHHHHHH
Q 015673 238 VAA--YNVRITNTYGGDPERLKELIDEMRD 265 (403)
Q Consensus 238 ~~~--~~~ll~~~~~~~~~~a~~~~~~~~~ 265 (403)
... |...+..+..|.+.++...+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 322 2222222377888888888887653
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00012 Score=56.98 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=48.8
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+...|++++|+..|+++.+....+......+..+...+.+.|++++|...+++... ..+.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 34555666666667777777777766655422221234455666666666677776666666653 22333444555555
Q ss_pred HHhccCC
Q 015673 106 SYGQAGM 112 (403)
Q Consensus 106 ~~~~~~~ 112 (403)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 5555555
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=8.8e-05 Score=64.96 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=107.7
Q ss_pred HHHHchhhC--CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 154 LFDEIPKKY--NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 154 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
++..|.+.+ +.+.+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 444443332 34556777888899888888999999999998765 23233456679999999999999999999999
Q ss_pred HHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673 230 EKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN 285 (403)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (403)
...|+-||..++|.++..+ ..|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999998887777777777666666665
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00011 Score=64.19 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=80.1
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
+......+...|++++|++.|+++++.+ |. +...|..+..++...|++++|+..++.+.. ..+.+...|..+..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--PN-NAELYADRAQANIKLGNFTEAVADANKAIE-LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHH
Confidence 3445677788899999999999999988 54 556777888999999999999999999875 4455667788889999
Q ss_pred hccCCHHHHHHHHHHHHhCC
Q 015673 108 GQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~ 127 (403)
...|++++|+..|+...+.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999998865
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00055 Score=53.16 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.++.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455555666666777777777766664322221 2455666666666777777777777666543 3344555555566
Q ss_pred HHhcCC--------------HHHHHHHHHHHHHhCCch
Q 015673 352 LVKKKK--------------IKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 352 ~~~~g~--------------~~~a~~~~~~~~~~~~~~ 375 (403)
+...|+ +++|.+++++..+..|.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 665555 567777777777655544
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00012 Score=50.13 Aligned_cols=58 Identities=22% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
+..+...+...+++++|.+.++...... +.+..++..+..++...|+++.|...+...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444444444443331 112233344444444444444444444443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00026 Score=54.80 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
..+..++..+...|++++|...|+........+ ...++..+..++...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444445555555555555555554221111 112344455555555555555555555544
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.00021 Score=49.08 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=46.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGC-SPNATTFRTWIYHLCGSG--------NFDKAYKVFKESVMVHKIPDFNTVKLLV 349 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (403)
|..|...+++.....+|+.+...|+ .|+..+|+.++.+.++.. +.-+.+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444444666666666666666666 666666666666555432 2234556666676666677777777666
Q ss_pred HHHHh
Q 015673 350 EGLVK 354 (403)
Q Consensus 350 ~~~~~ 354 (403)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.93 E-value=0.00096 Score=53.33 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=39.8
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN 90 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (403)
.+......+...|++.+|++.|+.+........-...+...++.++.+.|+++.|...++....
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444556666777778888877777776633333444555667777777777777777777653
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00034 Score=58.90 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
+|..+++..-+.+..+.|.++|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ...+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554321 1122333333332122 33444455555554443 222333333333333
Q ss_pred -cCCChHHHHHHHHHHHHCCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673 249 -YGGDPERLKELIDEMRDAGLKPDT---ISYNFLMTCYCKNEMMDEAKKVYEGLEE 300 (403)
Q Consensus 249 -~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 300 (403)
..++.+.+..+|+..... +.++. ..|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555554433 11111 2444444444444555555555544444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=0.00026 Score=54.76 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=66.5
Q ss_pred cchHHHHHHHhh-cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCCcCcHHHH
Q 015673 78 FSDIETLIESHK-NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR--SVISFNALLFACTRSRLYDKVPIL 154 (403)
Q Consensus 78 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 154 (403)
+..+...+..+. ..+.......+..++..+...|++++|+..|+........+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333444444442 22233334456667777778888888888888887643222 234677777778888888888888
Q ss_pred HHHchhhCCCCCchHHHHHHHHHHH-------hcCChHHHHHHHH
Q 015673 155 FDEIPKKYNLSPDKISYGLLLKSHC-------DSGSSDKALELLN 192 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 192 (403)
+++.... .+....++..+...+. ..|+++.|...++
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 8777642 2223344555555554 5555554444443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.0037 Score=52.92 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=72.9
Q ss_pred hh-cC-CChHHHHHHHHHHHHC----CCCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHH
Q 015673 247 NT-YG-GDPERLKELIDEMRDA----GLKPD--TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-----NAT-TFRT 312 (403)
Q Consensus 247 ~~-~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~-~~~~ 312 (403)
.+ .. |+++.|.+.|++..+. + .+. ..++..+...+.+.|++++|..+|+++...-... +.. .+-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 44 45 7888888888876542 2 111 2355667778889999999999999887643221 111 2233
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVMVH--KIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+-++...|+...|.+.+++..... +..+ ......|+.++ +.|+.+.....+.+..+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 3446667788999999998887552 2223 33445555555 56777666666666654
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0094 Score=49.00 Aligned_cols=179 Identities=11% Similarity=0.085 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY---TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 247 (403)
+-.....+...|++++|.+.|+.+... .+-+...- -.++.++.+.+++++|...+++..+..+.....-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 334445556678888888888887765 22222222 34566777888888888888887776332222222222221
Q ss_pred h---cC---------------CCh---HHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673 248 T---YG---------------GDP---ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 248 ~---~~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (403)
. .. .|. ..|...|+.+++. -|+. .-..+|...+..+... .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~---la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR---LA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---HH
Confidence 1 00 111 2344455555444 3333 2234444444333321 00
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMV--HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
..--.+..-|.+.|.+..|+.-++.+++. +.+...+....++.+|...|..++|..+...+.
T Consensus 176 -~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 -KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11114456688888888888888888875 334456677788889999999999888776654
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=0.0001 Score=46.61 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
+...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3456777788888888888877765 45667777777788888888888888887776444
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=2.3e-05 Score=40.96 Aligned_cols=29 Identities=38% Similarity=0.785 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00034 Score=48.06 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=41.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCchHHHHH
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGN--------AEEAERLWSEMEKKGVDLDVAAYNV 243 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (403)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-..+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 6666666666666554421 2234444455555555555555555
Q ss_pred HHhhh
Q 015673 244 RITNT 248 (403)
Q Consensus 244 ll~~~ 248 (403)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 44443
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=3e-05 Score=40.54 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=0.00013 Score=46.70 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK-KIKEAKGVIRTIKK 370 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 370 (403)
+..+|..+...+...|++++|+..|++.++.+ +.++..|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777665 456667777777777777 57777777777665
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00033 Score=58.98 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=32.7
Q ss_pred HHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhcCCHHHHHHHHH
Q 015673 151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT---VTYTTVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~ 227 (403)
|..+|+...+. ++.+...|..-+..+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444442 2223333444444444444444444444444433 22111 244444444455555555555554
Q ss_pred HHHH
Q 015673 228 EMEK 231 (403)
Q Consensus 228 ~~~~ 231 (403)
++.+
T Consensus 132 R~~~ 135 (280)
T PF05843_consen 132 RAEE 135 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=9.6e-05 Score=47.21 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=40.3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
...|++++|+++|+++.... +.+......+..+|.+.|++++|.++++++....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45677788888888877665 556777777788888888888888888887764444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0054 Score=46.47 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHh
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RSVISFNALLFACTR 144 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 144 (403)
..+..++.+.|+..+|...|++........+......+.++....+++..|...++++.+..+. .+..+...+...+..
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 4566666677777777777776665444555555566666666667777777766666553311 122333444555666
Q ss_pred cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673 145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188 (403)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (403)
.|.+..|...|+....- -|+...-......+.+.|+.+++.
T Consensus 173 ~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 173 QGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred cCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 66666666666666532 233332222233334455444443
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.027 Score=52.07 Aligned_cols=314 Identities=15% Similarity=0.093 Sum_probs=175.2
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcc--hHHH-HHHHhhcCCCCCCHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFS--DIET-LIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~--~a~~-~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...++..+...+.+..|+++-.++..... .. ...|....+-+.+..+.. ++.+ +-+++. ... .+...|..+.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA 514 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPES--QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIA 514 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccc--cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHH
Confidence 34468888888999999999888854331 11 355666676666663322 2223 323332 222 3344577777
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----------CCCchHH
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTP----RSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----------LSPDKIS 170 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~ 170 (403)
+-....|+++-|..+++.=...+.. .+...+..-+.-+.+.|+.+....++-.+..+.. .+.....
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 7777899999998887653322211 1233345556667778888887777666644310 1111112
Q ss_pred HHHHHHH--------HHhcCChHHHHHHH--HHHHhC-CCCCchhhHHHHHHHHHhcCCHHH----------HHHHHHHH
Q 015673 171 YGLLLKS--------HCDSGSSDKALELL--NEMENK-GVEVTTVTYTTVLNCLYKQGNAEE----------AERLWSEM 229 (403)
Q Consensus 171 ~~~l~~~--------~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~ 229 (403)
|..+++. +...++-..+...| +..... -+.+-........+.+.+.....- -+++.+.+
T Consensus 595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2222210 01111111111111 110000 011111222334444544443211 11222222
Q ss_pred HH-cCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 015673 230 EK-KGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307 (403)
Q Consensus 230 ~~-~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (403)
.. .|......+.+-.+.-+ ..|+..+|.++-.+.. -||-..|..-+.+++..+++++-+++-+... .+
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP 744 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP 744 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence 21 22233334444444444 7788888888887775 5688888888889999999988666554433 24
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
.-|.-++.+|.+.|+.++|.+++.+.. +.. ..+.+|.+.|++.+|.++-
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 567778889999999999999886642 211 4677888999988887654
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.77 E-value=0.00085 Score=55.52 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA----TTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKL 347 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 347 (403)
.|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+.+.. -+..+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3554444446678889999888888876 3432 456677888888999999999998888643 1223556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673 348 LVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
+..++...|++++|.++++++.+.+|.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 77788889999999999999988777654
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.027 Score=51.69 Aligned_cols=127 Identities=15% Similarity=0.227 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 39 FDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-DPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 39 ~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
|++++|.++|-.+-+++ ..+....+.|++-...++++.-.. .........|+.+...+.....|++|.
T Consensus 748 g~feeaek~yld~drrD-----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD-----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred cchhHhhhhhhccchhh-----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665553333 334555566666666655554221 111122335666777777777777777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELL 191 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (403)
+.|..-.. . ...+.++.+..++++...+...+.+ +....-.+..++...|.-++|.+.+
T Consensus 817 ~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 817 KYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHH
Confidence 76655422 1 1234445555555555544444433 3333444445555555555554444
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0022 Score=58.78 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
..|..+.-.+...|++++|...++++...+ |+...|..+..++...|+.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444433444455555555555554432 3444455555555555555555555555444
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00043 Score=56.43 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=50.3
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
.+.+++.+|+..|...+. -.|.+...|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 345555555555555552 34444445555555555555555555555555553321 3445555555555555555555
Q ss_pred HHHHHchhhCCCCCchHHHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGL 173 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ 173 (403)
+.|++.+ .+.|+..+|-.
T Consensus 170 ~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHhhh---ccCCCcHHHHH
Confidence 5555554 34444444433
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.72 E-value=0.00087 Score=55.47 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=71.4
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcC--CCCCCHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPYLCN 102 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 102 (403)
.|......+.+.|++++|+..|+.+++.. |.. ...++..+...|...|++++|...|+.+... ..+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444466788999999999998888 432 2456677888888889999999888888742 22223445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
++.++...|+.++|..+|+.+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7777878888899988888887754
No 189
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.69 E-value=0.03 Score=48.75 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=83.2
Q ss_pred HHhhh-cCCChHHHHHHHHHHHHCC-CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcc
Q 015673 244 RITNT-YGGDPERLKELIDEMRDAG-LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF-RTWIYHLCGS 320 (403)
Q Consensus 244 ll~~~-~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 320 (403)
.+... +....+.|..+|.++.+.+ +.+++..+++++..++ .|+...|..+|+.-... -||...| ...+..+...
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 33444 5556667777777776666 4556666676666654 35666777777654443 2333332 3455556666
Q ss_pred CChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCC
Q 015673 321 GNFDKAYKVFKESVMVHKIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAP 393 (403)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 393 (403)
++-+.|..+|+..+..- ..+ ..+|..++.--..-|+...+..+=++|...+|.... ..-....|++..+.
T Consensus 480 nde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~--~evF~Sry~ik~da 551 (660)
T COG5107 480 NDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL--IEVFTSRYAIKADA 551 (660)
T ss_pred CcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH--HHHHHHHHhhhccc
Confidence 77777777777554421 112 456777777777777777777777777666554432 22233444554443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0013 Score=60.14 Aligned_cols=59 Identities=12% Similarity=-0.057 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
.+..+...+...|++++|...++++.+.. |+...|..+...+...|+.++|...+.+..
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333334455555555555554433 344445555555555555555555554443
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.66 E-value=0.018 Score=46.42 Aligned_cols=189 Identities=11% Similarity=0.024 Sum_probs=97.5
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+-.-+....+.|++++|.+.|+.+..+.+..+-...+...++.++-+.+++++|+...++....-...+...|...+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444555566778888888888888776632222445555666777777888888887777654333222233444444
Q ss_pred HHhcc-------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673 106 SYGQA-------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178 (403)
Q Consensus 106 ~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (403)
+++.- .|...+...|..+.. ++.-|=.+.=...|..-...+... =...=..+.+.|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY 177 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA-----LAGHEMAIARYY 177 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44411 122222222222211 111111111111122111111100 000112455677
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTV---TYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
.+.|.+-.|..-++.|.+. .+-+.. .+-.+..+|...|-.++|.+.-.-+...
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 7888888888888888776 333333 3445566777777777777766655554
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.014 Score=46.90 Aligned_cols=131 Identities=10% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-----
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL----- 174 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----- 174 (403)
.+.++.++.-.+.+.-....+..+++...+.++.....|++.-.+.|+.+.|...|+...+. .-..|..+.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 34555666666666666666666666655556666666666666667766666666655433 222222222222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444556666666666655542 224444444444444556666666666666654
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.00026 Score=45.17 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=41.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
.+.|++++|.++|+.+.+. .+-+...+..+..+|.+.|++++|..+++.+... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777788888777765 3336666677777778888888888877777765 3444444433
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.00099 Score=51.91 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=51.9
Q ss_pred ChhcHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CChHHHHHH
Q 015673 271 DTISYNFLMTCYCK-----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS----------------GNFDKAYKV 329 (403)
Q Consensus 271 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 329 (403)
+-.+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444442 234444444455555555555555555555444321 234567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
+++|...|+.||.+++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888877664
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0035 Score=44.78 Aligned_cols=90 Identities=18% Similarity=0.098 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP---DFNTVKLLVEGL 352 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 352 (403)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455566666666666666666654433 2234445556666666666666666665432 11 122222234455
Q ss_pred HhcCCHHHHHHHHHHH
Q 015673 353 VKKKKIKEAKGVIRTI 368 (403)
Q Consensus 353 ~~~g~~~~a~~~~~~~ 368 (403)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6666666666665444
No 196
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0052 Score=48.67 Aligned_cols=208 Identities=14% Similarity=0.083 Sum_probs=103.2
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..|.....++....++++|...+.++.+.. ..+...| ... ..++.|.-+.+++.. .+.-...|+....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y---Ennrslf-hAA------KayEqaamLake~~k--lsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLF-HAA------KAYEQAAMLAKELSK--LSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHH-HHH------HHHHHHHHHHHHHHH--hHHHHHHHHHHHH
Confidence 456677777777888888888777776432 1111111 111 122334444444431 1122234455566
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----CCCchHHHHHHHHHHHhc
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----LSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 181 (403)
.|..+|.++.|-..+++.-+ ..++-+.++|+++|++...-.. ...-...+....+.+.+.
T Consensus 100 lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 67777777776666665432 1122233344444443321100 001112234444556666
Q ss_pred CChHHHHHHHHHHHhC-----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCchHHHHHHHhhhcCCCh
Q 015673 182 GSSDKALELLNEMENK-----GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG---VDLDVAAYNVRITNTYGGDP 253 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~ 253 (403)
..+++|-..|.+-... ....--..|...|-.+.-..|+..|...++.-.+.+ -.-+..+...++.+|..||.
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~ 243 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDI 243 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCH
Confidence 6666665555443211 011111234455556666677778887777744332 22345566667777777777
Q ss_pred HHHHHHHH
Q 015673 254 ERLKELID 261 (403)
Q Consensus 254 ~~a~~~~~ 261 (403)
+++.+++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 66665543
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.041 Score=47.09 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=78.2
Q ss_pred HHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673 240 AYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318 (403)
Q Consensus 240 ~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (403)
+.+..+..+ ..|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 334444444 7888888888877664 57888899999999999999887765432 224477888899999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015673 319 GSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV 364 (403)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (403)
+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 999999999888762 22 3356788899999888655
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.56 E-value=0.014 Score=46.59 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
..+...+..+...|++++|...|+.+...- .+........++.++.+.|+++.|...+++..+.-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334455666677778888888887776421 11222334457777777788888888777776643
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.53 E-value=0.011 Score=44.35 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=42.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362 (403)
Q Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (403)
...|++++|..+|+-+...+ .-|..-+..|..++-..+++++|+..|......+ ..|+..+.....+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554433 2233344444445555555555555555444333 233333444455555555555555
Q ss_pred HHHHHHHH
Q 015673 363 GVIRTIKK 370 (403)
Q Consensus 363 ~~~~~~~~ 370 (403)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.048 Score=46.72 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHH
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYC 283 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (403)
+.+.-+.-+...|+...|.++-.+. . -|+...|...+.++ ..+++++...+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4445566677788888777775554 2 46777888888888 88888877765432 224577888888998
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (403)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888887762 1 13456678888888888776544
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0032 Score=49.21 Aligned_cols=104 Identities=19% Similarity=0.322 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH
Q 015673 166 PDKISYGLLLKSHCD-----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (403)
.|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 466667777766653 35666677777777777887788888877776654 2221 1111111100
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673 241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM 287 (403)
Q Consensus 241 ~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (403)
....+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0334556778888888888888888888888888765543
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00061 Score=42.97 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
+...+.+.|++++|...|+.+++.. +-+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556777888888888888888764 3356677777778888888888888888877543
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00086 Score=42.87 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG-NAEEAERLWSEMEKK 232 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 232 (403)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45567777777777777777777777777763 346667777777777777 577777777776654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.043 Score=44.25 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh--
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-- 247 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-- 247 (403)
.-+.++.++...|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+...+..-..+..+++.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 346677777777888888888888888766667788888888888888888888888877665444444444443321
Q ss_pred ---h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673 248 ---T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR 311 (403)
Q Consensus 248 ---~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (403)
+ -.+++..|...+.+....+ ..|....|.-.-+..-.|+...|.+.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 1 4566666666666666553 224444444444444566777777777777665 34444433
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0051 Score=50.56 Aligned_cols=116 Identities=12% Similarity=0.021 Sum_probs=88.8
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---CcCcHHHHHHHchhhCCCCCch
Q 015673 92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR---LYDKVPILFDEIPKKYNLSPDK 168 (403)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~ 168 (403)
..|.+..-|..|...|...|+++.|...|.+..+... ++...+..+..++.... ...++..+|+++.+ .-+-|.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~i 227 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANI 227 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccH
Confidence 4667778899999999999999999999999887654 36777777777755432 34568899999986 445567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC 212 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 212 (403)
.+...+...+...|++.+|...|+.|.+. .+|+ ..+..++..
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~-~~rr~~ie~ 269 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD-DPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC-CchHHHHHH
Confidence 77888888999999999999999999987 3333 445555543
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.045 Score=41.69 Aligned_cols=158 Identities=12% Similarity=0.017 Sum_probs=101.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
+.....+.=+++...+-..+-.+ ..|+...-..|..++.+.|++.+|...|.+...- -+.-|....-.+.++....+
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhc
Confidence 44444445555554443333222 3378888888888899999999999999888652 34456777777888888889
Q ss_pred ChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH-HHHHHhhhcCCChHHH----
Q 015673 183 SSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA-YNVRITNTYGGDPERL---- 256 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~a---- 256 (403)
++..|...++++-+.+. ..++.+...+.+.+...|.+.+|..-|+.....-..|.... |..++. .+|+..++
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La--~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLA--KQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH--HhcchhHHHHHH
Confidence 99999999888876531 11334455677888888999999999988887633333332 222222 44544443
Q ss_pred HHHHHHHHH
Q 015673 257 KELIDEMRD 265 (403)
Q Consensus 257 ~~~~~~~~~ 265 (403)
.++++.+.+
T Consensus 217 ~~v~d~~~r 225 (251)
T COG4700 217 VAVVDTAKR 225 (251)
T ss_pred HHHHHHHHh
Confidence 445555544
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.30 E-value=0.0016 Score=42.20 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=36.2
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
..|.+.+++++|.++++.++..+ +.++..+.....++.+.|++++|.+.|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34566666666666666666654 4455666666666666666666666666666533
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.27 E-value=0.11 Score=45.42 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHCCCCCC----HHHHHHHHH--HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015673 288 MDEAKKVYEGLEENGCSPN----ATTFRTWIY--HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (403)
+..-+.+-+-+.+.|++|- ...-|.+.+ -+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 3444444444556676653 334444443 35678999998877666653 568999999999999999999999
Q ss_pred HHHHHHHH
Q 015673 362 KGVIRTIK 369 (403)
Q Consensus 362 ~~~~~~~~ 369 (403)
..++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99997763
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.032 Score=41.86 Aligned_cols=94 Identities=9% Similarity=-0.171 Sum_probs=70.1
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673 240 AYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 240 ~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (403)
.|......+..|++++|..+|.-+.-.+ .-+..-+..|..+|-..+++++|...|......+ .-|+..+-....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 3444444448899999999999887764 2356667778888888899999999988766544 2344445567788899
Q ss_pred cCChHHHHHHHHHHHh
Q 015673 320 SGNFDKAYKVFKESVM 335 (403)
Q Consensus 320 ~~~~~~a~~~~~~~~~ 335 (403)
.|+.+.|+..|+..++
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999988876
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.012 Score=47.78 Aligned_cols=100 Identities=18% Similarity=0.088 Sum_probs=76.4
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLI 104 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 104 (403)
.|+. .-.+...|++..|...|...++......-...++..|..++...|++++|..+|..+.+.- .+.-++.+..|.
