Query 015673
Match_columns 403
No_of_seqs 612 out of 1950
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 16:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-33 1E-37 262.4 33.5 355 21-388 196-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.9E-32 2.3E-36 253.1 37.5 359 23-391 82-564 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.2E-32 1.1E-36 245.7 23.7 203 116-319 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.4E-32 1.5E-36 244.8 23.4 206 79-285 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-29 2.5E-33 220.0 38.5 352 24-388 32-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-28 2.2E-32 213.9 39.8 350 31-393 5-355 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 9.6E-26 3.3E-30 203.9 35.7 362 19-394 20-442 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 8.8E-25 3E-29 197.6 34.8 328 43-384 10-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-23 3.9E-28 193.6 32.4 350 23-383 37-489 (514)
10 2gw1_A Mitochondrial precursor 99.9 5.9E-24 2E-28 195.4 29.8 356 26-392 7-464 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 7.1E-22 2.4E-26 172.8 36.4 330 25-387 3-350 (359)
12 3ieg_A DNAJ homolog subfamily 99.9 8.6E-22 2.9E-26 172.3 34.8 286 21-352 33-350 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4E-26 181.2 32.0 338 25-374 25-494 (537)
14 3hym_B Cell division cycle pro 99.9 4.4E-21 1.5E-25 165.8 30.0 284 96-387 21-314 (330)
15 3hym_B Cell division cycle pro 99.9 1.6E-20 5.6E-25 162.2 29.7 303 20-358 17-321 (330)
16 1fch_A Peroxisomal targeting s 99.9 1.1E-20 3.8E-25 165.9 25.4 312 38-369 14-357 (368)
17 3fp2_A TPR repeat-containing p 99.9 1.8E-18 6.1E-23 159.8 35.7 306 22-337 56-492 (537)
18 1fch_A Peroxisomal targeting s 99.9 4.1E-20 1.4E-24 162.3 23.3 293 34-332 34-355 (368)
19 4eqf_A PEX5-related protein; a 99.9 4.3E-20 1.5E-24 162.1 20.7 265 97-367 65-352 (365)
20 2xm6_A Protein corresponding t 99.8 2.2E-16 7.7E-21 144.0 41.8 320 24-370 38-431 (490)
21 4eqf_A PEX5-related protein; a 99.8 2.7E-19 9.2E-24 157.0 21.1 266 63-332 66-352 (365)
22 3cv0_A Peroxisome targeting si 99.8 5.1E-19 1.8E-23 152.6 22.5 261 103-370 27-314 (327)
23 3mkr_A Coatomer subunit epsilo 99.8 1.8E-18 6.3E-23 146.0 25.0 220 103-337 40-265 (291)
24 2xm6_A Protein corresponding t 99.8 4.3E-16 1.5E-20 142.1 42.5 300 42-371 24-360 (490)
25 3mkr_A Coatomer subunit epsilo 99.8 5.4E-18 1.9E-22 143.1 26.1 256 105-375 7-268 (291)
26 3cv0_A Peroxisome targeting si 99.8 8.8E-19 3E-23 151.1 21.7 279 24-333 20-312 (327)
27 4g1t_A Interferon-induced prot 99.8 2.5E-17 8.4E-22 149.7 31.9 341 24-370 50-458 (472)
28 2ooe_A Cleavage stimulation fa 99.8 6.7E-16 2.3E-20 142.2 36.0 357 24-391 12-477 (530)
29 3uq3_A Heat shock protein STI1 99.8 6.3E-17 2.2E-21 134.4 23.7 239 133-386 6-256 (258)
30 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.1E-20 139.0 34.4 343 22-374 43-495 (530)
31 1b89_A Protein (clathrin heavy 99.8 3.2E-18 1.1E-22 147.9 14.1 279 38-363 16-303 (449)
32 1b89_A Protein (clathrin heavy 99.8 4.5E-18 1.5E-22 147.0 12.6 272 73-388 14-293 (449)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2E-18 6.7E-23 161.2 8.3 118 98-216 128-249 (1134)
34 2pl2_A Hypothetical conserved 99.7 1.1E-16 3.9E-21 129.1 17.3 200 22-230 2-212 (217)
35 1xi4_A Clathrin heavy chain; a 99.7 2.5E-14 8.6E-19 138.1 35.5 319 21-391 981-1328(1630)
36 2pl2_A Hypothetical conserved 99.7 7.3E-16 2.5E-20 124.4 20.8 198 166-369 3-212 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-18 1.8E-22 158.3 9.1 119 201-319 125-248 (1134)
38 3uq3_A Heat shock protein STI1 99.7 1E-15 3.4E-20 127.1 21.7 223 99-336 7-236 (258)
39 3u4t_A TPR repeat-containing p 99.7 1.6E-15 5.4E-20 127.1 22.2 246 100-385 6-263 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-15 3.7E-20 128.2 20.6 246 109-365 17-269 (275)
41 2h6f_A Protein farnesyltransfe 99.7 5.9E-15 2E-19 128.7 25.3 249 98-388 98-364 (382)
42 3u4t_A TPR repeat-containing p 99.7 6.7E-15 2.3E-19 123.2 24.2 252 26-313 4-261 (272)
43 1ouv_A Conserved hypothetical 99.7 7.7E-14 2.6E-18 116.9 30.6 229 97-375 6-255 (273)
44 2ho1_A Type 4 fimbrial biogene 99.7 3.9E-15 1.3E-19 123.2 22.3 200 26-232 38-238 (252)
45 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-14 8.5E-19 118.3 26.7 202 170-375 39-242 (252)
46 2q7f_A YRRB protein; TPR, prot 99.7 2.6E-15 8.8E-20 123.5 20.1 209 169-383 24-233 (243)
47 2vq2_A PILW, putative fimbrial 99.7 3E-14 1E-18 115.4 26.2 205 167-375 7-215 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-16 7.5E-21 132.5 13.6 255 34-330 14-269 (275)
49 1ouv_A Conserved hypothetical 99.7 8.9E-14 3E-18 116.5 29.3 222 61-301 5-251 (273)
50 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-15 4.5E-20 125.2 17.6 205 21-233 19-223 (243)
51 2vq2_A PILW, putative fimbrial 99.7 1.1E-14 3.9E-19 118.0 22.1 202 25-232 8-211 (225)
52 2h6f_A Protein farnesyltransfe 99.7 1.7E-14 6E-19 125.8 24.0 167 61-232 96-269 (382)
53 4g1t_A Interferon-induced prot 99.7 1.8E-13 6.2E-18 124.2 31.5 304 61-370 50-400 (472)
54 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-14 7.4E-19 129.0 24.8 313 30-370 8-350 (452)
55 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.5E-18 133.2 31.1 310 28-391 1052-1369(1630)
56 4a1s_A PINS, partner of inscut 99.6 1.9E-14 6.5E-19 128.2 20.0 272 103-375 54-376 (411)
57 3sf4_A G-protein-signaling mod 99.6 4.1E-15 1.4E-19 132.1 15.2 316 25-358 9-363 (406)
58 3sf4_A G-protein-signaling mod 99.6 3E-14 1E-18 126.5 20.7 291 98-389 10-359 (406)
59 4a1s_A PINS, partner of inscut 99.6 3.5E-15 1.2E-19 132.9 14.3 279 27-337 50-373 (411)
60 2ond_A Cleavage stimulation fa 99.6 1.2E-12 4.2E-17 111.5 27.1 231 98-335 9-269 (308)
61 2ond_A Cleavage stimulation fa 99.6 4.8E-13 1.6E-17 114.1 24.5 218 42-266 33-270 (308)
62 3e4b_A ALGK; tetratricopeptide 99.6 4.1E-13 1.4E-17 120.7 25.0 323 25-375 35-391 (452)
63 3ro2_A PINS homolog, G-protein 99.6 4E-14 1.4E-18 122.1 17.6 123 249-371 195-332 (338)
64 3ulq_A Response regulator aspa 99.6 1.1E-13 3.9E-18 121.9 19.8 302 35-370 22-367 (383)
65 3ro2_A PINS homolog, G-protein 99.6 2.7E-14 9.3E-19 123.2 15.4 277 26-336 6-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 5.1E-13 1.7E-17 104.7 20.2 163 204-370 6-169 (184)
67 4abn_A Tetratricopeptide repea 99.6 5.4E-13 1.8E-17 120.7 22.5 213 148-368 84-318 (474)
68 3vtx_A MAMA; tetratricopeptide 99.6 3.5E-13 1.2E-17 105.6 17.9 165 63-232 6-170 (184)
69 3nf1_A KLC 1, kinesin light ch 99.6 1.5E-13 5.3E-18 117.2 17.1 251 15-266 17-307 (311)
70 3ulq_A Response regulator aspa 99.6 4.5E-13 1.5E-17 118.1 20.5 117 273-391 225-353 (383)
71 3nf1_A KLC 1, kinesin light ch 99.5 4.8E-14 1.6E-18 120.3 12.6 53 317-370 254-306 (311)
72 3q15_A PSP28, response regulat 99.5 1.5E-12 5.1E-17 114.5 21.7 316 23-370 8-364 (378)
73 4abn_A Tetratricopeptide repea 99.5 4.6E-13 1.6E-17 121.1 18.4 214 78-330 84-315 (474)
74 1hz4_A MALT regulatory protein 99.5 1.2E-11 4E-16 108.6 24.3 299 69-375 21-353 (373)
75 1hz4_A MALT regulatory protein 99.5 2.3E-11 7.9E-16 106.7 25.9 270 101-370 18-321 (373)
76 3q15_A PSP28, response regulat 99.5 1.3E-11 4.6E-16 108.4 22.7 215 174-391 107-350 (378)
77 3as5_A MAMA; tetratricopeptide 99.5 6E-12 2E-16 98.4 18.3 166 62-232 8-173 (186)
78 4e6h_A MRNA 3'-END-processing 99.5 5.7E-10 2E-14 103.9 33.8 360 23-392 64-556 (679)
79 4i17_A Hypothetical protein; T 99.5 2.2E-11 7.7E-16 98.8 21.4 207 166-385 5-222 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-12 8.3E-17 121.1 15.8 167 23-196 7-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 1.5E-11 5.3E-16 96.0 18.1 120 249-371 54-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 7.5E-12 2.6E-16 117.8 17.0 166 61-231 8-173 (723)
83 4i17_A Hypothetical protein; T 99.4 1.8E-11 6.3E-16 99.3 16.9 206 23-245 5-220 (228)
84 3edt_B KLC 2, kinesin light ch 99.4 4.8E-12 1.7E-16 106.2 12.8 228 37-266 13-281 (283)
85 3mv2_B Coatomer subunit epsilo 99.4 6E-10 2E-14 92.5 24.7 269 69-374 20-308 (310)
86 3mv2_B Coatomer subunit epsilo 99.4 1.4E-09 4.9E-14 90.2 26.5 79 116-196 85-164 (310)
87 4e6h_A MRNA 3'-END-processing 99.4 3.9E-09 1.3E-13 98.4 31.9 363 22-391 136-588 (679)
88 3edt_B KLC 2, kinesin light ch 99.3 3.1E-11 1.1E-15 101.2 16.1 159 73-231 12-197 (283)
89 3qky_A Outer membrane assembly 99.3 9E-11 3.1E-15 97.4 15.4 190 21-232 11-224 (261)
90 1qqe_A Vesicular transport pro 99.3 9.2E-10 3.2E-14 92.9 21.1 105 112-231 32-146 (292)
91 1qqe_A Vesicular transport pro 99.3 4.6E-10 1.6E-14 94.7 18.4 222 147-387 32-284 (292)
92 3urz_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 92.4 13.8 112 26-142 5-132 (208)
93 3dra_A Protein farnesyltransfe 99.2 2.2E-08 7.4E-13 84.0 26.7 236 113-386 49-302 (306)
94 2pzi_A Probable serine/threoni 99.2 2.4E-10 8.2E-15 108.0 16.2 155 73-232 402-563 (681)
95 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-10 4.1E-15 87.6 11.4 146 31-183 3-149 (150)
96 2fo7_A Synthetic consensus TPR 99.2 7.4E-10 2.5E-14 81.3 15.4 129 100-232 4-132 (136)
97 3qky_A Outer membrane assembly 99.2 9.5E-10 3.3E-14 91.2 17.5 97 100-197 18-126 (261)
98 2r5s_A Uncharacterized protein 99.2 2.3E-10 8E-15 88.7 12.8 162 27-194 8-170 (176)
99 2fo7_A Synthetic consensus TPR 99.2 1.7E-09 5.9E-14 79.3 16.8 120 249-371 13-132 (136)
100 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.5E-09 5.1E-14 87.8 16.2 186 25-233 4-214 (225)
101 2pzi_A Probable serine/threoni 99.2 1.2E-09 4.3E-14 103.2 17.5 173 179-357 402-583 (681)
102 3rjv_A Putative SEL1 repeat pr 99.1 8.1E-09 2.8E-13 82.5 19.2 177 42-233 3-198 (212)
103 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-08 1.5E-12 78.3 22.5 180 187-377 5-203 (212)
104 3qou_A Protein YBBN; thioredox 99.1 9.7E-10 3.3E-14 92.4 13.3 166 61-231 116-283 (287)
105 3urz_A Uncharacterized protein 99.1 1.1E-09 3.9E-14 87.3 13.0 91 68-160 10-116 (208)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.6E-08 5.3E-13 81.7 19.7 188 167-375 3-217 (225)
107 2r5s_A Uncharacterized protein 99.1 1.4E-09 4.7E-14 84.3 12.8 162 65-231 9-172 (176)
108 4gco_A Protein STI-1; structur 99.1 4.4E-09 1.5E-13 76.3 14.4 112 273-387 14-125 (126)
109 4ga2_A E3 SUMO-protein ligase 99.1 8.2E-10 2.8E-14 83.0 10.8 139 249-391 9-148 (150)
110 3qou_A Protein YBBN; thioredox 99.1 3.7E-09 1.3E-13 88.9 15.6 165 165-333 114-281 (287)
111 2vsy_A XCC0866; transferase, g 99.1 2.1E-09 7.2E-14 99.8 15.4 154 38-198 2-158 (568)
112 2vsy_A XCC0866; transferase, g 99.1 5.3E-09 1.8E-13 97.1 17.2 155 75-234 2-159 (568)
113 3dra_A Protein farnesyltransfe 99.1 1.4E-07 4.8E-12 79.1 23.7 179 32-218 39-235 (306)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 6.4E-09 2.2E-13 88.4 15.9 168 37-232 3-184 (307)
115 2uy1_A Cleavage stimulation fa 99.0 1.2E-06 4.3E-11 79.1 30.6 320 27-370 17-412 (493)
116 4f3v_A ESX-1 secretion system 99.0 7.3E-08 2.5E-12 79.0 18.2 194 32-233 14-238 (282)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3E-08 1E-12 79.2 15.9 124 103-232 12-150 (213)
118 3q7a_A Farnesyltransferase alp 98.9 8.3E-07 2.9E-11 75.2 24.3 240 107-386 64-346 (349)
119 3u3w_A Transcriptional activat 98.9 5.1E-07 1.7E-11 76.0 23.1 162 209-370 81-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.1E-07 3.7E-12 75.9 17.6 118 249-372 18-151 (213)
121 3gyz_A Chaperone protein IPGC; 98.9 3.3E-08 1.1E-12 73.8 12.9 102 272-375 36-137 (151)
122 2lni_A Stress-induced-phosphop 98.9 2.1E-08 7.1E-13 73.2 11.7 125 17-146 8-132 (133)
123 3u3w_A Transcriptional activat 98.9 4.8E-07 1.7E-11 76.2 21.5 166 139-334 82-264 (293)
124 4gco_A Protein STI-1; structur 98.9 1.8E-08 6E-13 73.0 10.5 109 25-138 13-121 (126)
125 2qfc_A PLCR protein; TPR, HTH, 98.9 3.9E-07 1.3E-11 76.7 20.4 165 66-230 79-264 (293)
126 2ifu_A Gamma-SNAP; membrane fu 98.9 4.1E-08 1.4E-12 83.4 14.2 168 27-195 38-222 (307)
127 3upv_A Heat shock protein STI1 98.8 9.1E-08 3.1E-12 69.2 13.3 113 272-386 4-121 (126)
128 1a17_A Serine/threonine protei 98.8 1.1E-07 3.7E-12 72.4 14.3 128 99-230 15-144 (166)
129 1na0_A Designed protein CTPR3; 98.8 1.6E-07 5.5E-12 67.4 14.4 112 272-386 9-120 (125)
130 2lni_A Stress-induced-phosphop 98.8 1.6E-07 5.5E-12 68.4 14.3 114 271-387 15-128 (133)
131 2e2e_A Formate-dependent nitri 98.8 5.3E-08 1.8E-12 75.3 12.1 124 249-375 22-148 (177)
132 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.9E-13 75.4 8.9 100 271-372 20-119 (148)
133 2vyi_A SGTA protein; chaperone 98.8 5.8E-08 2E-12 70.5 11.6 122 22-148 9-130 (131)
134 3q7a_A Farnesyltransferase alp 98.8 1.7E-06 5.8E-11 73.3 21.8 244 34-301 63-331 (349)
135 4f3v_A ESX-1 secretion system 98.8 1.3E-07 4.4E-12 77.5 14.4 198 180-385 18-249 (282)
136 1a17_A Serine/threonine protei 98.8 2.9E-07 1E-11 70.0 15.6 119 249-370 25-145 (166)
137 3gw4_A Uncharacterized protein 98.8 3.1E-08 1.1E-12 78.4 10.4 85 37-124 4-93 (203)
138 2c2l_A CHIP, carboxy terminus 98.8 1.1E-08 3.8E-13 85.6 7.9 195 24-231 3-198 (281)
139 1p5q_A FKBP52, FK506-binding p 98.8 7.8E-09 2.7E-13 88.9 7.0 129 99-230 149-292 (336)
140 1elw_A TPR1-domain of HOP; HOP 98.8 2.9E-07 1E-11 65.3 14.3 112 272-386 4-115 (118)
141 2qfc_A PLCR protein; TPR, HTH, 98.8 1.9E-06 6.6E-11 72.5 21.3 162 207-369 79-264 (293)
142 2c2l_A CHIP, carboxy terminus 98.8 2.3E-08 7.8E-13 83.7 9.2 97 97-196 4-100 (281)
143 2vgx_A Chaperone SYCD; alterna 98.8 3.1E-08 1.1E-12 74.0 9.0 91 67-159 26-116 (148)
144 1na0_A Designed protein CTPR3; 98.8 2.6E-07 9E-12 66.3 13.4 96 99-197 11-106 (125)
145 2uy1_A Cleavage stimulation fa 98.8 4.6E-06 1.6E-10 75.4 24.0 203 114-335 196-412 (493)
146 3gw4_A Uncharacterized protein 98.7 1.1E-07 3.7E-12 75.2 12.0 158 73-231 3-175 (203)
147 2vyi_A SGTA protein; chaperone 98.7 2.5E-07 8.4E-12 67.1 13.0 113 272-387 12-124 (131)
148 2e2e_A Formate-dependent nitri 98.7 6.1E-08 2.1E-12 74.9 10.2 123 33-160 18-143 (177)
149 2kck_A TPR repeat; tetratricop 98.7 2.3E-07 7.8E-12 65.2 12.1 103 271-375 5-110 (112)
150 3gyz_A Chaperone protein IPGC; 98.7 4.2E-08 1.4E-12 73.3 8.4 99 61-161 35-133 (151)
151 3q49_B STIP1 homology and U bo 98.7 3.8E-07 1.3E-11 66.9 13.6 100 270-371 7-106 (137)
152 2dba_A Smooth muscle cell asso 98.7 7.9E-07 2.7E-11 66.1 15.4 114 271-388 27-144 (148)
153 2xcb_A PCRH, regulatory protei 98.7 1.7E-07 5.9E-12 69.4 11.4 97 273-371 19-115 (142)
154 2fbn_A 70 kDa peptidylprolyl i 98.7 2.2E-08 7.6E-13 79.0 6.4 88 133-223 89-176 (198)
155 1p5q_A FKBP52, FK506-binding p 98.7 3.2E-07 1.1E-11 78.8 14.1 152 110-264 126-292 (336)
156 3dss_A Geranylgeranyl transfer 98.7 5.1E-05 1.7E-09 64.0 26.7 237 109-387 41-319 (331)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 6.4E-07 2.2E-11 68.1 13.3 98 272-371 11-108 (164)
158 2xcb_A PCRH, regulatory protei 98.6 2E-07 6.9E-12 69.0 9.8 23 102-124 57-79 (142)
159 3upv_A Heat shock protein STI1 98.6 3.2E-07 1.1E-11 66.3 10.6 99 25-127 4-102 (126)
160 1hxi_A PEX5, peroxisome target 98.6 4.2E-07 1.4E-11 65.1 10.9 98 274-373 19-116 (121)
161 3dss_A Geranylgeranyl transfer 98.6 1.4E-05 4.7E-10 67.5 21.6 119 37-160 41-173 (331)
162 2kck_A TPR repeat; tetratricop 98.6 5.7E-07 2E-11 63.1 11.3 101 24-128 5-108 (112)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 4.1E-08 1.4E-12 77.5 5.6 63 169-232 89-151 (198)
164 4b4t_Q 26S proteasome regulato 98.6 3.2E-06 1.1E-10 75.4 18.1 202 30-231 9-244 (434)
165 2xev_A YBGF; tetratricopeptide 98.6 2.4E-06 8.4E-11 61.7 13.9 99 275-375 5-109 (129)
166 1elw_A TPR1-domain of HOP; HOP 98.6 1.3E-06 4.5E-11 61.8 12.1 98 26-127 5-102 (118)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 8.8E-07 3E-11 67.3 11.6 102 22-127 8-109 (164)
168 4gcn_A Protein STI-1; structur 98.6 1.2E-06 4.1E-11 63.4 11.6 96 100-196 11-111 (127)
169 2dba_A Smooth muscle cell asso 98.5 2E-06 6.9E-11 63.8 13.0 114 22-139 25-140 (148)
170 4b4t_Q 26S proteasome regulato 98.5 1.5E-05 5E-10 71.1 20.4 195 176-370 12-244 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.5 2.5E-06 8.7E-11 61.6 12.8 100 273-373 5-110 (131)
172 4gcn_A Protein STI-1; structur 98.5 2E-06 6.8E-11 62.2 11.9 99 273-372 9-113 (127)
173 3rkv_A Putative peptidylprolyl 98.5 2.5E-06 8.5E-11 64.7 12.7 103 273-376 12-131 (162)
174 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.1E-11 63.2 11.3 98 96-196 8-105 (137)
175 1wao_1 Serine/threonine protei 98.5 2.2E-07 7.6E-12 83.8 7.2 126 26-156 7-134 (477)
176 1hxi_A PEX5, peroxisome target 98.5 6.9E-07 2.4E-11 64.0 8.2 98 26-127 18-115 (121)
177 3k9i_A BH0479 protein; putativ 98.4 4E-07 1.4E-11 64.8 6.3 87 38-125 3-89 (117)
178 1elr_A TPR2A-domain of HOP; HO 98.4 1.3E-06 4.6E-11 63.1 9.3 97 100-197 7-108 (131)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2E-07 6.8E-12 83.7 5.7 128 99-229 270-412 (457)
180 2xev_A YBGF; tetratricopeptide 98.4 6E-06 2.1E-10 59.6 12.4 97 28-127 5-106 (129)