T Consensus 144 ~Y~~-A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNA-ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544 4445566789999999999999884433456667789999999999999999999886532 222235677788
Q ss_pred HHHhccCCHHHHHHHHHHHHhCC
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.+..+.|+.++|..+|+++.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999988754
No 211
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.22 E-value=0.0083 Score=43.35 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
..++..++.++++.|+++....+++..-.-+ ++... ..+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4556667777777777776666665543211 11000 0000 01112344777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC-chhHHHHHHHHHHhCCCCCC
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFP-PNVLRAWKKVEEELGLVPAP 393 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 393 (403)
|+..|++..|.++++.+.+.++ |-....|..|++-.-+....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 7777777777777777776533 22244677777665554443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.011 Score=44.39 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-----KGVDLDVAAY 241 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 241 (403)
....++..+...|+++.|..+.+.+... -|.+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4566777788899999999999998887 455788899999999999999999999887743 4666666543
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.12 Score=44.94 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=10.1
Q ss_pred cCCChHHHHHHHHHHHHC
Q 015673 249 YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~ 266 (403)
..|+.++|.+..+.|.+.
T Consensus 317 L~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 317 LAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HcCCHHHHHHHHHHHhhc
Confidence 555555555555555544
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.19 E-value=0.12 Score=44.30 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=26.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK-KKIKEAKGVIRTIK 369 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 369 (403)
....+.++-...|++..|..--+.... ..|....|..|.+.-... |+-.++...+-+..
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 333444444455555554444443332 234444554444443332 55555555554443
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.0046 Score=39.98 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
..|.+.++++.|.++++.+... .+.+...+.....++.+.|++++|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567778888888888888776 33466777777888888888888888888887763
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.0054 Score=46.14 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=42.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTV 345 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 345 (403)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+..+|.+.|+++.. .|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666667777777777777777654 55666777777777777777777777766543 2666666553
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.16 E-value=0.0058 Score=44.15 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK 176 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (403)
..++..++.++++.|+.+....+++..=..++.... ..+. ........|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~-----------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK-----------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc-----------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 455667777777777777777766654321111000 0000 1222245566666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHh
Q 015673 177 SHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~ 215 (403)
+|+..|++..|+++++...+. +++.+..+|..|++-+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666655432 444455566665554433
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.15 E-value=0.14 Score=44.39 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
.+.-.+..++.++.-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 344444556666677777777777777776543
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.15 E-value=0.011 Score=50.54 Aligned_cols=131 Identities=14% Similarity=-0.015 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHH----CCC-CCCh
Q 015673 204 VTYTTVLNCLYKQGNAEEAERLWSEME----KKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRD----AGL-KPDT 272 (403)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~----~~~-~~~~ 272 (403)
..|..|.+.|.-.|+++.|+...+.-+ +.|-... ...+..+-.++ ..|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345666666667778887776654432 2221111 11222222233 56777777777765432 221 1123
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEE----NG-CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
....+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455677777777778888877765321 11 12234566678888888888888877765543
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.017 Score=49.54 Aligned_cols=122 Identities=12% Similarity=0.023 Sum_probs=84.5
Q ss_pred cCCChHHHHHHHHHHH----HCCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHH
Q 015673 249 YGGDPERLKELIDEMR----DAGLK-PDTISYNFLMTCYCKNEMMDEAKKVYEGLE----ENGC-SPNATTFRTWIYHLC 318 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~ 318 (403)
..|+++.|+...+.-. +.|-+ .....+..|..++.-.|+++.|.+.|+.-. +.|- .......-+|...|.
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 7799999987765432 22211 123567778889999999999999988643 3331 122344557788888
Q ss_pred ccCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 319 GSGNFDKAYKVFKESVMV-----HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
-..++++|+.++.+=+.. +..-....+.+|..+|...|..++|..+.+.-.+
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888999999887653221 1123456777899999999999999988877654
No 221
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.091 Score=39.56 Aligned_cols=128 Identities=19% Similarity=0.163 Sum_probs=81.0
Q ss_pred hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HH--HHHHHHHhc
Q 015673 33 SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YL--CNLIRSYGQ 109 (403)
Q Consensus 33 ~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~ 109 (403)
-.+.+.+..++|+.-|..+.+.|....+. .+...........|+...|...|.++......|... -. ..-...+..
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPV-LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchH-HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 34566778888888888888777433222 222344555667788888888888876544433322 11 112334556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673 110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 161 (403)
.|.++......+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777777777777665554445555666777777788888888888877654
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.03 Score=45.59 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=77.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGC--SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPDFNTVKLLV 349 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 349 (403)
.|+.-+..+ +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.-. +--++.+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 477655554 56779999999999887631 11123455678899999999999999988877521 23457888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (403)
.+..+.|+.++|...|+++.+++|....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999998886654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.89 E-value=0.013 Score=51.40 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=56.6
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcch--hhHHHHHHHHHhcCCcchHHHHHHHhhc
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR--YAQDLTVRRLAKSKRFSDIETLIESHKN 90 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (403)
.|.....+..+..+|...|++++|+..|++.++.+ |.... .+|..+..+|...|++++|+..+++...
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445678889999999999999999999999988 64332 4578899999999999999999999885
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.0047 Score=40.54 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENK----GV-EVT-TVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.+++.+...|...|++++|+..|++..+. |. .|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777778888877777776532 11 112 45667777777788888888877777654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.0038 Score=41.00 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVMV----HK-IPD-FNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+++.+...|...|++++|+..|++.++. |- .|+ ..++..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555433 10 011 3445556666666666666666666654
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.084 Score=48.23 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=95.9
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHH-----HHHHHHHhcCChHHHHHHHHH
Q 015673 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYG-----LLLKSHCDSGSSDKALELLNE 193 (403)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~ 193 (403)
++++.+.|-.|+... +...++-.|.+.+|-++|.+- |.... ...|+ -..+-+...|..++-..+.++
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 445566666666543 334456677777887777665 22111 01111 112333444444443333322
Q ss_pred HHhC--CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCC---CchHHHHHHHhhh-cCCChHHHHHHH
Q 015673 194 MENK--GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSE------MEKKGVD---LDVAAYNVRITNT-YGGDPERLKELI 260 (403)
Q Consensus 194 ~~~~--~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~ll~~~-~~~~~~~a~~~~ 260 (403)
-.+- ++ +| .+....+...|+.++|..+..+ +.+.+.+ .+..+...+...+ +...+..|-++|
T Consensus 696 RA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 696 RADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred HHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 1110 11 11 1334455567777777655321 1121111 1233333333344 667777888888
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHccCChHHHHHH
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT-----------FRTWIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~ 329 (403)
.+|-. ...+++.....++|++|..+-+...+. .||... |..--.+|.+.|+-.+|..+
T Consensus 771 ~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 771 LKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred HHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 87753 234667777888999998888776654 333221 12222345555555555555
Q ss_pred HHHHH
Q 015673 330 FKESV 334 (403)
Q Consensus 330 ~~~~~ 334 (403)
++++.
T Consensus 840 LeQLt 844 (1081)
T KOG1538|consen 840 LEQLT 844 (1081)
T ss_pred HHHhh
Confidence 55554
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.036 Score=50.96 Aligned_cols=239 Identities=13% Similarity=0.092 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCcHHHHHHH-------HHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673 94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTPRSVISFNAL-------LFACTRSRLYDKVPILFDEIPKKYNLS 165 (403)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (403)
.|.+..|..+.......-.++.|...|-+.... |++. +.-...+ ...-.--|++++|.++|-.+-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence 455677877777777777777777777665431 2210 0001111 01112247788888888777443
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
...+..+.+.|++-...++++.--.. .-..-...|+.+...++....|+.|.+.+..-... ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 34456677778887777666532110 00112356778888888888888888887664321 112
Q ss_pred Hhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673 245 ITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF 323 (403)
Q Consensus 245 l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (403)
+.++ ...++++.+.+...+ +-+....-.+..++.+.|.-++|.+.+-+.- .|. .-+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHH
Confidence 2233 444444444444433 3356677778888888888888887764322 222 334567777778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 324 DKAYKVFKESVMVHKIPDFNTV--------------KLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+|.++.+... -|...++ ..-|..+.+.|+.-+|-+++.+|.+
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77777765532 1222221 1124455566666666666666643
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.83 E-value=0.0035 Score=35.72 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE 384 (403)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 384 (403)
.++..+...|...|++++|+++++++.+..| ++...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhh
Confidence 4567788888999999999999999888544 4456777654
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.16 Score=43.81 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=97.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChH
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD 289 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (403)
.+.|.+.|++..|..-|++.... +.....-+.++.. ....+ -..+++.|.-+|.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~~~~~~~ee~~-~~~~~-------k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LEYRRSFDEEEQK-KAEAL-------KLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hhccccCCHHHHH-HHHHH-------HHHHhhHHHHHHHhhhhHH
Confidence 45688999999999998887653 0000111111111 11111 2345677888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 015673 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIK-EAKGVIRTI 368 (403)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 368 (403)
.|+......+..+ ++|....-.-.+++...|+++.|+..|+++++.. |.|..+-..++.+-.+..+.. ...++|..|
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 6777777778899999999999999999999765 445555555555555544443 447788888
Q ss_pred HHh
Q 015673 369 KKK 371 (403)
Q Consensus 369 ~~~ 371 (403)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.78 E-value=0.043 Score=40.16 Aligned_cols=84 Identities=7% Similarity=-0.004 Sum_probs=52.4
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
+..+..-.....+.|++++|++.|+.+..+-..+.-...+...++.++.+.+++++|...+++..+.........|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34455556666677888888888888877773333355555667778888888888888877776433322223344444
Q ss_pred HHHh
Q 015673 105 RSYG 108 (403)
Q Consensus 105 ~~~~ 108 (403)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 4443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.77 E-value=0.17 Score=46.26 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCch-----HHHHHHHhhh--c---CCChHHHHHHHHHHHHCCCCCChhc
Q 015673 206 YTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDV-----AAYNVRITNT--Y---GGDPERLKELIDEMRDAGLKPDTIS 274 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~ll~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (403)
+..++....-.||-+.+++.+....+.+ +.... -.|..++..+ . ..+.+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3456666677899999999998876643 22111 2233333333 2 45778999999999987 677665
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 015673 275 YNFL-MTCYCKNEMMDEAKKVYEGLEENG--C-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV- 349 (403)
Q Consensus 275 ~~~l-~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 349 (403)
|... .+.+...|++++|++.|+...... . +.....+--+..++.-..++++|.+.|..+.+.. .-+..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5433 455678899999999999766321 0 1223345556677888999999999999999865 44555555443
Q ss_pred HHHHhcCCH-------HHHHHHHHHHHH
Q 015673 350 EGLVKKKKI-------KEAKGVIRTIKK 370 (403)
Q Consensus 350 ~~~~~~g~~-------~~a~~~~~~~~~ 370 (403)
.++...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345567877 888999888753
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.70 E-value=0.088 Score=38.56 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=73.5
Q ss_pred CchHHHHHHHhhhcCCChHHHHHHHHHHHHCCC--CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673 236 LDVAAYNVRITNTYGGDPERLKELIDEMRDAGL--KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 236 ~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
|....|+.....+..|+++.|.+.|+.+..+-. +-....-..|+.+|.+.+++++|...++++++.+..-...-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 445666777777788888888888888877621 112334556788888889999999988888876422222345555
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
+.+++.....+.. +..+. +..-|... ...|..-|+++.+++|.+.
T Consensus 89 ~~gL~~~~~~~~~---~~~~~--~~drD~~~-------------~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGS---LQSFF--RSDRDPTP-------------ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhH---Hhhhc--ccccCcHH-------------HHHHHHHHHHHHHHCcCCh
Confidence 5555543332222 22221 11222221 3477777777777776653
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.65 E-value=0.42 Score=42.02 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcH-HHHHH
Q 015673 203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISY-NFLMT 280 (403)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 280 (403)
..+|...++...+..-.+.|..+|.++.+.+ +.+++..+++++..+..|+...|..+|+.-... -||...| +..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4567777888788888899999999998888 667888888888888889999999999875554 3444433 55666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 281 CYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
.+...++-+.|..+|+..... +..+ ...|..+|.--..-|+...+..+=+.+...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777888999999999865532 1122 457888888888888888888777776653
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.64 E-value=0.28 Score=39.82 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=100.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh---h---
Q 015673 177 SHCDSGSSDKALELLNEMENKG--VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN---T--- 248 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~--- 248 (403)
.-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.++++.|+..+++....-......-|-..|.+ +
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 3457788888888888887652 1223344555667778888888888888887776433333333333322 2
Q ss_pred --cCCChHHH---HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673 249 --YGGDPERL---KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF 323 (403)
Q Consensus 249 --~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (403)
...|...+ ..-|++++.+ -||.. -...|..-+..+... =...=..+.+.|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 11333333 3333333333 33322 111222222221110 000112345668888888
Q ss_pred HHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 324 DKAYKVFKESVMVHKIP---DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..|..-++.|++. .+. ....+-.+..+|...|..++|...-.-+..+.|.+
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 8888888888876 232 33556667788888999888888777666544433
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.04 Score=49.52 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=45.2
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (403)
.+.|+.+.|.++.+.. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHH
Confidence 3455555554443222 2444555555555555555555555555521 34444444555555555
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
.++.+.....|. ++....++...|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444444322 23333444444555555544433
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.56 E-value=0.43 Score=41.12 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHHHchhhCCCCCchHH--HHHHHHHHHhcCChH
Q 015673 110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFDEIPKKYNLSPDKIS--YGLLLKSHCDSGSSD 185 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 185 (403)
.|+-..|.++-.+..+. +.-|......|+.+ -.-.|+++.|.+-|+.|... |.... ...|.-...+.|+.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence 45555555554443211 11233333333332 23346666666666666531 11111 122222233556666
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHH--HHHHHhhh----cCCChHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDVAA--YNVRITNT----YGGDPERLKE 258 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~ll~~~----~~~~~~~a~~ 258 (403)
.|..+-+..... -+.-...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+- ..-+...|..
T Consensus 172 aAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 666666655543 22234555666666666666666666665544332 2222211 11122111 2344555555
Q ss_pred HHHHHHHCCCCCChhc-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH---H
Q 015673 259 LIDEMRDAGLKPDTIS-YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES---V 334 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~ 334 (403)
.-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+. .|.+.++...+ ..+.|+. ++.-+++. .
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 55544443 444332 222345566667777777777776665 34433332222 3334432 22222222 1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673 335 MVHKIPDFNTVKLLVEGLVKKKKIKEAKG 363 (403)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (403)
+.. +.+.+....+..+-...|++..|..
T Consensus 323 slk-~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 323 SLK-PNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred hcC-ccchHHHHHHHHHHHhccchHHHHH
Confidence 111 2334455555555556666555543
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.13 Score=42.40 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=107.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL 147 (403)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 147 (403)
-.......|++.+|..+|....... +.+......++.+|...|+++.|..++..+....-.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3455678899999999999887533 333555667899999999999999999988664322222233344666777777
Q ss_pred cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
..+...+-.+.-.. +-|...-..+...+...|+.+.|++.+-.+.+. |. -|...-..++..+...|.-+.+...
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 77777777776432 336667778888899999999998887776544 33 3566777888888777754444433
Q ss_pred H
Q 015673 226 W 226 (403)
Q Consensus 226 ~ 226 (403)
+
T Consensus 295 ~ 295 (304)
T COG3118 295 Y 295 (304)
T ss_pred H
Confidence 3
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.55 E-value=0.4 Score=40.54 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=10.0
Q ss_pred HHHccCChHHHHHHHHH
Q 015673 316 HLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 316 ~~~~~~~~~~a~~~~~~ 332 (403)
.+.+.+++++|.+.|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34455666666666654
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.53 E-value=0.11 Score=37.22 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 015673 135 FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV 199 (403)
Q Consensus 135 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (403)
....+..+...|.-+.-.++++.+.+ .-.+++...-.+..+|.+.|+..++-+++.++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666666543 2334555556666666666666666666666666655
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.41 E-value=0.15 Score=46.53 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH------HHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHH
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEP------YLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISF 135 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 135 (403)
..++....=.|+-+.+++++...........+. .|...+..++. ..+.+.|.++++.+.+.- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 355666666677777777777665433332222 23444433332 456777888888887743 565555
Q ss_pred HHH-HHHHHhcCCcCcHHHHHHHchhhCCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH-
Q 015673 136 NAL-LFACTRSRLYDKVPILFDEIPKKYNL--SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN- 211 (403)
Q Consensus 136 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 211 (403)
... .+.+...|+.++|++.|+.......- +.....+--+.-++.-.++|++|.+.|..+.+.+ ..+..+|..+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 34466678888888888865431111 1123344556666777889999999999988763 235555554443
Q ss_pred HHHhcCCH-------HHHHHHHHHHHHc
Q 015673 212 CLYKQGNA-------EEAERLWSEMEKK 232 (403)
Q Consensus 212 ~~~~~~~~-------~~a~~~~~~~~~~ 232 (403)
++...|+. ++|..+|.++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 34456766 8888888877543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.41 E-value=0.27 Score=43.80 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 015673 276 NFLMTCYCKNEMMDEAKKVYEGLEENG-CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD-FNTVKLLVEGLV 353 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 353 (403)
..+..++-+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+...+.+ ...|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345566667888888888888887542 112334667788888888888888888877644332222 233443322222
Q ss_pred hcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 354 KKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
..++.-.+.. .-+++..+....+..++.+|...++.
T Consensus 343 av~d~fs~e~---a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEA---ASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchh---hhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222110100 01223455556677778887777665
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.46 Score=39.42 Aligned_cols=172 Identities=10% Similarity=0.015 Sum_probs=111.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
+..+.....-+...+++++.... +....+ .-.......|++.+|...|+........ +...-..+..+|...|+.
T Consensus 110 VdgF~G~qPesqlr~~ld~~~~~---~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~ 184 (304)
T COG3118 110 VDGFQGAQPESQLRQFLDKVLPA---EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDV 184 (304)
T ss_pred ccccCCCCcHHHHHHHHHHhcCh---HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCCh
Confidence 34443333334455566665421 222233 3444566889999999999999886654 567778889999999999
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
+.|..++..+..+ --.........-|..+.+.....+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.
T Consensus 185 e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 185 EAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998653 11112222233455666666666666666655553 33667777888899999999999988766
Q ss_pred HHHcC-CCCchHHHHHHHhhh
Q 015673 229 MEKKG-VDLDVAAYNVRITNT 248 (403)
Q Consensus 229 ~~~~~-~~~~~~~~~~ll~~~ 248 (403)
+.+.+ -.-|...-..++..+
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHhcccccCcHHHHHHHHHH
Confidence 66542 234555556666666
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.34 E-value=0.54 Score=39.77 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015673 350 EGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~ 370 (403)
..+.+.+++++|.+.++-..+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHHH
Confidence 346678999999999986543
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.42 Score=38.42 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCCHHHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLE----ENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVH---KIPDFNTVK 346 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 346 (403)
+....+.+.+...+++|-..+.+-. +..-.++. ..|...|-.+....++..|.+.+++-.+.+ -+.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344445556666666555444321 11111222 234455555666677888888887744331 134556666
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 015673 347 LLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~ 365 (403)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777666 567777766554
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.29 E-value=0.039 Score=48.57 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=56.2
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA----TTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667889999999999999999999998887 4553 35889999999999999999999999875
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.077 Score=45.73 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=70.9
Q ss_pred HHHhcCChHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673 281 CYCKNEMMDEAKKVYEGLEEN-----GC---------SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~~~~-----~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (403)
.|.+.|++..|..-|++.... +. ..-..++..+..++.+.+++..|+...++.+..+ ++|...+.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 455666666666665553321 11 1123466778889999999999999999999887 78888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.=..+|...|+++.|+..|+++.+..|.|
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 88999999999999999999999844444
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.13 Score=46.27 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=97.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
.+...-.++++++.++.+.-.--+..| ....+.++..+.+.|.++.|+++..+-. .-.....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 444556677888766665211011122 4557778888888899998888743321 223456678888
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.
T Consensus 335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 8888776655 2667899999999999999999988886533 45667778888888888888777
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE 262 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 262 (403)
....|- ++..+.++ ..|+.++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 766542 23333333 56777777766654
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.85 Score=40.83 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=90.1
Q ss_pred HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673 29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (403)
..++...-+..+++.-++.-.++++.+ |. -..+|..+. --....+.++.+++++..+.+.. .+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~--pd-CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg------- 235 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN--PD-CADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLG------- 235 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh--hh-hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhc-------
Confidence 345555556667777777777777766 42 223332222 22344567777777776532111 010
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673 109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (403)
+....+..-..++.....+..+-..+-..+..++.+.|+.++|++.++++.+......+......|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 00000000111122222222233344455666777888888999998888764322224456778888888889999888
Q ss_pred HHHHHHHhCCCCC-chhhHHHHH
Q 015673 189 ELLNEMENKGVEV-TTVTYTTVL 210 (403)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~ll 210 (403)
.++.+-.+...+. -...|+..+
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHH
Confidence 8888875543322 233455444
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.12 E-value=0.37 Score=35.79 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ 109 (403)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (403)
++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444332 2333344444444443
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.06 E-value=1.1 Score=40.90 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=66.5
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
+..+|..-+..-...|+++...-+|+...-. +..-...|-..+.-....|+.+-|..++....+...+..+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777777888888888888876531 111233455555555566888888887777666554444444333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 351 GLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..-..|+++.|..+++.+.+.. |+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg 398 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PG 398 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-Cc
Confidence 4445678888888888888766 54
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.05 E-value=0.54 Score=37.06 Aligned_cols=178 Identities=13% Similarity=0.050 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673 203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282 (403)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (403)
+.+||.+.--+...|+++.|.+.|+...+....-+-...|..+..+..|++..|.+-+...-+.+ +.|+ |.+|--..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHHHHH
Confidence 46677777777888999999999998888765555555666666668888888888777776653 2122 22222111
Q ss_pred H-hcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC------CCCHHHHHHHHHHHHh
Q 015673 283 C-KNEMMDEAKKVYE-GLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK------IPDFNTVKLLVEGLVK 354 (403)
Q Consensus 283 ~-~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 354 (403)
. +.-+..+|..-+. +.. ..|..-|...|..|.- |++. ...+++.+....- ..-.+||..+..-+..