181 3ro3_A PINS homolog, G-protein 98.4 1.8E-06 6.3E-11 65.0 9.7 133 99-231 11-157 (164)
182 3k9i_A BH0479 protein; putativ 98.4 6.2E-07 2.1E-11 63.8 6.1 88 285-373 3-92 (117)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8E-06 2.7E-10 73.3 12.9 152 109-263 246-412 (457)
184 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 76.4 9.8 115 249-366 18-134 (477)
185 2hr2_A Hypothetical protein; a 98.2 9.9E-06 3.4E-10 59.9 10.0 97 274-371 13-131 (159)
186 3ro3_A PINS homolog, G-protein 98.2 3.2E-06 1.1E-10 63.6 7.8 98 99-196 51-157 (164)
187 1ihg_A Cyclophilin 40; ppiase 98.2 9.5E-06 3.3E-10 70.5 11.6 96 99-196 225-335 (370)
188 1ihg_A Cyclophilin 40; ppiase 98.2 7.1E-06 2.4E-10 71.3 10.7 136 28-188 226-361 (370)
189 2if4_A ATFKBP42; FKBP-like, al 98.2 4.6E-06 1.6E-10 71.6 9.3 147 27-197 181-328 (338)
190 3rkv_A Putative peptidylprolyl 98.2 1E-05 3.5E-10 61.2 10.3 102 25-127 11-127 (162)
191 2l6j_A TPR repeat-containing p 98.2 1.1E-06 3.8E-11 61.6 4.1 92 272-365 4-101 (111)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 9.9E-06 3.4E-10 69.5 10.7 152 202-373 178-330 (338)
193 1dce_A Protein (RAB geranylger 98.2 7.5E-05 2.6E-09 68.7 16.6 179 35-221 38-244 (567)
194 1dce_A Protein (RAB geranylger 98.1 0.00022 7.6E-09 65.6 19.3 136 253-392 89-241 (567)
195 1klx_A Cysteine rich protein B 98.1 0.00013 4.5E-09 53.3 14.2 111 252-373 10-128 (138)
196 2hr2_A Hypothetical protein; a 98.1 1.6E-05 5.6E-10 58.8 8.7 107 26-159 12-129 (159)
197 1zu2_A Mitochondrial import re 98.0 2E-05 6.9E-10 58.2 7.8 95 285-382 15-130 (158)
198 2kat_A Uncharacterized protein 98.0 5.1E-05 1.8E-09 53.4 9.9 78 291-370 4-81 (115)
199 3n71_A Histone lysine methyltr 98.0 1.5E-05 5E-10 71.6 8.1 89 35-123 319-419 (490)
200 1na3_A Designed protein CTPR2; 98.0 9.7E-05 3.3E-09 49.2 10.2 61 309-370 11-71 (91)
201 2l6j_A TPR repeat-containing p 98.0 1.4E-05 4.9E-10 55.8 6.2 96 62-159 4-105 (111)
202 2kat_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 54.5 8.0 63 96-159 18-80 (115)
203 1klx_A Cysteine rich protein B 97.9 0.00047 1.6E-08 50.3 13.9 109 218-337 10-127 (138)
204 3n71_A Histone lysine methyltr 97.9 5.6E-05 1.9E-09 67.9 9.2 125 107-231 319-463 (490)
205 1na3_A Designed protein CTPR2; 97.8 0.00018 6E-09 47.9 9.7 84 271-356 8-91 (91)
206 3ma5_A Tetratricopeptide repea 97.8 5.2E-05 1.8E-09 51.9 6.5 62 97-159 7-68 (100)
207 1zu2_A Mitochondrial import re 97.7 5.1E-05 1.7E-09 56.0 5.9 101 34-140 11-132 (158)
208 3ma5_A Tetratricopeptide repea 97.7 0.00024 8.3E-09 48.4 8.7 62 307-369 7-68 (100)
209 2kc7_A BFR218_protein; tetratr 97.4 0.00089 3E-08 45.3 8.6 58 279-337 7-65 (99)
210 3ly7_A Transcriptional activat 97.4 0.0098 3.4E-07 50.5 16.0 147 93-244 190-349 (372)
211 2kc7_A BFR218_protein; tetratr 97.3 0.00035 1.2E-08 47.4 5.5 60 313-373 6-66 (99)
212 3bee_A Putative YFRE protein; 97.3 0.0025 8.5E-08 42.6 9.3 70 304-374 3-75 (93)
213 3qww_A SET and MYND domain-con 97.3 0.00061 2.1E-08 60.1 7.9 87 38-124 311-409 (433)
214 3ly7_A Transcriptional activat 97.3 0.0073 2.5E-07 51.3 13.9 68 304-373 274-341 (372)
215 1pc2_A Mitochondria fission pr 97.2 0.0034 1.1E-07 45.8 9.7 87 287-375 13-104 (152)
216 3qwp_A SET and MYND domain-con 97.1 0.0015 5E-08 57.8 8.4 59 100-158 332-397 (429)
217 3mkq_A Coatomer beta'-subunit; 97.1 0.012 4.1E-07 56.9 15.5 45 143-194 663-707 (814)
218 2v5f_A Prolyl 4-hydroxylase su 97.1 0.006 2E-07 41.7 9.6 62 274-335 7-74 (104)
219 3qwp_A SET and MYND domain-con 97.0 0.0044 1.5E-07 54.7 10.6 92 279-370 294-399 (429)
220 1wy6_A Hypothetical protein ST 97.0 0.023 8E-07 39.9 11.5 141 35-200 17-157 (172)
221 3qww_A SET and MYND domain-con 97.0 0.002 6.8E-08 56.9 7.8 87 284-370 310-410 (433)
222 3mkq_B Coatomer subunit alpha; 96.8 0.094 3.2E-06 39.3 15.7 101 106-228 14-114 (177)
223 3u64_A Protein TP_0956; tetrat 96.8 0.069 2.4E-06 43.6 14.7 68 168-235 199-272 (301)
224 3bee_A Putative YFRE protein; 96.8 0.016 5.5E-07 38.5 9.4 21 138-158 49-69 (93)
225 3mkq_A Coatomer beta'-subunit; 96.8 0.057 2E-06 52.1 17.1 99 108-231 610-709 (814)
226 1nzn_A CGI-135 protein, fissio 96.6 0.028 9.6E-07 39.4 9.9 94 280-375 9-107 (126)
227 2v5f_A Prolyl 4-hydroxylase su 96.6 0.029 9.8E-07 38.2 10.1 66 167-232 4-75 (104)
228 4h7y_A Dual specificity protei 96.5 0.054 1.9E-06 39.0 10.6 115 22-140 10-136 (161)
229 4ady_A RPN2, 26S proteasome re 96.1 1 3.5E-05 43.5 20.5 294 30-335 344-657 (963)
230 3lvg_A Clathrin heavy chain 1; 96.1 0.00068 2.3E-08 59.1 -0.7 246 24-292 53-324 (624)
231 1pc2_A Mitochondria fission pr 96.1 0.064 2.2E-06 39.1 9.7 31 202-232 31-64 (152)
232 3mkq_B Coatomer subunit alpha; 96.1 0.29 1E-05 36.6 14.2 44 74-123 17-60 (177)
233 4h7y_A Dual specificity protei 96.0 0.15 5E-06 36.8 10.7 65 182-248 74-138 (161)
234 1wy6_A Hypothetical protein ST 95.8 0.31 1.1E-05 34.4 13.1 66 168-234 91-156 (172)
235 3u64_A Protein TP_0956; tetrat 95.6 0.14 4.7E-06 41.9 10.4 108 253-370 179-297 (301)
236 3txn_A 26S proteasome regulato 95.4 1.2 4.1E-05 38.4 17.5 236 26-263 20-281 (394)
237 3lvg_A Clathrin heavy chain 1; 94.8 4E-06 1.4E-10 72.5 -18.6 262 63-368 55-317 (624)
238 4b4t_P 26S proteasome regulato 94.5 2.4 8.1E-05 37.5 17.6 49 76-124 30-83 (445)
239 4gns_B Protein CSD3, chitin bi 94.5 0.23 7.7E-06 46.9 10.1 128 101-229 252-397 (754)
240 4gns_B Protein CSD3, chitin bi 94.4 0.86 3E-05 43.0 13.8 129 28-159 251-398 (754)
241 4fhn_B Nucleoporin NUP120; pro 94.3 2.9 0.0001 42.1 18.3 146 67-232 817-967 (1139)
242 1nzn_A CGI-135 protein, fissio 94.3 0.22 7.4E-06 34.9 7.2 23 103-125 80-102 (126)
243 1qsa_A Protein (soluble lytic 93.8 4.1 0.00014 37.7 23.1 311 34-370 15-347 (618)
244 3ffl_A Anaphase-promoting comp 93.8 0.55 1.9E-05 34.6 8.9 65 25-89 20-90 (167)
245 4fhn_B Nucleoporin NUP120; pro 93.8 2 6.8E-05 43.3 16.0 168 30-221 817-989 (1139)
246 1v54_E Cytochrome C oxidase po 93.6 0.98 3.3E-05 29.9 10.2 54 322-375 25-78 (109)
247 2ff4_A Probable regulatory pro 93.6 0.61 2.1E-05 40.5 10.7 73 275-348 174-251 (388)
248 3o48_A Mitochondria fission 1 92.7 1.6 5.4E-05 30.8 9.5 72 304-375 37-111 (134)
249 2ff4_A Probable regulatory pro 92.6 2.9 9.8E-05 36.2 13.4 73 170-243 173-250 (388)
250 4b4t_P 26S proteasome regulato 92.4 5.4 0.00018 35.2 18.9 94 276-369 141-245 (445)
251 2y69_E Cytochrome C oxidase su 92.4 2 7E-05 30.2 10.2 54 322-375 68-121 (152)
252 1v54_E Cytochrome C oxidase po 90.9 2.4 8.2E-05 28.1 8.3 50 112-161 25-74 (109)
253 1y8m_A FIS1; mitochondria, unk 90.2 1.9 6.6E-05 30.8 7.9 67 61-127 38-107 (144)
254 3lpz_A GET4 (YOR164C homolog); 89.6 8.4 0.00029 32.3 19.6 168 64-264 37-214 (336)
255 3ffl_A Anaphase-promoting comp 89.4 2.5 8.5E-05 31.1 8.2 31 340-370 120-150 (167)
256 4b4t_R RPN7, 26S proteasome re 89.4 3.1 0.00011 36.6 10.6 123 41-163 110-239 (429)
257 2wpv_A GET4, UPF0363 protein Y 89.3 8.4 0.00029 32.0 17.1 64 163-226 87-157 (312)
258 4b4t_R RPN7, 26S proteasome re 88.7 4.9 0.00017 35.3 11.4 59 171-229 134-194 (429)
259 3o48_A Mitochondria fission 1 88.6 2.2 7.4E-05 30.1 7.1 24 278-301 84-107 (134)
260 4ady_A RPN2, 26S proteasome re 88.3 20 0.00067 35.0 28.1 295 66-370 343-657 (963)
261 1y8m_A FIS1; mitochondria, unk 88.3 5.5 0.00019 28.5 13.2 72 304-375 36-110 (144)
262 2wpv_A GET4, UPF0363 protein Y 88.2 10 0.00035 31.5 18.7 192 40-265 12-216 (312)
263 1zbp_A Hypothetical protein VP 87.7 5.9 0.0002 31.9 10.0 57 280-337 5-61 (273)
264 3txn_A 26S proteasome regulato 87.5 13 0.00046 32.0 21.6 27 98-124 20-46 (394)
265 2y69_E Cytochrome C oxidase su 87.4 5.9 0.0002 27.9 9.0 62 252-314 68-129 (152)
266 4b4t_S RPN3, 26S proteasome re 86.2 3 0.0001 37.3 8.3 66 132-197 231-299 (523)
267 1zbp_A Hypothetical protein VP 84.4 4.1 0.00014 32.8 7.5 56 71-127 6-61 (273)
268 1wdy_A 2-5A-dependent ribonucl 74.8 11 0.00036 30.4 7.6 22 250-271 192-213 (285)
269 3esl_A Checkpoint serine/threo 74.3 26 0.00089 26.8 8.7 71 236-306 75-149 (202)
270 3lpz_A GET4 (YOR164C homolog); 73.1 41 0.0014 28.2 18.3 165 170-370 37-215 (336)
271 4gq2_M Nucleoporin NUP120; bet 72.8 40 0.0014 33.2 12.1 48 134-182 899-950 (950)
272 2uwj_G Type III export protein 72.3 18 0.00063 23.9 6.6 8 320-327 52-59 (115)
273 2p58_C Putative type III secre 71.3 20 0.00067 23.8 7.6 8 285-292 53-60 (116)
274 3eiq_C Programmed cell death p 65.6 21 0.00072 30.3 7.3 76 275-351 220-297 (358)
275 4b4t_S RPN3, 26S proteasome re 63.6 84 0.0029 28.2 15.4 24 100-123 234-257 (523)
276 3bu8_A Telomeric repeat-bindin 62.2 52 0.0018 25.4 10.4 67 288-356 88-161 (235)
277 3esl_A Checkpoint serine/threo 59.9 56 0.0019 25.0 11.7 53 288-340 95-148 (202)
278 4a1g_A Mitotic checkpoint seri 58.9 49 0.0017 24.0 8.5 50 256-305 84-134 (152)
279 3hra_A Ankyrin repeat family p 55.4 19 0.00064 27.1 5.1 10 293-302 159-168 (201)
280 2uwj_G Type III export protein 54.4 44 0.0015 22.1 8.2 88 249-345 18-105 (115)
281 2ijq_A Hypothetical protein; s 54.3 58 0.002 23.8 7.0 52 74-125 44-103 (161)
282 2p58_C Putative type III secre 53.9 46 0.0016 22.1 8.9 85 285-377 20-104 (116)
283 2d2s_A Exocyst complex compone 52.0 85 0.0029 24.7 9.3 83 249-334 30-118 (235)
284 1k1a_A B-cell lymphoma 3-encod 50.5 38 0.0013 26.2 6.4 18 108-125 17-34 (241)
285 3bqo_A Telomeric repeat-bindin 50.5 42 0.0014 25.5 5.8 23 314-336 124-146 (211)
286 3gvo_A Pumilio 2, pumilio homo 50.4 70 0.0024 27.0 8.2 59 30-89 39-97 (351)
287 2d2s_A Exocyst complex compone 49.6 59 0.002 25.6 7.0 92 30-124 23-118 (235)
288 1wdy_A 2-5A-dependent ribonucl 49.2 23 0.00079 28.3 5.0 86 213-306 189-280 (285)
289 3ltm_A Alpha-REP4; protein eng 48.5 85 0.0029 23.7 17.3 162 66-248 37-198 (211)
290 2fe3_A Peroxide operon regulat 47.5 74 0.0025 22.6 7.9 37 320-356 34-70 (145)
291 4gq2_M Nucleoporin NUP120; bet 47.4 1.3E+02 0.0045 29.6 10.6 28 205-232 899-926 (950)
292 4g8k_A 2-5A-dependent ribonucl 47.0 86 0.003 25.9 8.4 104 224-342 220-329 (337)
293 2w57_A Ferric uptake regulatio 46.7 78 0.0027 22.7 7.3 34 288-321 33-66 (150)
294 2xig_A Ferric uptake regulatio 46.6 78 0.0027 22.7 7.1 40 317-356 36-75 (150)
295 3eyy_A Putative iron uptake re 46.2 76 0.0026 22.6 6.7 33 324-356 34-66 (145)
296 1mzb_A Ferric uptake regulatio 46.2 74 0.0025 22.3 7.5 35 287-321 33-67 (136)
297 3t8k_A Uncharacterized protein 45.5 83 0.0028 23.4 7.3 164 175-342 10-186 (186)
298 2r9g_A AAA ATPase, central reg 45.1 1E+02 0.0034 23.5 9.8 84 284-368 26-114 (204)
299 2f6m_A Suppressor protein STP2 44.8 42 0.0014 20.1 4.1 46 310-356 5-50 (65)
300 3hra_A Ankyrin repeat family p 43.4 31 0.0011 25.8 4.7 14 73-86 13-26 (201)
301 3pvs_A Replication-associated 43.2 1.7E+02 0.0059 25.7 13.9 167 183-367 166-355 (447)
302 2wvi_A Mitotic checkpoint seri 43.1 97 0.0033 22.8 8.4 51 116-167 79-130 (164)
303 2r9g_A AAA ATPase, central reg 43.0 1.1E+02 0.0037 23.3 10.2 18 216-233 27-44 (204)
304 2ion_A PDCD4, programmed cell 42.5 87 0.003 22.6 6.5 24 276-299 13-36 (152)
305 3bge_A Predicted ATPase; struc 42.1 1.1E+02 0.0038 23.2 8.4 54 284-337 19-77 (201)
306 4ets_A Ferric uptake regulatio 41.9 29 0.001 25.4 4.0 47 102-148 37-85 (162)
307 2b7e_A PRE-mRNA processing pro 41.8 28 0.00095 20.4 3.0 29 185-213 3-31 (59)
308 3bge_A Predicted ATPase; struc 40.4 1.2E+02 0.0041 23.1 8.4 31 215-245 19-49 (201)
309 3kae_A CDC27, possible protein 40.0 1.1E+02 0.0039 22.7 12.1 78 249-332 45-139 (242)
310 1ug3_A EIF4GI, eukaryotic prot 39.8 1.7E+02 0.0057 24.6 10.6 23 172-194 15-37 (339)
311 3eu9_A Huntingtin-interacting 39.6 26 0.00088 27.1 3.7 19 69-87 46-64 (240)
312 3kea_A K1L; tropism, ANK repea 39.2 1.2E+02 0.0042 24.3 7.9 22 241-262 162-183 (285)
313 2keb_A DNA polymerase subunit 38.8 81 0.0028 20.7 6.2 31 291-321 28-58 (101)
314 1ug3_A EIF4GI, eukaryotic prot 38.4 95 0.0032 26.1 7.1 145 135-297 14-166 (339)
315 2nsz_A Programmed cell death p 37.5 1E+02 0.0035 21.4 7.9 64 275-339 10-75 (129)
316 4ets_A Ferric uptake regulatio 37.5 1E+02 0.0036 22.4 6.4 70 41-113 13-85 (162)
317 2fu4_A Ferric uptake regulatio 37.2 74 0.0025 19.7 7.2 59 298-357 8-67 (83)
318 3ctd_A Putative ATPase, AAA fa 37.0 1.4E+02 0.0049 22.9 9.0 38 284-321 47-84 (213)
319 3eu9_A Huntingtin-interacting 36.9 47 0.0016 25.5 4.9 47 72-120 16-62 (240)
320 3c1d_A Protein ORAA, regulator 36.8 1.2E+02 0.0041 22.0 11.6 101 252-357 45-145 (159)
321 2ion_A PDCD4, programmed cell 36.1 1E+02 0.0035 22.2 6.0 23 67-89 14-36 (152)
322 3ubw_A 14-3-3E, 14-3-3 protein 36.0 1.7E+02 0.0057 23.5 9.3 45 324-368 173-225 (261)
323 3f3f_C Nucleoporin NUP85; stru 35.6 1.1E+02 0.0039 27.7 7.3 72 79-152 498-569 (570)
324 2rfa_A Transient receptor pote 35.3 1.5E+02 0.005 22.6 7.8 15 283-297 205-219 (232)
325 3eyy_A Putative iron uptake re 35.0 72 0.0025 22.7 5.1 45 103-148 24-68 (145)
326 3f3f_C Nucleoporin NUP85; stru 34.7 1.2E+02 0.0041 27.6 7.3 77 109-188 493-569 (570)
327 3ctd_A Putative ATPase, AAA fa 33.6 1.6E+02 0.0056 22.6 9.6 30 216-245 48-77 (213)
328 4a1g_A Mitotic checkpoint seri 33.3 1.4E+02 0.0047 21.6 11.7 47 325-371 83-130 (152)
329 3l6a_A Eukaryotic translation 32.6 2.3E+02 0.0079 24.1 10.3 176 205-380 14-220 (364)
330 3bqo_A Telomeric repeat-bindin 32.3 62 0.0021 24.5 4.3 23 103-125 123-145 (211)
331 2w57_A Ferric uptake regulatio 31.9 1.4E+02 0.0048 21.3 6.3 59 229-288 8-68 (150)
332 2rfa_A Transient receptor pote 31.9 1.3E+02 0.0045 22.8 6.8 56 314-370 158-222 (232)
333 2nsz_A Programmed cell death p 31.8 1.3E+02 0.0044 20.9 7.4 24 66-89 11-34 (129)
334 3kea_A K1L; tropism, ANK repea 30.4 57 0.002 26.3 4.5 202 139-368 35-244 (285)
335 3mwm_A ZUR, putative metal upt 30.2 68 0.0023 22.6 4.3 47 102-148 18-64 (139)
336 3ygs_P Procaspase 9; apoptosis 30.2 69 0.0023 20.9 3.9 34 77-114 52-85 (97)
337 1k1a_A B-cell lymphoma 3-encod 30.0 90 0.0031 23.9 5.5 24 32-55 13-36 (241)
338 2o03_A Probable zinc uptake re 29.5 1.1E+02 0.0037 21.2 5.2 43 279-321 17-59 (131)
339 1mzb_A Ferric uptake regulatio 29.4 1.5E+02 0.005 20.7 6.3 58 229-287 9-68 (136)
340 2ko4_A Mediator of RNA polymer 29.3 58 0.002 20.3 3.1 39 153-194 24-62 (81)
341 3mwm_A ZUR, putative metal upt 29.2 99 0.0034 21.8 5.0 44 278-321 19-62 (139)
342 2o03_A Probable zinc uptake re 28.9 66 0.0023 22.4 4.0 46 103-148 16-61 (131)
343 3qil_A Clathrin heavy chain 1; 28.3 1E+02 0.0035 21.3 4.4 52 27-83 34-85 (125)
344 2keb_A DNA polymerase subunit 27.8 1.3E+02 0.0045 19.7 6.2 57 255-313 27-88 (101)
345 3e3v_A Regulatory protein RECX 27.6 1.9E+02 0.0064 21.4 9.9 115 252-369 48-164 (177)
346 3ljn_A Hypothetical protein; a 26.9 96 0.0033 26.0 5.4 219 101-332 21-266 (364)
347 1g1e_B SIN3A; four-helix bundl 26.9 1.3E+02 0.0044 19.3 5.1 30 323-353 10-39 (89)
348 3ltm_A Alpha-REP4; protein eng 25.9 2.1E+02 0.0071 21.4 18.7 169 96-285 32-201 (211)
349 3lxu_X Tripeptidyl-peptidase 2 25.8 5.6E+02 0.019 26.4 10.9 85 288-375 1265-1350(1354)
350 1oyz_A Hypothetical protein YI 25.4 2.5E+02 0.0086 22.2 21.2 59 305-370 204-262 (280)
351 2p22_A Suppressor protein STP2 25.3 80 0.0027 23.4 3.8 51 306-357 110-160 (174)
352 3twr_A Tankyrase-2; ankyrin re 25.1 1.1E+02 0.0036 21.8 4.8 12 180-191 17-28 (165)
353 3jxi_A Vanilloid receptor-rela 25.0 85 0.0029 24.6 4.5 22 349-370 229-250 (260)
354 2ijq_A Hypothetical protein; s 24.9 2E+02 0.007 21.0 8.4 51 320-370 45-103 (161)
355 3ltj_A Alpharep-4; protein eng 24.6 2.1E+02 0.0073 21.1 18.2 117 101-231 63-179 (201)
356 4g8k_A 2-5A-dependent ribonucl 24.5 2.9E+02 0.0099 22.6 8.7 94 258-362 220-318 (337)
357 2etb_A Transient receptor pote 24.4 1.3E+02 0.0044 23.4 5.5 21 349-369 225-245 (256)
358 2rg8_A Programmed cell death p 23.9 48 0.0016 24.4 2.5 24 172-195 14-37 (165)
359 1bpo_A Protein (clathrin); cla 23.7 3.9E+02 0.013 23.7 10.3 61 99-160 363-423 (494)
360 2wvi_A Mitotic checkpoint seri 23.6 2.2E+02 0.0075 20.9 10.4 51 187-237 79-130 (164)
361 2fe3_A Peroxide operon regulat 23.4 2E+02 0.0068 20.3 8.4 15 145-159 34-48 (145)
362 1bpo_A Protein (clathrin); cla 23.1 4E+02 0.014 23.6 9.8 111 110-226 342-452 (494)
363 3d5l_A Regulatory protein RECX 22.7 2.7E+02 0.0092 21.5 9.3 51 253-304 92-142 (221)
364 3e3v_A Regulatory protein RECX 21.9 2.5E+02 0.0084 20.8 7.4 12 118-129 54-65 (177)
365 2zu6_B Programmed cell death p 21.8 3.4E+02 0.012 22.4 12.1 69 275-344 169-239 (307)
366 3jxi_A Vanilloid receptor-rela 21.6 1.1E+02 0.0038 23.9 4.6 21 179-199 13-33 (260)
367 1qsa_A Protein (soluble lytic 21.3 4.9E+02 0.017 24.1 31.8 77 66-148 76-152 (618)
368 2crb_A Nuclear receptor bindin 21.0 1.8E+02 0.0061 18.9 4.3 25 309-333 17-41 (97)
369 2xig_A Ferric uptake regulatio 21.0 2.3E+02 0.0079 20.1 8.8 44 137-181 31-74 (150)
370 1wgl_A TOLL-interacting protei 21.0 1.1E+02 0.0037 17.9 3.1 16 110-125 36-51 (59)
371 2rpa_A Katanin P60 ATPase-cont 20.4 1.7E+02 0.0057 18.3 5.0 22 348-369 18-39 (78)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-33 Score=262.35 Aligned_cols=355 Identities=10% Similarity=0.003 Sum_probs=309.6