T Consensus 176 ~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 1 2335555554433 333 2344445444433322 1111 1112233222110 0124577778888889
Q ss_pred cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCC
Q 015673 355 KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (403)
.|+.++|..+|+-......-+.+..--++++...+
T Consensus 250 ~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l 284 (297)
T COG4785 250 LGDLDEATALFKLAVANNVYNFVEHRYALLELSLL 284 (297)
T ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 99999999999887764333333333344443333
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.95 E-value=0.21 Score=35.69 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=64.5
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH---HHHHHHHHHh
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP---YLCNLIRSYG 108 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 108 (403)
.-+++..|+.+.|++.|.+.+..- |. ...+|+.-.+++.-+|+.++|.+-+++...-..+.... .|..-...|-
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~--P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA--PE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc--cc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 456777888888888888887766 33 55677888888888888888888877776533333322 2344445566
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 015673 109 QAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~ 127 (403)
..|+-+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6788888888787776655
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.91 E-value=0.38 Score=40.82 Aligned_cols=132 Identities=17% Similarity=0.295 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCchHHHHHHHhhhcCCC---
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYK--QG----NAEEAERLWSEMEKKGV---DLDVAAYNVRITNTYGGD--- 252 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~--- 252 (403)
++.+.+++.|.+.|+..+..+|-+..-.... .. ....+..+++.|.+... .++...+..++..- .++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~-~~~~e~ 157 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMT-SEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcc-cccHHH
Confidence 3456677777777777766666553333322 12 24567788888877642 23445555554432 222
Q ss_pred -hHHHHHHHHHHHHCCCCCChh--cHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015673 253 -PERLKELIDEMRDAGLKPDTI--SYNFLMTCYCKNEM--MDEAKKVYEGLEENGCSPNATTFRTWIYHL 317 (403)
Q Consensus 253 -~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (403)
.+.++.+|+.+.+.|+..+-. ....++..+....+ ...+..+++.+.+.|+++....|..+.-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 356677777777766654332 22222222221111 446778888888888888777776655433
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.93 Score=43.15 Aligned_cols=187 Identities=13% Similarity=0.032 Sum_probs=125.4
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
....+.+....+..+.+...++-|+.+-+. .+..+............-+.+.|++++|...|-+... ...+
T Consensus 330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~---- 400 (933)
T KOG2114|consen 330 HELIEKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP---- 400 (933)
T ss_pred eeeeeccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh----
Confidence 344455677788888898899999887543 3322322333334445666788999999998887763 2221
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..+|.-|.......+-...++.+.+.|.. +...-..|+.+|.+.++.++..++.+... . |.. ..-....+..+.+
T Consensus 401 s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRK 475 (933)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHH
Confidence 23666677777788888888999998885 77778889999999999988887777664 2 321 1123456667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
.+-.++|.-+-.+... +......+ +-..+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777777666554433 23333333 34567899999888775
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.43 Score=40.23 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=106.4
Q ss_pred HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH----HHHHHHHHhcC
Q 015673 142 CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY----TTVLNCLYKQG 217 (403)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~ 217 (403)
..-.|+..+|...++++.+ ..|.|...+.-.=.+|.-.|+.+.....++++... ..+|...| ..+.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3457888999999999987 66778888888889999999999999999988765 23343222 33344556789
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC---CChhcHHHHHHHHHhcCChHHHHH
Q 015673 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLK---PDTISYNFLMTCYCKNEMMDEAKK 293 (403)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 293 (403)
-+++|.+.-++..+.+ +.|.-.-......+ -.|++.++.++..+-...--. .-...|-...-.+...+.++.|+.
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999998888763 22333444444444 778899988887655432100 011233444555667799999999
Q ss_pred HHHHHH
Q 015673 294 VYEGLE 299 (403)
Q Consensus 294 ~~~~~~ 299 (403)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998744
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.68 E-value=0.044 Score=31.09 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=17.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 015673 310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTV 345 (403)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (403)
+..+...|...|++++|+++|+++++.. +.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~ 38 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAW 38 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHH
Confidence 4444555555555555555555555543 3333333
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.63 E-value=0.82 Score=36.12 Aligned_cols=65 Identities=20% Similarity=0.088 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673 95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160 (403)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 160 (403)
.-+.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.=|. +.-.|+++.|.+-+.+.-+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 3445677777777788888888888888877654422222232222 3345777777766655544
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.61 E-value=0.64 Score=42.86 Aligned_cols=199 Identities=10% Similarity=0.041 Sum_probs=110.1
Q ss_pred hhhccCCCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhH-----HHHHHHHHhcCCcchHHHH
Q 015673 10 LCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQ-----DLTVRRLAKSKRFSDIETL 84 (403)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-----~~l~~~~~~~~~~~~a~~~ 84 (403)
.+........+..|+.. .+...++-.|.+.+|.++|.+--..+ . ....| .-.++-+...|.-++-..+
T Consensus 620 i~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--R--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--R--ALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--h--HHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 33333333444444443 23456677788888888886653322 0 00111 1123334444544444433
Q ss_pred HHHhhc---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH------HHHhCCCCC---cHHHHHHHHHHHHhcCCcCcHH
Q 015673 85 IESHKN---DPKITQEPYLCNLIRSYGQAGMFDHAMRTFD------QMDELGTPR---SVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
.++-.. ....| ......+...|+.++|..+.- .+.+.+-+. +..+...+..-+.+...+..|-
T Consensus 693 ~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 693 IRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 333211 11111 224455566788777766532 122222222 3444555555566677788899
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-----------hhHHHHHHHHHhcCCHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-----------VTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ll~~~~~~~~~~~ 221 (403)
++|..|-. ...+++.....++|++|+.+-+...+. .||+ .-|...-.+|.+.|+-.+
T Consensus 768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 99988842 256778888999999999998887653 2332 223444567778888888
Q ss_pred HHHHHHHHHHc
Q 015673 222 AERLWSEMEKK 232 (403)
Q Consensus 222 a~~~~~~~~~~ 232 (403)
|.++++++...
T Consensus 836 A~~vLeQLtnn 846 (1081)
T KOG1538|consen 836 AVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHhhhh
Confidence 88888777554
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.59 E-value=1.5 Score=38.60 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=43.7
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP---NATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
...+|..++..+.+.|.++.|...+..+...+... .+.........+...|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888777543111 233444455667777888888887777666
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.58 E-value=0.99 Score=36.52 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015673 282 YCKNEMMDEAKKVYEGLEENGCSP-NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 360 (403)
+...++.+.+...+....... .. ....+..+...+...++++.|...+....... +.....+..+...+...+..++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHH
Confidence 444555555555555555442 11 23445555555555556666666665555432 1112333333333334455566
Q ss_pred HHHHHHHHHH
Q 015673 361 AKGVIRTIKK 370 (403)
Q Consensus 361 a~~~~~~~~~ 370 (403)
+...+.+..+
T Consensus 255 ~~~~~~~~~~ 264 (291)
T COG0457 255 ALEALEKALE 264 (291)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.43 Score=45.22 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=99.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL----LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
...-+..+.+...++-|+.+-+.-. .+..+...+ ..-+.+.|++++|...|-+.+. -+.| ..+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHH
Confidence 3445566666777777766644332 233333333 3345667888888887777653 2222 2345
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE 254 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 254 (403)
.-|.....+..-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+ ..+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5566666677777788888888774 55666788888888888887766665543 2211 01122333333 344444
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
+|..+-..... +......++ -..+++++|++.+..+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 44444333321 333333333 35677888888776543
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=95.48 E-value=0.74 Score=40.98 Aligned_cols=148 Identities=9% Similarity=-0.000 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhh---hccCCCCcchhhHHHHHHHHHhc---------CCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 40 DPDKALDIYSSVS---KHYASPVSSRYAQDLTVRRLAKS---------KRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 40 ~~~~A~~~~~~~~---~~~~~p~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
..+.|+.+|.++. ..+ |. ...+|..+..++... ....+|.++-+.... -.+.+......+..+.
T Consensus 273 ~~~~Al~lf~ra~~~~~ld--p~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-ld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ--TL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-ITTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHHhhcccCC--cc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 3467888899998 544 43 444554444333222 223345555555553 3445555555566666
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (403)
...++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+-.....-.......+..|+.. ..+.|
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 6667777888888877775532 344555555555667777777777777553211111222333334445443 35556
Q ss_pred HHHHHH
Q 015673 188 LELLNE 193 (403)
Q Consensus 188 ~~~~~~ 193 (403)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 655543
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.42 E-value=0.65 Score=33.41 Aligned_cols=62 Identities=27% Similarity=0.368 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
....+......|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555555555555555555442 23455555555666666666666666666655554
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.66 Score=33.28 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=23.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
...|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444443 222344444444444444444444444444443
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=95.15 E-value=1.1 Score=39.92 Aligned_cols=159 Identities=11% Similarity=0.085 Sum_probs=99.1
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCchHHHHHHHhhh---c--------CCChHHHHHHHHHHH
Q 015673 204 VTY--TTVLNCLYKQ-----GNAEEAERLWSEMEK-KGVDLDVAAYNVRITNT---Y--------GGDPERLKELIDEMR 264 (403)
Q Consensus 204 ~~~--~~ll~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~---~--------~~~~~~a~~~~~~~~ 264 (403)
..| ..++.+.... ...+.|..+|.+... +...|+-..-...+..+ . ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 235678888888872 22355533222222221 1 234456677777777
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF- 342 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 342 (403)
+.+ +.|......+..+..-.++++.|..+|+..... .|| ..+|......+.-.|+.++|.+.+++..+.. |..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhh
Confidence 775 447777777777777788899999999988876 444 4456666666777899999999998877543 332
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 343 --NTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 343 --~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
......++.|+..+ .++|++++-+-
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 33344455666555 56777776544
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.23 Score=40.68 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCchhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhc
Q 015673 200 EVTTVTYTTVLNCLYK-----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTIS 274 (403)
Q Consensus 200 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (403)
+.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.++..+-.|. +.|. ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------------fiP~-nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------------FIPQ-NV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc---------------cccH-HH
Confidence 3466667666666643 3456666667777777777777777777776552121 1111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (403)
+....-.|-+. -+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22222222222 23467788888888888888888888888877654
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.25 Score=40.54 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 015673 324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVIRTIK 369 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 369 (403)
+=+++++++|...|+.||.++-..|++++.+.+-. .+..++.--|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 45789999999999999999999999999988763 33334333343
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.07 E-value=2.7 Score=38.59 Aligned_cols=352 Identities=11% Similarity=0.034 Sum_probs=167.4
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHH-HHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTV-RRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNL 103 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 103 (403)
-|......=.+.|..+.+.++|++.+..- | .+...|.... ......|+.+...+.|+...... .-.+...|...
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~ai--p-~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky 157 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAI--P-LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY 157 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh--h-hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence 34444555566788888888888887755 3 2444443333 33335567777777888776432 23445667778
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH---hc------CCcCcHHHHHHHchh--------------
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT---RS------RLYDKVPILFDEIPK-------------- 160 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~~~~~~~~~-------------- 160 (403)
|..-...+++.....+|+++++. ...-++....-|. .. ...+++.++-....+
T Consensus 158 ie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~ 233 (577)
T KOG1258|consen 158 IEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL 233 (577)
T ss_pred HHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence 88777888888888888888773 1222222211111 11 112222222111111
Q ss_pred -----hCCCCCchHH--HHHHH-------HHHHhcCChHHHHHHHHHHHhC---CC----CCchhhHHHHHHHHHhcCCH
Q 015673 161 -----KYNLSPDKIS--YGLLL-------KSHCDSGSSDKALELLNEMENK---GV----EVTTVTYTTVLNCLYKQGNA 219 (403)
Q Consensus 161 -----~~~~~~~~~~--~~~l~-------~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~ 219 (403)
..+.+.+..+ .+.+- .++...-........|+.-... .+ +++..+|...+..-...|+.
T Consensus 234 ~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 234 EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 0000001000 11111 1111111122222222222221 01 22445677777777777888
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
+.+.-.|+...-.--.-+...++-+...-..|+.+.+..++....+-.++-.+.+--.-....-..|+++.|..+++.+.
T Consensus 314 ~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 314 SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 88777777764321111222222222222447777777666665554332222211111122234567777877777777
Q ss_pred HCCCCCCHH-HHHHHHHHHHccCChHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 015673 300 ENGCSPNAT-TFRTWIYHLCGSGNFDKAY---KVFKESVMVHKIPDFNTVKLLVEG-----LVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 300 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~ 370 (403)
+.- |+.. .-..-+....+.|+.+.+. .++....+ | +-+..+...+.-- +.-.++.+.|..++.++.+
T Consensus 394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 394 SEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred hhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 652 4432 2222233445566666665 33322221 2 2222222222222 2235667777777777776
Q ss_pred hCCchhHHHHHHHHHHhCCC
Q 015673 371 KFPPNVLRAWKKVEEELGLV 390 (403)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~ 390 (403)
..+++.. .|..+..-.-..
T Consensus 470 ~~~~~k~-~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 470 ILPDCKV-LYLELIRFELIQ 488 (577)
T ss_pred cCCccHH-HHHHHHHHHHhC
Confidence 5554433 555555444333
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.03 E-value=1.1 Score=34.05 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC---CChHHHHHHHHHHH
Q 015673 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG---GDPERLKELIDEMR 264 (403)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~a~~~~~~~~ 264 (403)
.++++.+.+.+++|+...+..+++.+.+.|++....+ +...++-+|.......+-.+.. .-.+.|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555566677777777777777777776554433 3333444444433333322211 11222233333222
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 298 (403)
. .+..++..+...|++-+|.++.+..
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1 2344555566666666666666553
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.90 E-value=3.9 Score=39.55 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=117.2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHH-HHhcCCcCcHHHHHHHchhhC---CCCCchHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSV-------ISFNALLFA-CTRSRLYDKVPILFDEIPKKY---NLSPDKISYGLL 174 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l 174 (403)
......++++|..++.++...-..|+. ..|+.|-.. ....|+++++.++.+...... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344567899999888887553222221 133333222 345678888888877765521 122345566777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHcC---CC---CchHHH
Q 015673 175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVL-----NCLYKQGNA--EEAERLWSEMEKKG---VD---LDVAAY 241 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~ 241 (403)
..+..-.|+++.|..+.....+....-+...+.... ..+...|+. .+....|....... .. +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999998887766543233433333222 234556633 23333333332221 01 112223
Q ss_pred HHHHhhh-c-CCChHHHHHHHHHHHHCCCCCChhc--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 015673 242 NVRITNT-Y-GGDPERLKELIDEMRDAGLKPDTIS--YNFLMTCYCKNEMMDEAKKVYEGLEENGCSP----NATTFRTW 313 (403)
Q Consensus 242 ~~ll~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l 313 (403)
..++.+. + .+...++..-+.-.......|-... +..|+......|+.++|...+.++......+ +..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3333333 2 1222222222222222211221122 2367788888999999999998887543222 22222222
Q ss_pred HH--HHHccCChHHHHHHHHH
Q 015673 314 IY--HLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 314 ~~--~~~~~~~~~~a~~~~~~ 332 (403)
+. .....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23456777777766655
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=1 Score=38.12 Aligned_cols=151 Identities=9% Similarity=-0.024 Sum_probs=79.9
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHhcCCcC
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF----NALLFACTRSRLYD 149 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~ 149 (403)
..|++.+|-..++++.+ ..|.+--.+...-++|...|+.+.-...++++... ..+|...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45666666666666662 44444445555556666667766666666666542 11233222 23333455667777
Q ss_pred cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE---VTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 150 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
+|++.-++..+ -.+-|.....++...+.-.|++.++.++..+-...--. .-.+.|=-..-.+...+.++.|+.+|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77776666654 22335555666666666667777776665543322000 00111212223344556777777777
Q ss_pred HH
Q 015673 227 SE 228 (403)
Q Consensus 227 ~~ 228 (403)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.89 E-value=0.4 Score=39.87 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=58.8
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTVKL 347 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 347 (403)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677778888888888888888888765 66777888888888888888888888877655 367777776665
Q ss_pred HHHH
Q 015673 348 LVEG 351 (403)
Q Consensus 348 l~~~ 351 (403)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.72 E-value=0.45 Score=36.96 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT--TVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666677777777777777777666533322 23445566666666777776666665544
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.62 E-value=1.3 Score=32.80 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 015673 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLY 214 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 214 (403)
++..+...+.+.....+++.+...+. .+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33333334444444444444443331 23334444444443
No 275
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.54 E-value=4.6 Score=38.68 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=106.6
Q ss_pred HHHHHHHHhh-hccCCCCcchhhHHHHHHHHH-hcCCcchHHHHHHHhhcCCCCCCHH---H--HHHHHHHHhccCCHHH
Q 015673 43 KALDIYSSVS-KHYASPVSSRYAQDLTVRRLA-KSKRFSDIETLIESHKNDPKITQEP---Y--LCNLIRSYGQAGMFDH 115 (403)
Q Consensus 43 ~A~~~~~~~~-~~~~~p~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---~--~~~l~~~~~~~~~~~~ 115 (403)
.|+..++.+. +....|.....++..++..+. ...+++.|+..+++.......++-. . -..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3566666666 444444445555566677666 6688999999999875322222211 1 123566666666555
Q ss_pred HHHHHHHHHhCCC----CCcHHHHHHH-HHHHHhcCCcCcHHHHHHHchhhCC--CCCchHHHHHHHHHHH--hcCChHH
Q 015673 116 AMRTFDQMDELGT----PRSVISFNAL-LFACTRSRLYDKVPILFDEIPKKYN--LSPDKISYGLLLKSHC--DSGSSDK 186 (403)
Q Consensus 116 A~~~~~~~~~~~~----~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~ 186 (403)
|...+++..+.-- .+-...|..+ +..+...+++..|.+.++.+..... ..|-...+..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 8888887655221 1222333333 2333334788889998888865432 2233344444444433 4566777
Q ss_pred HHHHHHHHHhCC---------CCCchhhHHHHHHHHH--hcCCHHHHHHHHHHH
Q 015673 187 ALELLNEMENKG---------VEVTTVTYTTVLNCLY--KQGNAEEAERLWSEM 229 (403)
Q Consensus 187 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 229 (403)
+.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777763321 1345566777766554 567766766665554
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.52 E-value=2.8 Score=36.07 Aligned_cols=121 Identities=9% Similarity=-0.034 Sum_probs=62.0
Q ss_pred cCCChHHHHHHHHHHHHCCC-----CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHH-----HHH
Q 015673 249 YGGDPERLKELIDEMRDAGL-----KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE----NGCSPNATTFR-----TWI 314 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~-----~l~ 314 (403)
..+.++++++.|+...+.-. -....++..|...|.+..|+++|.-+..+..+ .++..-...|. .|.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 44555555555555433210 11234566667777777777777665554432 22211111222 233
Q ss_pred HHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 315 YHLCGSGNFDKAYKVFKESVMV----HKIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
.++...|+.-.|.+.-++..+. |-.+ .......+.+.|...|+.+.|..-++...
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 4556666666666666554432 3222 22334556667777777777666665543
No 277
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.52 E-value=0.97 Score=30.80 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=40.2
Q ss_pred HHHHHHHHccCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 311 RTWIYHLCGSGNFD--KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 311 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..--..|....+.+ +..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.+..+.
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 33333444434333 566667777777778888888888888888888888888888887664443
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.51 E-value=0.055 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (403)
|++.++.. |.++..|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 556667777777777777776664
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.46 E-value=0.0047 Score=46.30 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=88.0
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
...++..+.+.+.+.....+++.+...+ +..+....+.++..|++.++.+...++++... . .-...++..|
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~----yd~~~~~~~c 80 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N----YDLDKALRLC 80 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S----S-CTHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHccccc---c----cCHHHHHHHH
Confidence 3456788888899999999999998766 34456777889999999988888877776322 1 1124577778
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (403)
.+.|.+++|.-++.++-...-. +..+...++++.|.+...+. ++...|..++..|...+..
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTCT
T ss_pred HhcchHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCcc
Confidence 8888888888877765432111 11244556777777444443 3577788888888766543
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.41 E-value=1.9 Score=36.97 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhh
Q 015673 134 SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVT 205 (403)
Q Consensus 134 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 205 (403)
+|..+..++-+.-++.+++.+-+.-....|..|. -....++..++...+.++++++.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444555555555555554444332233331 12334566777777888888888887754311 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCchHHHHH-----HHhhh-cCCChHHHHHHHHHHH----HCCCCC-
Q 015673 206 YTTVLNCLYKQGNAEEAERLWSEMEKK----GVDLDVAAYNV-----RITNT-YGGDPERLKELIDEMR----DAGLKP- 270 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~-----ll~~~-~~~~~~~a~~~~~~~~----~~~~~~- 270 (403)
+..|...|.+..|+++|.-...+..+. ++..-..-|.. +..++ ..|....|.+.-++.. ..|-++
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888988887766554332 22211112221 22233 5566666666665543 334222
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
-......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12344567788889999999888777643
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.36 E-value=0.32 Score=37.79 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---CcHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE--PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP---RSVISFNA 137 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~ 137 (403)
..+..++..|.+.|+.+.|.+.|.++......+.. ..+..+|+.....+++..+...+.++...--. .+...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44556667777777777777777776543322222 23455666666677777776666655432111 11111111
Q ss_pred HHHH--HHhcCCcCcHHHHHHHchh
Q 015673 138 LLFA--CTRSRLYDKVPILFDEIPK 160 (403)
Q Consensus 138 ll~~--~~~~~~~~~a~~~~~~~~~ 160 (403)
...+ +...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 3345677777766666644
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.21 E-value=0.57 Score=31.49 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
=++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++.+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 3555556666666666777777777777777777777777777666443
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.14 E-value=0.13 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 345 VKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
+..+..++.+.|++++|.+.|+++.+.+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345677788888888888888888877764
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=0.97 Score=37.70 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh----hCCCCCchHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK----KYNLSPDKISYGL 173 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 173 (403)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566777777888888888888888776654 777788888888888888888877777643 3467777777666
Q ss_pred HHHH
Q 015673 174 LLKS 177 (403)
Q Consensus 174 l~~~ 177 (403)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.13 E-value=2.5 Score=34.05 Aligned_cols=223 Identities=18% Similarity=0.112 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHH
Q 015673 111 GMFDHAMRTFDQMDELGTP-RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALE 189 (403)
Q Consensus 111 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (403)
+....+...+......... .....+......+...+.+..+...+...............+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443221 123455555555666666666666655554210122334445555566666666777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHhhh-cCCChHHHHHHHHHHHH
Q 015673 190 LLNEMENKGVEVTTVTYTTVLN-CLYKQGNAEEAERLWSEMEKKGVD--LDVAAYNVRITNT-YGGDPERLKELIDEMRD 265 (403)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~ 265 (403)
.+.........+ ......... ++...|+++.+...+.+....... .....+......+ ..++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543222 122222222 567777777777777777442110 1112222222223 56788888888888776
Q ss_pred CCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 266 AGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 266 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
.. .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+++...+.+.....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 52 22 3556777777788888888888888888765 333 3444444455556677888888888877654
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.97 E-value=2 Score=32.35 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=28.6
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYN-FLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
..++.+.+..++..+.-. +|...... .-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 556666666666666554 44332222 1223345667777777777776654
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.78 E-value=0.28 Score=25.61 Aligned_cols=30 Identities=10% Similarity=-0.071 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
..+..+..++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 345566667777777777777777766533
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.63 E-value=0.21 Score=26.74 Aligned_cols=26 Identities=8% Similarity=-0.073 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 344 TVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888888888888888888854
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.44 E-value=0.24 Score=26.55 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEME 230 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (403)
+|..|..+|.+.|++++|+.++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887744
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=2.7 Score=32.05 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=7.3
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015673 351 GLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~ 368 (403)
+-.+.|++..|.+.|..+
T Consensus 176 Aa~kagd~a~A~~~F~qi 193 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhccchHHHHHHHHHH
Confidence 333444444444444443
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=3.2 Score=32.36 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--
Q 015673 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYN-----FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR-- 311 (403)
Q Consensus 239 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-- 311 (403)
..|..++.....+.. +.....+.+.... ...+|. .+...+...|++++|..-++..... +.| ..+.