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHH--------------------------------
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLT-------------------------------- 68 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l-------------------------------- 68 (403)
.+.+...+..++..+.+.|++++|+++|+++.+.+ |.. ...+..+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC-YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh-hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 35567889999999999999999999999999987 532 2222222
Q ss_pred ------HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 69 ------VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 69 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
+..|.+.|++++|.++|+++... +++..++..++..|.+.|++++|+++|+++.+.++. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 44556789999999999999754 577888999999999999999999999999987654 788999999999
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
.+.|++++|..+++++.+ ..+.+..+++.++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus 350 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 44567889999999999999999999999999886 334688999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
+++|+++.+.+ +.+..++..+...+ ..|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.
T Consensus 427 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999874 34677888888888 9999999999999998874 447889999999999999999999999999875
Q ss_pred ----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 302 ----GCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 302 ----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. |+
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~ 582 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PN 582 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC
Confidence 66777 7899999999999999999999999999876 6689999999999999999999999999999854 55
Q ss_pred hHHHHHHHHHHhC
Q 015673 376 VLRAWKKVEEELG 388 (403)
Q Consensus 376 ~~~~~~~l~~~~~ 388 (403)
....|..+...|.
T Consensus 583 ~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 583 EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHh
Confidence 5668887776653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-32 Score=253.09 Aligned_cols=359 Identities=9% Similarity=-0.079 Sum_probs=223.4
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
++...|..++..+.+.|++++|+.+|+++.... | +..++..++.+|.+.|++++|..+|+.+.. .+++..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G--NPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--C--CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHH
Confidence 566778889999999999999999999998766 5 345667788888888888888888888753 2456667777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh-C--------------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDE-L--------------GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN---- 163 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 163 (403)
++.+|.+.|++++|+++|+++.. . +.+++..+|+.++.+|.+.|++++|..+|+++.+...
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 77777777888888777774322 1 2234577777777777777777777777776643310
Q ss_pred -----------------------------------------------------------------CCCchHHHHHHHHHH
Q 015673 164 -----------------------------------------------------------------LSPDKISYGLLLKSH 178 (403)
Q Consensus 164 -----------------------------------------------------------------~~~~~~~~~~l~~~~ 178 (403)
.+++..+++.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 136778888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCC---------------------------------CCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 179 CDSGSSDKALELLNEMENKGV---------------------------------EVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
.+.|++++|.++|+++.+.+. +.+..++..++.+|.+.|++++|.++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 888999888888888876532 12334444455555555555555555
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
|+++.+.. +.+..+++.+...+ ..|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55554432 12334444444444 5555555555555555442 2244555555555555555555555555555443 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLR 378 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 378 (403)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+..| +...
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChH
Confidence 34555555555666666666666666555544 33444 45555566666666666666666665555332 2233
Q ss_pred HHHHHHHHhCCCC
Q 015673 379 AWKKVEEELGLVP 391 (403)
Q Consensus 379 ~~~~l~~~~~~~~ 391 (403)
.|..+...|...+
T Consensus 552 ~~~~l~~~~~~~g 564 (597)
T 2xpi_A 552 VHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 5555555544443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.2e-32 Score=245.70 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=127.0
Q ss_pred HHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC---------hH
Q 015673 116 AMRTFDQMDELGTPRSV-ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS---------SD 185 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 185 (403)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544333 34666667777777777777777777655 677777777777777765543 45
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR 264 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~ 264 (403)
.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++ +.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677777666666777777777777777777777777776666666666666666666666 6666666666666666
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (403)
+.|+.||..||++|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666655
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.4e-32 Score=244.81 Aligned_cols=206 Identities=14% Similarity=0.245 Sum_probs=180.2
Q ss_pred chHHHHHHHhhcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------c
Q 015673 79 SDIETLIESHKNDPKITQE-PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL---------Y 148 (403)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 148 (403)
..+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666667655554443 45788999999999999999999999999999999999999999998776 4
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
++|.++|++|.+. |+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 5689999999776 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN 285 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (403)
|.+.|+.||..+|+.++.++ +.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999 9999999999999999999999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.2e-29 Score=219.99 Aligned_cols=352 Identities=11% Similarity=-0.009 Sum_probs=285.5
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+...+..+...+...|++++|...++.+.+.. |. ...+|..++..+.+.|++++|...|+++.. ..|.+...+..+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l 107 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL-LAEAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINL 107 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCcchHHHHHHH
Confidence 34556667777888899999999998888877 43 566778888889999999999999998874 345556678888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
+.++.+.|++++|++.|+++.+.++. +...+..+...+...|++++|..+|+++.+. .+.+..+|..+...+...|+
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 88899999999999999988876533 5666777888888889999999999888763 34456788888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE 262 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 262 (403)
+++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+... .+...+..+...+ ..|++++|...|++
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988763 34667888888899999999999999988887642 2355566666666 88999999999999
Q ss_pred HHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 015673 263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF 342 (403)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (403)
+.+.+ +.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+.
T Consensus 263 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 339 (388)
T 1w3b_A 263 AIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA 339 (388)
T ss_dssp HHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH
T ss_pred HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH
Confidence 98874 3356788889999999999999999999998774 6678889999999999999999999999998764 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673 343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG 388 (403)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (403)
.++..+..+|.+.|++++|...++++.+ ..|+....|..+...+.
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHT-TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHhHHHHHH
Confidence 8899999999999999999999999987 55666778877766553
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.3e-28 Score=213.93 Aligned_cols=350 Identities=11% Similarity=-0.006 Sum_probs=298.6
Q ss_pred HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc
Q 015673 31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110 (403)
Q Consensus 31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (403)
+...+.+.|++++|++.++.+.+.. |. +...+..+...+...|++++|...++.... ..+.+...|..+...+.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHC
Confidence 4566778999999999999999988 54 445667888899999999999999999874 4567788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 015673 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALEL 190 (403)
Q Consensus 111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (403)
|++++|+..|+++.+..+. +..+|..+..++.+.|++++|...|+++.+. .+.+...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999886532 5678999999999999999999999999864 233456778889999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC
Q 015673 191 LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLK 269 (403)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~ 269 (403)
|+++.+. .+.+..+|..+..++...|++++|...|+++.+.+. .+...+..+-..+ ..|++++|...+++..+.. +
T Consensus 158 ~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 9999886 344678999999999999999999999999998742 2344555555555 8999999999999998864 3
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349 (403)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (403)
.+..++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..++.+.|++++|...|+++++.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 357788999999999999999999999999875 4467889999999999999999999999999876 77889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCC
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAP 393 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 393 (403)
..+.+.|++++|...++++.+. .|+....|..+...+...++.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999874 455566788887777665543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=9.6e-26 Score=203.90 Aligned_cols=362 Identities=14% Similarity=0.075 Sum_probs=291.1
Q ss_pred CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673 19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP 98 (403)
Q Consensus 19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (403)
...|.+...+..++..+.+.|++++|+.+|+.+.+.. |. +..++..++.++...|++++|...|+++... .+.+..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 95 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTA 95 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcHH
Confidence 3455566788889999999999999999999999887 44 5677889999999999999999999999853 455677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH---HHHHHH------------HHHHHhcCCcCcHHHHHHHchhhCC
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV---ISFNAL------------LFACTRSRLYDKVPILFDEIPKKYN 163 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 163 (403)
.+..++.+|.+.|++++|...|+.+.+.++. +. ..+..+ ...+...|++++|..+|+++.+.
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 172 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-- 172 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 8889999999999999999999999986532 34 555555 34488999999999999999864
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHH
Q 015673 164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA-AYN 242 (403)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 242 (403)
.+.+...+..++.+|.+.|++++|.++|+++.+. .+.+..++..++.+|...|++++|...|+++.+.. |+.. .+.
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 249 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA 249 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHH
Confidence 4457788999999999999999999999999876 34578899999999999999999999999998763 4333 333
Q ss_pred HH------------Hhhh-cCCChHHHHHHHHHHHHCCCCCC-----hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 243 VR------------ITNT-YGGDPERLKELIDEMRDAGLKPD-----TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 243 ~l------------l~~~-~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
.+ ...+ ..|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-P 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 22 3445 889999999999999886 444 3478888999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG------------LVKKK-----KIKEAKGVIRT 367 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 367 (403)
.+...|..+..+|...|++++|...++++++.. +.+...+..+..+ |...| +.+++.+.+++
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 578899999999999999999999999999765 4556777666633 43444 56778888887
Q ss_pred HHHhCCch----------hHHHHHHHHHHhCCCCCCC
Q 015673 368 IKKKFPPN----------VLRAWKKVEEELGLVPAPA 394 (403)
Q Consensus 368 ~~~~~~~~----------~~~~~~~l~~~~~~~~~~~ 394 (403)
......|+ ....+..+.++|..-+|+.
T Consensus 406 ~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 406 LALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 43333333 2336777888887776653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.8e-25 Score=197.60 Aligned_cols=328 Identities=12% Similarity=0.037 Sum_probs=264.1
Q ss_pred HHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 015673 43 KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122 (403)
Q Consensus 43 ~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 122 (403)
.+...+..+.... | .+...+..++..+.+.|++++|..+|+++.. ..+.+...+..++.++...|++++|+..|++
T Consensus 10 ~~~~~~~~~~~~~--p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQS--M-ADVEKHLELGKKLLAAGQLADALSQFHAAVD-GDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccc--H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455555555 3 3667788899999999999999999999985 3556678889999999999999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch---HHHHHH------------HHHHHhcCChHHH
Q 015673 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK---ISYGLL------------LKSHCDSGSSDKA 187 (403)
Q Consensus 123 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 187 (403)
+.+.++. +..++..+..+|.+.|++++|...|+++.+. .+.+. ..+..+ ...+...|++++|
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9987653 6889999999999999999999999999753 22333 455555 4458899999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
...|+++.+. .+.+...+..++.+|.+.|++++|..+|+++.+.. +.+...+..+...+ ..|++++|...|+++.+.
T Consensus 163 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999886 34578889999999999999999999999998863 34566777777777 999999999999999876
Q ss_pred CCCCChhcHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHH
Q 015673 267 GLKPDTISYNFL------------MTCYCKNEMMDEAKKVYEGLEENGCSPN-----ATTFRTWIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 267 ~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 329 (403)
. +.+...+..+ ...|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|+..
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3 2234444444 78899999999999999999986 344 44788889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE 384 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 384 (403)
++++++.. +.+..++..+..+|...|++++|...++++.+ ..|+....|..+.
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchHHHHHHHH
Confidence 99998765 56789999999999999999999999999998 5555566777666
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-23 Score=193.55 Aligned_cols=350 Identities=11% Similarity=0.002 Sum_probs=278.1
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC-------
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT------- 95 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 95 (403)
|+...+..++..+...|++++|+..|+.+.+.+ |. +..++..++.++...|++++|...|+++.......
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHH
Confidence 356788888999999999999999999999887 44 55677888999999999999999998886443211
Q ss_pred -----------------------------------------------------------------------CHHHHHHHH
Q 015673 96 -----------------------------------------------------------------------QEPYLCNLI 104 (403)
Q Consensus 96 -----------------------------------------------------------------------~~~~~~~l~ 104 (403)
+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 122233333
Q ss_pred HHHhc---cCCHHHHHHHHHHHHh-----C--CC------CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch
Q 015673 105 RSYGQ---AGMFDHAMRTFDQMDE-----L--GT------PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK 168 (403)
Q Consensus 105 ~~~~~---~~~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 168 (403)
..+.. .|++++|+..|+++.+ . .. +.+..++..+...+...|++++|..+|+++.+. . |+.
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~ 270 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRV 270 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccH
Confidence 33443 7899999999999877 3 11 123567788888899999999999999999865 2 337
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
..+..+..++...|++++|...++++.+. .+.+...+..+..++...|++++|...++++.+.... +...+..+...+
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHH
Confidence 78889999999999999999999999886 3446788899999999999999999999999887433 445555556666
Q ss_pred -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHc---
Q 015673 249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTFRTWIYHLCG--- 319 (403)
Q Consensus 249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~--- 319 (403)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .++ ...+..+...+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 8999999999999998763 33567888899999999999999999999876421 111 3478888999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673 320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV 383 (403)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (403)
.|++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+..| +....|..+
T Consensus 428 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~ 489 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TMEEKLQAI 489 (514)
T ss_dssp TTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence 999999999999998865 56788899999999999999999999999988544 444455543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-24 Score=195.43 Aligned_cols=356 Identities=11% Similarity=0.024 Sum_probs=289.0
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+......+.+.|++++|+..|+++.+.+ | +..++..++.++...|++++|...++++.. ..+.+...+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--E--DPVFYSNLSACYVSVGDLKKVVEMSTKALE-LKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-cChHHHHHHHHHHH
Confidence 457778899999999999999999999988 6 567888999999999999999999999985 34566778899999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-------------------------------------------------------
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPR------------------------------------------------------- 130 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------------------------- 130 (403)
++...|++++|...|+.+.+.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999987765311
Q ss_pred -----------------------cHHHHHHHHHHHHh---cCCcCcHHHHHHHchh-----hCCC-------CCchHHHH
Q 015673 131 -----------------------SVISFNALLFACTR---SRLYDKVPILFDEIPK-----KYNL-------SPDKISYG 172 (403)
Q Consensus 131 -----------------------~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~ 172 (403)
+...+......+.. .|++++|..+|+++.+ .... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 12333333333443 7999999999999876 2011 23456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCC
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGG 251 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~ 251 (403)
.+...+...|++++|...|+++.+... +...+..+..++...|++++|...++++.+... .+...+..+...+ ..|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 899999999999999999999988643 388899999999999999999999999988743 3455566666666 999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999874 3356788889999999999999999999998764 4467788899999999999999999999
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 332 ESVMVHKI-PD----FNTVKLLVEGLVK---KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 332 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
++.+.... ++ ...+..+..++.. .|++++|...++++.+.. |+....|..+...+...++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 98875311 11 3488889999999 999999999999998854 4445577777776655544
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=7.1e-22 Score=172.77 Aligned_cols=330 Identities=12% Similarity=0.024 Sum_probs=224.8
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
+..+..+...+...|++++|+..|+.+.+.. |. +..++..++..+...|++++|...++++... .+.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcchHHHHHH
Confidence 4566778888888999999999999998877 43 5567778888888999999999999888743 445567788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCC--CcHHHHHHH------------HHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTP--RSVISFNAL------------LFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 170 (403)
.++...|++++|...|+.+.+..+. .+...+..+ ...+...|++++|..+++++.+. .+.+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHH
Confidence 8888999999999999988875430 134444444 35566666777777777666553 2345556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG 250 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 250 (403)
+..+...+...|++++|...++++.+. .+.+..++..+..++...|++++|...+++..+.. |+....
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~--------- 224 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRC--------- 224 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHH---------
Confidence 666666666677777777777666665 23455666666666666667776666666666542 221110
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHH
Q 015673 251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT----TFRTWIYHLCGSGNFDKA 326 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a 326 (403)
...+..+. .......+...+.+.|++++|...++++.+.. +.+.. .+..+..++...|++++|
T Consensus 225 ------~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 225 ------FAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ------HHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 00111110 11122234666778888888888888887753 22332 344566788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
...++++.+.. +.+..++..+..++...|++++|.+.++++.+ ..|+....|..+..+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence 88888888764 55778888888888888888888888888887 4455555676666554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=8.6e-22 Score=172.26 Aligned_cols=286 Identities=11% Similarity=0.020 Sum_probs=213.6
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC---CCH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI---TQE 97 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~ 97 (403)
.|.++..+..+...+...|++++|+..|+.+.+.. |. ....+..+...+...|++++|...++++... .+ .+.
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 108 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NPSEQEEK 108 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-CCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCcccChH
Confidence 34556788889999999999999999999999987 54 4577889999999999999999999999843 33 344
Q ss_pred HHHHHH------------HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673 98 PYLCNL------------IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS 165 (403)
Q Consensus 98 ~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (403)
..+..+ ...+...|++++|+..|+.+.+..+ .+...+..+...+...|++++|...++++.+ ..+
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~ 185 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASK--LKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 445444 5888999999999999999988765 3788899999999999999999999999986 345
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV------------LNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
.+...+..+...+...|++++|...++++.+.. +.+...+..+ ...+.
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~------------------- 245 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELI------------------- 245 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 577889999999999999999999999998763 2233333222 22333
Q ss_pred CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCC-h----hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673 234 VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPD-T----ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT 308 (403)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (403)
..|++++|...++++.+.. |+ . ..+..+..++...|++++|...++...+.. +.+..
T Consensus 246 ---------------~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 246 ---------------RDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp ---------------HTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---------------HcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 4455555555555555432 22 1 224446667777788888888887777653 44667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
++..+...+...|++++|...|+++.+.. +.+...+..+..+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 77777777888888888888888877654 34455555554443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=181.16 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=247.9
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...+..+...+.+.|++++|++.|+.+.+.+ |. +..++..++.++...|++++|.+.++++.. ..+.+...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PN-EPVFYSNISACYISTGDLEKVIEFTTKALE-IKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCchHHHHHHHH
Confidence 3456667777777888888888888887776 43 456667777777888888888888887764 3345566677777
Q ss_pred HHHhccCCHHHHHHHHHHH-------------------------------------------------------------
Q 015673 105 RSYGQAGMFDHAMRTFDQM------------------------------------------------------------- 123 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~------------------------------------------------------------- 123 (403)
.++...|++++|+..|+.+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 7777777777777666422
Q ss_pred ------------------------------------------------HhCCCCCc-------HHHHHHHHHHHHhcCCc
Q 015673 124 ------------------------------------------------DELGTPRS-------VISFNALLFACTRSRLY 148 (403)
Q Consensus 124 ------------------------------------------------~~~~~~~~-------~~~~~~ll~~~~~~~~~ 148 (403)
.+..+. + ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence 221111 1 12355555667778888
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
++|...++++.+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...+++
T Consensus 260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8898888888754 3557778888888889999999999999888763 34677888888999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-----
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG----- 302 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 302 (403)
+.+.... +...+..+...+ ..|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8886432 344555555555 8899999999999988764 3356678888889999999999999999877532
Q ss_pred CCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 303 CSPNATTFRTWIYHLCGS----------GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
.......+......+... |++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111122244445667777 99999999999988765 5677889999999999999999999999998754
Q ss_pred Cc
Q 015673 373 PP 374 (403)
Q Consensus 373 ~~ 374 (403)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 43
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.4e-21 Score=165.80 Aligned_cols=284 Identities=6% Similarity=-0.063 Sum_probs=193.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
+...+..++..+...|++++|+++|+.+.+..+. +...+..++..+...|++++|..+++++.+. .+.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 3344556666666677777777777777665432 4455555666667777777777777777653 233556667777
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCCh
Q 015673 176 KSHCDSG-SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDP 253 (403)
Q Consensus 176 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~ 253 (403)
..+...| ++++|.+.|+++.+.. +.+...|..+..++...|++++|...++++.+.... +...+..+...+ ..|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777776652 335566777777777777777777777777765422 223333344444 77777
Q ss_pred HHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCChHH
Q 015673 254 ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG--------CSPNATTFRTWIYHLCGSGNFDK 325 (403)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 325 (403)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777777653 3356677777788888888888888888776531 12335677778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..+ ..|+....|..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG-LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT-TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc-cCCCchHHHHHHHHHH
Confidence 888888887765 45667777888888888888888888888776 4455556777777766
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.6e-20 Score=162.19 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=201.2
Q ss_pred CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673 20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99 (403)
Q Consensus 20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (403)
..+.++..+...+..+...|++++|+++|+.+.+.. |. +...+..++..+...|++++|..+++++.. ..+.+...
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 92 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF-HASCLPVHIGTLVELNKANELFYLSHKLVD-LYPSNPVS 92 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTSTHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCCHHH
Confidence 344455667777777777888888888888887776 43 334455667777778888888888887764 33445566
Q ss_pred HHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673 100 LCNLIRSYGQAG-MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178 (403)
Q Consensus 100 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (403)
+..+...+...| ++++|...|+++.+.... +...|..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 777777777777 788888888887775532 5667777777777778888888777777653 233455566677777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHH
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE 258 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~ 258 (403)
...|++++|.+.++++.+. .+.+...+..+..++...|++++|...++++.+...... +
T Consensus 170 ~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------~------ 228 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------N------ 228 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS--------------C------
T ss_pred HHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc--------------c------
Confidence 7777777777777777765 234566677777777777777777777776655310000 0
Q ss_pred HHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673 259 LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (403)
....+.+..++..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+..
T Consensus 229 ------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 300 (330)
T 3hym_B 229 ------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR- 300 (330)
T ss_dssp ------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-
T ss_pred ------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-
Confidence 00012234566677777777777777777777777653 3455667777777777777777777777776554
Q ss_pred CCCHHHHHHHHHHH-HhcCCH
Q 015673 339 IPDFNTVKLLVEGL-VKKKKI 358 (403)
Q Consensus 339 ~~~~~~~~~l~~~~-~~~g~~ 358 (403)
+.+...+..+..++ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 44566666666666 345544
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.1e-20 Score=165.94 Aligned_cols=312 Identities=12% Similarity=-0.022 Sum_probs=219.3
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHH-HHHHhhcCCCC-C--CHHHHHHHHHHHhccCCH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIET-LIESHKNDPKI-T--QEPYLCNLIRSYGQAGMF 113 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~ 113 (403)
.+.++.+...|+.+...+ |. ++...|++++|.+ .+++....... | +...+..+...+.+.|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE-----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL 80 (368)
T ss_dssp ---------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHHHcCC--ch-----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH
Confidence 345556666666665554 21 2234477888887 77766532211 1 234566788888899999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 015673 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNE 193 (403)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (403)
++|+..|+++.+..+. +..++..+..++...|++++|...|+++.+. .+.+..++..+..++...|++++|.+.+++
T Consensus 81 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp HHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998886543 6778888888899999999999999988764 345677888889999999999999999998
Q ss_pred HHhCCCCCchhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhh-cCCChHHH
Q 015673 194 MENKGVEVTTVTYTT---------------VLNCLYKQGNAEEAERLWSEMEKKGVDL-DVAAYNVRITNT-YGGDPERL 256 (403)
Q Consensus 194 ~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~-~~~~~~~a 256 (403)
+.+.... +...+.. .+..+...|++++|...++++.+..... +...+..+...+ ..|++++|
T Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 158 WLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8876322 2222221 2333448899999999999998874332 356666666666 89999999
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 237 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 237 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999988763 3357789999999999999999999999998764 556788999999999999999999999998875
Q ss_pred CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 337 HKIPD-----------FNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 337 ~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
. +.+ ..+|..+..+|...|++++|..++++..
T Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 315 Q-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp H-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred C-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 3 222 6889999999999999999999887544
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.8e-18 Score=159.83 Aligned_cols=306 Identities=13% Similarity=0.001 Sum_probs=246.2
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC----------
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND---------- 91 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 91 (403)
|.++..+..++..+...|++++|++.|+++.+.+ |. +..++..++.++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 132 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PD-HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------C
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHH
Confidence 3456788889999999999999999999999988 54 5667788899999999999888877433111
Q ss_pred --------------------------------------------------------------------------------
Q 015673 92 -------------------------------------------------------------------------------- 91 (403)
Q Consensus 92 -------------------------------------------------------------------------------- 91 (403)
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence
Q ss_pred ------------------CCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 92 ------------------PKITQE-------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 92 ------------------~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
..+.+. ..+..+...+...|++++|+..|+.+.+.. |+...+..+...+...|
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhc
Confidence 111111 134556677888999999999999999865 55888999999999999
Q ss_pred CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
++++|...++++.+. .+.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+
T Consensus 291 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999874 34567889999999999999999999999998863 346788999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCC-----ChhcHHHHHHHHHhc----------CChHH
Q 015673 227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKP-----DTISYNFLMTCYCKN----------EMMDE 290 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------~~~~~ 290 (403)
+++.+.. +.+...+..+...+ ..|++++|...++++.+..... ....+..+..++... |++++
T Consensus 368 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 368 NETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9999874 23445566666666 9999999999999987652111 112234455677777 99999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
|...|+.+.+.. +.+...+..+..++...|++++|.+.|+++.+..
T Consensus 447 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 447 AIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999874 5577889999999999999999999999999865
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.1e-20 Score=162.33 Aligned_cols=293 Identities=11% Similarity=-0.058 Sum_probs=226.4
Q ss_pred hhhccCChHHHHH-HHHHhhhccCC-CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673 34 KLRSEFDPDKALD-IYSSVSKHYAS-PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 34 ~l~~~~~~~~A~~-~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (403)
.+...|++++|++ .|++....... |..+...+..+...+...|++++|...|+++.. ..+.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCc
Confidence 3445689999999 99988765511 222355677889999999999999999999985 45567778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH---------------HHH
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL---------------LLK 176 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~ 176 (403)
++++|+..|+++.+.++. +..++..+...+...|++++|...++++.+.. +.+...+.. .+.
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 999999999999887643 78899999999999999999999999998642 222222221 233
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673 177 SHCDSGSSDKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE 254 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 254 (403)
.+...|++++|...|+++.+..... +..++..+..++...|++++|...++++.+.. +.+...+..+...+ ..|+++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3448899999999999998863221 57889999999999999999999999998874 23455666666666 999999
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCChH
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS----------PNATTFRTWIYHLCGSGNFD 324 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~ 324 (403)
+|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+.... ....+|..+..++...|+.+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999998864 346778999999999999999999999998764211 12678999999999999999
Q ss_pred HHHHHHHH
Q 015673 325 KAYKVFKE 332 (403)
Q Consensus 325 ~a~~~~~~ 332 (403)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99988764
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=4.3e-20 Score=162.09 Aligned_cols=265 Identities=11% Similarity=-0.025 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK 176 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (403)
...+..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|++++|+..|+++.+. .+.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 344777888888999999999999998886643 7888899999999999999999999998764 3446778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCch----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHH
Q 015673 177 SHCDSGSSDKALELLNEMENKGVEVTT----------VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL-DVAAYNVRI 245 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll 245 (403)
+|...|++++|...|+++.+... .+. ..+..+..++...|++++|...++++.+..... +...+..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999877521 122 223345778889999999999999998874331 456666666
Q ss_pred hhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 015673 246 TNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD 324 (403)
Q Consensus 246 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 324 (403)
..+ ..|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 666 8899999999999988764 3467789999999999999999999999998764 446888999999999999999
Q ss_pred HHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 325 KAYKVFKESVMVHKI-----------PDFNTVKLLVEGLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 325 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (403)
+|...|+++++.... .+..+|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998765311 1357788899999999999888877655
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.2e-16 Score=143.96 Aligned_cols=320 Identities=12% Similarity=0.024 Sum_probs=179.0
Q ss_pred cchhHHHHHhhhhc----cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCC
Q 015673 24 SSISVSKAKSKLRS----EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAK----SKRFSDIETLIESHKNDPKIT 95 (403)
Q Consensus 24 ~~~~~~~l~~~l~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 95 (403)
++.....+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|.+.|++....+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 45566666666666 777888888888777665 34556667777777 777777887777776532
Q ss_pred CHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCc
Q 015673 96 QEPYLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPD 167 (403)
Q Consensus 96 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 167 (403)
+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+. + +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---C
Confidence 34455566666766 667777777777776654 45566666666665 56677777777776553 2 4
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchH
Q 015673 168 KISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVA 239 (403)
Q Consensus 168 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 239 (403)
...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.+. ..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HH
Confidence 5566666666665 566667777666666543 33445555555554 5556666666665555421 11
Q ss_pred HHHHHHhhh-c----CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHCCC------
Q 015673 240 AYNVRITNT-Y----GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN-----EMMDEAKKVYEGLEENGC------ 303 (403)
Q Consensus 240 ~~~~ll~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~------ 303 (403)
.+..+-..+ . .++.++|...|++..+.| +...+..+...|... +++++|...|++..+.|.
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 333 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQAN 333 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 111111112 2 455555555555554432 233334444444443 444444444444444320
Q ss_pred --------------------------CCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673 304 --------------------------SPNATTFRTWIYHLCG----SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 304 --------------------------~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (403)
..+...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 0133444444444444 455555555555555433 2344444555555
Q ss_pred h----cCCHHHHHHHHHHHHH
Q 015673 354 K----KKKIKEAKGVIRTIKK 370 (403)
Q Consensus 354 ~----~g~~~~a~~~~~~~~~ 370 (403)
+ .+++++|...|++..+
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 4 4555555555555544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.7e-19 Score=156.99 Aligned_cols=266 Identities=11% Similarity=-0.079 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
..+..++..+.+.|++++|...|+++.. ..+.+...+..+..++...|++++|+..|+++.+..+. +..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3345555556666666666666666553 23344555555666666666666666666666554322 455566666666
Q ss_pred HhcCCcCcHHHHHHHchhhCCCC--------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHHHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLS--------PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTVLNCL 213 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 213 (403)
...|++++|...|+++.+..... .....+..+...+...|++++|.+.++++.+.... .+..++..+..+|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 66666666666666655421000 01122334566777777777777777777765221 1466777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHH
Q 015673 214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK 292 (403)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 292 (403)
...|++++|...++++.+.. +.+...+..+...+ ..|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777653 22455555555555 7777788887777777653 234667788888888888888888
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673 293 KVYEGLEENGCS-----------PNATTFRTWIYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 293 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (403)
..|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888887653200 1256788888888888888888777654
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=5.1e-19 Score=152.55 Aligned_cols=261 Identities=10% Similarity=-0.034 Sum_probs=154.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
+...+...|++++|+.+|+++.+..+. +...+..+..++...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcC
Confidence 344444444444444444444443221 3344444444444444444444444444332 1223344444444455555
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTV--------------LN-CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 247 (403)
++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 5555555555444431 1112222221 12 25556666777777776666532 234444444444
Q ss_pred h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 015673 248 T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326 (403)
Q Consensus 248 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 326 (403)
+ ..|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 4 6677777777777766653 3356677888888888899999999888887764 44677888888888999999999
Q ss_pred HHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 327 YKVFKESVMVHKIP-----------DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 327 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+.++++.+..... +..++..+..++.+.|++++|..++++..+
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99998887654211 467888889999999999999888876543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.8e-18 Score=146.01 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=118.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCchHHHHHHHHHHHhc
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPDKISYGLLLKSHCDS 181 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 181 (403)
+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.++++... +. +-+...+..+...+...
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHC
Confidence 344444444444444433221 1233444444444444444555555555544332 22 22333344444555555
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH---Hhhh-cCCChHHHH
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR---ITNT-YGGDPERLK 257 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~-~~~~~~~a~ 257 (403)
|++++|++.+++ +.+...+..++.++.+.|++++|.+.++++.+.. |+....+.. +..+ ..|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555555555544 2344455555555555555555555555555542 332211111 1111 346666666
Q ss_pred HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 015673 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK-AYKVFKESVMV 336 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 336 (403)
.+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6666666652 4466677777777777778888887777777654 4466677777777777777765 45677777665
Q ss_pred C
Q 015673 337 H 337 (403)
Q Consensus 337 ~ 337 (403)
.