T Consensus 55 ~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l 127 (207)
T COG2976 55 AQYQNAIKAVQAKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKAL 127 (207)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHH
Confidence 344444444533444 4445555555432 123332 3455678899999999999987753 222 2333
Q ss_pred ---HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 312 ---TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 312 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.+.+.....|.+|+|+..++.....++. ......-.+++...|+-++|+.-|++..+..+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3456778899999999999876654422 2234445788999999999999999998865433
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=3 Score=32.53 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHH-----HHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNA-----LLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
+...+...+++++|...++..... |....+.. |.......|.+++|+..++..... + -.......-...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~--w~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-S--WAAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-c--HHHHHHHHhhhH
Confidence 455566666666666666655542 22233322 233455566666666666665432 1 122233444556
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 015673 178 HCDSGSSDKALELLNEMENKG 198 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~ 198 (403)
+...|+-++|..-|++..+.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 666666666666666666553
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.04 E-value=6.8 Score=35.55 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 015673 131 SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVL 210 (403)
Q Consensus 131 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 210 (403)
|.....+++..+..+..+.-+..+-.+|..- ..+...|..++++|... ..+.-..+|+++.+..+. |...-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 4444555555555555555555555555432 12444455555555554 344445555555544331 222222232
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015673 211 NCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.-| ..++...+...|.++..
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHH
Confidence 222 22455555555555443
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.93 E-value=6.5 Score=35.07 Aligned_cols=140 Identities=10% Similarity=0.071 Sum_probs=70.7
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhH------HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQ------DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
.-.+.+++++.+|.++|.++.+..- .+...+ +.++++|.. ++++.....+....+... .. .|..+..
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~---~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s-~~l~LF~ 85 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKE---SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KS-AYLPLFK 85 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhh---cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--Cc-hHHHHHH
Confidence 3355667788888888887765441 111111 344555543 334444444444432211 11 1222222
Q ss_pred --HHhccCCHHHHHHHHHHHHhC--CCCC------------cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC----
Q 015673 106 --SYGQAGMFDHAMRTFDQMDEL--GTPR------------SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS---- 165 (403)
Q Consensus 106 --~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 165 (403)
.+.+.+++.+|++.+....+. +..+ |...-+..+.++...|++.++..+++++..+ -++
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~ 164 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECE 164 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-Hhhhhhc
Confidence 234667777777777766554 2211 1112244455566677777777777666553 222
Q ss_pred CchHHHHHHHHHHH
Q 015673 166 PDKISYGLLLKSHC 179 (403)
Q Consensus 166 ~~~~~~~~l~~~~~ 179 (403)
-+..+|+.++-.+.
T Consensus 165 w~~d~yd~~vlmls 178 (549)
T PF07079_consen 165 WNSDMYDRAVLMLS 178 (549)
T ss_pred ccHHHHHHHHHHHh
Confidence 45566665444443
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.84 E-value=12 Score=37.80 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh--cHHHHHHHHH
Q 015673 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI--SYNFLMTCYC 283 (403)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 283 (403)
.+....+...+.+++|.-.|+..-+. .-.+.++ ..|++.+|..+..++... -+.. +-..|+.-+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 33344444556666666665554321 1233444 667777777777666432 1211 2245666667
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES 333 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (403)
..++.-+|-++..+.... | ...+..+++...+++|.++....
T Consensus 1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 777777777777665542 1 12234466666777777766543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.74 E-value=0.53 Score=24.58 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 344 TVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 297
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.68 E-value=9.9 Score=36.55 Aligned_cols=315 Identities=12% Similarity=0.073 Sum_probs=164.9
Q ss_pred HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH-HHHHHHHHhc
Q 015673 31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY-LCNLIRSYGQ 109 (403)
Q Consensus 31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 109 (403)
-.....+.|++..+..+...+... |...-..|..+... .....+++....+++. +..|-... -......+.+
T Consensus 39 ~A~~a~~~g~~~~~~~~~~~l~d~---pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~ 111 (644)
T PRK11619 39 QIKQAWDNRQMDVVEQLMPTLKDY---PLYPYLEYRQLTQD-LMNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELAR 111 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCC---CcHhHHHHHHHHhc-cccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHH
Confidence 345556778899988887766422 22122222222211 1122455555554443 33343333 3445666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH-
Q 015673 110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL- 188 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 188 (403)
.+++...++.+.. .+.+...-.....+....|+.++|......+-.. | ......++.++..+.+.|......
T Consensus 112 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 112 REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 8888877763322 2345555566777788888877776666666443 2 234556778888877666554432
Q ss_pred -HHHHHHHhCCCCCchhhHHHHHHHH-----------H-hcCCHHHHHHHHHHHHHcCCCCchHHHH---HHHhhhcCCC
Q 015673 189 -ELLNEMENKGVEVTTVTYTTVLNCL-----------Y-KQGNAEEAERLWSEMEKKGVDLDVAAYN---VRITNTYGGD 252 (403)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~~ll~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~ 252 (403)
+=++.+...|. ...-..+...+ . -..+...+...+.. +.++...-. ..+.-+...+
T Consensus 185 w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence 22222222221 11111111111 0 00111111111111 112322222 2222225567
Q ss_pred hHHHHHHHHHHHHCC-CCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015673 253 PERLKELIDEMRDAG-LKPD--TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (403)
.+.|..++..+.... ..+. ......+.......+...+|...+....... .+......-+......++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 788999988875442 2211 1233444444444433566777776654332 2444455555566688899888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+..|.... .-...-..-+.+++...|+.++|...|+++.+
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88875533 33445555677887788999999999998854
No 298
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.61 E-value=4.2 Score=33.67 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=81.2
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccC------CCCcch-h---h-HHHHHHHHHhcCCcchHHHHHHHhhcCCCC
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYA------SPVSSR-Y---A-QDLTVRRLAKSKRFSDIETLIESHKNDPKI 94 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~------~p~~~~-~---~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (403)
..+......+.-..+|..|++..++..+.=. .+.... . . -..-|++++..+++.++....-+.-.....
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 3455556666667889999888887754320 011000 0 0 123378888888888887766555444444
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-----cCCcCcHHHHH
Q 015673 95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR-----SRLYDKVPILF 155 (403)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~ 155 (403)
.+..+...=|-.|.+.+++..+.++-.......-..+...|..++..|.. .|.+++|+++.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45555665666788888888888887777654333344556666665544 57777877766
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.42 E-value=6.3 Score=33.63 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC-------CChHHHHHHHHHHHHCCC---CCChhcHHHHHHHHHhcCC-
Q 015673 219 AEEAERLWSEMEKKGVDLDVAAYNVRITNTYG-------GDPERLKELIDEMRDAGL---KPDTISYNFLMTCYCKNEM- 287 (403)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 287 (403)
+++...+++.+.+.|..-+..+|-+....... ....++..+++.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788889999888887766654444422 345688999999998743 2234455555443 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 288 ---MDEAKKVYEGLEENGCSPNAT--TFRTWIYHLCGSGN--FDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 288 ---~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
.+.+..+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+.++++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356778888888877665443 33333332222222 4578889999999998887777765543
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=1.1 Score=37.60 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKI---TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL 139 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 139 (403)
.+....+..-....+++.++..+-++...... ++.. -...++.+. .-++++++.++..=+..|+-||-.+++.+|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 33344555555567788888877777532211 1111 123444443 346778888888888888888999999999
Q ss_pred HHHHhcCCcCcHHHHHHHchhh
Q 015673 140 FACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~ 161 (403)
+.+.+.+++.+|.++...|+.+
T Consensus 143 D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 9999999888888887777654
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.14 E-value=11 Score=36.01 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCC-----------hHHHHHHHHHHHhCC-----C-CC
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY-HLCGSGN-----------FDKAYKVFKESVMVH-----K-IP 340 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~-----~-~~ 340 (403)
..-+...|++++|..+|.-..+.+ .-....+.++. +...... ...|..+.+.....+ + ..
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 334556778888887777654321 11122333332 2222222 233444444433221 1 12
Q ss_pred CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 015673 341 DFNTVKLLVE-----GLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 341 ~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~ 369 (403)
...|+..|++ -+...|++++|.+.++++.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 2344544443 3567899999998888874
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.14 E-value=4.8 Score=31.60 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=52.8
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC-----hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673 249 YGGDPERLKELIDEMRDAGLKPD-----TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF 323 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (403)
..|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|-+...+
T Consensus 107 ~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 6677777777777777652 221 1234444456667777777777777777654 22222333334566677777
Q ss_pred HHHHHHHHHHHhCC
Q 015673 324 DKAYKVFKESVMVH 337 (403)
Q Consensus 324 ~~a~~~~~~~~~~~ 337 (403)
++|+.=|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.13 E-value=21 Score=39.07 Aligned_cols=153 Identities=10% Similarity=-0.014 Sum_probs=100.4
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVS-SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (403)
.+..+-.+.+.+.+|+-.++.-..... +.. ....+..+...|...++++...-+..... .+.. +..-|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPS-LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCcc-HHHHHHHHH
Confidence 455667788999999999998421111 111 22333444459999999999887766422 1112 334555566
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-HHHHHhcCChHHH
Q 015673 109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL-LKSHCDSGSSDKA 187 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 187 (403)
..|++..|...|+.+.+.+.. ...+++.++......|.++..+-..+-... ...+....++.+ +.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhh
Confidence 789999999999999987642 477788888877778888887776666643 333344444433 3444677788877
Q ss_pred HHHHH
Q 015673 188 LELLN 192 (403)
Q Consensus 188 ~~~~~ 192 (403)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 77665
No 304
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=11 Score=35.88 Aligned_cols=292 Identities=15% Similarity=0.123 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM--FDHAMRTFDQMDELGTPRSVISFNALLFACT 143 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 143 (403)
..++..+...+.+..|+++-+.+..... ....+|.....-+.+..+ -+++++.++.=.+... .....|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 3457777888889999988877653222 224566667776666532 2223333322222212 24456777777777
Q ss_pred hcCCcCcHHHHHHHchhhCCC---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----------CCCchhhHHHH
Q 015673 144 RSRLYDKVPILFDEIPKKYNL---SPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-----------VEVTTVTYTTV 209 (403)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l 209 (403)
..|+.+.|..+++.=.....- -.+..-+...+.-+.+.|+.+....++-.+...- .+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 788888888777654322100 0122334555666777888888777776665431 11111122211
Q ss_pred HH--------HHHhcCCHHHHHHHHH--HHH----HcCCCCchHHHHHHHhhhcC--------CChHHHHHHHHHHHH-C
Q 015673 210 LN--------CLYKQGNAEEAERLWS--EME----KKGVDLDVAAYNVRITNTYG--------GDPERLKELIDEMRD-A 266 (403)
Q Consensus 210 l~--------~~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~ll~~~~~--------~~~~~a~~~~~~~~~-~ 266 (403)
++ .+...++-.++...|. ... ..+..|+..+.......-+. ++..+-..+.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 0011111112211111 100 01112222211111110011 112222233333322 2
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346 (403)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (403)
|.....-+.+--+.-+...|+..+|.++-.++. -||-..|..-+.+++..+++++-.++-+... .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 333344556667777888899999999888777 6888999999999999999998888776543 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
-.+.+|.+.|+.++|.+++.+..
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccC
Confidence 78999999999999999988775
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.91 E-value=6.7 Score=32.83 Aligned_cols=97 Identities=9% Similarity=0.077 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHh-cC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHH
Q 015673 131 SVISFNALLFACTR-SR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYT 207 (403)
Q Consensus 131 ~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 207 (403)
|......+++.... .+ ....-.++.+-+...++..++..+...+++.+++.+++.+-.++++..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 45555555555444 11 122223334444444445556666666666666666666666666665444 3444666666
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 015673 208 TVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~ 227 (403)
.+|......|+..-..++.+
T Consensus 243 ~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhh
Confidence 66666666666655544443
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.77 E-value=4.5 Score=30.54 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=9.2
Q ss_pred cCCChHHHHHHHHHHHHC
Q 015673 249 YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~ 266 (403)
..|++.+|..+|+++.+.
T Consensus 56 ~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEER 73 (160)
T ss_pred HhCCHHHHHHHHHHHhcc
Confidence 445555555555555443
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=3.9 Score=34.50 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
-++++++.++..=...|+-||..+++.+++.+.+.+++..|.++...|.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444455444444455555555555555555555555555555544444
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.56 E-value=13 Score=35.26 Aligned_cols=179 Identities=16% Similarity=0.075 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHH-----HHhcCCcCcHHHHHHHchhh------CCCCCchHHHHHHHHHHHhc
Q 015673 113 FDHAMRTFDQMDELGTPRSVISFNALLFA-----CTRSRLYDKVPILFDEIPKK------YNLSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 181 (403)
...|.+.++...+.|. ...-..+..+ +....+.+.|+.+|+...+. .+ +....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567788887777653 2332222222 33456778888888887551 13 333455666677664
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh----cCC
Q 015673 182 G-----SSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT----YGG 251 (403)
Q Consensus 182 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 251 (403)
. +.+.|+.++....+.|.+ +....-..+..... ..+...|.++|...-+.|..+. .+...+... ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A--~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA--IYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhCCCcCC
Confidence 3 567788888888887653 43333222222222 2456788888888888764322 222222111 446
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
+...|..++++..+.| .|...--...+..+.. ++++.+...+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7888888888888876 3222211222233333 66677666666666554
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.55 E-value=13 Score=35.25 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhhhccCCCCcchhhHHHHHHHH-----HhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHHHHh
Q 015673 41 PDKALDIYSSVSKHYASPVSSRYAQDLTVRRL-----AKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 41 ~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 108 (403)
...|.+.++...+.+ +......+..++ ....+.+.|..+|+.... .+ .......+..+|.
T Consensus 228 ~~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 467888888888877 223323333332 244678888888888754 23 2223455677776
Q ss_pred ccC-----CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH---
Q 015673 109 QAG-----MFDHAMRTFDQMDELGTPRSVISFNALLFACTR-SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC--- 179 (403)
Q Consensus 109 ~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 179 (403)
+.. +.+.|+.+|...-+.|.+ +.......+..... ..+...|.++|....+. |. ...+..+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~---~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GH---ILAIYRLALCYELGL 374 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CC---hHHHHHHHHHHHhCC
Confidence 643 567788888888777653 44433333322222 23456788888887654 42 222222222222
Q ss_pred -hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 180 -DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 180 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
...+...|..++.+..+.|. |...--...+..+.. ++++.+.-.+..+...+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 23466778888888877763 332222233334444 66666666666665554
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.36 E-value=3 Score=32.76 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=48.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 015673 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV---HKIPDFNTVKLLVEGLVKKKKI 358 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 358 (403)
+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.++++.++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 456666766666654445555544444444 55677777777766654 2246677777777777777777
Q ss_pred HHHH
Q 015673 359 KEAK 362 (403)
Q Consensus 359 ~~a~ 362 (403)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7663
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.29 E-value=0.3 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHH
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
+-|...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334455555555555555555553
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.24 E-value=18 Score=36.57 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNAT--TFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
.+.+|..+|+|.+|+.+...+... .+.. +-..|+.-+...++.-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 456666777777777766655421 2222 22567778888888888888877765
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.07 E-value=0.39 Score=25.01 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=20.6
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhcc
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHY 55 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~ 55 (403)
.+..+...+...|++++|++.|+++.+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566777777788888888887777766
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.87 E-value=2.7 Score=28.39 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
|.-++.+-++.+...++.|++....+.+++|.+.+|+..|.++++.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444555555555555565556666666666666666666665554
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=3.4 Score=38.11 Aligned_cols=72 Identities=21% Similarity=0.103 Sum_probs=33.7
Q ss_pred hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015673 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE 223 (403)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (403)
+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3455555555444431 334455555555555555555555544322 233444444455544443
Q ss_pred HHHHHHHH
Q 015673 224 RLWSEMEK 231 (403)
Q Consensus 224 ~~~~~~~~ 231 (403)
.+-....+
T Consensus 713 ~la~~~~~ 720 (794)
T KOG0276|consen 713 VLASLAKK 720 (794)
T ss_pred HHHHHHHh
Confidence 33333333
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.66 E-value=0.76 Score=23.96 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDEL 126 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 126 (403)
.|..+..++...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566777777777777777777777663
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=7.1 Score=36.15 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=97.7
Q ss_pred hccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHH
Q 015673 36 RSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDH 115 (403)
Q Consensus 36 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (403)
.-.|+++.|..++..+.+ .....++..+.++|-.++|+++- ..++. -.....+.|+.+.
T Consensus 597 vmrrd~~~a~~vLp~I~k---------~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---------EIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred hhhccccccccccccCch---------hhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHH
Confidence 344566666554444431 12245666677777766665541 11211 1233456788888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEME 195 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (403)
|.++..+. -+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 656 A~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 656 AFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 87776554 3667789999999999999999998887743 5667777777788776666666666
Q ss_pred hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 196 NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 196 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
+.|. .|....+|...|+++++.+++.+-
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 6654 233445677889999988887653
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.60 E-value=11 Score=34.01 Aligned_cols=119 Identities=11% Similarity=-0.027 Sum_probs=69.4
Q ss_pred cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673 145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER 224 (403)
Q Consensus 145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (403)
.|++-.|-+-+....+++.-.|+.....+ ..+...|+++.+.+.+...... +.....+...+++...+.|+++.|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444443333333333233344443333 3345668888888877766554 33455677788888888888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCC
Q 015673 225 LWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAG 267 (403)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~ 267 (403)
.-.-|....+... .......... ..|-++++...++++...+
T Consensus 379 ~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccCCh-hheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8887777655432 2222222222 5677778887777776553
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.32 E-value=9.8 Score=31.87 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=42.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+++.....|..+|.+.+|..+.++.+..+ +.+...+-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34444567777888888888887777665 56666777777888888887777766666644
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.25 E-value=14 Score=33.64 Aligned_cols=182 Identities=10% Similarity=0.087 Sum_probs=121.9
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673 91 DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170 (403)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 170 (403)
...+.+...+.+++..+....+++-...+..+|...| .+-..+..++.+|..+ .-+.-..+|+++.+- . -.|...
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-d-fnDvv~ 134 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-D-FNDVVI 134 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-c-chhHHH
Confidence 3455666677889999999999999999999999866 6888999999999998 557788899988763 2 224444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCchHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVT------TVTYTTVLNCLYKQGNAEEAERLWSEMEKK-GVDLDVAAYNV 243 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 243 (403)
-..|...|-+ ++.+.+..+|.++... +-|. ...|.-+... -..+.+..+.+..++... |...-.+.+.-
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4455555554 8888999999888765 2221 1234333321 144667777776666543 33334445555
Q ss_pred HHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673 244 RITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282 (403)
Q Consensus 244 ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (403)
+...| ...++.+|++++..+.+.+ ..|...-..++..+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 55566 6778888888888877765 33555555555543
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.03 E-value=1.5 Score=24.79 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 348 LVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.93 E-value=1.1 Score=24.64 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888889999999988888764
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.71 E-value=3.8 Score=32.22 Aligned_cols=80 Identities=16% Similarity=0.017 Sum_probs=57.4
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC--CCCCchHHHHHHHHHHHhcCCh
Q 015673 107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY--NLSPDKISYGLLLKSHCDSGSS 184 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 184 (403)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+-. +-.+|+..+..|++.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 678888888877665545555556555555 667888888888776543 2357788899999999999998
Q ss_pred HHHH
Q 015673 185 DKAL 188 (403)
Q Consensus 185 ~~a~ 188 (403)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.71 E-value=3.7 Score=32.19 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673 72 LAKSKRFSDIETLIESHKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL 147 (403)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 147 (403)
+...|++++|..-|........+.... .|..-.-++.+.+.++.|+.-....++.++. ...+...-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 456788888888887776433222222 3445566777888888888888888775532 33444444567888888
Q ss_pred cCcHHHHHHHchh
Q 015673 148 YDKVPILFDEIPK 160 (403)
Q Consensus 148 ~~~a~~~~~~~~~ 160 (403)
+++|+.-|+++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888875
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.65 E-value=7.7 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=11.8
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHH
Q 015673 91 DPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
.+.+++...+..+++.+.+.|++.
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344444445555555555555444
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.60 E-value=2.2 Score=36.32 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=50.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
++|.+++|++.|...... .| |.+++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|...+|.
T Consensus 109 KQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 677777777777766554 34 67777777777777777777766666655432 112233444444444455555665
Q ss_pred HHHHHHHh
Q 015673 328 KVFKESVM 335 (403)
Q Consensus 328 ~~~~~~~~ 335 (403)
+-++..+.