T Consensus 265 ~ 265 (291)
T 3mkr_A 265 H 265 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.3e-16 Score=142.05 Aligned_cols=300 Identities=12% Similarity=0.020 Sum_probs=233.1
Q ss_pred HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc----cCCH
Q 015673 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAK----SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ----AGMF 113 (403)
Q Consensus 42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 113 (403)
..+++.++...+.+ +..++..+...|.. .+++++|...|++.... .+...+..|...|.. .+++
T Consensus 24 ~~~~~~~~~~a~~g-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 24 NVNLEQLKQKAESG-----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp -CCHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred hHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCH
Confidence 33466666666655 45666778888888 89999999999998864 345677788899988 8999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh----cCChH
Q 015673 114 DHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD----SGSSD 185 (403)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 185 (403)
++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+. + +...+..+...|.. .++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999998864 66778888888888 78999999999999765 3 56778888888887 78999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c----CCChHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y----GGDPERL 256 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~----~~~~~~a 256 (403)
+|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+-..+ . .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998874 67788888888988 899999999999998875 334444444444 3 7899999
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS-----GNFDKAY 327 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 327 (403)
...|++..+.| +...+..+...|.. .++.++|...|+...+.| +...+..+...|... ++.++|+
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998865 56677778888887 899999999999998765 455666677777766 7888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHh
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKK---KIKEAKGVIRTIKKK 371 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 371 (403)
..+++..+.+ +...+..+...|...| ++++|.+.+++..+.
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 8888777654 3345555555555544 566666666666553
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=5.4e-18 Score=143.13 Aligned_cols=256 Identities=13% Similarity=0.119 Sum_probs=206.4
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (403)
+-....|+++.|+..++......+.........+..+|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence 44557899999999998876543222234556778899999999999876644 2456788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673 185 DKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE 262 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 262 (403)
++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+ ..|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876434 566677788999999999999999987 34566677777777 99999999999999
Q ss_pred HHHCCCCCChhcH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 015673 263 MRDAGLKPDTISY---NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339 (403)
Q Consensus 263 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 339 (403)
+.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++++.. +
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 9987 3553321 122334445699999999999999874 6788899999999999999999999999999876 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCch
Q 015673 340 PDFNTVKLLVEGLVKKKKIKE-AKGVIRTIKKKFPPN 375 (403)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~ 375 (403)
.++.++..++..+...|+.++ +.++++++.+..|.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 788999999999999999876 678999998855544
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=8.8e-19 Score=151.07 Aligned_cols=279 Identities=9% Similarity=-0.071 Sum_probs=190.6
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+...+......+...|++++|+.+|+.+.+.. |. +...+..++..+...|++++|...++++... .+.+...+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE-REEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHH
Confidence 44566777788888888888888888888776 43 4566677778888888888888888887643 44556667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH--HHHhc
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK--SHCDS 181 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 181 (403)
..++...|++++|++.++.+.+.... +...+..+... .|+......+.. .+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHc
Confidence 88888888888888888887765422 22222221000 011111112212 25667
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI 260 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~ 260 (403)
|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+ ..|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77888888888877653 3366777778888888888888888888877763 22344555555555 778888888888
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCChHHHHHH
Q 015673 261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-----------NATTFRTWIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~ 329 (403)
+++.+.. +.+...+..+..+|...|++++|...++++.+..... +...+..+..++...|+.++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8877653 3356778888899999999999999999887653111 467888889999999999999988
Q ss_pred HHHH
Q 015673 330 FKES 333 (403)
Q Consensus 330 ~~~~ 333 (403)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.5e-17 Score=149.71 Aligned_cols=341 Identities=11% Similarity=-0.009 Sum_probs=233.6
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhcc-----C-CCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC------
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHY-----A-SPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND------ 91 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~-~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 91 (403)
....|+.+...+...|++++|++.|+++++.. . .......+|..+..+|...|++++|...++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35578889999999999999999999986531 0 01124566788999999999999999998876531
Q ss_pred -CCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH---HHhcCCcCcHHHHHHHchhhCCCC
Q 015673 92 -PKITQEPYLCNLIRSYGQ--AGMFDHAMRTFDQMDELGTPRSVISFNALLFA---CTRSRLYDKVPILFDEIPKKYNLS 165 (403)
Q Consensus 92 -~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~ 165 (403)
.......++..+..++.. .+++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+. .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 122334556655555544 45799999999999886643 45556555554 44567889999999988764 23
Q ss_pred CchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH
Q 015673 166 PDKISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (403)
.+...+..+...+.. .+++++|.+++++.... .+.+..++..+...|...|++++|...+++..+.... +...+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 455566666555544 46788999999998876 3457788999999999999999999999999887432 23333
Q ss_pred HHHHhhh--------------------cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 242 NVRITNT--------------------YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 242 ~~ll~~~--------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
..+-..+ ..+..+.|...++...+.+ +.+..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 3222111 1133567788888877764 346678889999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHccCChHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHhc
Q 015673 302 GCSPNAT--TFRTWIY-HLCGSGNFDKAYKVFKESVMVH-----------------------KIPDFNTVKLLVEGLVKK 355 (403)
Q Consensus 302 ~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~ 355 (403)
...+... .+..+.. .....|+.++|+..|++.++.. -+.+..+|..+..+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4332221 2223332 3457899999999998877643 134567888899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 015673 356 KKIKEAKGVIRTIKK 370 (403)
Q Consensus 356 g~~~~a~~~~~~~~~ 370 (403)
|++++|++.|++..+
T Consensus 444 g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 444 EKMQQADEDSERGLE 458 (472)
T ss_dssp HHCC-----------
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999886
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=6.7e-16 Score=142.25 Aligned_cols=357 Identities=11% Similarity=0.079 Sum_probs=202.1
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+...|..++. +.+.|++++|..+|+++.+.. |. +...|...+..+.+.|++++|..+|+++.... |+...|..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 4455666666 356677777777777777766 43 44556667777777777777777777776432 345555544
Q ss_pred HHHH-hccCCHHHHHH----HHHHHHh-CCCCC-cHHHHHHHHHHHHh---------cCCcCcHHHHHHHchhhC-----
Q 015673 104 IRSY-GQAGMFDHAMR----TFDQMDE-LGTPR-SVISFNALLFACTR---------SRLYDKVPILFDEIPKKY----- 162 (403)
Q Consensus 104 ~~~~-~~~~~~~~A~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~----- 162 (403)
+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.++..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 4322 23344444433 4444432 12222 33444444444332 344555555555544310
Q ss_pred ---------------------------------------------------CCCCc--------hHHHHHHHHHHHhc--
Q 015673 163 ---------------------------------------------------NLSPD--------KISYGLLLKSHCDS-- 181 (403)
Q Consensus 163 ---------------------------------------------------~~~~~--------~~~~~~l~~~~~~~-- 181 (403)
.++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 01111 01122222111110
Q ss_pred --CCh----HHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCchHHH
Q 015673 182 --GSS----DKALELLNEMENKGVEVTTVTYTTVLNCLYK-------QGNAE-------EAERLWSEMEKKGVDLDVAAY 241 (403)
Q Consensus 182 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~ 241 (403)
++. +.+..+|+++... .+.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 111 2444555555554 23355666666666654 57766 788888887752122234555
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-h-hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDAGLKPD-T-ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH-L 317 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 317 (403)
..+...+ ..|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 5555555 778888888888888775 443 2 467777777777888888888888877653 2223333222222 3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--Cch-hHHHHHHHHHHhCCCC
Q 015673 318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF--PPN-VLRAWKKVEEELGLVP 391 (403)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~ 391 (403)
...|+.++|..+|++.++.. +.++..+..++..+.+.|+.++|..+|++..+.. +|+ ....|...+.....+|
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 35788888888888877654 4567778888888888888888888888887643 232 2345655444433333
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.3e-17 Score=134.40 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--Cc----hhhH
Q 015673 133 ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE--VT----TVTY 206 (403)
Q Consensus 133 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 206 (403)
..+..+...+...|++++|..+|++..+. . .+...+..+..++...|++++|.+.++++.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34555555566666666666666666554 2 45555666666666666666666666665543110 11 3566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN 285 (403)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (403)
..+..++...|++++|...++++.+.. |+.. .+ ..|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666667777777777777777766642 3321 12 4566777777777777653 22456778888889999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 286 EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
|++++|...++++.+.. +.+..++..+..++...|++++|+..++++++.. +.+...+..+..++.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999988765 4567889999999999999999999999998876 567888999999999999999999999
Q ss_pred HHHHHhC-----CchhHHHHHHHHHH
Q 015673 366 RTIKKKF-----PPNVLRAWKKVEEE 386 (403)
Q Consensus 366 ~~~~~~~-----~~~~~~~~~~l~~~ 386 (403)
++..+.. .|+....+..+.++
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9988744 26666677766554
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=2.1e-15 Score=138.97 Aligned_cols=343 Identities=7% Similarity=-0.048 Sum_probs=242.5
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHH-HHHhcCCcchHHH----HHHHhhcC-C-CC
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVR-RLAKSKRFSDIET----LIESHKND-P-KI 94 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~~~~a~~----~~~~~~~~-~-~~ 94 (403)
|.+...|...+..+.+.|++++|..+|++++... | +...|...+. .....|+++.|.+ +|+..... + .+
T Consensus 43 P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p--~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 43 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L--HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118 (530)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C--CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C--ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence 4456778889999999999999999999999987 6 3445555554 2345677777765 66665432 2 23
Q ss_pred CCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH-------------------------
Q 015673 95 TQEPYLCNLIRSYGQ---------AGMFDHAMRTFDQMDELGTPRSVISFNALLF------------------------- 140 (403)
Q Consensus 95 ~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~------------------------- 140 (403)
.+...|...+....+ .|+++.|..+|++..+.........|.....
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 456677777766544 6788888888888877311111122221111
Q ss_pred ----------------------------------------HHHhc----CCc----CcHHHHHHHchhhCCCCCchHHHH
Q 015673 141 ----------------------------------------ACTRS----RLY----DKVPILFDEIPKKYNLSPDKISYG 172 (403)
Q Consensus 141 ----------------------------------------~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ 172 (403)
..... ++. ..+..+|++.... .+.+...|.
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~ 276 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWY 276 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 00000 011 1344556666542 334566777
Q ss_pred HHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 015673 173 LLLKSHCD-------SGSSD-------KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238 (403)
Q Consensus 173 ~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (403)
..+..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+.
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~ 354 (530)
T 2ooe_A 277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDID 354 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSC
T ss_pred HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccC
Confidence 77777765 79987 89999999987324456888999999999999999999999999986 4442
Q ss_pred --HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673 239 --AAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTC-YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314 (403)
Q Consensus 239 --~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 314 (403)
..|......+ +.|+++.|..+|++..+.. +.+...|...+.. +...|+.++|..+|+...+.. +.+...|..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~ 432 (530)
T 2ooe_A 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3566666666 7899999999999998762 2222333322222 346899999999999988763 44688999999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHK-IP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
..+.+.|+.++|..+|++.+..+. .| ....|...+......|+.+.+..+.+++.+.+|.
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998742 23 2457888888888999999999999999886653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.2e-18 Score=147.95 Aligned_cols=279 Identities=10% Similarity=0.041 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
.|+.++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|+
T Consensus 16 ~~~ld~A~~fae~~~~--------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE--------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4455555555555511 124555556666666666666555432 23334555555555556666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK 197 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (403)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 555544442 2334555555555666555555544442 134445556666666666666666665543
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673 198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN 276 (403)
Q Consensus 198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (403)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+| ..|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 34555556666666666666555555 1455555555555 555665553333321 11222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCCCC------CHHHHHHH
Q 015673 277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS--GNFDKAYKVFKESVMVHKIP------DFNTVKLL 348 (403)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 348 (403)
.++..|.+.|.+++|..+++...... +-....|+-+..+|++- ++..+.++.|..- .+++| +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence 45555666666666666665555443 33444555554444442 2233333333211 12222 23345555
Q ss_pred HHHHHhcCCHHHHHH
Q 015673 349 VEGLVKKKKIKEAKG 363 (403)
Q Consensus 349 ~~~~~~~g~~~~a~~ 363 (403)
+..|.+.++++.|..
T Consensus 289 ~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 289 VFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhhchHHHHHH
Confidence 555555566555544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=4.5e-18 Score=147.04 Aligned_cols=272 Identities=11% Similarity=0.110 Sum_probs=123.1
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
.+.|++++|.+.++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 366889999999998832 248999999999999999999999763 57789999999999999999999
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 988777652 4567889999999999999999998885 367789999999999999999999999976
Q ss_pred CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673 233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR 311 (403)
Q Consensus 233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (403)
..|..+...+ +.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 3677888888 999999999999988 27899999999999999999996655442 33444566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCc-----hhHHHHHHHH
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK--FPP-----NVLRAWKKVE 384 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-----~~~~~~~~l~ 384 (403)
.++..|.+.|++++|+.+++..+... +-....|+.+.-.|++- ++++..+.++...++ .|| .....|..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998766 66778888887777764 345555555544443 333 3334666665
Q ss_pred HHhC
Q 015673 385 EELG 388 (403)
Q Consensus 385 ~~~~ 388 (403)
-.|.
T Consensus 290 ~ly~ 293 (449)
T 1b89_A 290 FLYD 293 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=161.17 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDE---LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL 174 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 174 (403)
.+|++||++|++.|++++|.++|+.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+. |+.||..||+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 4689999999999999999999988753 578899999999999999999999999999999776 999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 015673 175 LKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216 (403)
Q Consensus 175 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 216 (403)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999985 78899999999999999999999888655543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.1e-16 Score=129.12 Aligned_cols=200 Identities=14% Similarity=0.006 Sum_probs=126.5
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
|+++..+..+...+...|++++|+..|+++++.+ |. +..++..+...+.+.|++++|...+++... ..|.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQ-DPEALYWLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHH
Confidence 4455667777777777788888888887777776 43 455666777777777777777777777764 3445556667
Q ss_pred HHHHHHhcc-----------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673 102 NLIRSYGQA-----------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170 (403)
Q Consensus 102 ~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 170 (403)
.+..++... |++++|+..|++..+..+. +...+..+..++...|++++|+..|++..+. . .+...
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~ 153 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHH
Confidence 777777777 7777777777777665432 5666667777777777777777777777665 2 45666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (403)
+..+..++...|++++|...|+++.+. .+.+...+..+..++...|++++|...+++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 677777777777777777777777665 23355666666777777777777777666543
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=2.5e-14 Score=138.10 Aligned_cols=319 Identities=12% Similarity=0.083 Sum_probs=210.4
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCC-cchhhHHHHHH---------------------------HH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV-SSRYAQDLTVR---------------------------RL 72 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~~~l~~---------------------------~~ 72 (403)
.+.++......+..+...|.+.+|+++++++.-.+ ++. .....-+.++. .+
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 34455566777889999999999999999998443 111 12222233443 34
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
...|.+++|..+|++.. ......+.++ ...+++++|.++.++. -+..+|..+..++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 44555555555555542 1111112221 1445566666665544 24667777777888888888888
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
..|.+. -|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++..... +
T Consensus 1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 877654 266677778888888888888888887766653 23333445777777777777533332 2
Q ss_pred CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673 233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR 311 (403)
Q Consensus 233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (403)
.++...+..+-..+ ..|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 23444444444445 778888888888874 36777888888888888888888765 2557777
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
.+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.... ..+.....|..+...+...+
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~-LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cChhHhHHHHHHHHHHHhCC
Confidence 777778888888777776543 345677888899999999999999999988875 44666667766666665543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=7.3e-16 Score=124.40 Aligned_cols=198 Identities=13% Similarity=-0.013 Sum_probs=123.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (403)
++...+..+...+.+.|++++|...|++..+. -+.+...+..+..++.+.|++++|+..+++..+.... +...+..+-
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 44555556666666666666666666666554 2234555566666666666666666666666554311 222333333
Q ss_pred hhh-cC-----------CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673 246 TNT-YG-----------GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 246 ~~~-~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
..+ .. |++++|...+++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 333 44 77788888888777653 2246677778888888888888888888888776 677788888
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
..++...|++++|+..|+++++.. +.+...+..+..++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888888765 5667788888888888888888888887764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=158.32 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=86.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673 201 VTTVTYTTVLNCLYKQGNAEEAERLWSEMEK---KGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN 276 (403)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (403)
.-..||+++|.+|++.|++++|.++|.+|.+ .|+.||..+||++|.++ +.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456888888888888888888888877654 45677777777777777 7777777777777777777777777777
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673 277 FLMTCYCKNEMM-DEAKKVYEGLEENGCSPNATTFRTWIYHLCG 319 (403)
Q Consensus 277 ~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (403)
+||.++++.|+. ++|.++|++|.+.|+.||..+|++++..+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 777777776663 5667777777777777777777766654443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1e-15 Score=127.10 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=147.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC-CCCc----hHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPD----KISYGL 173 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 173 (403)
.+..+...+...|++++|+..|+.+.+.. .+..++..+..++...|++++|...+++..+... ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666666666666666666666555 4566666666666666666666666666554210 0011 356666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCC
Q 015673 174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGG 251 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~ 251 (403)
+...+...|++++|...|+++.+.. |+ ...+...|++++|...++.+... .|+ ...+..+...+ ..|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 7777777777777777777776642 23 23455566777777777777665 232 23333333344 777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
++++|...++++.+.. +.+..++..+..+|...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777777653 3356777788888888888888888888887764 4457778888888888888888888888
Q ss_pred HHHhC
Q 015673 332 ESVMV 336 (403)
Q Consensus 332 ~~~~~ 336 (403)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.6e-15 Score=127.07 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=129.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc--hHHHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD--KISYGLLLKS 177 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 177 (403)
+......+...|++++|+..|+.+.+..+. +...+..+..++...|++++|+..+++..+. ...++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence 344556666667777777777766664432 3445666666666666666666666666542 21111 2336666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK 257 (403)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~ 257 (403)
+...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...+++..+.. |+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~-------------------- 140 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TT-------------------- 140 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CC--------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CC--------------------
Confidence 667777777777777666642 2345566666666666777777766666665542 21
Q ss_pred HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHH
Q 015673 258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN---FDKAYKVFKESV 334 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 334 (403)
+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.
T Consensus 141 -------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 141 -------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 22222223311112224444444444444432 2223344444444444444 444555554444
Q ss_pred hCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 335 MVH-KIPD------FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 335 ~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
+.. -.|+ ..+|..+...|...|++++|.+.+++..+.. |+...+|..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 321 0111 2455556666666666666666666666533 333445554443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1.1e-15 Score=128.24 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=143.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 109 QAGMFDHAMRTFDQMDELGTP---RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|...|+++.+. .+.+...+..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 345666666666666654211 13445556666666666666666666666543 2334556666666666777777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR 264 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~ 264 (403)
+|.+.|+++.+. .+.+...+..+..++...|++++|...++++.+.. |+.......+..+ ..|++++|...++...
T Consensus 95 ~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777766664 22345666666677777777777777777766642 3333333333333 5567777777776665
Q ss_pred HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS---PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD 341 (403)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (403)
... +++...+ .++..+...++.++|...+....+.... .+...+..+...+...|++++|...|+++++.. +.+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 248 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN 248 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh
Confidence 542 2233333 3556666667777777777766543210 014566777777888888888888888877654 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 342 FNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
.. ....++...|++++|.+.+
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 22 2345666677777776655
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=5.9e-15 Score=128.75 Aligned_cols=249 Identities=8% Similarity=-0.010 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPKKYNLSPDKISYGLLLK 176 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (403)
..|..+..++...|++++|+..|+++++..+. +..+|+.+..++...|+ +++|+..|+++++. .+-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34555666666666666666666666665432 45566666666666664 66666666666542 2234455666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHH
Q 015673 177 SHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERL 256 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a 256 (403)
++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~----------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------------
Confidence 6666666666666666665542 2345555556666666666555555555555542
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHH
Q 015673 257 KELIDEMRDAGLKPDTISYNFLMTCYCK-NEMMDEA-----KKVYEGLEENGCSPNATTFRTWIYHLCGSG--NFDKAYK 328 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~ 328 (403)
+-+...|+.+..++.. .|..++| +..+++.++.. +-+...|..+...+...| ++++|++
T Consensus 231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 2244556666666666 4444555 47777777654 445667777777777777 5788888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEGLVKKK---------KIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG 388 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (403)
.+.++ +.. +.+...+..+..+|.+.| ..++|.++++++.....|.....|..+...+.
T Consensus 298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88887 333 566778888888888764 25889999998833477777778877765543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=6.7e-15 Score=123.23 Aligned_cols=252 Identities=8% Similarity=-0.020 Sum_probs=170.0
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC--HHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ--EPYLCNL 103 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 103 (403)
..+......+...|++++|+..|+.+.+.. |. +...+..+...+...|++++|...++++...+..+. ...|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 455667788888999999999999998877 43 445677788888899999999999998876321111 2236778
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
..++...|++++|+..|++..+..+. +..++..+...+...|++++|...|++..+. .+.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 88888999999999999988876543 6678888888888888888888888888753 33455666666634444558
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCchHHHHHHHhhhcCCChHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN---AEEAERLWSEMEKKGV-DLDVAAYNVRITNTYGGDPERLKEL 259 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~a~~~ 259 (403)
+++|.+.|+++.+. .+.+...+..+..++...|+ +++|...+++..+... .|+.. .
T Consensus 158 ~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~----------------- 217 (272)
T 3u4t_A 158 YVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY--K----------------- 217 (272)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG--H-----------------
T ss_pred HHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc--h-----------------
Confidence 88888888888775 23345666677777777776 6667777766654310 01100 0
Q ss_pred HHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673 260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW 313 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 313 (403)
..-..+|..+...|...|++++|...++++.+.. +.+...+..+
T Consensus 218 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 218 ---------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 0001345556666666666666666666666553 3334444333
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=7.7e-14 Score=116.89 Aligned_cols=229 Identities=13% Similarity=0.031 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHH
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYG 172 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 172 (403)
...+..+...+...|++++|+..|++..+. -+..++..+...|.. .+++++|...|++..+. + +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 334445555555555555555555555551 233444445555555 55555555555555432 1 344444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 173 LLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 173 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. ..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-------------------------------~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD-------------------------------GK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-------------------------------CS
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc-------------------------------CC
Confidence 45555554 555555555555554432 33444444444444 00
Q ss_pred -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 015673 249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG---- 319 (403)
Q Consensus 249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 319 (403)
..+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 0455555555555554443 33445555555555 667777777777766653 44556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCch
Q 015673 320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.+++++|+..|++..+.+ +...+..+...|.+ .+++++|.+.+++..+..+++
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777777776654 25566666777777 777777777777776654443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=3.9e-15 Score=123.21 Aligned_cols=200 Identities=6% Similarity=-0.102 Sum_probs=115.7
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+...|++++|++.|+++.+.. |. ...++..++..+...|++++|.+.++++... .+.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS-SADAHAALAVVFQTEMEPKLADEEYRKALAS-DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHH
Confidence 345555566666666666666666666655 32 3445555666666666666666666665532 2334455555666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (403)
++...|++++|++.|+++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 6666666666666666665521222 3445555566666666666666666666543 123455556666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
++|...++.+.+. .+.+...+..+..++...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666554 2234455555566666666666666666666554
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=2.5e-14 Score=118.31 Aligned_cols=202 Identities=10% Similarity=-0.018 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT- 248 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~- 248 (403)
.+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+... .+...+..+...+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 34444444445555555555555444431 22344444455555555555555555555544321 1223333333333
Q ss_pred cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
..|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554421223 34566677778888888888888888877664 445777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..++++.+.. +.+...+..+...+...|++++|.+.++++.+..|.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 8888887754 5667778888888888888888888888888755544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=2.6e-15 Score=123.49 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
..|..+...+...|++++|...|+++.+. .+.+...+..+..++...|++++|...++++.+... .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 33444455555555555555555555543 222444555555555555555555555555554421 1233333333333
Q ss_pred -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673 249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY 327 (403)
Q Consensus 249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 327 (403)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666555543 2345567777777888888888888888877654 446777778888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV 383 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (403)
..++++.+.. +.+..++..+..+|...|++++|...++++.+..|.+ ...|..+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~ 233 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH-MLALHAK 233 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch-HHHHHHH
Confidence 8888887765 5567788888888888888888888888887744433 3355443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=3e-14 Score=115.45 Aligned_cols=205 Identities=10% Similarity=-0.047 Sum_probs=151.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (403)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45566777777777777777777777776652 33566777777777777788888777777776532 23444444444
Q ss_pred hh-cC-CChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673 247 NT-YG-GDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF 323 (403)
Q Consensus 247 ~~-~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (403)
.+ .. |++++|...++.+.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55 77 788888888887776222232 5667778888889999999999999888764 44577888888899999999
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 324 DKAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+..|.+
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 99999999988765 4 677778888888889999999999999887755444
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2.2e-16 Score=132.52 Aligned_cols=255 Identities=12% Similarity=-0.009 Sum_probs=132.1
Q ss_pred hhhccCChHHHHHHHHHhhhccCC-CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYAS-PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM 112 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (403)
.+...|++++|+..|+.+.+.... ++....++..++..+...|++++|...|+++.. ..+.+...+..+..++...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHccC
Confidence 445567777777777777765311 112445556666677777777777777776653 233445556666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 015673 113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN 192 (403)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (403)
+++|+..|+++.+..+. +..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++
T Consensus 93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666666666654322 4455555555555555555555555555432 1222222223333334455555555554
Q ss_pred HHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh
Q 015673 193 EMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDT 272 (403)
Q Consensus 193 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (403)
+.... .+++...+ .++..+...++.++|...+....+.. |.. .+.+.
T Consensus 169 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-----------------------------~~~~~ 215 (275)
T 1xnf_A 169 QHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSL-----------------------------AEHLS 215 (275)
T ss_dssp HHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHH-----------------------------HHHHH
T ss_pred HHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccc-----------------------------ccccc
Confidence 44433 12222222 23333444444444444444433221 000 00013
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVF 330 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (403)
..+..+..+|...|++++|...|+++.+.. |+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 556666777777777777777777777653 321 222244556666777766655
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=8.9e-14 Score=116.53 Aligned_cols=222 Identities=10% Similarity=-0.065 Sum_probs=164.7
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFN 136 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 136 (403)
+..++..+...+...|++++|...|++... +.+...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 556777889999999999999999999986 3455677889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673 137 ALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTT 208 (403)
Q Consensus 137 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (403)
.+...|.. .+++++|+..|++..+. + +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999 99999999999999875 3 77888999999999 999999999999998875 4566777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c----CCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 015673 209 VLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y----GGDPERLKELIDEMRDAGLKPDTISYNFLM 279 (403)
Q Consensus 209 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 279 (403)
+...|.. .+++++|...|++..+.+ +...+..+-..+ . .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777 778888888887776653 222222222222 3 455555555555555442 133444444
Q ss_pred HHHHh----cCChHHHHHHHHHHHHC
Q 015673 280 TCYCK----NEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 280 ~~~~~----~~~~~~A~~~~~~~~~~ 301 (403)
..|.. .+++++|...|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45544 45555555555555444
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=1.3e-15 Score=125.22 Aligned_cols=205 Identities=10% Similarity=-0.004 Sum_probs=152.9
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL 100 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (403)
....+..+..+...+...|++++|+..|+++.+.. |. +...+..++..+...|++++|...++++... .+.+...+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 94 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE-DAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAY 94 (243)
T ss_dssp -----------------------CCTTHHHHHTTC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHH
Confidence 33455667778888999999999999999999877 43 5667788889999999999999999998753 44567778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..+..++...|++++|++.|+++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 8899999999999999999999888654 36778888889999999999999999998764 34467788888999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
.|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999988763 3467788889999999999999999999988863
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1.1e-14 Score=118.00 Aligned_cols=202 Identities=10% Similarity=-0.050 Sum_probs=119.0
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...+..++..+...|++++|++.|+.+.+.. |. +...+..++..+...|++++|...++++... .+.+...+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK-NELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHH
Confidence 4455666666667777777777777776665 32 3445556666666667777777666666532 333455566666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 105 RSYGQA-GMFDHAMRTFDQMDELGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 105 ~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
.++... |++++|+..++.+.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 666666 66666666666666522112 2455556666666666666666666666542 2233555566666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666655421134445555555556666666666666665543
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.7e-14 Score=125.80 Aligned_cols=167 Identities=10% Similarity=-0.033 Sum_probs=143.0
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALL 139 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll 139 (403)
...+|..+...+...|++++|+..++++.. ..+.+...|+.+..++...|+ +++|+..|+++.+..+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 456678888999999999999999999985 556677889999999999997 99999999999997765 788999999
Q ss_pred HHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCC
Q 015673 140 FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGN 218 (403)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~ 218 (403)
.++...|++++|+..|+++++. -+-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999873 34577889999999999999999999999999874 3478899999999988 565
Q ss_pred HHHHH-----HHHHHHHHc
Q 015673 219 AEEAE-----RLWSEMEKK 232 (403)
Q Consensus 219 ~~~a~-----~~~~~~~~~ 232 (403)
.++|. ..+++.+..
T Consensus 251 ~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 57763 556666554
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.8e-13 Score=124.18 Aligned_cols=304 Identities=12% Similarity=0.004 Sum_probs=215.0
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhc--------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKN--------DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-----G 127 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 127 (403)
....|+.+...+...|++++|++.|++... ...+....+|..+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788999999999999999999988643 123445567889999999999999999999887542 1
Q ss_pred -CC-CcHHHHHHHHHHHHh--cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC
Q 015673 128 -TP-RSVISFNALLFACTR--SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS---HCDSGSSDKALELLNEMENKGVE 200 (403)
Q Consensus 128 -~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 200 (403)
.. ....++..+..++.. .+++++|+..|++..+. .|-+...+..+..+ +...++.++|++.+++..+.+ +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 134566666555554 45789999999999864 22334444444444 445678889999999988763 3
Q ss_pred CchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcH
Q 015673 201 VTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISY 275 (403)
Q Consensus 201 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (403)
.+..++..+...+.. .|++++|.+.+++...... .+...+..+-..+ ..|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 456666666655554 4678899999999888743 3444555555556 9999999999999998873 3345566
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 276 NFLMTCYCKN-------------------EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 276 ~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
..+..+|... +..+.|...++...+.. +.+...+..+...+...|++++|+..|++.++.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666655432 33567888888877664 445567888999999999999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 015673 337 HKIPDFN--TVKLLVE-GLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 337 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 370 (403)
...+... .+..+.. .+...|++++|+..+++..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6333221 2333332 34578999999999988876
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=2.2e-14 Score=128.99 Aligned_cols=313 Identities=11% Similarity=0.003 Sum_probs=147.1
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCc---chHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRF---SDIETLIESHKNDPKITQEPYLCNLIRS 106 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (403)
.+...+.+.|++++|+++|+.+.+.+ +..++..+...+...|+. ++|...|++.... +...+..|...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 46677788899999999999998876 233445566677777887 8999999988743 34445566664
Q ss_pred HhccC-----CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC---cHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673 107 YGQAG-----MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD---KVPILFDEIPKKYNLSPDKISYGLLLKSH 178 (403)
Q Consensus 107 ~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (403)
+...+ ++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+...... + +...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence 54544 788999999999886643 25666666666655433 334444443322 2 233444455555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh----cCC
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG---NAEEAERLWSEMEKKGVDLDVAAYNVRITNT----YGG 251 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 251 (403)
...+.++.+......+.+.-...++..+..+...|...| +.++|+..|++..+.|.......++...... ..+
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 555533333332222211111112235555555555555 5555555555555554222111122111111 124
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----Ch
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTC-Y--CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG-----NF 323 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 323 (403)
++++|...|++.. .| +...+..|... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 5555555555554 22 33344444444 2 24555555555555555543 3444444444444 33 55
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 015673 324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKK 370 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 370 (403)
++|++.|++.. +-++..+..|...|.. ..++++|...|++..+
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 55555555544 2234444444444444 2255555555555544
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1.3e-13 Score=133.20 Aligned_cols=310 Identities=11% Similarity=0.101 Sum_probs=219.3
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
...+...+...|.+++|..+|++... ...+.+.++ ...+++++|.++.+++. +..+|..+..++
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHH
Confidence 34467788889999999999999732 112222232 27788999999988663 366788999999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (403)
...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+. . ++....+.++.+|++.+++++.
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHHHH
Confidence 9999999999999664 47788888999999999999999999887653 2 3333344588888888888854
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
..++ + .++...|..+...|...|++++|...|... ..|..+...+ +.|+++.|.+.+++..
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-- 1248 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-- 1248 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--
Confidence 4332 2 235567777888999999999999999885 2566777777 8889999999888762
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346 (403)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (403)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+
T Consensus 1249 ----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A 1249 ----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred ----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence 5678888888888888888887766542 3456667788888888888888888888777554 44455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCc-----hhHHHHHHHHHHhCCCC
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIKKK--FPP-----NVLRAWKKVEEELGLVP 391 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-----~~~~~~~~l~~~~~~~~ 391 (403)
.+...|.+. ++++..+.++-..++ .|+ .....|..+...|...+
T Consensus 1319 ELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1319 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 666666653 233333333333332 333 33446666665554443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=1.9e-14 Score=128.18 Aligned_cols=272 Identities=14% Similarity=-0.026 Sum_probs=145.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCCcCcHHHHHHHchhhC---C-CCCchHHHHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSV----ISFNALLFACTRSRLYDKVPILFDEIPKKY---N-LSPDKISYGLL 174 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l 174 (403)
+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|...+++..+.. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 333444444444444444444443211 11 233444444444444444444444433210 0 01122344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----C-CCCchhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc
Q 015673 175 LKSHCDSGSSDKALELLNEMENK----G-VEVTTVTYTTVLNCLYKQGN-----------------AEEAERLWSEMEKK 232 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~ 232 (403)
...|...|++++|...++++.+. + .+....++..+..+|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555544332 0 11122344555555555555 55555555544331
Q ss_pred ----CCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC-CC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 233 ----GVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLK-PD----TISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 233 ----~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
+..+. ...+..+...+ ..|++++|...+++..+.... ++ ...+..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11111 11222233333 556666666666655432100 01 236777888888999999999988887643
Q ss_pred CC-CC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 302 GC-SP----NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-----IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 302 ~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
.. .. ...++..+...+...|++++|...+++.+.... .....++..+..+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 10 01 145677788888999999999999988775411 112457778888999999999999999998875
Q ss_pred CCch
Q 015673 372 FPPN 375 (403)
Q Consensus 372 ~~~~ 375 (403)
.+..
T Consensus 373 ~~~~ 376 (411)
T 4a1s_A 373 AXXX 376 (411)
T ss_dssp CCHH
T ss_pred Hhhc
Confidence 5433
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=4.1e-15 Score=132.13 Aligned_cols=316 Identities=11% Similarity=0.013 Sum_probs=160.6
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----CC-CCC
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----PK-ITQ 96 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 96 (403)
...+......+...|++++|+..|+.+.+.. |... ..++..+...+...|++++|...+++.... +. +..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566777777788888888888777765 4322 245566677777777777777777765321 11 111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY 171 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 171 (403)
...+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|+...+... ..+. .. +.. .
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~---~~-~~~-a- 159 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP-QDVG---EF-PEE-V- 159 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--------C---CC-CHH-H-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc-chhh---hh-hhh-H-
Confidence 234555666667777777777777666542100 01 22445555555555550000000 0000 00 000 0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----hHHH
Q 015673 172 GLLLKSHCDSGSSDKALELLNEMENK----GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD-LD----VAAY 241 (403)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 241 (403)
...+++|.+.+++..+. +. +....++..+..+|...|++++|...+++..+.... ++ ...+
T Consensus 160 ---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 230 (406)
T 3sf4_A 160 ---------RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 230 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 00044444444333221 00 011233444555555555555555555554432100 01 1122
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHC----CCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDA----GLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTF 310 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 310 (403)
..+...+ ..|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++
T Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2222233 555555555555554322 1000 134566777778888888888888877654210 111 4466
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 015673 311 RTWIYHLCGSGNFDKAYKVFKESVMV----HK-IPDFNTVKLLVEGLVKKKKI 358 (403)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 358 (403)
..+...+...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 77777888888888888888876653 11 12234566667777777665
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=3e-14 Score=126.53 Aligned_cols=291 Identities=12% Similarity=-0.025 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhh---CCCCC-chH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS----VISFNALLFACTRSRLYDKVPILFDEIPKK---YNLSP-DKI 169 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~ 169 (403)
..+......+...|++++|+..|+++.+.+.. + ...+..+...+...|++++|...+++.... .+..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455666667777777777777777665422 2 245666666777777777777777665432 11111 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhhHHHHHHHHHhcCC--------------------HHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVTYTTVLNCLYKQGN--------------------AEEAER 224 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------------~~~a~~ 224 (403)
++..+...+...|++++|...+++..+... .....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677778888888888888888887754310 1113477888888999999 999999
Q ss_pred HHHHHHHc----CCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCC----hhcHHHHHHHHHhcCChHHHHH
Q 015673 225 LWSEMEKK----GVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGL-KPD----TISYNFLMTCYCKNEMMDEAKK 293 (403)
Q Consensus 225 ~~~~~~~~----~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~ 293 (403)
.+.+..+. +..+. ...+..+...+ ..|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88876543 11122 22344444445 88999999999998865311 112 2378888999999999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHH
Q 015673 294 VYEGLEENGC-SPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI-P----DFNTVKLLVEGLVKKKKIKEAKG 363 (403)
Q Consensus 294 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~ 363 (403)
.+++..+... .++ ..++..+...+...|++++|...+++..+.... . ...++..+..+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764310 112 457788889999999999999999998764211 1 15677889999999999999999
Q ss_pred HHHHHHHh---C--CchhHHHHHHHHHHhCC
Q 015673 364 VIRTIKKK---F--PPNVLRAWKKVEEELGL 389 (403)
Q Consensus 364 ~~~~~~~~---~--~~~~~~~~~~l~~~~~~ 389 (403)
.+++..+. . ++.....+..+...+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99998652 2 33344455555555433
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=3.5e-15 Score=132.95 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=152.3
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----C-CCCCHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----P-KITQEP 98 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 98 (403)
.+..+...+...|++++|+..|+++.+.. |... ..++..+...+...|++++|...+++.... + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34456667777788888888888777765 4322 135666777777777777777777766431 1 112223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHhcCC-----------------cCcHHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG-----TPRSVISFNALLFACTRSRL-----------------YDKVPILFD 156 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 156 (403)
.+..+...|...|++++|+..|+++.+.. .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45667777777777777777777665421 01123345555566666666 555555555
Q ss_pred HchhhC---CC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673 157 EIPKKY---NL-SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VT----TVTYTTVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 157 ~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (403)
+..+.. +. +....++..+...+...|++++|.+.+++..+.... .+ ...+..+..+|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 443210 00 011224444555555555555555555554332100 00 1134444445555555555555554
Q ss_pred HHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 015673 228 EMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGL-KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----G 302 (403)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~ 302 (403)
+...... ..+. .....++..+...|...|++++|...+++..+. +
T Consensus 288 ~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 288 RTLALAV------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4433200 0000 001345666777777777777777777776532 1
Q ss_pred C-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 303 C-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 303 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
. .....++..+...+...|++++|...+++..+..