T Consensus 186 kD~E~vL~ 193 (536)
T KOG4648|consen 186 KDCETVLA 193 (536)
T ss_pred HhHHHHHh
Confidence 55555553
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.54 E-value=3.9 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHH
Q 015673 338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWK 381 (403)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 381 (403)
..|++.+|..++.++...|+.++|.+..+++..-+|.+....|.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46899999999999999999999999999999877766555654
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.28 E-value=16 Score=32.94 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=80.3
Q ss_pred HHHHHhcCChHHHHHH-HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCC
Q 015673 175 LKSHCDSGSSDKALEL-LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGD 252 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~ 252 (403)
|.-....|++-.|-+- +..+....-.|+.. ..........|+++.+.+.+...... +.....+...++... ..|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3334456776666544 44444433334433 33344466789999999888776553 345566777777777 8899
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
++.|..+-..|....++ +...........-..|-++++...|+.+...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999888876554 34433333444456788899999998877553
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=22 Score=34.26 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHh-CCchhHHHHHHHHHHhCCC
Q 015673 339 IPDFNTVKLLVEGLVKKKKI----------KEAKGVIRTIKKK-FPPNVLRAWKKVEEELGLV 390 (403)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 390 (403)
..|.+.|..||.-....-.+ .....+++++... ..|+.......++..|...
T Consensus 687 q~D~eLWe~LI~~~ldkPe~~~~ll~i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q 749 (846)
T KOG2066|consen 687 QDDSELWEDLINYSLDKPEFIKALLNIGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQ 749 (846)
T ss_pred cCCHHHHHHHHHHhhcCcHHHHHHHHhhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhh
Confidence 34666666666554443332 2333444444432 3455555666666655543
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=25 Score=34.87 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCchHHHHHHHhhh-cCCCh--HHHHHHHHHHHHCCCCCChhcHH-
Q 015673 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGV---DLDVAAYNVRITNT-YGGDP--ERLKELIDEMRDAGLKPDTISYN- 276 (403)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~-~~~~~--~~a~~~~~~~~~~~~~~~~~~~~- 276 (403)
.-|..|+..|...|+.++|+++|.+..+..- ..-...+..++..+ ..+.. +...++-.-............+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 3477788888888888888888888766320 00111122233333 22222 33333333332221110011111
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CChHHHHHH-----HHH
Q 015673 277 -----------FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS--------GNFDKAYKV-----FKE 332 (403)
Q Consensus 277 -----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~-----~~~ 332 (403)
.-+-.|......+-+..+++.+....-.++....+.++..|+.. ++.+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 12234556667778888888888655466777777777766542 122233333 222
Q ss_pred HHhC--CCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 333 SVMV--HKI--------PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 333 ~~~~--~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+.+. ... +....|....-.+.+.|+.++|..++-....
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 2211 111 2234454445556688999999888766553
No 331
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.53 E-value=17 Score=32.10 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGT--PRSVISFNALLFACTRSRLYDKVPILFDEI 158 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 158 (403)
+..+...|..+|+++.|++.|.+...--. +-.+..|-.+|..-...|+|.....+..+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 45566666666777777766666443210 112334444555555556665555555544
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.42 E-value=1.4 Score=24.14 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.23 E-value=13 Score=30.67 Aligned_cols=187 Identities=10% Similarity=0.103 Sum_probs=107.2
Q ss_pred ccCChHHHHHHHHHhhhccCCCCcchhh---HHHHHHHHHhcCCcchHHHHHHHhhcC-----CCCCCHHHHHHHHHHHh
Q 015673 37 SEFDPDKALDIYSSVSKHYASPVSSRYA---QDLTVRRLAKSKRFSDIETLIESHKND-----PKITQEPYLCNLIRSYG 108 (403)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 108 (403)
+...+++|+.-|++..+.. +....+- ...++....+.+++++..+.+.++..- ...-+....++++...+
T Consensus 39 ~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 4568999999999998877 4433333 355678888889999888888776521 11122334566666655
Q ss_pred ccCCHHHHHHHHHHHHhC-CCCCcHH----HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC---c-------hHHHHH
Q 015673 109 QAGMFDHAMRTFDQMDEL-GTPRSVI----SFNALLFACTRSRLYDKVPILFDEIPKKYNLSP---D-------KISYGL 173 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-------~~~~~~ 173 (403)
...+.+--...|+.-.+. .-.-+.. |-..|...|...|++.+..++++++...+.... | ...|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 555555555555443221 0001222 224566667777777777777777765432211 1 234666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHH-----HhcCCHHHHHHHH
Q 015673 174 LLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCL-----YKQGNAEEAERLW 226 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~ 226 (403)
-|+.|....+-..-..+++..... ..-|.+.... .|+-| .+.|++++|-.=|
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 677777777767777777765432 1223333332 33333 3556777665433
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.73 E-value=3.3 Score=38.02 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=43.0
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHH
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI 153 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 153 (403)
..|+...|...+.................|.....+.|....|-.++.+...... ..+-++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHH
Confidence 3455555555555544222111122233455555555555566665555544331 234455555556666666666666
Q ss_pred HHHHchh
Q 015673 154 LFDEIPK 160 (403)
Q Consensus 154 ~~~~~~~ 160 (403)
.|++..+
T Consensus 698 ~~~~a~~ 704 (886)
T KOG4507|consen 698 AFRQALK 704 (886)
T ss_pred HHHHHHh
Confidence 6666554
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.41 E-value=6.1 Score=31.50 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=49.1
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG--CSPNATTFRTWIYH 316 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 316 (403)
+..+..+ +.+...+++...+.-++.+ +-|..+-..+++.++-.|++++|..-++..-+.. ..+-..+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444555 7788888888888776663 3355556677888888899999887777655431 23445567666654
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.26 E-value=0.19 Score=37.55 Aligned_cols=84 Identities=11% Similarity=0.254 Sum_probs=46.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL 147 (403)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 147 (403)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++.. +......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666666666666666665444455666666777777766656666555511 11222344555555555
Q ss_pred cCcHHHHHHHc
Q 015673 148 YDKVPILFDEI 158 (403)
Q Consensus 148 ~~~a~~~~~~~ 158 (403)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.23 E-value=2.3 Score=22.00 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777788888888888888888765
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.16 E-value=8.1 Score=27.70 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 325 KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+..+-++.+...++.|++.....-++++.+.+++..|.++|+-++.+..+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~ 117 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ 117 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH
Confidence 344455555566667777777777777777777777777777776554433
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.11 E-value=1 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 015673 346 KLLVEGLVKKKKIKEAKGVIR 366 (403)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~ 366 (403)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666654
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.25 E-value=1.9 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
|..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556666666666666666666644
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.61 E-value=5.9 Score=30.55 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhhhccCCCCcc--hhhHHHHHHHHHhcCCcchHHHHHH-------HhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 41 PDKALDIYSSVSKHYASPVSS--RYAQDLTVRRLAKSKRFSDIETLIE-------SHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 41 ~~~A~~~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
++.|.+.++.....+ |... ..-|...+.-+++..+..++..+++ +... -.|.....+..+..+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH
Confidence 566777777777777 4422 2233344444444444344444444 3332 23333344444555554332
Q ss_pred ----C-------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673 112 ----M-------FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 112 ----~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
+ +++|...|++... ..|+...|+.-+.... +|-++..++.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~ 134 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIH 134 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHH
Confidence 2 4455555555554 3377777777666653 2444554443
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.60 E-value=2.8 Score=21.66 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555554443
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.26 E-value=9.9 Score=26.14 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555556666666677777777777777777777777777666543
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.94 E-value=42 Score=33.07 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=120.5
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCch-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhC----CCCCchhhHHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDK-------ISYGLLL-KSHCDSGSSDKALELLNEMENK----GVEVTTVTYTTVL 210 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll 210 (403)
....++.+|..+..++....+ .|+. ..++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 456889999999988865422 2221 1233332 2334578899999988877654 2233456667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH---hh--h-cCCChHH--HHHHHHHHHHCCC--CC----ChhcHH
Q 015673 211 NCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI---TN--T-YGGDPER--LKELIDEMRDAGL--KP----DTISYN 276 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~--~-~~~~~~~--a~~~~~~~~~~~~--~~----~~~~~~ 276 (403)
.+..-.|++++|..+.....+..-.-+...+.... .+ + .+|+... .+..+........ +| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999887776653333433333222 22 2 5563332 2333333322210 11 123344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHHHHhCCCCC----CHHHHH
Q 015673 277 FLMTCYCKNEMMDEAKKVYEGLEENG--CSPNAT--TF--RTWIYHLCGSGNFDKAYKVFKESVMVHKIP----DFNTVK 346 (403)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 346 (403)
.++.++.+ .+.+..-...-.+.| ..|... .+ ..|+......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555554 333332222222111 122222 22 356778888999999999988877653222 222222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHH
Q 015673 347 LLVE--GLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 347 ~l~~--~~~~~g~~~~a~~~~~~ 367 (403)
..+. .....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2332 33457888877777665
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.89 E-value=1.1 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHhhhhccCChHHHHHHHHHhhhcc
Q 015673 29 SKAKSKLRSEFDPDKALDIYSSVSKHY 55 (403)
Q Consensus 29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~ 55 (403)
..+...+.+.|++++|++.|+.+++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 345555666677777777777776665
No 346
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=26 Score=30.01 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCCh----h
Q 015673 204 VTYTTVLNCLYKQGNAEEAERLWSEMEK----KGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDT----I 273 (403)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~----~ 273 (403)
..+.....-||+.||.+.|++.+.+..+ .|.+.|+..+.+-+..+ ...-+.+.++..+.+.+.|..-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455666778888888888877765433 45566666665555444 333344555555555555543322 2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
+|..+ .|....++.+|-.+|-+..
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 34332 2345567888888777655
No 347
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.14 E-value=24 Score=29.69 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=43.4
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673 268 LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (403)
-.++..+...++..+++.+++.+-.+++...... +...|...|..+|......|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3556666667777777777777777777765543 4455666777777777777776665555543
No 348
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=83.55 E-value=19 Score=27.96 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 288 MDEAKKVYEGLEENGCSPN--ATTFR-----TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~--~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
++.|+.+|+.+.+..-.|. ..... ..+..|.+.|.+++|.+++++..+ .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 4678888877775432221 11122 234578889999999999988876 3444444555555555554
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.97 E-value=31 Score=30.00 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG---SGNFDKAYKVFKES 333 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 333 (403)
+.++++..+.+ +.+......++..+.+..+.++..+-|+++.... +-+...|...+..... .-.++....+|.+.
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 34445444442 2234444445555555555555555566555542 2244455555443332 22344444444333
Q ss_pred HhC------CC----CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCchhHH-----HHHHHHHHhCC
Q 015673 334 VMV------HK----IPD-------FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK--FPPNVLR-----AWKKVEEELGL 389 (403)
Q Consensus 334 ~~~------~~----~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-----~~~~l~~~~~~ 389 (403)
+.. +. .+. ..++..+...+..+|-.+.|..+++.+.+- +.|.... .....++.++-
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWe 208 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWE 208 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhC
Confidence 221 10 000 112222333344567777777777766652 2333221 22334445555
Q ss_pred CCCCCCCCC
Q 015673 390 VPAPAVGDG 398 (403)
Q Consensus 390 ~~~~~~~~~ 398 (403)
.+.+++|+.
T Consensus 209 S~vpRiGE~ 217 (321)
T PF08424_consen 209 SEVPRIGEP 217 (321)
T ss_pred cCCCCCCCC
Confidence 555666554
No 350
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.95 E-value=49 Score=32.32 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=98.0
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHH---HHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVR---RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...++..+.+.|++++....-..|.+.- |. ....|..-+. .....+...++..+|++....-. ....|...+
T Consensus 116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~--pl-~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e~~ 190 (881)
T KOG0128|consen 116 MVQLIGLLRKLGDLEKLRQARLEMSEIA--PL-PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEEVV 190 (881)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc--CC-ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHHHH
Confidence 4457888888888887777666666655 33 2333332222 23344777888888888774333 333333333
Q ss_pred HHH-------hccCCHHHHHHHHHHHHhC-CCCCc--HHHHHHHHH---HHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673 105 RSY-------GQAGMFDHAMRTFDQMDEL-GTPRS--VISFNALLF---ACTRSRLYDKVPILFDEIPKKYNLSPDKISY 171 (403)
Q Consensus 105 ~~~-------~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (403)
..+ ...++++....+|.+.+.. |...+ ...|..++. .|..+-..+....+|..-... +.|..+-
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~---~~D~~~~ 267 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ---PLDEDTR 267 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---cchhhhh
Confidence 222 3346677788888877542 22221 222332222 233333334455555444322 2232221
Q ss_pred HHHHHHHH-------hcCChHHHHHH-------HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 172 GLLLKSHC-------DSGSSDKALEL-------LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 172 ~~l~~~~~-------~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
+.=..--. ...+++.|.+- |++..+. .++-...|-.++..+.+.|+.-....+++++..
T Consensus 268 ~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 268 GWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred HHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 11111101 11233333332 2333332 233445677788888888887776666666543
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.61 E-value=6 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=31.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 015673 319 GSGNFDKAYKVFKESVMVHKIPD--FNTVKLLVEGLVKKKKIKEAKGV 364 (403)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 364 (403)
...+.++|+..|+..++.-..+. ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888887776532221 24566677888888888777665
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.60 E-value=32 Score=29.91 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=35.6
Q ss_pred hHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673 80 DIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143 (403)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 143 (403)
.-+.+++++.+. .+.+...+..++..+.+..+.++..+-++.+...... +...|...+....
T Consensus 49 ~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 49 RKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence 344566665543 4455555566666666666666666666666664432 4555655555443
No 353
>PRK09687 putative lyase; Provisional
Probab=82.46 E-value=29 Score=29.41 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+|..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+.++.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444455555555554 33444443433322 1 122345555555553 45555555554
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.02 E-value=2.9 Score=20.53 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 345 VKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+..+...+...|++++|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444555555555555555555443
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.95 E-value=2.4 Score=27.46 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=19.5
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEP--YLCNLIRSYGQAGMFDHAMR 118 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~ 118 (403)
..++.++|+..|+........+... ++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544322222111 22335555555555555544
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.27 E-value=17 Score=29.18 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=58.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKLLVEG 351 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 351 (403)
|.+..++.+.+.+.+.+|+...+.-.+.. +.|..+-..+++.+|-.|++++|..-++-.-... ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888999999999998877664 5566678888999999999999998777665432 23445667776655
Q ss_pred H
Q 015673 352 L 352 (403)
Q Consensus 352 ~ 352 (403)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.22 E-value=21 Score=27.66 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHH---HHHHHHhcCChHHHHHHHHH-------HHHCCCCCCH-HHHHHHHHHHHccC
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNF---LMTCYCKNEMMDEAKKVYEG-------LEENGCSPNA-TTFRTWIYHLCGSG 321 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~-------~~~~~~~~~~-~~~~~l~~~~~~~~ 321 (403)
++.|.+..+.-...+ +.|...++. .+.-+++.....++..++++ .+.. .|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 455555555544442 334443332 33333344443444444443 3333 4543 46666666665543
Q ss_pred ----C-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 322 ----N-------FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 322 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
+ +++|.+.|++..+. .|+..+|+.-+... ++|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 2 44455555555533 47777776555443 5666776666553
No 358
>PRK10941 hypothetical protein; Provisional
Probab=81.06 E-value=25 Score=29.50 Aligned_cols=56 Identities=9% Similarity=-0.140 Sum_probs=25.6
Q ss_pred HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
-.+|.+.++++.|+.+.+.+.. -.|.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445555555555555555542 1122223333344445555555555555544443
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.95 E-value=21 Score=26.68 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcH-HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISY-NFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
..++.+++..++..|.-. .|+..-. ..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 567777777777777654 4433221 112334557788888888888877653
No 360
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.69 E-value=39 Score=29.62 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=88.9
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHH
Q 015673 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP----RSVISFNALLFACT 143 (403)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~ 143 (403)
.+.+.-+.|+++...+....... ..++..++..+... +.++++++...++.+...-.. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677788999986666555542 22334444444332 788999988888877542100 11222333333333
Q ss_pred hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh-----cCChHHHHHHH---HHHHh--CCCCCchhhHHHHHHHH
Q 015673 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD-----SGSSDKALELL---NEMEN--KGVEVTTVTYTTVLNCL 213 (403)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~ll~~~ 213 (403)
+...+.+..++.+-... ...+......++..... ..+++.-..++ ..+.. ........+|..++..+
T Consensus 80 ~lq~L~Elee~~~~~~~---~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSN---LSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHhHHHHHHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 33333333333332211 10112222333322211 12222222211 11111 01222345566667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHH
Q 015673 214 YKQGNAEEAERLWSEMEKKGVDL---DVAAYNVRITNT-YGGDPERLKELIDEMRD 265 (403)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~ 265 (403)
.+.|.++.|...+..+...+... ++...-.-...+ ..|+..+|...++....
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766543211 112222222233 56777777777766665
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.59 E-value=33 Score=28.75 Aligned_cols=87 Identities=7% Similarity=-0.061 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHH
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV-----EGLV 353 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~ 353 (403)
|++++..+++.+++...-.--+.--+..+.+...-|-.|.+.+.+..+.++-.......-.-+...|..++ +.+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56677777777766554433321112223334444445777777777777766665431111122244333 3344
Q ss_pred hcCCHHHHHHHH
Q 015673 354 KKKKIKEAKGVI 365 (403)
Q Consensus 354 ~~g~~~~a~~~~ 365 (403)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467777777766
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.40 E-value=11 Score=32.43 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=34.0
Q ss_pred HHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 141 ACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
-|.+.|.+++|+.+|...+. +.| |.+++..-..+|.+...+..|..-......
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677777777777776653 334 666777777777777776666555544443
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.36 E-value=4.9 Score=20.22 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 356 KKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
|+.+.+..+|+++.+..+ .....|...++
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 567788888888887554 55667876654
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.09 E-value=43 Score=29.75 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCC
Q 015673 62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL---------GTPR 130 (403)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~ 130 (403)
...+.-+...|...|+++.|.+.|.+...-- .......+..+|..-.-.|+|........+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4455666777777777777777777744211 1122234555666666677776666665555443 2344
Q ss_pred cHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673 131 SVISFNALLFACTRSRLYDKVPILFDEI 158 (403)
Q Consensus 131 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 158 (403)
...++..+...+.+ .+..|.+.|-..
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 56666666665554 555555555443
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=32 Score=28.09 Aligned_cols=109 Identities=17% Similarity=-0.013 Sum_probs=59.3
Q ss_pred HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673 29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (403)
..-.+.|....+++.|+..|.+.+..+ |.+..+ |..-+..+.+..+++.+..--...++ -.+........+..+..
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~n--P~~~~Y-~tnralchlk~~~~~~v~~dcrralq-l~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICIN--PTVASY-YTNRALCHLKLKHWEPVEEDCRRALQ-LDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcC--CCcchh-hhhHHHHHHHhhhhhhhhhhHHHHHh-cChHHHHHHHHHHHHHH
Confidence 334455566667777777777777666 543323 34445556666777666655554442 12222222334566666
Q ss_pred ccCCHHHHHHHHHHHHh----CCCCCcHHHHHHHHHH
Q 015673 109 QAGMFDHAMRTFDQMDE----LGTPRSVISFNALLFA 141 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~ll~~ 141 (403)
....+++|+..+.+..+ ..+++-......|..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred hhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777777777766532 2333334444444444
No 366
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.83 E-value=25 Score=26.30 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=39.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 283 CKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
...++.+++..++..|.-. .|+. .++.. ..+...|++++|+.+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3588999999999998864 4443 34443 34788999999999999998765
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=38 Score=28.44 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 015673 278 LMTCYCKNEMMDEAKKVYE 296 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~ 296 (403)
++..+.+.|.+.+|+.+..
T Consensus 131 li~l~y~~~~YsdalalIn 149 (421)
T COG5159 131 LIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHhcccHHHHHHHHH
Confidence 4455555566655555443
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.02 E-value=47 Score=29.72 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchH--HHHHHHhhh---cCCChHHHHHHHHHHHHC
Q 015673 211 NCLYKQGNAEEAERLWSEMEKKGVDLDVA--AYNVRITNT---YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~---~~~~~~~a~~~~~~~~~~ 266 (403)
..+...+++..|.++++.+... ++++.. .+..+..+| ...++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888776 444443 344444555 667888888888877654
No 369
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=77.35 E-value=37 Score=27.47 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=8.3
Q ss_pred HHHhcCChHHHHHHHHHH
Q 015673 281 CYCKNEMMDEAKKVYEGL 298 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~ 298 (403)
.....|++++|+.....+
T Consensus 73 ~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHhccHHHHHHHHHHh
Confidence 334445555554444443
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.26 E-value=72 Score=30.79 Aligned_cols=168 Identities=17% Similarity=0.108 Sum_probs=99.5
Q ss_pred hhHHHHHhhhh-ccCChHHHHHHHHHhhhccCCCCcchh---hHHHHHHHHHhcCCcchHHHHHHHhhcCCCC--CCHHH
Q 015673 26 ISVSKAKSKLR-SEFDPDKALDIYSSVSKHYASPVSSRY---AQDLTVRRLAKSKRFSDIETLIESHKNDPKI--TQEPY 99 (403)
Q Consensus 26 ~~~~~l~~~l~-~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 99 (403)
.+...+...|. ...++++|...+++.....-.+.-... ....+++.+.+.+... |...+++....-.. .....
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34556677776 578999999999988665532221211 1245567777777666 88888886643222 11222
Q ss_pred --HHHH-HHHHhccCCHHHHHHHHHHHHhCC---CCCcHHHHHHHHHHHH--hcCCcCcHHHHHHHchhhC-C-------
Q 015673 100 --LCNL-IRSYGQAGMFDHAMRTFDQMDELG---TPRSVISFNALLFACT--RSRLYDKVPILFDEIPKKY-N------- 163 (403)
Q Consensus 100 --~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-~------- 163 (403)
|.-+ +..+...+++..|.+.++.+.... ..|-...+..++.+.. +.+..+++.+.++.+.... +
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 2222 233333489999999998876532 2234455555555543 4455667777777663221 1
Q ss_pred CCCchHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 015673 164 LSPDKISYGLLLKSHC--DSGSSDKALELLNEM 194 (403)
Q Consensus 164 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 194 (403)
..|...+|..+++.++ ..|+++.+...++.+
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345566777766554 567777776666555
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.13 E-value=50 Score=28.41 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 015673 137 ALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV 199 (403)
Q Consensus 137 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (403)
.|.-+..+.|+..+|.+.|+.+.+...+..-......++.++....-+.+...++-+..+...
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 344445567888888888888876422222223345677777777777776666666554433
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.06 E-value=30 Score=25.80 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 015673 256 LKELIDEMRDAGLKPDTISYNFLMTCYCK 284 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (403)
+..+|.-+.+.+.+++..-|..++.++.+
T Consensus 99 ~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 99 SLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33444444444444444444444444443
No 373
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.56 E-value=66 Score=29.48 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=31.7
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcch
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSD 80 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 80 (403)
.......-...+.++.-+++++.+...+... ....++.....|.+.|....
T Consensus 20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~--~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 20 LLCQAHEQFNNSEFDRCLELLQELETRGESS--GPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHhccccc--cceeeehhhHHHHhcccchh
Confidence 3333334445678888888888888877433 33335666666777766543
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.70 E-value=35 Score=31.90 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=65.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015673 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (403)
+...|+...|.+.+.........-..+....+.....+.|-...|..++.+.+... ...+-++..+.+++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34568888888888776543211122234556677778888888888888877665 55667778888899999999999
Q ss_pred HHHHHHHHHhCC
Q 015673 362 KGVIRTIKKKFP 373 (403)
Q Consensus 362 ~~~~~~~~~~~~ 373 (403)
++.|++..+.-+
T Consensus 696 ~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 696 LEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhcCC
Confidence 999999887443
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.99 E-value=9.9 Score=34.18 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=48.6
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYN-FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
..+.++.|..++.+..+. .||...|- .-..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+++.+|.
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHH
Confidence 455666666666666654 44443332 22355666666666666666666543 111223333334444555555666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
..|+.... +.|+..-+...+.
T Consensus 93 ~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 93 LDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHhhh--cCcCcHHHHHHHH
Confidence 65555443 2344444433333
No 376
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.89 E-value=98 Score=30.69 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=92.3
Q ss_pred HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673 29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108 (403)
Q Consensus 29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (403)
+.+-..|...|++++|+++-..- |..-...+..-+..+.+.+++..|-++|.+.. ..|..+.--+.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEVaLKFl 427 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEVALKFL 427 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHHHHHHH
Confidence 34566788889999998875443 32223334455677788889999999888773 22445555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCcHHHHHH-----HHHHHH-hcCCcC----cHHHHHHHchhh--------CCCCCchHH
Q 015673 109 QAGMFDHAMRTFDQMDELGTPRSVISFNA-----LLFACT-RSRLYD----KVPILFDEIPKK--------YNLSPDKIS 170 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----ll~~~~-~~~~~~----~a~~~~~~~~~~--------~~~~~~~~~ 170 (403)
...+.+ +++.|-.=+-..++|...+-.. ++..|. +.++.+ ++..-++.-.+. ....-+...
T Consensus 428 ~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~n 506 (911)
T KOG2034|consen 428 EINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELN 506 (911)
T ss_pred hcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 666655 5444322211223333332222 223322 223322 222222211110 000111222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
..+.-+.+...|+.+....+-.-+.. |..++.-+.+.+.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444555666666555544432 456777788888888888887654
No 377
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.37 E-value=49 Score=27.03 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH
Q 015673 200 EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA 239 (403)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (403)
.|.+.....++..|. .+++++|.+++.++-+.|..|...
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 355555555555443 456777777777777776665544
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.49 E-value=12 Score=33.75 Aligned_cols=111 Identities=12% Similarity=0.010 Sum_probs=76.8
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS 106 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (403)
.+...+..+...+.++.|+.++.++++.+ |. ....|..-..++.+.+++..|+.=+.++.+.. +.....|..-..+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ld--pn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELD--PN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTA 81 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcC--Cc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHH
Confidence 34455677788899999999999999988 53 33334455577888899988888777776433 3333344444556
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673 107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 143 (403)
+.+.+.+.+|+..|+.... +.|+..-....+.-|-
T Consensus 82 ~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 6677788888888888776 4477666666665543
No 379
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.22 E-value=57 Score=27.31 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.1
Q ss_pred cCChHHHHHHHHHH
Q 015673 320 SGNFDKAYKVFKES 333 (403)
Q Consensus 320 ~~~~~~a~~~~~~~ 333 (403)
.++...|...+...
T Consensus 154 l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 154 LGNLRDANELFDTF 167 (260)
T ss_dssp TTBHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 34444444444333
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.98 E-value=61 Score=27.54 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=10.1
Q ss_pred ccCCHHHHHHHHHHHHh
Q 015673 109 QAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~ 125 (403)
..+++..+...+.....
T Consensus 53 ~~~~~~~a~~~~~~a~~ 69 (292)
T COG0790 53 YPPDYAKALKSYEKAAE 69 (292)
T ss_pred ccccHHHHHHHHHHhhh
Confidence 34556666666666655
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.90 E-value=13 Score=22.90 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
|..-.-.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444567778888888888887777754
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.85 E-value=49 Score=29.94 Aligned_cols=209 Identities=12% Similarity=0.041 Sum_probs=100.1
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchH--HHHHHHHHHHhcC
Q 015673 107 YGQAGMFDHAMRTFDQMDELGTPRSVIS--FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKI--SYGLLLKSHCDSG 182 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 182 (403)
.++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+-+ +.+.+. |..|+.. .....+...+..|
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKH-GAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhC-CCCccccCCCcccHHHHHHHCC
Confidence 3456776554 44455676666533 33445555667776433 333333 5444432 1223455566778
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHHHHHHhhhcCCChHHHHHH
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAYNVRITNTYGGDPERLKEL 259 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~a~~~ 259 (403)
+.+.+..+++.-.......+..-. +.+...+..|+.+ +++.+.+.|..|+. ...+.+..++..|+.+-+.
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~-- 152 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE-- 152 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH--
Confidence 887765555432111001111112 3334445566654 44445555655432 2233444445667765444
Q ss_pred HHHHHHCCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHH
Q 015673 260 IDEMRDAGLKPDT---ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF---RTWIYHLCGSGNFDKAYKVFKES 333 (403)
Q Consensus 260 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~ 333 (403)
.+.+.|..++. .-.+.|. ..+..|+.+ +.+.+.+.|..++...- .+.+...+..|+.+ +.+.+
T Consensus 153 --~Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 153 --LLIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred --HHHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 44445544332 2233333 334556654 34445566666554321 23444445556654 34444
Q ss_pred HhCCCCCCH
Q 015673 334 VMVHKIPDF 342 (403)
Q Consensus 334 ~~~~~~~~~ 342 (403)
++.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 556766654
No 383
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=71.83 E-value=58 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=19.1
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhh
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSK 53 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~ 53 (403)
-++.+++.+.+.+....|+.+.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 456677777777777777777777654
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.54 E-value=76 Score=28.41 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCchh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 015673 175 LKSHCDSGSSDKALELLNEMENKGVEVTTV--TYTTVLNCLY--KQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 232 (403)
+..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 655554 3444545553 356788999999988765
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.36 E-value=74 Score=28.23 Aligned_cols=55 Identities=7% Similarity=-0.050 Sum_probs=28.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHH
Q 015673 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC-GSGNFDKAYKVFKESV 334 (403)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 334 (403)
..+.+.|-+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 344555666666666666555543334444444454443 3455555555555443
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.00 E-value=18 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 346 KLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..+.-++.+.|++++|.+..+.+.+.-|.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 345567778888888888888887744433
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.77 E-value=38 Score=24.60 Aligned_cols=43 Identities=16% Similarity=-0.028 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 325 KAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 325 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (403)
++.++|+.|...++- -....|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666666655433 3345555566666666666666666654
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.26 E-value=38 Score=24.46 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
.+-+..+...++.|++.....-+++|.+.+|+..|.++|+-+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555544
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.21 E-value=12 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=11.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555443
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.14 E-value=71 Score=27.53 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCchHHHH
Q 015673 168 KISYGLLLKSHCDSGSSDKALELLNEMEN----KGVEVTTVTYTTVLNCL-YKQGNAEEAERLWSEMEKKGVDLDVAAYN 242 (403)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (403)
...+-.....||+.||.+.|++.+.+..+ .|.+.|+..+..-+..+ ....-..+-++..+.+.+.|..-+...--
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 44566677889999999999988876543 46666766554433322 22222445555555666666554432211
Q ss_pred HHHhhh---cCCChHHHHHHHHHHHH
Q 015673 243 VRITNT---YGGDPERLKELIDEMRD 265 (403)
Q Consensus 243 ~ll~~~---~~~~~~~a~~~~~~~~~ 265 (403)
-.-.++ .-.++.+|-.+|-+...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 111111 45677888888776654
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.06 E-value=19 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=11.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015673 285 NEMMDEAKKVYEGLEENGCSPNATTFRT 312 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (403)
.|-.+++..+++.|.+.|+..+...+..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 3344444444444444444444444333
No 392
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.79 E-value=68 Score=27.13 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=58.9
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhCCCCCC----H
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLE----ENGCSPNATTFR-TWIYHLCGSGNFDKAYKVFKESVMVHKIPD----F 342 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 342 (403)
...+..+...|++.+|.+.+.+++.+.. ..|.+.|....- .|.-.|....-+++-++..+.++++|...+ .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3456667788888888888777766544 345555544222 122233444446677777888888764422 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.+|.-+ .+....++.+|-.++-.....+...
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHhcccccc
Confidence 233222 2334456777777777766544443
No 393
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.58 E-value=62 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 015673 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCL 213 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 213 (403)
+++.+.+.++++++...++++...+...+..-.+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444444333333333
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.35 E-value=4.2 Score=34.70 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=56.7
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCcCcH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV-ISFNALLFACTRSRLYDKV 151 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 151 (403)
...|.++.|++.|...+. ..++....|..-...+.+.+++..|++=++...+.+ ||. .-|-.--.+-...|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~-lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE-LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccc-cCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 356778888887777763 444555556666777777888888877777776643 332 2233333334445777777
Q ss_pred HHHHHHchhhCCCCCch
Q 015673 152 PILFDEIPKKYNLSPDK 168 (403)
Q Consensus 152 ~~~~~~~~~~~~~~~~~ 168 (403)
...+....+. +..+..
T Consensus 202 a~dl~~a~kl-d~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKL-DYDEAN 217 (377)
T ss_pred HHHHHHHHhc-cccHHH
Confidence 7777777654 443333
No 395
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=68.95 E-value=49 Score=28.12 Aligned_cols=120 Identities=16% Similarity=0.248 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015673 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK 355 (403)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (403)
.++.-|++...+...++.+++=. ++..|.. ....++ .=...|+++..++..+.+.--. +--...|..++--+...
T Consensus 12 rli~QflKE~~L~rtl~tLQeEt--~VSLNTVDSvd~Fv-~dI~sG~WD~VL~~vqsLKLP~-kkL~dLYEqivlEliEL 87 (508)
T KOG0275|consen 12 RLIEQFLKENSLHRTLQTLQEET--NVSLNTVDSVDGFV-NDINSGHWDTVLKTVQSLKLPD-KKLIDLYEQIVLELIEL 87 (508)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--ccceeechhHHHHH-HhcccCchHHHHHHHHhccCch-hHHHHHHHHHHHHHHHH
Confidence 35556666666666666665422 2222211 111111 1234677777777665543100 11234566666666667
Q ss_pred CCHHHHHHHHHH-----HHHhCCchhHHHHHHHHHHhCCCCCCCCCCCcc
Q 015673 356 KKIKEAKGVIRT-----IKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQK 400 (403)
Q Consensus 356 g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 400 (403)
.....|..++++ |.+...|+-.-....|+...-..+...+|+..|
T Consensus 88 REL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssK 137 (508)
T KOG0275|consen 88 RELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSK 137 (508)
T ss_pred HhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchH
Confidence 777777777765 234455665555666665555555566666544
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.82 E-value=1.1e+02 Score=29.22 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=21.8
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESV 334 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (403)
......++..|.+.|-.+.|..+.+.+-..-. ...-|..-+..+.+.|+...+..+...+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445556666666666666666655443211 12234444455555555555444444333
No 397
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=64 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=14.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 015673 214 YKQGNAEEAERLWSEMEKKGVD 235 (403)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~ 235 (403)
+..+++.+|+.+|+++....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4556777777777776665443
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.66 E-value=23 Score=28.00 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=17.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 200 EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
.|+..+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555443
No 399
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.62 E-value=98 Score=30.21 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=55.0
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKIT---QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
++.+.+.+.+++|.++-+... +..+ .......+|..+.-.|++++|-...-.|.. -+...|......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 555666666666666665544 2222 233455566666666777777666666655 3555666666666665
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
++......+ +... ....+...|..++-.+..
T Consensus 437 ~~l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCC-CcccCchHHHHHHHHHHH
Confidence 554433222 2211 111344556666665554
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.60 E-value=70 Score=31.69 Aligned_cols=177 Identities=10% Similarity=0.075 Sum_probs=107.9
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
+.++++.+.+.+...--| ..+|.-+.+.|-.+-|+...+.-. .-...+...|+.+.|+
T Consensus 606 ~k~ydeVl~lI~ns~LvG----------qaiIaYLqKkgypeiAL~FVkD~~------------tRF~LaLe~gnle~al 663 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG----------QAIIAYLQKKGYPEIALHFVKDER------------TRFELALECGNLEVAL 663 (1202)
T ss_pred hhhhHHHHHHHHhcCccc----------HHHHHHHHhcCCcceeeeeecCcc------------hheeeehhcCCHHHHH
Confidence 346666666544432222 234444556666666665543322 1123345789999988
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK 197 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (403)
+.-..+ -+..+|..|.....+.|+.+-|+..|++... |..|--.|.-.|+.++-.++.+....+
T Consensus 664 e~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r 727 (1202)
T KOG0292|consen 664 EAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIR 727 (1202)
T ss_pred HHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhh
Confidence 776555 4778899999999999999999999888742 455555667778888777766655443
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC
Q 015673 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA 266 (403)
Q Consensus 198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~ 266 (403)
+ |.. .....-.-.|+.++-.+++...-.. + . ..+.+..+|.-+.|.++.++....
T Consensus 728 ~---D~~---~~~qnalYl~dv~ervkIl~n~g~~----~-l---aylta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 728 N---DAT---GQFQNALYLGDVKERVKILENGGQL----P-L---AYLTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred h---hhH---HHHHHHHHhccHHHHHHHHHhcCcc----c-H---HHHHHhhcCcHHHHHHHHHhhccc
Confidence 1 211 1112222467777777777654321 1 1 122333678888888888887653
No 401
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.50 E-value=47 Score=24.80 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCcHHHHHHH
Q 015673 65 QDLTVRRLAKSKRFSDIETLIESHKND-----PKITQEPYLCNLIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNAL 138 (403)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (403)
.+.++.-.+..+++.-.+.+++.+..- ....+...|..++.+.++..- --.+..+|+-+.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 355565556666666666666665311 012233345666666655444 33455566666665666666666666
Q ss_pred HHHHHhc
Q 015673 139 LFACTRS 145 (403)
Q Consensus 139 l~~~~~~ 145 (403)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6666554
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.15 E-value=47 Score=24.85 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=22.5
Q ss_pred HHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673 260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (403)
.+.+.+.|++++.. -..++..+.+.++.-.|..+++.+.+.+...+..
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 34444455544332 2234444444544455556665555554333333
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.68 E-value=67 Score=26.25 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHH--hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 100 LCNLIRSY--GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 100 ~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
|..+++++ ...+++++|.+.+..- .+.|+ -...++.++...|+.+.|+.+++... ....+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 44455554 4456777777776332 11122 12347777777899999999988873 222233333333434
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC
Q 015673 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG 217 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 217 (403)
...+.+.+|..+-+...+. . ....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~-~--~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE-L--RRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh-h--hHHHHHHHHHHHHHHh
Confidence 5668888888877766542 1 1346666666666443
No 404
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.32 E-value=33 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=17.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.+.....+.|++++|.+.|..+...+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 35555666777777777777776543
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.11 E-value=15 Score=31.02 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP 129 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 129 (403)
...|+..|....+.||+++|+.++++..+.|..
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345778999999999999999999999988876
No 406
>PRK09687 putative lyase; Provisional
Probab=66.11 E-value=83 Score=26.75 Aligned_cols=135 Identities=13% Similarity=-0.004 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCC-ChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 015673 202 TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGG-DPERLKELIDEMRDAGLKPDTISYNFLM 279 (403)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 279 (403)
+..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++ ..+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444455555555554 3344444444442 2222333333333 211 23344444444443 23444555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
.++.+.++ ..|...+-...+.+ + .....+.++...|.. +|+..+..+.+.. +|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 66666665 34454444444432 2 123455566666663 5666666665432 3555554444444
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.48 E-value=85 Score=26.67 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHc-------------------CCCCch
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM-------EKK-------------------GVDLDV 238 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~-------------------~~~~~~ 238 (403)
.+|+++|.-+.++.- ...+-.-++..+....+..+|...+... +.. ++.-|.
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 678999988877632 2344556778888888888887766543 210 123455
Q ss_pred HHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCCh-----------------hcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 239 AAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDT-----------------ISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 239 ~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
.-|-..+... ....++++.+++...... .-|+. .+++...+.|..+|.+.+|.++.+..+
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566666665 334556666666555332 22221 123455667888899999999888888
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
..+ +.+...+-.++..+...|+--.+.+.++++.+
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 775 66777888888888888888888887777643
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.43 E-value=1.1e+02 Score=27.58 Aligned_cols=61 Identities=28% Similarity=0.300 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--C----C-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENK--G----V-EVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (403)
+...+++.++-.||+..|+++++.+.-. + + .-...++-.+.-+|...+++.+|.++|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999998766321 1 1 1234566677778889999999999998764
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.37 E-value=1e+02 Score=27.32 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHH
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRD 265 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~ 265 (403)
+..+.+.|.+..|+++.+-+...+..-|+......|..+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 556778888888888888888876665777777777777 78888888888877654
No 410
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=80 Score=25.96 Aligned_cols=116 Identities=10% Similarity=-0.022 Sum_probs=64.5
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCcCcHH
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV-ISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~ 152 (403)
...+++.|+..|.+... ..|.....|..-+.++.+..+++.+..--.+.++.. |+. .....+.........+++|+
T Consensus 22 ~~k~y~~ai~~y~raI~-~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC-INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHh-cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccccHHH
Confidence 34566777776666652 233334556777777888888888777666666633 443 33444555566677778887
Q ss_pred HHHHHchh---hCCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 015673 153 ILFDEIPK---KYNLSPDKISYGLLLKSHCDSGSSDKALELLN 192 (403)
Q Consensus 153 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (403)
..+.+... ...+++.......|..+--+.=...+..++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 77776522 11233334444555444333333333444333
No 411
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.14 E-value=1.5e+02 Score=28.97 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=92.2
Q ss_pred cchHHHHHHHhhcCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHhcCCcCcHHHHH
Q 015673 78 FSDIETLIESHKNDPKITQEPYL-CNLIRSYGQAGMFDHAMRTFDQMD-ELGTPRSVISFNALLFACTRSRLYDKVPILF 155 (403)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 155 (403)
+.+.+...+.+..+...|....- ..+-..|...|++++|+..--..- ...+.++...+..++.-|... -.+.+.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHh
Confidence 34445555555544444433322 234467888999999988654442 344566777777777665543 112233333
Q ss_pred HHchhhCCCCCch-HHHHHHHHHHHhcCChHHHHHH---------HHHH-HhCCCCCchhhHHHHHHHHHhcCC-HHHHH
Q 015673 156 DEIPKKYNLSPDK-ISYGLLLKSHCDSGSSDKALEL---------LNEM-ENKGVEVTTVTYTTVLNCLYKQGN-AEEAE 223 (403)
Q Consensus 156 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~---------~~~~-~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 223 (403)
+.-.+..++.+.. ...+.++..|...+++..|+-+ +++. .+... +....+.++..+....+ .+--.
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~ 195 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRN 195 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHH
Confidence 3221111222221 2345556666666665554433 3332 11111 22234444444443333 33344
Q ss_pred HHHHHHHHc---CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 224 RLWSEMEKK---GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 224 ~~~~~~~~~---~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
++++.+.+. ...||. -.+..++ ...+.+.+.++++++.+.
T Consensus 196 ~vlr~lv~~y~~~~~PDy---~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 196 KVLRLLVKTYLKLPSPDY---FSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHccCCCCCe---eeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 444444432 234443 3344455 789999999999999874
No 412
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.96 E-value=14 Score=23.12 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK 354 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (403)
|....++.++..++...-.++++..+.++.+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455566666666666666666666666665 3455555555555544
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.30 E-value=27 Score=20.15 Aligned_cols=35 Identities=3% Similarity=-0.094 Sum_probs=25.0
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 316 HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
...+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34456777778888888888887777777766554
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.51 E-value=17 Score=30.70 Aligned_cols=41 Identities=34% Similarity=0.431 Sum_probs=29.0
Q ss_pred CCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhh
Q 015673 165 SPDKIS-YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT 205 (403)
Q Consensus 165 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 205 (403)
.||..+ |+..|....+.||+++|++++++.++.|..--..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 344444 56788888888888888888888888877533333
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.50 E-value=46 Score=22.53 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=9.9
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 015673 281 CYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~~ 299 (403)
.....|+.++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555544
No 416
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.42 E-value=85 Score=25.64 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=67.2
Q ss_pred cCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673 232 KGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR 311 (403)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (403)
.++++.-..+...+..+..++++.|.+.+-.- .+.| ..-..++.++...|+.+.|+.+++...-. ..+.....