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 0 0113366667777788888888888888777643
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.2e-12 Score=111.54 Aligned_cols=231 Identities=8% Similarity=0.024 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcc----CCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-------cCCc-------CcHHHHH
Q 015673 98 PYLCNLIRSYGQA----GMF----DHAMRTFDQMDELGTPRSVISFNALLFACTR-------SRLY-------DKVPILF 155 (403)
Q Consensus 98 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~ 155 (403)
..|...+....+. ++. ++|..+|+++....+ -+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3455555554332 232 566677777766443 256666666666543 3554 5666666
Q ss_pred HHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 156 DEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT-TV-TYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
++..+ .+.| +...|..++..+.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus 88 ~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 88 ERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66654 1233 3345666666666666666666666666653 222 22 5666666666666666666666666554
Q ss_pred CCCCchHHHHHHHhh-h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CH
Q 015673 233 GVDLDVAAYNVRITN-T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG-CSP--NA 307 (403)
Q Consensus 233 ~~~~~~~~~~~ll~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~ 307 (403)
.. ++...|...... + ..|+++.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++| ..
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 21 111112111111 0 1344444444444444331 1133344444444444444444444444444431 122 23
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 308 TTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
..|..++......|+.++|..+++++.+
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=4.8e-13 Score=114.08 Aligned_cols=218 Identities=7% Similarity=0.005 Sum_probs=127.1
Q ss_pred HHHHHHHHHhhhccCCCCcchhhHHHHHHHHH-------hcCCc-------chHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLA-------KSKRF-------SDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
++|+.+|++++... |. +...|..++..+. ..|++ ++|..+|++......+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67788888888877 43 4555666666554 34665 67777777776433445555677777777
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH-hcCChH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVI-SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC-DSGSSD 185 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 185 (403)
.+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777764321 232 6666666666677777777777776542 2233333433322221 246666
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc--hHHHHHHHhhh-cCCChHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLD--VAAYNVRITNT-YGGDPERLKELID 261 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~-~~~~~~~a~~~~~ 261 (403)
+|.++|++..+. .+.+...|..++..+.+.|++++|..+|++..... ..|+ ...|...+... ..|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666554 22345566666666666666666666666666542 2321 23333333333 4455555555555
Q ss_pred HHHHC
Q 015673 262 EMRDA 266 (403)
Q Consensus 262 ~~~~~ 266 (403)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=4.1e-13 Score=120.67 Aligned_cols=323 Identities=17% Similarity=0.071 Sum_probs=201.5
Q ss_pred chhHHHHHhhhhccCCh---HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC-----CcchHHHHHHHhhcCCCCCC
Q 015673 25 SISVSKAKSKLRSEFDP---DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK-----RFSDIETLIESHKNDPKITQ 96 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~---~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 96 (403)
+..+..+...+...|++ ++|++.|++..+.. | .++..+...+...+ ++++|...|++....+.+.
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~--~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~- 107 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS--P----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN- 107 (452)
T ss_dssp CTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS-
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC--H----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH-
Confidence 34555666677777888 89999999998652 3 34456666555554 6788999999988644433
Q ss_pred HHHHHHHHHHHhccCCHH---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH
Q 015673 97 EPYLCNLIRSYGQAGMFD---HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL 173 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 173 (403)
.+..|...|...+..+ ++.+.+......| +...+..|...|...+.++++......+.+. -...+...+..
T Consensus 108 --A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~-a~~~~~~a~~~ 181 (452)
T 3e4b_A 108 --TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKA-ALNTTDICYVE 181 (452)
T ss_dssp --CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH-HTTTCTTHHHH
T ss_pred --HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHcCCHHHHHH
Confidence 4566777777665443 3455555555443 4566777778888888776665553333222 12223447888
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673 174 LLKSHCDSG---SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ----GNAEEAERLWSEMEKKGVDLDVAAYNVRIT 246 (403)
Q Consensus 174 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (403)
+...|...| ++++|++.|++..+.|. ++...+..+...|... +++++|+..|++.. .|. ....++....
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~--~~a~~~Lg~~ 257 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY--PASWVSLAQL 257 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS--THHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC--HHHHHHHHHH
Confidence 888888899 88999999999988864 3555556677777554 68999999999987 432 1222222221
Q ss_pred ---hhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673 247 ---NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE-----MMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318 (403)
Q Consensus 247 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (403)
....+++++|...|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..+...|.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYR 329 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHH
Confidence 126789999999999998876 6667777887777 45 8999999999887 43 6667777777776
Q ss_pred c----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCch
Q 015673 319 G----SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 319 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 375 (403)
. ..+.++|..+|++..+.|. +.....|...|.. ..++++|...++...+...++
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 6 3489999999999888763 3344556666654 457888888888876654444
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=4e-14 Score=122.12 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=86.2
Q ss_pred cCCChHHHHHHHHHHHHCCC-CC----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGL-KP----DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTFRTWIYHLC 318 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 318 (403)
..|++++|...+++..+... .+ ...++..+...+...|++++|...+++..+... ..+ ..++..+...+.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 55666666666665543210 00 123677788888899999999999988764210 112 456777888899
Q ss_pred ccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 319 GSGNFDKAYKVFKESVMVHK-----IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
..|++++|...++++.+... .....++..+...|.+.|++++|...+++..+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999988765421 112446778889999999999999999998763
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=1.1e-13 Score=121.91 Aligned_cols=302 Identities=8% Similarity=-0.020 Sum_probs=168.9
Q ss_pred hhccCChHHHHHHHHHhhhccCC--CCcchhhHHHHHH--HHHhcCCcchHH-----------HHHHHhhcCCCCCCHHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYAS--PVSSRYAQDLTVR--RLAKSKRFSDIE-----------TLIESHKNDPKITQEPY 99 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~~~l~~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 99 (403)
..+.+++++|..+++.+.+.-.. ...+...|..++. ...-.+.++.+. +.++.+..... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence 34688999999999998664411 1222222222221 111223333333 55555542111 1111
Q ss_pred H------HHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-
Q 015673 100 L------CNLIRSYGQAGMFDHAMRTFDQMDEL----GTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD- 167 (403)
Q Consensus 100 ~------~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 167 (403)
+ ......+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+...-.++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 22555666778888888888777653 1111 2345666667777777777777777666543211111
Q ss_pred ----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 015673 168 ----KISYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238 (403)
Q Consensus 168 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (403)
..+++.+..+|...|++++|.+.+++..+... .....++..+..+|...|++++|...+++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~------ 253 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV------ 253 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 24566666667777777777776666543210 001135555666666666666666666655441
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHCCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 015673 239 AAYNVRITNTYGGDPERLKELIDEMRDAGL-KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----GCSPNATTFRTW 313 (403)
Q Consensus 239 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l 313 (403)
. ...+. +....++..+...|.+.|++++|...+++..+. +-+.....+..+
T Consensus 254 ---------------------~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 254 ---------------------F---EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp ---------------------H---HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------H---HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 01111 112445666777777777777777777776532 111112234556
Q ss_pred HHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 314 IYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 314 ~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
...+...|+ +++|+.++++.. ..+.....+..+...|...|++++|...+++..+
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667777777 677777776651 2123345666778888888888888888888764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=2.7e-14 Score=123.18 Aligned_cols=277 Identities=12% Similarity=0.007 Sum_probs=149.3
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----C-CCCCH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----P-KITQE 97 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 97 (403)
..+......+...|++++|+..|+++.+.. |... ...+..+...+...|++++|.+.+++.... + .+...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345555667777777777777777777765 4322 245556667777777777777777765421 1 11112
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCC--------------------cCcHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRL--------------------YDKVP 152 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 152 (403)
..+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34455666666667777777666665442100 11 2244455555555555 44444
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
..+++..... ...+ .+....++..+...+...|++++|...+++..+
T Consensus 164 ~~~~~a~~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 164 DLYEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHHHH--------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444332110 0000 001123444445555555555555555555433
Q ss_pred cCCC-Cc----hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCC----hhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673 232 KGVD-LD----VAAYNVRITNT-YGGDPERLKELIDEMRDAGL-KPD----TISYNFLMTCYCKNEMMDEAKKVYEGLEE 300 (403)
Q Consensus 232 ~~~~-~~----~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 300 (403)
.... ++ ...+..+...+ ..|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2100 00 11222222233 55556666555555443210 001 34567777888888899888888887764
Q ss_pred C----CCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673 301 N----GCS-PNATTFRTWIYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 301 ~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
. +.. ....++..+...+...|++++|...+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2 101 11346677888888899999999999888764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=5.1e-13 Score=104.68 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282 (403)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (403)
.+|..+..+|...|++++|+..|++..+... .+...+..+...+ ..|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 3444444444444444444444444444321 1222222222222 4444444444444444432 22344455555666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673 283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362 (403)
Q Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (403)
...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 66677777777777666553 3455666667777777777777777777776655 556667777777777777777777
Q ss_pred HHHHHHHH
Q 015673 363 GVIRTIKK 370 (403)
Q Consensus 363 ~~~~~~~~ 370 (403)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777766
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=5.4e-13 Score=120.68 Aligned_cols=213 Identities=10% Similarity=-0.017 Sum_probs=177.0
Q ss_pred cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
+++++..++.... ..+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456666666543 3344778889999999999999 99999999998863 346788999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHhhh-cC---------CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc--------CCh
Q 015673 227 SEMEKKGVDLDVAAYNVRITNT-YG---------GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN--------EMM 288 (403)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~-~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 288 (403)
++..+.. |+...+..+-..+ .. |++++|...+++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999874 5556666666666 77 99999999999998874 33677888999999988 999
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673 289 DEAKKVYEGLEENGCS---PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 289 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (403)
++|...|++..+.. + .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999863 3 478899999999999999999999999998876 567788899999999999999998766
Q ss_pred HHH
Q 015673 366 RTI 368 (403)
Q Consensus 366 ~~~ 368 (403)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=3.5e-13 Score=105.62 Aligned_cols=165 Identities=14% Similarity=0.018 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
..|..+...+...|++++|++.|++... ..|.+...+..+..++.+.|++++|+..+......... +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLK-ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 3344445555555555555555555442 22333444444555555555555555555554443322 344444444445
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
...++++.+...+.+..+. .+.+...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555555555554432 22234445555555555555555555555555542 23445555555555555555555
Q ss_pred HHHHHHHHHc
Q 015673 223 ERLWSEMEKK 232 (403)
Q Consensus 223 ~~~~~~~~~~ 232 (403)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.5e-13 Score=117.19 Aligned_cols=251 Identities=12% Similarity=0.095 Sum_probs=169.6
Q ss_pred CCCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673 15 TAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
...+...+.....+..+...+...|++++|+.+|+++.+.. ..+.....++..+...+...|++++|...+++..
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455566778889999999999999999999998741 0123356677889999999999999999999886
Q ss_pred cC------C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCcHHHHHHHHHHHHhcCCcCcHHHHH
Q 015673 90 ND------P-KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL------GT-PRSVISFNALLFACTRSRLYDKVPILF 155 (403)
Q Consensus 90 ~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 155 (403)
.. . .+.....+..+...+...|++++|...|+++.+. +. +.....+..+...+...|++++|..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43 1 2333456788999999999999999999998764 21 224566888889999999999999999
Q ss_pred HHchhhC------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCchh-------hHHHHHHHHHh
Q 015673 156 DEIPKKY------NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK-------GVEVTTV-------TYTTVLNCLYK 215 (403)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~ll~~~~~ 215 (403)
+++.+.. ..+....++..+..+|...|++++|.+.++++.+. ...+... .+..+...+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 9987531 12223457888999999999999999999998753 1111111 12222233334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
.+.+.++...+....... +.....+..+...+ ..|++++|...+++..+.
T Consensus 257 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445555666666655431 22344455555556 889999999999887654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=4.5e-13 Score=118.11 Aligned_cols=117 Identities=8% Similarity=-0.000 Sum_probs=85.3
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCCCHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEEN----GC-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH----KIPDFN 343 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 343 (403)
.++..+..+|...|++++|...+++..+. +. +....++..+...+...|++++|...+++..+.. .+....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46778999999999999999999998762 32 3345678889999999999999999999987642 122233
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 344 TVKLLVEGLVKKKK---IKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 344 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
.+..+...+...|+ +++|..++++. ...|+....+..+...+...+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCC
Confidence 45678888889999 77777777766 244454555555555554444
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.8e-14 Score=120.34 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=22.4
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 317 LCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+...+.+.++...++...... +....++..+..+|.+.|++++|.+.+++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444555555555544322 23345555566666666666666666666544
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-12 Score=114.51 Aligned_cols=316 Identities=11% Similarity=-0.050 Sum_probs=170.8
Q ss_pred ccchhHHHHHhhh--hccCChHHHHHHHHHhhhcc--CCCCcchhhHHHHHHH--HHhcCCcchHH---------HHHHH
Q 015673 23 ASSISVSKAKSKL--RSEFDPDKALDIYSSVSKHY--ASPVSSRYAQDLTVRR--LAKSKRFSDIE---------TLIES 87 (403)
Q Consensus 23 ~~~~~~~~l~~~l--~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 87 (403)
|+...-..+-..+ ...+++++|..+++++.+.. .........|..++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3344444444455 67889999999998875533 1111122222222221 11123333333 55555
Q ss_pred hhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673 88 HKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-R----SVISFNALLFACTRSRLYDKVPILFDEI 158 (403)
Q Consensus 88 ~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 158 (403)
+.....+.+.. .+......+...|++++|+..|++..+.... + ...++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 53211111110 1223445556777777777777776543110 1 2345566666677777777777766665
Q ss_pred hhhCCCCC-----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 159 PKKYNLSP-----DKISYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 159 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
.+...-.+ ...+++.+..+|...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 54211111 1345566666667777777777766665442 111 1123455566666666666666666665
Q ss_pred HHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC
Q 015673 229 MEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG----CS 304 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~ 304 (403)
..+. ++.. . .+....++..+...|.+.|++++|...+++..+.. -+
T Consensus 248 al~~---------------------------~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 248 AAKV---------------------------SREK--V-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp HHHH---------------------------HHHH--C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred HHHH---------------------------HHhh--C-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 5441 0000 1 12224556667777778888888888887766431 11
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.....+..+...+...++ +.+|+..+++.. ..+.....+..+...|...|++++|...+++..+
T Consensus 298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123345555556666677 677777776521 2123345566778888888888888888887754
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=4.6e-13 Score=121.12 Aligned_cols=214 Identities=9% Similarity=-0.073 Sum_probs=126.8
Q ss_pred cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673 78 FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMF-DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156 (403)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 156 (403)
++++...++... ...+.+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555665554 23345566666777777777777 7777777777665532 46677777777777777777777777
Q ss_pred HchhhCCCCCchHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc--------CCH
Q 015673 157 EIPKKYNLSPDKISYGLLLKSHCDS---------GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ--------GNA 219 (403)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~ 219 (403)
+..+ ..|+...+..+...+... |++++|.+.|++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 7763 345566677777777777 77777777777776652 33556666666666666 556
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
++|+..|++..+.. |. ...+...|..+..+|...|++++|...|++..
T Consensus 238 ~~A~~~~~~al~~~--p~------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 238 QQALSAYAQAEKVD--RK------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHHC--GG------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CC------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666555542 20 00134445555555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673 300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVF 330 (403)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 330 (403)
+.. +.+...+..+..++...|++++|++.+
T Consensus 286 ~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 286 ALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 442 223444445555555555555555444
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=1.2e-11 Score=108.60 Aligned_cols=299 Identities=10% Similarity=0.020 Sum_probs=168.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHH
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALL 139 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll 139 (403)
...+...|++++|...+++........+.. .+..+...+...|++++|...+++....... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344445566666666665554322212111 2344555566666666666666665432100 11 12244555
Q ss_pred HHHHhcCCcCcHHHHHHHchhhC---CCC--C-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CchhhHHHH
Q 015673 140 FACTRSRLYDKVPILFDEIPKKY---NLS--P-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVE----VTTVTYTTV 209 (403)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l 209 (403)
..+...|++++|...+++..+.. +.+ | ....+..+...+...|++++|...+++....... .....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 56666777777777666654321 111 2 2344556667777778888888777776543211 122456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHH----HHHhhh-cCCChHHHHHHHHHHHHCCCCCC---hhcHHHHH
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLD--VAAYN----VRITNT-YGGDPERLKELIDEMRDAGLKPD---TISYNFLM 279 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 279 (403)
...+...|++++|...+++.......++ ..... .....+ ..|++++|...++........+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7777788888888888877765321111 11111 111223 77888888888877654321111 12356677
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673 280 TCYCKNEMMDEAKKVYEGLEEN----GCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK 354 (403)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (403)
..+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++.....-+ .-.+..+..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~~~~ 334 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISHFVI 334 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHHHHH
Confidence 7888889999999988887532 211222 25556677888899999999988887653200 012233444
Q ss_pred cCCHHHHHHHHHHHHHhCCch
Q 015673 355 KKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.| +....+++.+.+..+.+
T Consensus 335 ~g--~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 335 EG--EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp TH--HHHHHHHHHHHHTTCSC
T ss_pred cc--HHHHHHHHHHHhCCCCc
Confidence 44 56666777776644443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=2.3e-11 Score=106.70 Aligned_cols=270 Identities=12% Similarity=-0.016 Sum_probs=191.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHHH
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVI----SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISYG 172 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 172 (403)
......+...|++++|...+++........+.. +++.+...+...|++++|...+++......-..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345566778999999999999987754332322 4666777888999999999999987653111112 23466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----chHHH
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENK----GVE--V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL----DVAAY 241 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 241 (403)
.+...+...|++++|...+++..+. +.. | ....+..+..++...|++++|...+++........ ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7888899999999999999987653 221 2 33456778889999999999999999987653221 12334
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh-hcHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHH
Q 015673 242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDT-ISYN-----FLMTCYCKNEMMDEAKKVYEGLEENGCSP---NATTFR 311 (403)
Q Consensus 242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 311 (403)
..+...+ ..|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 4444444 889999999999998754212221 1122 23344779999999999999987543211 133566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESVMV----HKIPDF-NTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+...+...|++++|...+++.... +..++. .++..+..++...|++++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788899999999999999887653 212222 3667778889999999999999998865
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1.3e-11 Score=108.42 Aligned_cols=215 Identities=9% Similarity=-0.020 Sum_probs=129.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC--C---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-chHHHH
Q 015673 174 LLKSHCDSGSSDKALELLNEMENKGV--E---VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-----DL-DVAAYN 242 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~ 242 (403)
....+...|++++|...|+++.+... + ....++..+..+|...|+++.|...+.+..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445555666666666665543210 0 1123455555566666666666666555543210 00 112233
Q ss_pred HHHhhh-cCCChHHHHHHHHHHHHC----CCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 015673 243 VRITNT-YGGDPERLKELIDEMRDA----GLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEE-----NGCSPNATTFR 311 (403)
Q Consensus 243 ~ll~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 311 (403)
.+-..+ ..|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 333333 566666666666555432 1111 234677889999999999999999999876 43 33367888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673 312 TWIYHLCGSGNFDKAYKVFKESVMVH----KIPDFNTVKLLVEGLVKKKK---IKEAKGVIRTIKKKFPPNVLRAWKKVE 384 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 384 (403)
.+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +++|...+++. ...|+....+..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Confidence 89999999999999999999988752 12234456666677777888 77777777763 23445445555565
Q ss_pred HHhCCCC
Q 015673 385 EELGLVP 391 (403)
Q Consensus 385 ~~~~~~~ 391 (403)
..+...+
T Consensus 344 ~~y~~~g 350 (378)
T 3q15_A 344 AVFESSC 350 (378)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 5554444
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=6e-12 Score=98.39 Aligned_cols=166 Identities=14% Similarity=0.035 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015673 62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA 141 (403)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (403)
...+..++..+...|++++|...++++.. ..+.+...+..+...+...|++++|...++.+.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 34455566666677777777777777653 3334555666677777777777777777777766543 256666677777
Q ss_pred HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673 142 CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 221 (403)
+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777653 33455667777777777777777777777776652 3456677777777777777777
Q ss_pred HHHHHHHHHHc
Q 015673 222 AERLWSEMEKK 232 (403)
Q Consensus 222 a~~~~~~~~~~ 232 (403)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777776654
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=5.7e-10 Score=103.94 Aligned_cols=360 Identities=9% Similarity=0.034 Sum_probs=215.6
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC---cchHHHHHHHhhcCC-CCCCHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR---FSDIETLIESHKNDP-KITQEP 98 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~ 98 (403)
-+...|..++..+.+.+.++.+..+|+++...- |. ....|...+..-.+.++ ++.+..+|++..... .+++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 355578888999988999999999999999988 54 44567777777788888 999999999998533 137777
Q ss_pred HHHHHHHHHhccCCH--------HHHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHHh---------cCCcCcHHHHHHHc
Q 015673 99 YLCNLIRSYGQAGMF--------DHAMRTFDQMDE-LGT-PR-SVISFNALLFACTR---------SRLYDKVPILFDEI 158 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 158 (403)
.|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888777665555443 334577777654 354 34 34677777665432 23345566666666
Q ss_pred hhhCCCCCc--hHHHH---HH-----------------------------------------------------------
Q 015673 159 PKKYNLSPD--KISYG---LL----------------------------------------------------------- 174 (403)
Q Consensus 159 ~~~~~~~~~--~~~~~---~l----------------------------------------------------------- 174 (403)
+. +|.. ..+|. .+
T Consensus 221 L~---iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 221 LC---QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp TT---SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred Hh---CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 53 2111 11111 11
Q ss_pred -----------HHHHHhcC-------ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCC
Q 015673 175 -----------LKSHCDSG-------SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE-RLWSEMEKKGVD 235 (403)
Q Consensus 175 -----------~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~ 235 (403)
+..--..+ ..+.+..+|+++... .+-+...|...+..+...|+.++|. ++|++.... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 00000000 001122333333333 2234445555555566677777776 888887764 22
Q ss_pred CchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC---------CCC------------hhcHHHHHHHHHhcCChHHHHH
Q 015673 236 LDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL---------KPD------------TISYNFLMTCYCKNEMMDEAKK 293 (403)
Q Consensus 236 ~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~A~~ 293 (403)
.+...+-..+... ..|+++.|.++|+.+..... .|+ ...|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2333333344444 77888888888887765310 121 2356666666677788888888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 294 VYEGLEEN-GCSPNATTFRTWIYHLCGS-GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 294 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
+|....+. + ......|...+..-.+. ++.+.|.++|+..++. .+.+...+..+++.....|+.+.|..+|++..+.