T Consensus 73 f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~ 145 (226)
T PF13934_consen 73 FGIPPKYIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALT 145 (226)
T ss_pred hCCCHHHHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHH
Confidence 34555555555555555678888888877322 1122 22335778888889999999888875532 12223333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
.++.. ..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 33334 66688889988776654321 1346666666666443
No 417
>PRK10941 hypothetical protein; Provisional
Probab=62.31 E-value=96 Score=26.17 Aligned_cols=56 Identities=7% Similarity=-0.098 Sum_probs=27.3
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34455555555555555555433 333333433444455555555555555555443
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.75 E-value=47 Score=22.46 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=28.6
Q ss_pred HhcCChHHHHHHHHHHH----hCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 179 CDSGSSDKALELLNEME----NKGVEVT----TVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.+.|++..|.+.+.+.. ..+.... ......+...+...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677777755554443 2222110 12222344556667777777777777654
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.51 E-value=41 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=17.6
Q ss_pred HHHhhhhccCChHHHHHHHHHhhh
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSK 53 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~ 53 (403)
.+++.+...|++.+|+.-|+.=..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456788888888888887766543
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.00 E-value=93 Score=25.62 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHC
Q 015673 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~ 266 (403)
..++..+-+.|+++++...+.++...+...+..--+.+-.++ .-|..-.+++++..+...
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 346677889999999999999999998888887778877777 456667777777766543
No 421
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.74 E-value=1.8e+02 Score=28.83 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred hHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh
Q 015673 238 VAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDT 272 (403)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (403)
......++..++.+|++.|...+..|.+.|..|..
T Consensus 259 yd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~ 293 (725)
T PRK13341 259 FDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRF 293 (725)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 33444445555566666666666666666655543
No 422
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.68 E-value=1.8e+02 Score=28.82 Aligned_cols=151 Identities=11% Similarity=-0.028 Sum_probs=78.8
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHhhhcCCChHHHHHHHHHHH---HCCCCCCh
Q 015673 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD--LDVAAYNVRITNTYGGDPERLKELIDEMR---DAGLKPDT 272 (403)
Q Consensus 198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~a~~~~~~~~---~~~~~~~~ 272 (403)
++..+......++... .|+..+++.+++.+...... .+... =..+.+.+.+.... ...-.+..
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~----------It~~~~~e~l~~~~~~ydk~gd~hy 259 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID----------ITLAIAEESIQQRAVLYDKEGDAHF 259 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee----------ccHHHHHHHHHHhhhhcccCCCCCH
Confidence 3445666666666543 78888888888876532100 00000 01122233333211 11112233
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhCCCCCCHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN-----FDKAYKVFKESVMVHKIPDFNTVKL 347 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (403)
.+...++..+ +.+|++.|+.++..|.+.|..|....-..++.+.-.-|. ..-|...++-....|++--......
T Consensus 260 d~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq 338 (725)
T PRK13341 260 DTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQ 338 (725)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHH
Confidence 3344444433 568999999999999999977765555555545544453 2234444555555576544444444
Q ss_pred HHHHHHhcCCHHHH
Q 015673 348 LVEGLVKKKKIKEA 361 (403)
Q Consensus 348 l~~~~~~~g~~~~a 361 (403)
..-.++.+-+-..+
T Consensus 339 ~~~~la~apKSns~ 352 (725)
T PRK13341 339 AALYLATAPKSNSV 352 (725)
T ss_pred HHHHHHcCCCccHH
Confidence 44445544444444
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.67 E-value=12 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC
Q 015673 251 GDPERLKELIDEMRDAGLKPD 271 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~ 271 (403)
|.-..|..+|+.|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334444555555555554444
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.58 E-value=1e+02 Score=25.88 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (403)
++.....+...|.+.|++.+|...|-.- ..++...+..++......|...+ ++...-..++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e--------------~dlfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSE--------------ADLFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS----------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcc--------------hhHHHHHHHHH
Confidence 5566677777777777777766555321 11122222122222222222221 23333344444
Q ss_pred hhcCCChHHHHHHHHHHHHC
Q 015673 247 NTYGGDPERLKELIDEMRDA 266 (403)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~ 266 (403)
.+..++...|...+....+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 44667777777766665543
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.17 E-value=1.1e+02 Score=26.38 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNAT---TFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
|.-+..+.|+..+|.+.|+.+.+. .|-.. +...++.++....-+.+...++-+.-+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444678888888888876654 23222 34456777777766666666665554433
No 426
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.70 E-value=1e+02 Score=25.76 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=83.4
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHh---CCCC--CcHHHHHHHHHHHHhc
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEP---YLCNLIRSYGQAGMFDHAMRTFDQMDE---LGTP--RSVISFNALLFACTRS 145 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~--~~~~~~~~ll~~~~~~ 145 (403)
+....++|+.-|+++..-....... .+..++....+.+++++.+..|.++.. ..+. -+..+.|+++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3446666777777665433322222 234467777777777777777766532 1121 2345566666655555
Q ss_pred CCcCcHHHHHHHchhhCCCCCch----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----------CchhhHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDK----ISYGLLLKSHCDSGSSDKALELLNEMENKGVE-----------VTTVTYTTVL 210 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ll 210 (403)
.+.+....+|+.-.+...-..|. .|-..+...|...+.+.+..+++.++.+.... .-...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 55444444433322111111111 22245566666667777766666666432110 0134566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015673 211 NCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~ 231 (403)
+.|....+-.+...++++...
T Consensus 199 QmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH
Confidence 777777776666666666543
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.42 E-value=57 Score=25.47 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=25.3
Q ss_pred chHHHHHHHhhcCCCCCCHH--H-----HHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673 79 SDIETLIESHKNDPKITQEP--Y-----LCNLIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
+.|+.+|+.+.+.-..+... . -...+-.|.+.|.+++|.+++++..+
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 44666777666433332111 0 12234456667777777777776655
No 428
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.12 E-value=50 Score=22.66 Aligned_cols=49 Identities=16% Similarity=-0.046 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.+.+++....+....+.....|.-.|.+.|+.+.|.+-|+.=+..+|.+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3445555554433334444456666777777777777776665555554
No 429
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=58.99 E-value=40 Score=30.42 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C----CchHHHHHHHhhh----
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-----D----LDVAAYNVRITNT---- 248 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~----~~~~~~~~ll~~~---- 248 (403)
+.+++-.+.++.+.+.|. +| ....-+..|.+.++++.|.+.+.+-.+.|. - .....+..++.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~-~d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEGA-AD--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcCC-CC--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Confidence 456777777777777653 22 223446777888888888877777643321 1 1223344444433
Q ss_pred --cCCChHHHHHHHHHHHHCCCCC---ChhcHHHHHHHHHhcCChHHHHHHH---HH----HHHCCCCCCHHHHHHHHHH
Q 015673 249 --YGGDPERLKELIDEMRDAGLKP---DTISYNFLMTCYCKNEMMDEAKKVY---EG----LEENGCSPNATTFRTWIYH 316 (403)
Q Consensus 249 --~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~---~~----~~~~~~~~~~~~~~~l~~~ 316 (403)
++ ....+..+++.+...|+.- ...+|+. -|.+.-.+++++.-| ++ ..+.|++.+..++..+...
T Consensus 102 qvRh-Gt~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~ 177 (428)
T cd00245 102 QVRH-GTPDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGT 177 (428)
T ss_pred eecc-CCccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccC
Confidence 22 2344556666666655432 1233332 233333455555555 22 2366777676666553312
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCH
Q 015673 317 LCGSGNFDKAYKVFKESVMVHKIPDF 342 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (403)
++ -.-+..|+.+++.+...+...+.
T Consensus 178 l~-pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 178 LV-PPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred cC-CcHHHHHHHHHHHHHHccCCCCE
Confidence 21 22345677777777766544443
No 430
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.91 E-value=86 Score=28.78 Aligned_cols=109 Identities=11% Similarity=-0.087 Sum_probs=68.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhcC---CCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHh-------CCCCCcH-
Q 015673 69 VRRLAKSKRFSDIETLIESHKND---PKITQ-----EPYLCNLIRSYGQAGMFDHAMRTFDQMDE-------LGTPRSV- 132 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~- 132 (403)
.+.+.-.|++..|.+++...--. +...+ -.+||.|.-.+.+.|.+..+..+|..... .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34455678999998887765321 21112 22357777777788888877777776653 3444321
Q ss_pred ----------HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 133 ----------ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 133 ----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
.+|| ..-.|...|+.-.|.+.|.+..+ -+..++..|-.|..+|..
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 1222 22346677888888888888876 345577778888887763
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.63 E-value=1.3e+02 Score=28.87 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=47.3
Q ss_pred HHHhhh-cCCChHHHHHHHHHHHHCC--CCCChhcHHHHHHHHHhcCChHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 015673 243 VRITNT-YGGDPERLKELIDEMRDAG--LKPDTISYNFLMTCYCKNEMMDE------AKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 243 ~ll~~~-~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
.++.+| ..|++.++..+++.+.... -+.-...+|..++...+.|.++- |...++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 667777 8888888888888876542 12224467777777788886542 333333333 45577788777
Q ss_pred HHHHHc
Q 015673 314 IYHLCG 319 (403)
Q Consensus 314 ~~~~~~ 319 (403)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765554
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.52 E-value=1.2e+02 Score=26.04 Aligned_cols=71 Identities=14% Similarity=0.426 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----------cCChHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----------SGNFDKA 326 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 326 (403)
.++++.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+... +.-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356777777777777777777777777777777788888877742 2225555555543 3666666
Q ss_pred HHHHHH
Q 015673 327 YKVFKE 332 (403)
Q Consensus 327 ~~~~~~ 332 (403)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 665543
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.50 E-value=57 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
..++..+.+.++.-.|.++++.+.+.++..+..|-..-+..+...|-+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345566666666667777777777666665555555555666665543
No 434
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.36 E-value=1.2e+02 Score=25.85 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCC
Q 015673 290 EAKKVYEGLEENGCSPNATTFRTWIYHLCG----SGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 337 (403)
.|...+.++...+ +......+...|.. ..+..+|...|.+..+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555544 22233333333322 235566666666666555
No 435
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.32 E-value=37 Score=20.14 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=13.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
+..++.+.|++++|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444555666666666666666654
No 436
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.10 E-value=73 Score=23.49 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 304 SPNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
.++..+--.+..++.++.+ ..+.+.+++++.+..-+ ...+....|.-++.+.|+++.+.++++.+.+.-|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4555555566677776554 45667788887763212 2334445566778888888888888888877433
No 437
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.68 E-value=1.2e+02 Score=29.10 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCC------hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015673 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPD------TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT 312 (403)
Q Consensus 239 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (403)
..||..-..++..++..+.+.|..-... +..| ......|.-+|.+..+.|.|.+++++..+.+ +.++.+--.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 4455555555677888888888765433 1222 2235567778889999999999999999874 334555555
Q ss_pred HHHHHHccCChHHHHHHHHHHHh
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
+.......|..++|+........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 66777888888999888766544
No 438
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.66 E-value=1.9e+02 Score=28.24 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCc-HHHHHHHHHHHH
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKND-PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMD-ELGTPRS-VISFNALLFACT 143 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~-~~~~~~ll~~~~ 143 (403)
.+-..|...|++++|++.--..... ...++..++..++.-|... -.+++.+.++.-. ..++.+. ....+.++..|.
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl 142 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCL 142 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhh
Confidence 3456777889999988875554311 2233333344444333221 1233333333211 1111111 122344444444
Q ss_pred hcCCcCcHHH---------HHHHc-hhhCCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHHHhC---CCCCchhhHHHH
Q 015673 144 RSRLYDKVPI---------LFDEI-PKKYNLSPDKISYGLLLKSHCDSG-SSDKALELLNEMENK---GVEVTTVTYTTV 209 (403)
Q Consensus 144 ~~~~~~~a~~---------~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~~~~~l 209 (403)
..+++..++. ++++. .+. .. +....+.++..+.... +-+--.++++.+.+. ...|| |..+
T Consensus 143 ~d~e~~~aiGia~E~~rld~ie~Ail~~-d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~v 216 (929)
T KOG2062|consen 143 DDNEYKQAIGIAFETRRLDIIEEAILKS-DS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSV 216 (929)
T ss_pred hhhHHHHHHhHHhhhhhHHHHHHHhccc-cc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeee
Confidence 4444443332 33332 111 11 1223333333333322 234444555555432 23344 5567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
.++|.-..+.+.+.++++++.+. ......|.+....+
T Consensus 217 c~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~ 253 (929)
T KOG2062|consen 217 CQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLY 253 (929)
T ss_pred eeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHh
Confidence 88899999999999999999884 22333444444444
No 439
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.53 E-value=12 Score=32.04 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=82.2
Q ss_pred HHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCC
Q 015673 244 RITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGN 322 (403)
Q Consensus 244 ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 322 (403)
.+.++..|.++.|++.|....+.. ++....|..-.+++.+.+....|++-+...++. .||.. -|-.--.+-...|+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhc
Confidence 345557888999999998888774 445566666777888889999999888887765 44432 34333444556789
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 323 FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+++|...+....+.++.+....+ +-...-+.+..++-...+++.++
T Consensus 198 ~e~aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hHHHHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 99999999998887765554433 33344445555555555555443
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.27 E-value=1.5e+02 Score=30.97 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=71.0
Q ss_pred HHHhcCCcchHHH------HHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HhCCCCCcHHHHHH
Q 015673 71 RLAKSKRFSDIET------LIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM-------DELGTPRSVISFNA 137 (403)
Q Consensus 71 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~ 137 (403)
.....|.+.++.+ ++...-....+.....|..|...+-+.++.++|+..-... ...+-.-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344455555555 5554443444555566777888888888888887754432 22222223444555
Q ss_pred HHHHHHhcCCcCcHHHHHHHchhhCC------CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 138 LLFACTRSRLYDKVPILFDEIPKKYN------LSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 138 ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
+.-.+...++...|...+.......+ -||...+++.+-..+...++++.|.++++.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555556677777776666544322 233334444444444555777777777777654
No 441
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.98 E-value=63 Score=22.35 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=6.1
Q ss_pred cCCChHHHHHHHHH
Q 015673 249 YGGDPERLKELIDE 262 (403)
Q Consensus 249 ~~~~~~~a~~~~~~ 262 (403)
..|++++|..+.+.
T Consensus 51 NrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 51 NRGDYQSALQLGNK 64 (115)
T ss_pred ccchHHHHHHhcCC
Confidence 34444444444433
No 442
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.66 E-value=1.1e+02 Score=25.12 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=12.8
Q ss_pred HhcCChHHHHHHHHHHHHCCC
Q 015673 283 CKNEMMDEAKKVYEGLEENGC 303 (403)
Q Consensus 283 ~~~~~~~~A~~~~~~~~~~~~ 303 (403)
+..+++.+|+.+|+++....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777766665443
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.60 E-value=1.9e+02 Score=27.73 Aligned_cols=94 Identities=6% Similarity=-0.100 Sum_probs=39.5
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
..|..-+..+..+++.. ...++.++.+-.-.+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34544444444444332 44455554432234455566777778888877777777766544321 233455566667
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 015673 353 VKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~ 370 (403)
.++|+......+.+.+.+
T Consensus 449 ~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp H-----------------
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777776666666554
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.28 E-value=12 Score=27.28 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHHHHHHh-CCchhHHHHHHHHHHh
Q 015673 354 KKKKIKEAKGVIRTIKKK-FPPNVLRAWKKVEEEL 387 (403)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 387 (403)
+.|.-.+|..+|++|.++ .||| .|+.|+.+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd---dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD---DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc---cHHHHHHHh
Confidence 345555677778887764 4444 577777654
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.14 E-value=81 Score=26.97 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
++|+.+.++ ++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 444444433 5556555555444445555555566666666554
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.81 E-value=1.1e+02 Score=24.97 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 015673 355 KKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~ 372 (403)
.++...|..++++..+..
T Consensus 191 ~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 191 AETLQLALALLQRAFQLN 208 (230)
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 456677888888887643
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.53 E-value=64 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=13.1
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQ 122 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~ 122 (403)
++++|...|++..|++-|+.
T Consensus 16 i~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 55667777777777665554
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=55.23 E-value=48 Score=20.46 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=20.8
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH-----hccCCHHHHHHH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY-----GQAGMFDHAMRT 119 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~ 119 (403)
...|++=+|.++++.+-.....+....+..+|... .+.|+...|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555556666666654322222333444444332 244555555443
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.35 E-value=1.4e+02 Score=25.45 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH-
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMEN----KGVEVTTVTYTT-VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA- 240 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 240 (403)
....+..+...|++.++.+.+.++..+..+ .|.+.|....-+ |.-.|....-.++-++..+.|.+.|..-+...
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345566677777777777777776655433 344434322211 11122222334566666666776665433221
Q ss_pred HHHHHhhh--cCCChHHHHHHHHHHH
Q 015673 241 YNVRITNT--YGGDPERLKELIDEMR 264 (403)
Q Consensus 241 ~~~ll~~~--~~~~~~~a~~~~~~~~ 264 (403)
|...-..+ ...++.+|-.++.+..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11111111 3345566666665554
No 450
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.69 E-value=71 Score=21.96 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673 81 IETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
..+.++++...+....+.....|.-.|++.|+.+.|.+-|+.=+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 344555555444444444455566667777777777777765444
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.97 E-value=2.9e+02 Score=28.82 Aligned_cols=195 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCC
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGG 251 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~ 251 (403)
.+..+|...|..-+|+..|...... +.-............-+...+.+....-.... -...|...+..+ ..+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t------~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFSVADGKTPSEELT------ALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCchhcCCCCCchHH------HHHHHHHHHHHHHHhc
Q ss_pred ChHHHHHHHHHHHHC---CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH----
Q 015673 252 DPERLKELIDEMRDA---GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD---- 324 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 324 (403)
-.+.+.++-....+. ..+.-..+++.+.......|.+-+|...+-.-... .....+...++..++.+|..+
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhh
Q ss_pred --------HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673 325 --------KAYK-VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 325 --------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
+... +++..-..........|..|..-+...+++.+|-.+.-+.-.++..+.
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
No 452
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.60 E-value=68 Score=21.46 Aligned_cols=9 Identities=44% Similarity=0.460 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 015673 185 DKALELLNE 193 (403)
Q Consensus 185 ~~a~~~~~~ 193 (403)
+.|.+++..
T Consensus 53 ~~ar~LL~~ 61 (88)
T cd08819 53 SGARELLKR 61 (88)
T ss_pred HHHHHHHHH
Confidence 333333333
No 453
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.46 E-value=2.7e+02 Score=28.24 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=73.4
Q ss_pred CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-C--CcHHHHHHHHHHHHhcCCc--CcH
Q 015673 77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT-P--RSVISFNALLFACTRSRLY--DKV 151 (403)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~~ll~~~~~~~~~--~~a 151 (403)
.+++...++++.. -|..|+..|...|+.++|++++.+.....- . --...+..++.-+.+.+.. +-.
T Consensus 493 ~vee~e~~L~k~~---------~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li 563 (877)
T KOG2063|consen 493 DVEEIETVLKKSK---------KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLI 563 (877)
T ss_pred chHHHHHHHHhcc---------cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHH
Confidence 3455555555443 277899999999999999999988876321 1 0112233344444444433 333
Q ss_pred HHHHHHchhhC---CCC--C--ch---HHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 015673 152 PILFDEIPKKY---NLS--P--DK---ISY-GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 152 ~~~~~~~~~~~---~~~--~--~~---~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 215 (403)
+++-+...+.. |+. . |. .+. ...+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 564 ~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 564 LEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 33333333210 000 0 00 000 11233466777888999999998877666677777777777764
No 454
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.22 E-value=2.4e+02 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=15.3
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCC
Q 015673 241 YNVRITNTYGGDPERLKELIDEMRDAGLK 269 (403)
Q Consensus 241 ~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 269 (403)
...++.++..++...++.+++++...|+.
T Consensus 249 If~LldAL~~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 249 LYELLTGIINQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33444444445566666666666555543
No 455
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.44 E-value=47 Score=28.38 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=44.5
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT-WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLL 348 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (403)
|+..|...+..-.+.+.+.+.-.++.+..+.+ +.|...|-. --.-+...++++.+..+|.+.+..+ +.++..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHHH
Confidence 45555555554456667777777777777654 445555532 2223445677778888777776655 4445554433
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.40 E-value=1.4e+02 Score=24.53 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673 269 KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (403)
.|.+.....++..|.+ +++++|.+++.++.+.|+.|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 4566666666665543 467777777777777776654
No 457
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.03 E-value=1.8e+02 Score=25.52 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 289 DEAKKVYEGLEENGCSPNAT----TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
++...++..+++. -|+.. -|-+++......|.+++++.+|++++..|-.|-...-..+++.+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3455555555543 34432 34444455555566666666666666666555544444444443
No 458
>PRK12798 chemotaxis protein; Reviewed
Probab=49.76 E-value=2e+02 Score=25.99 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHC
Q 015673 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~ 266 (403)
.+++.+...+..++...--.-.-.-.-.|+..++.+.+..+.....++....+-.++.+. ...+...|+++|+...-.
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Q ss_pred --CCCCChhcHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 267 --GLKPDTISYNFLMTCYCKNEMMDE----AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 267 --~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
|--.......--+....+.|+.++ +.+++++...+ .--...+..+..++.+.++-..-..+..-+....-..
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S--~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHS--PYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER 255 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCchhHHHHHHHHHHhCCCCCCCCCCCcc
Q 015673 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVEEELGLVPAPAVGDGQK 400 (403)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 400 (403)
-...|..+.+.-.-.|+.+-|.-.-++... ....+....--.+.++.......++++..+
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~ 316 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALE 316 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHH
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.48 E-value=1.4e+02 Score=28.76 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHHHHHhccCCHH------HHHHHHHHHHhCCCCCcHHHHHHH
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLIRSYGQAGMFD------HAMRTFDQMDELGTPRSVISFNAL 138 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 138 (403)
.++.+|...|++..+.++++.....+ ...-...+|..|+.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888776432 2222345677777777777654 2333333333 33466777776
Q ss_pred HHHHHh
Q 015673 139 LFACTR 144 (403)
Q Consensus 139 l~~~~~ 144 (403)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 460
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=49.24 E-value=84 Score=26.06 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-------------C------------CCHH
Q 015673 289 DEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-------------I------------PDFN 343 (403)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~------------~~~~ 343 (403)
++|..+++.-... ..+..+...+.-++...|+...+.++++.+.+... . .+++
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vE 193 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVE 193 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHH
Confidence 3444444443222 34555554444555555666666666666543210 0 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 344 TVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+-...+-++.+.++.+.+..+.+-+.+
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333344556666888888888887765
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.67 E-value=52 Score=20.56 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=34.3
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673 269 KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (403)
.|....++.++..+++..-.+.++..+.+....| ..+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3455667778888887777888888888888777 4566666665555554
No 462
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.97 E-value=2.2e+02 Score=25.93 Aligned_cols=166 Identities=17% Similarity=0.069 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHH
Q 015673 185 DKALELLNEMENK---GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI 260 (403)
Q Consensus 185 ~~a~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~ 260 (403)
++...++...... ++ ..+......++..+ .|+...++.+++.+...+...+. +...+++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~---------------~~v~~~~ 216 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL---------------ELLEEAL 216 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH---------------HHHHHHH
Confidence 4455555544321 33 34445555554432 67888888777776543111111 1122222
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHH
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCK---NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN-----FDKAYKVFKE 332 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~ 332 (403)
...... ...+......++.++.+ ..+.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++-
T Consensus 217 ~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~ 295 (413)
T PRK13342 217 QKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADA 295 (413)
T ss_pred hhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Confidence 221111 11111223344555544 47889999999999998877765555555555444442 2234444555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 333 SVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
....|.+.........+-.++.+-+-..+...+++.
T Consensus 296 ~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 296 VERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 555576544444444444455554444444444444
No 463
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.17 E-value=2.5e+02 Score=26.44 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------------CCCchhhHHHHHHHHHh
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-------------VEVTTVTYTTVLNCLYK 215 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~ 215 (403)
++....+....+..|+..+......++... .|+...|..+++++...| -.++......++.++..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
|+.+.+..+++.+...|..|.......+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 464
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.68 E-value=2.1e+02 Score=25.43 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (403)
..-+|.-+++...... +.|...--.+++.|...|-.+.|...|..+.-+.+.-|.-
T Consensus 198 ~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL 253 (365)
T PF09797_consen 198 YLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTL 253 (365)
T ss_pred HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHh
Confidence 3445666777666653 3355555667788888888888888888765444443433
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.80 E-value=2e+02 Score=24.85 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCC----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHH
Q 015673 185 DKALELLNEMENKGV----EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKEL 259 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~ 259 (403)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++...-..++.++ ...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 455566666555311 233444444555555555554444444444332 2444445555555 55566666666
Q ss_pred HHHHHHC
Q 015673 260 IDEMRDA 266 (403)
Q Consensus 260 ~~~~~~~ 266 (403)
++.+...
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 6665553
No 466
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.60 E-value=1e+02 Score=21.72 Aligned_cols=27 Identities=11% Similarity=-0.137 Sum_probs=13.6
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHH
Q 015673 317 LCGSGNFDKAYKVFKESVMVHKIPDFNT 344 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (403)
+.++...++|+++++-|.+.| ..+...
T Consensus 71 lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 444555555555555555554 333333
No 467
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=45.50 E-value=3.3e+02 Score=27.28 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=38.3
Q ss_pred HHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCchhhHHHHHHHHHhcC
Q 015673 151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV-------------EVTTVTYTTVLNCLYKQG 217 (403)
Q Consensus 151 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~ll~~~~~~~ 217 (403)
..+.++.+.+..++.-+......+.+. ..|+...|+.+++.....+. ..+...+..++.++ ..+
T Consensus 183 Iv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~ 259 (830)
T PRK07003 183 IVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAG 259 (830)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcC
Confidence 334444444333554444444444433 34667777777665443211 01222233333322 335
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 015673 218 NAEEAERLWSEMEKKGVD 235 (403)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~ 235 (403)
+..+++.+++++...|..
T Consensus 260 d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 260 DGPEILAVADEMALRSLS 277 (830)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 666666666666655543
No 468
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.48 E-value=2.7e+02 Score=26.38 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=33.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHH-hcCChHHHHHHHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYC-KNEMMDEAKKVYEGLE 299 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~ 299 (403)
+.|.+..|.+.-+.+......-|+.....+|+.|+ +..++.--+++++...
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66777777777777776654445666666666665 5566666666666553
No 469
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=45.31 E-value=3.6e+02 Score=27.73 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHH-------HHHHHHhcC---CcchHHHHHHHhhcCCCCCCHHH
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDL-------TVRRLAKSK---RFSDIETLIESHKNDPKITQEPY 99 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~-------l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 99 (403)
.+-.++.....+++|+..|+++...- |. ....|.. ++.--...| .+++|+.-|+.+......| --
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 554 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF--PG-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAP--LE 554 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC--CC-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCc--hH
Confidence 34567778889999999999987655 32 2222222 122222333 4778888888887433333 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDEL 126 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 126 (403)
|..-.-.|.+.|++++-++.+....++
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444555688899999988887776554
No 470
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.15 E-value=3.7e+02 Score=27.76 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHh
Q 015673 67 LTVRRLAKSKRFSDIETLIESH 88 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~ 88 (403)
..++.+...+++.+|..+.++-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHh
Confidence 3455555666666666665543
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.08 E-value=93 Score=20.85 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015673 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA 361 (403)
Q Consensus 291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (403)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 34455555555532 22222222222224466666666666655 33 23455556666655554333
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.71 E-value=2.2e+02 Score=25.01 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHCCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673 253 PERLKELIDEMRDAGLKPDT----ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (403)
.++...++..+... -|+. ..|-++++.....|.++..+.+|++.+..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666654 4443 4567777777788888888888888888888887777666666554
No 473
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.63 E-value=2.4e+02 Score=25.47 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENK--GVEVT-TVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.--|++...-.|++....+.++.|.+. |..|. .+| -.+.-+|...|++.+|.++|-.++-
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777788888877777777553 33332 233 3456677788889999888877643
No 474
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.56 E-value=2.8e+02 Score=26.29 Aligned_cols=132 Identities=12% Similarity=-0.004 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH-------HhCCCCC-------------chhhHHHH---HHHHHhcCCHHHHHHH
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEM-------ENKGVEV-------------TTVTYTTV---LNCLYKQGNAEEAERL 225 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~-------------~~~~~~~l---l~~~~~~~~~~~a~~~ 225 (403)
.+.-.+...+...|+.+.|-.++++. ....+.| |...|-++ +..+.+.|.+..|.++
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 34445556677788877666655543 2222222 22333333 4556788999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHC---CCCCChhcHHHHHHHHHhcCC---hHHHHHHHHH
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDA---GLKPDTISYNFLMTCYCKNEM---MDEAKKVYEG 297 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 297 (403)
.+-+.+....-|+.....+|..+ +..+++-.+++++..... ..-||-..-.+|+..|..... ...|...+.+
T Consensus 365 cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 365 CKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 99988876665777777777777 888999888888877543 224554444456666665554 4556665555
Q ss_pred HHH
Q 015673 298 LEE 300 (403)
Q Consensus 298 ~~~ 300 (403)
+..
T Consensus 445 Al~ 447 (665)
T KOG2422|consen 445 ALK 447 (665)
T ss_pred HHH
Confidence 544
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.18 E-value=2.1e+02 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHhcCCHHH
Q 015673 202 TTVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~ 221 (403)
|+..|..+..+|...|+...
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHH
Confidence 44445555555544444333
No 476
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.45 E-value=1.1e+02 Score=21.41 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=17.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666666666666777766666655
No 477
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.11 E-value=3.2e+02 Score=26.47 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 015673 65 QDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR 144 (403)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 144 (403)
+..+++. .+.=+.++..++++++.... .....+..++++....|-.....-+.+.+....+. +...-..++....-
T Consensus 349 f~~Lv~~-lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~ 424 (618)
T PF01347_consen 349 FSRLVRL-LRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT-DDEAAQLLASLPFH 424 (618)
T ss_dssp HHHHHHH-HTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhh
Confidence 4444443 34455666777777776322 34555677777777777766666555555553332 33333333333322
Q ss_pred cCCc-CcHHHHHHHchhhCCCCCc-------hHHHHHHHHHHHhcC------------ChHHHHHHHHHHHhCC-CCCch
Q 015673 145 SRLY-DKVPILFDEIPKKYNLSPD-------KISYGLLLKSHCDSG------------SSDKALELLNEMENKG-VEVTT 203 (403)
Q Consensus 145 ~~~~-~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~-~~~~~ 203 (403)
.... .+.++.+..+.+......+ ..++..++.-+|... -.++..+.+....... -..|.
T Consensus 425 ~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 504 (618)
T PF01347_consen 425 VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE 504 (618)
T ss_dssp -----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H
T ss_pred cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH
Confidence 2122 2333333333321111111 234666776666662 1222223332222210 11244
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHHHHHC
Q 015673 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~~~~~ 266 (403)
..-...|.++...|... +...+..........+...-...+.++ .....+.+..++-.+...
T Consensus 505 ~~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 505 EEKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC
Confidence 55566777888887664 444444444433233344444445555 234566777777666543
No 478
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.79 E-value=3.1e+02 Score=26.27 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=109.8
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
....+..+++.+ +.=+.+...++++++.. .. ...+..++++....|-.....-+.+.+....+. +...-..+..
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence 444556666655 44556777788888763 11 556778889999999877777777766665543 3344444444
Q ss_pred HHHhc-CCcCcHHHHHHHchhhCCCCCch-------HHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCC-CCchhh
Q 015673 141 ACTRS-RLYDKVPILFDEIPKKYNLSPDK-------ISYGLLLKSHCDSGSS------DKALELLNEMENKGV-EVTTVT 205 (403)
Q Consensus 141 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~~ 205 (403)
+..-. .--.+.++.+..+.+....++.. .++..++.-+|..... ++..+.+........ .-|..-
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 33332 22344555555555543444443 5677888866655542 344444444332211 113333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cC--CChHHHHHHHHHHHHC
Q 015673 206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YG--GDPERLKELIDEMRDA 266 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~--~~~~~a~~~~~~~~~~ 266 (403)
-...|.+++..|..... ..+..........+...-...+.++ +. .....+..++-.+...
T Consensus 463 ~~~~LkaLGN~g~~~~i-~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 463 IQLYLKALGNAGHPSSI-KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred eeeHHHhhhccCChhHH-HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 45678888888876544 4444444322233444444555555 22 4666677666665543
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.43 E-value=59 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 015673 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFN 343 (403)
Q Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 343 (403)
...+.+|.+.|.+++.+..+.- +-....|-.+...--+.|+++.|.+.+++..+.+ ++|..
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-ccccc
Confidence 3456677788888888777652 3355667777777777888888888888877665 44433
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.34 E-value=1.4e+02 Score=22.12 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=34.5
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 249 YGGDPERLKELIDEMRDAGLKPD--TISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
...+..+.+.+++++.+.. .|+ ......|.-++.+.++++++.++.+.+.+.
T Consensus 47 ~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4456677777888777522 222 233444666777888888888888888776
No 481
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.94 E-value=2.7e+02 Score=25.32 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=51.9
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHccCChHHHHHHHHHHHhC
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH--------LCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~ 336 (403)
...+.||..+.|.+...++..-..+-...+|+-..+.+ .|-...+-.+|-. -.+...-++++++++.|-..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 44577888888888877777777777778888777765 3333333332211 12334566777777776544
Q ss_pred CCCCCHHHHHHHHHHHH
Q 015673 337 HKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 337 ~~~~~~~~~~~l~~~~~ 353 (403)
--..|+.-+..|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 22334444555555554
No 482
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.75 E-value=1.1e+02 Score=20.52 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
++|+-....|+..|...|..++......=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666777776666666555556666666666543
No 483
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.92 E-value=2.8e+02 Score=25.22 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHH--------HHhcCChHHHHHHHHHHHH
Q 015673 230 EKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTC--------YCKNEMMDEAKKVYEGLEE 300 (403)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~ 300 (403)
-...+.||..+.|.+-..+ ..-..+....+++-..+.+ .|-.+.+.+|+-. -.+...-+++.++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3446789999888887777 6677788888888887765 3433434333321 1233456788888888874
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 015673 301 NGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 301 ~~~~~~~~~~~~l~~~~~~ 319 (403)
.=-.-|..-+-.|.+.|+.
T Consensus 254 ~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred hcccccchhHHHHHHHHhh
Confidence 3223355566666666654
No 484
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.67 E-value=1.2e+02 Score=21.00 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=23.4
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 316 HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.+...|++++|..+.+.. ..||...|..| +-.+.|.-+++..-+.++..+..|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg~p~ 101 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASGDPR 101 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCCCHH
Confidence 344455555555544332 13444444322 2334444444444444444433333
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.83 E-value=1.5e+02 Score=21.60 Aligned_cols=43 Identities=14% Similarity=-0.050 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015673 324 DKAYKVFKESVMVHKIP-DFNTVKLLVEGLVKKKKIKEAKGVIR 366 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 366 (403)
++..++|..|.+.++-. ....|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777776543 33455666777777888888887775
No 486
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.10 E-value=1.2e+02 Score=20.30 Aligned_cols=43 Identities=5% Similarity=0.091 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
++|+-....|+..|+..|..+++.+.-+=-++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5566666667777777777777666666666666666666643
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.63 E-value=1.1e+02 Score=21.62 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD 324 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (403)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555556667777777777665566666555666666666544
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.43 E-value=58 Score=20.97 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=10.7
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC
Q 015673 249 YGGDPERLKELIDEMRDAGLKPD 271 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~ 271 (403)
..++.+.+.+++++..+.|..|.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~ 35 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPE 35 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTT
T ss_pred HhCCHHHHHHHHHHHHHcCCCHH
Confidence 44455555555555554444443
No 489
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.33 E-value=1.1e+02 Score=19.97 Aligned_cols=29 Identities=7% Similarity=-0.149 Sum_probs=15.9
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (403)
+.+.++.-.++|+++++-+.+.| ..++..
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 33555555666666666666655 444443
No 490
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.22 E-value=97 Score=19.10 Aligned_cols=14 Identities=36% Similarity=0.264 Sum_probs=5.4
Q ss_pred cCChHHHHHHHHHH
Q 015673 285 NEMMDEAKKVYEGL 298 (403)
Q Consensus 285 ~~~~~~A~~~~~~~ 298 (403)
.|++=+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444443
No 491
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=37.83 E-value=1.6e+02 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=10.5
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 015673 282 YCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~ 302 (403)
+...|+++.|+.+.+.++++|
T Consensus 58 ~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 58 LFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhcccCHHHHHHHHHHHHHcC
Confidence 344555555555555555444
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.74 E-value=1.9e+02 Score=22.32 Aligned_cols=67 Identities=7% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 289 DEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
+....+-+.+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 493
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.38 E-value=3.4e+02 Score=25.19 Aligned_cols=360 Identities=12% Similarity=0.044 Sum_probs=186.0
Q ss_pred HHHHHhhhhccC-ChHHHHHHHHHhhhccC-CCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH-
Q 015673 28 VSKAKSKLRSEF-DPDKALDIYSSVSKHYA-SPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI- 104 (403)
Q Consensus 28 ~~~l~~~l~~~~-~~~~A~~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 104 (403)
+..+...+.... .+..|..++++.++..- .|.-+-.....+++.+.-..++..|.+++.--.....+. ...|..++
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~-~~~ylr~~f 169 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI-CFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh-hhHHHHHHH
Confidence 344445555544 78888888888876541 122222223456677777789999998865433222222 22222221
Q ss_pred -----HHHhccCCH---HHHHHHHHHHHhCCCCCcHHH------HHHH--HHHHHhcCCcCcHHHHHHHchhhC--CC--
Q 015673 105 -----RSYGQAGMF---DHAMRTFDQMDELGTPRSVIS------FNAL--LFACTRSRLYDKVPILFDEIPKKY--NL-- 164 (403)
Q Consensus 105 -----~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~------~~~l--l~~~~~~~~~~~a~~~~~~~~~~~--~~-- 164 (403)
.......+. ..+.....+|.+. ..+|..- |... +.-|...|+...+...++++.+.- +.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 112222344 4444444555543 3334322 2222 223556788888877777664321 11
Q ss_pred ----------CCchHHHHHH-------------HHHHHhcCChHHHHHHHHHHHhC----CCCC-chhhH--------HH
Q 015673 165 ----------SPDKISYGLL-------------LKSHCDSGSSDKALELLNEMENK----GVEV-TTVTY--------TT 208 (403)
Q Consensus 165 ----------~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~--------~~ 208 (403)
.|....+.-+ ...-...|-+++|.++-+++... ...+ ....+ ..
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 1111111111 11111334556665555554321 1111 12222 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------hHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCChhcH--H
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKKG-VDLD-------VAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDTISY--N 276 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 276 (403)
++-+-.-.|++.+|++-...|.+.- -.|. ......++..+ .-+.++.|+.-|....+.--..|...+ .
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2223345799999999888887642 1233 12223344434 668899999988887654222233222 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--------HHHH--HHccCChHHHHHHHHHHHhCCCC-----CC
Q 015673 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT--------WIYH--LCGSGNFDKAYKVFKESVMVHKI-----PD 341 (403)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~~~-----~~ 341 (403)
.+...|.+.|+.+.-.++++.+- ++|..++.. ++.+ ....+++.+|..++.+-.+...- ..
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~ 484 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT 484 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence 45667888888776666666544 232222211 1222 24579999999999887664311 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCchhHH-----HHHHHHHHhCCCCCC
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK---KFPPNVLR-----AWKKVEEELGLVPAP 393 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-----~~~~l~~~~~~~~~~ 393 (403)
.-....|...+...|+..++.+..+-..+ +.+.-.+- .+.++..++|-.+..
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~ 544 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNE 544 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhh
Confidence 22334455667778999998887766543 34433333 445666666655443
No 494
>PRK09857 putative transposase; Provisional
Probab=37.32 E-value=2.7e+02 Score=23.92 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (403)
+.++.++-.++++.+.+. .+.......++..-+...|..++++++..+|...|+
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444444333 122222333334444444444444455555554443
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.26 E-value=87 Score=22.05 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD 149 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 149 (403)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 33444444555566666666666655556666555566666655443
No 496
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=37.15 E-value=3.8e+02 Score=25.62 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=68.8
Q ss_pred HHHHHCCCCCCHHHHH-----HHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 296 EGLEENGCSPNATTFR-----TWIYHLCGS-GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 296 ~~~~~~~~~~~~~~~~-----~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
.++...+++-+...|. .+++++.++ .+-..|.++..++.-.--.-|+..|+.++.-..+.+.++....++..+.
T Consensus 345 ~~Le~l~i~~t~~~F~~~~K~~Lik~Lwk~h~~~p~alrliA~Lcley~i~dpqlWn~iL~~l~~~~mi~~L~~lL~~is 424 (551)
T PF10493_consen 345 AELEELNIPYTIESFESCDKEGLIKSLWKNHSHNPQALRLIAELCLEYDIYDPQLWNGILQQLLGFNMISYLRKLLDAIS 424 (551)
T ss_pred HHHHhcCCCccHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444566666666664 377777665 4456788877665544335688999999999999999999999999876
Q ss_pred Hh----CCchhHHHHHHHHHHhCCCC
Q 015673 370 KK----FPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 370 ~~----~~~~~~~~~~~l~~~~~~~~ 391 (403)
.. .-|....+|..++...-...
T Consensus 425 ~~~~l~~i~~~~~aW~~vi~~Pf~~a 450 (551)
T PF10493_consen 425 SIPSLWQIPGFSMAWQRVIQAPFSSA 450 (551)
T ss_pred CChhhhcCccHHHHHHHHHHHHHHhC
Confidence 42 34567789999887764443
No 497
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=37.02 E-value=1.5e+02 Score=21.07 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=39.4
Q ss_pred HHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------------CCchhhHHHHHHHHHh
Q 015673 154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV------------------EVTTVTYTTVLNCLYK 215 (403)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~ll~~~~~ 215 (403)
.|..+...++-.|...+...+...+.- ....|..++.+|.+.|. .+-...+...+..+..
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~c--S~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~ 82 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFC--SRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLE 82 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCC--CHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHH
Confidence 344444444444455555555555432 23456677777766552 1112344455666667
Q ss_pred cCCHHHHHHHHH
Q 015673 216 QGNAEEAERLWS 227 (403)
Q Consensus 216 ~~~~~~a~~~~~ 227 (403)
.|+++.|.+++.
T Consensus 83 ~g~~~~a~~ll~ 94 (115)
T PF12793_consen 83 QGKYEQALQLLD 94 (115)
T ss_pred cCCHHHHHHHHH
Confidence 777777777665
No 498
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.89 E-value=1.5e+02 Score=20.84 Aligned_cols=26 Identities=15% Similarity=0.408 Sum_probs=20.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67788888888888888888887766
No 499
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.52 E-value=3.2e+02 Score=24.64 Aligned_cols=212 Identities=13% Similarity=0.014 Sum_probs=105.6
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhc
Q 015673 70 RRLAKSKRFSDIETLIESHKNDPKITQEPY--LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVI--SFNALLFACTRS 145 (403)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 145 (403)
...+..|+.+-+..+++. +..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 344567887766655543 33333221 2335555667787654 44555566555432 122345556677
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhh--HHHHHHHHHhcCCHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT--YTTVLNCLYKQGNAEEAE 223 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~ 223 (403)
|+.+.+..+++.-... ....+..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 79 g~~~~v~~Ll~~~~~~-~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 79 GDVKAVEELLDLGKFA-DDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCHHHHHHHHHcCCcc-cccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 8877666655433111 00011111 22333444566654 4455555666554321 123344555777776554
Q ss_pred HHHHHHHHcCCCC---chHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhc---HHHHHHHHHhcCChHHHHHHHHH
Q 015673 224 RLWSEMEKKGVDL---DVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTIS---YNFLMTCYCKNEMMDEAKKVYEG 297 (403)
Q Consensus 224 ~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~ 297 (403)
.++ +.|..+ +....+.+..+...|+.+ +++.+.+.|..++... ..+++...+..|+.+ +.+.
T Consensus 153 ~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 153 LLI----DHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HHH----hcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 444 444333 233334445455666654 4555666776665432 124444445566654 4455
Q ss_pred HHHCCCCCCH
Q 015673 298 LEENGCSPNA 307 (403)
Q Consensus 298 ~~~~~~~~~~ 307 (403)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 5667766664
No 500
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=36.45 E-value=4.1e+02 Score=25.82 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh-
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK- 284 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 284 (403)
....+.-.|+++.|++.+-. ......+.+.+.+.+..+ ...+... ..++..-.. + |...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~-~--~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPG-D--PPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCC-C--CCCcCHHHHHHHHHHH
Confidence 34556678899999888876 222345666666666555 1122211 111111111 1 112456777777774
Q ss_pred --cCChHHHHHHHHHHHHC
Q 015673 285 --NEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 285 --~~~~~~A~~~~~~~~~~ 301 (403)
..+..+|.++|--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45777888887766654
Done!