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 88888765 2 12233443333333333 4478888888888775 3556666777777777788888888888888776
Q ss_pred CCc--hhHHHHHHHHHHhCCCCC
Q 015673 372 FPP--NVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 372 ~~~--~~~~~~~~l~~~~~~~~~ 392 (403)
.++ .....|...++--..+|+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC
Confidence 553 344566665554444443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=2.2e-11 Score=98.83 Aligned_cols=207 Identities=12% Similarity=0.028 Sum_probs=152.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (403)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.... +...+..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988754367788888999999999999999999999986422 334444455
Q ss_pred hhh-cCCChHHHHHHHHHHHHCCCCCCh-------hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 015673 246 TNT-YGGDPERLKELIDEMRDAGLKPDT-------ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN---ATTFRTWI 314 (403)
Q Consensus 246 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 314 (403)
..+ ..|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 555 8899999999999998863 2234 45777888888999999999999999876 454 45677777
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
.++...| ..+++++...+ ..+...|.... ....+.+++|...+++..+..| +....+..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 7775544 44556665554 34455554433 3446678999999999988544 44445554443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=2.4e-12 Score=121.15 Aligned_cols=167 Identities=10% Similarity=0.002 Sum_probs=147.6
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
.+...++.+...+.+.|++++|++.|+++++.. |. ...+|..+..+|.+.|++++|+..|++..+ ..+.....|..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Confidence 346789999999999999999999999999998 54 667888999999999999999999999885 45566788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
+..++.+.|++++|++.|++..+.... +..+|+.+..+|.+.|++++|+..|++..+. .+-+...+..+..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 999999999999999999999987654 6889999999999999999999999999864 2345778999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 015673 183 SSDKALELLNEMEN 196 (403)
Q Consensus 183 ~~~~a~~~~~~~~~ 196 (403)
++++|.+.++++.+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.5e-11 Score=96.00 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=86.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 54 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 54 KTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 4444444444444444432 2245566667777778888888888888877654 4566777778888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888887765 556778888888888888888888888888764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=7.5e-12 Score=117.85 Aligned_cols=166 Identities=9% Similarity=0.005 Sum_probs=146.9
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
...+|+.+...+.+.|++++|+..|++..+ ..+.+...+..+..+|.+.|++++|+..|++..+.... +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 567889999999999999999999999985 45566788999999999999999999999999987654 6889999999
Q ss_pred HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH
Q 015673 141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220 (403)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 220 (403)
++.+.|++++|++.|++.++. -+-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999864 23467889999999999999999999999999863 346788999999999999999
Q ss_pred HHHHHHHHHHH
Q 015673 221 EAERLWSEMEK 231 (403)
Q Consensus 221 ~a~~~~~~~~~ 231 (403)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.8e-11 Score=99.33 Aligned_cols=206 Identities=7% Similarity=-0.028 Sum_probs=155.8
Q ss_pred ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673 23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN 102 (403)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (403)
.++..+......+...|++++|++.|+.+++.. |..+...+..+..++...|++++|...+++... ..+.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hCcchHHHHHH
Confidence 345788888999999999999999999999988 534556666789999999999999999999985 44456677888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSV-------ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYG 172 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 172 (403)
+..++...|++++|+..|++..+..+. +. ..|..+...+...|++++|+..|++..+ ..|+ ...+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~ 157 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHH
Confidence 999999999999999999999886543 44 4577888889999999999999999975 3454 56677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673 173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (403)
.+..+|...| ..+++++...+. .+...|.... ....+.+++|+..+++..+. .|+......++
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 7777776443 445566655432 2344444333 34456789999999999987 45544443333
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=4.8e-12 Score=106.16 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=151.4
Q ss_pred ccCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC------C-CCCCHHHHHHHH
Q 015673 37 SEFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND------P-KITQEPYLCNLI 104 (403)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 104 (403)
..|++++|+..|+++.+.- ..++....++..+...+...|++++|...++++... . .+.....+..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777777777776521 112335667788999999999999999999988643 1 223344678899
Q ss_pred HHHhccCCHHHHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC------CCCCchHHH
Q 015673 105 RSYGQAGMFDHAMRTFDQMDEL------G-TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY------NLSPDKISY 171 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 171 (403)
.++...|++++|+..|+++.+. . .+....++..+...+...|++++|..++++..+.. ..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 12346778888999999999999999999887541 122245678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-------CCCC-chhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCc
Q 015673 172 GLLLKSHCDSGSSDKALELLNEMENK-------GVEV-TTVTYTTVLNCLYKQGNAE------EAERLWSEMEKKGVDLD 237 (403)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~ 237 (403)
..+..+|...|++++|..+++++.+. ...+ ....+..+...+...+... .+...+..... ..|+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 88999999999999999999988753 1122 2233333333333333222 22222221111 1122
Q ss_pred -hHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673 238 -VAAYNVRITNT-YGGDPERLKELIDEMRDA 266 (403)
Q Consensus 238 -~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~ 266 (403)
...+..+...+ ..|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444555555 889999999999887653
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=6e-10 Score=92.47 Aligned_cols=269 Identities=14% Similarity=0.054 Sum_probs=155.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
++-..-.|++..++.-..++. .........-+.+++...|+++.. ....|....+..+.. |...
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~--- 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDT--- 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTT---
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhcc---
Confidence 455556788877777444332 112222333355777777776632 112233334333333 3332
Q ss_pred CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673 149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGNAEEAERLWS 227 (403)
Q Consensus 149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (403)
.++..|+++... + +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 84 -~a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 84 -KNIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp -TCCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cHHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 267777777653 2 44555556777788888888888888887766543 2356667777788888888888888888
Q ss_pred HHHHcCCCC-----chHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 015673 228 EMEKKGVDL-----DVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297 (403)
Q Consensus 228 ~~~~~~~~~-----~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (403)
+|.+. .| +..+...+..+. ..+++..|..+|+++.+. .|+..+...++.++.+.|++++|...++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88765 44 244444444332 233777888888887654 34423333444477777888888888776
Q ss_pred HHHC-----C----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 298 LEEN-----G----CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 298 ~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
+.+. . -+.|+.++..+|......|+ +|.++++++.+.. |.++.+. ++.+....|+++
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k~~~Fd~~ 302 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEIDAKFDEL 302 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHHHHHHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHHHHHHHHH
Confidence 5532 0 03355566556555555665 7777777777654 3333321 123445556666
Q ss_pred HHhCCc
Q 015673 369 KKKFPP 374 (403)
Q Consensus 369 ~~~~~~ 374 (403)
..++.+
T Consensus 303 ~~ky~~ 308 (310)
T 3mv2_B 303 VRKYDT 308 (310)
T ss_dssp HHTCC-
T ss_pred HHHhcC
Confidence 555543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=1.4e-09 Score=90.23 Aligned_cols=79 Identities=11% Similarity=-0.038 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+.. +. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444444433 223333344444555555555555555554322 11 123344444555555555555555555555
Q ss_pred Hh
Q 015673 195 EN 196 (403)
Q Consensus 195 ~~ 196 (403)
.+
T Consensus 163 ~~ 164 (310)
T 3mv2_B 163 TN 164 (310)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.9e-09 Score=98.41 Aligned_cols=363 Identities=10% Similarity=0.020 Sum_probs=235.7
Q ss_pred cccchhHHHHHhhhhccCCh--------HHHHHHHHHhhhcc-C-CCCcchhhHHHHHHHHH---------hcCCcchHH
Q 015673 22 TASSISVSKAKSKLRSEFDP--------DKALDIYSSVSKHY-A-SPVSSRYAQDLTVRRLA---------KSKRFSDIE 82 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~--------~~A~~~~~~~~~~~-~-~p~~~~~~~~~l~~~~~---------~~~~~~~a~ 82 (403)
+|+...|..-+....+.++. +...++|+.++..- . .+ .+...|...+.... .+++++.+.
T Consensus 136 ~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~-~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 136 NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP-KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 36666777766655554433 34558888877643 2 23 24456766665543 234577899
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhc-------------cCCHHHHHHHHHHHHh--CCC----C-----------C--
Q 015673 83 TLIESHKNDPKITQEPYLCNLIRSYGQ-------------AGMFDHAMRTFDQMDE--LGT----P-----------R-- 130 (403)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~--~~~----~-----------~-- 130 (403)
.+|+.+...+......+|......-.. ..+++.|...+..+.. .++ + |
T Consensus 215 ~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~ 294 (679)
T 4e6h_A 215 KLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKP 294 (679)
T ss_dssp HHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCT
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCC
Confidence 999998853332223344322221111 1234445555554321 111 1 1
Q ss_pred c------HHHHHHHHHHHHhcCC-------cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 015673 131 S------VISFNALLFACTRSRL-------YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL-ELLNEMEN 196 (403)
Q Consensus 131 ~------~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 196 (403)
+ ...|...+..--..+. .+.+..+|++.+.. ++-+...|...+..+...|+.++|. ++|++...
T Consensus 295 ~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 295 NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 2345555544333221 12345678888774 4446777888888888889999997 99999987
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCc------------hHHHHHHHhhh-cCCChH
Q 015673 197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG---------VDLD------------VAAYNVRITNT-YGGDPE 254 (403)
Q Consensus 197 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~-~~~~~~ 254 (403)
. .+.+...|...+...-+.|+++.|.++|+.+.+.. ..|+ ...|...+... +.|+.+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 5 55677778888888999999999999999988641 0132 22455555555 778999
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKN-EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES 333 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (403)
.|..+|....+.-..+....|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998751112233343333333344 4589999999999876 3456677778888888899999999999999
Q ss_pred HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 334 VMVHKIP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 334 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
+.....+ ....|..++..-.+.|+.+.+.++.+++.+.+|.+. ....+...|+...
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~--~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN--KLEEFTNKYKVLD 588 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC--HHHHHHHHTCBTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--HHHHHHHHhcCCc
Confidence 8765321 346788888888899999999999999999887653 2344556665543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=3.1e-11 Score=101.16 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=85.8
Q ss_pred HhcCCcchHHHHHHHhhcC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCcHHHHHHH
Q 015673 73 AKSKRFSDIETLIESHKND-------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL------GT-PRSVISFNAL 138 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 138 (403)
...|++++|...+++.... ..+.....+..+..++...|++++|+..|+++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665431 12223345566777777777777777777766543 11 1124455566
Q ss_pred HHHHHhcCCcCcHHHHHHHchhhC-----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCchhh
Q 015673 139 LFACTRSRLYDKVPILFDEIPKKY-----N-LSPDKISYGLLLKSHCDSGSSDKALELLNEMENK------G-VEVTTVT 205 (403)
Q Consensus 139 l~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 205 (403)
...|...|++++|...+++..+.. . .+....++..+...|...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 666666666666666666654421 0 1222344555556666666666666666655443 1 1112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 206 YTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
+..+..+|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555566666666655555543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=9e-11 Score=97.40 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=120.3
Q ss_pred CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCC
Q 015673 21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK--ITQ 96 (403)
Q Consensus 21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 96 (403)
.+.++..+......+...|++++|+..|+.+++.. |.. ...++..+..++...|++++|...|+++..... +..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 34455677788888999999999999999999887 432 256677888899999999999999999875322 122
Q ss_pred HHHHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch
Q 015673 97 EPYLCNLIRSYGQ--------AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK 168 (403)
Q Consensus 97 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 168 (403)
...+..+..++.. .|++++|+..|+++.+..+. +......+.. +..+... -.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~-----~~ 148 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH-----HH
Confidence 3456678888888 89999999999998875532 2222222110 0000000 01
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEV--TTVTYTTVLNCLYKQ----------GNAEEAERLWSEMEKK 232 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 232 (403)
..+..+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 123455556666666666666666665532110 223455555555544 6666666666666654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=9.2e-10 Score=92.87 Aligned_cols=105 Identities=11% Similarity=-0.053 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCCc-hHHHHHHHHHHHhcCChHHH
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSPD-KISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a 187 (403)
++++|...|++. ...|...|++++|...|.+..+.. +.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 234555666666666666554321 11111 34666777777777777777
Q ss_pred HHHHHHHHhCC----CCC-chhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015673 188 LELLNEMENKG----VEV-TTVTYTTVLNCLYKQ-GNAEEAERLWSEMEK 231 (403)
Q Consensus 188 ~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 231 (403)
+..+++..+.. ... -..++..+..+|... |++++|+..|++..+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77777665421 000 123455566666664 666666666666554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=4.6e-10 Score=94.73 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=157.6
Q ss_pred CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc-hhhHHHHHHHHHhcCCHHH
Q 015673 147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK----GVEVT-TVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~ 221 (403)
++++|...|++. ...|...|++++|...|++..+. |.+++ ..+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366676666665 44677899999999999988653 22222 5688999999999999999
Q ss_pred HHHHHHHHHHcCC---CCc--hHHHHHHHhhh-cC-CChHHHHHHHHHHHHCCCCC-C----hhcHHHHHHHHHhcCChH
Q 015673 222 AERLWSEMEKKGV---DLD--VAAYNVRITNT-YG-GDPERLKELIDEMRDAGLKP-D----TISYNFLMTCYCKNEMMD 289 (403)
Q Consensus 222 a~~~~~~~~~~~~---~~~--~~~~~~ll~~~-~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~ 289 (403)
|+..+++..+... .+. ...++.+-..+ .. |++++|...|++..+..... + ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999998876421 111 23455555566 65 99999999999987642110 1 346788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hc
Q 015673 290 EAKKVYEGLEENGCSPNA------TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF------NTVKLLVEGLV--KK 355 (403)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~ 355 (403)
+|+..|++..+....... ..|..+..++...|++++|+..|++.++.. |+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999876422221 156777888999999999999999988643 321 23444566664 45
Q ss_pred CCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 356 KKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
+++++|+..|+++.+ ..|.....|..+-..+
T Consensus 254 ~~~~~A~~~~~~~~~-l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR-LDKWKITILNKIKESI 284 (292)
T ss_dssp TTHHHHHHHHTTSSC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCc-cHHHHHHHHHHHHHHh
Confidence 678888888877755 5666666666655544
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=1.5e-10 Score=92.40 Aligned_cols=112 Identities=8% Similarity=-0.058 Sum_probs=59.0
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHH----------------HHHHHHhcCCcchHHHHHHHhh
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDL----------------TVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
..+......+...|++++|+..|+.+.+.+ |. +...+.. +..++...|++++|...|++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--ID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556677888999999999999999987 53 3344444 4444444444444444444443
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
. ..|.+...+..+..++...|++++|+..|+++.+..+. +..++..+..+|
T Consensus 82 ~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 132 (208)
T 3urz_A 82 Q-KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY 132 (208)
T ss_dssp H-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 2 22233334444444444444444444444444443321 333444444433
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=2.2e-08 Score=83.97 Aligned_cols=236 Identities=10% Similarity=0.002 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--CcCcHHHHHHHchhhCCCCCchHHHHHHHHHH----Hhc---CC
Q 015673 113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSR--LYDKVPILFDEIPKKYNLSPDKISYGLLLKSH----CDS---GS 183 (403)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 183 (403)
.++|+.+++.++...+. +..+|+.--..+...| ++++++.+++.+... .+-+..+|+.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666666554432 3444555555555555 555555555555542 222333333333222 222 44
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEM 263 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~ 263 (403)
+++++++++++.+.. +-+..+|+.-..++.+.|.++ .+++++.++.+
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~--------------------------------~~~EL~~~~~~ 172 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN--------------------------------DAKELSFVDKV 172 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT--------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC--------------------------------hHHHHHHHHHH
Confidence 555555555555442 224444444444444444444 01444445554
Q ss_pred HHCCCCCChhcHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 015673 264 RDAGLKPDTISYNFLMTCYCKNEM------MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK-AYKVFKESVMV 336 (403)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 336 (403)
.+.+.. |...|+.-...+...+. ++++++.+..++... +-|...|+.+...+.+.|+... +..+..++.+.
T Consensus 173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 444322 44444444444444444 788888888888775 5678888888888888777544 55566666543
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 337 H--KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 337 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
+ -+.++..+..+..+|.+.|+.++|.++++.+.++..|.....|+.....
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 2 2457788889999999999999999999999888889888899866553
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2.4e-10 Score=108.05 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=95.6
Q ss_pred HhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 73 AKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
...|++++|++.+++... ...+.+...+..+..++...|++++|+..|+++.+.+.. +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 556666666666666651 123344455566666666667777777776666664432 556666666666666
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
|++++|+..|++..+. .+.+...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776666542 22345556666666666677766 66666666542 23455666666666677777777776
Q ss_pred HHHHHHc
Q 015673 226 WSEMEKK 232 (403)
Q Consensus 226 ~~~~~~~ 232 (403)
|++..+.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 6666554
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.2e-10 Score=87.57 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=111.4
Q ss_pred HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc
Q 015673 31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110 (403)
Q Consensus 31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (403)
+...+...|++++|+..++...... |. ....+..+...|.+.|++++|++.|++... ..|.+...|..+..++.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Confidence 5667778889999999999988766 43 445566788999999999999999999874 4556777888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH-HHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL-FDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
|++++|+..|++..+..+. +..++..+...|.+.|+++++... +++..+. .|-+...|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999886643 678888888999999998887665 4776653 23456667777666666654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=7.4e-10 Score=81.25 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=82.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (403)
+..++..+...|++++|..+|+.+.+.+. .+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 45566666666777777777776665443 24556666666666667777777777666543 2334556666667777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
..|++++|.++++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766652 234556666777777777777777777766654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=9.5e-10 Score=91.18 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=42.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS---VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLL 175 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 175 (403)
+..+...+.+.|++++|+..|+.+.+..+. + ...+..+..++.+.|++++|+..|+++.+...-.|. ...+..+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333444444445555555555544443211 1 334444444444445555555555444433111111 22344444
Q ss_pred HHHHh--------cCChHHHHHHHHHHHhC
Q 015673 176 KSHCD--------SGSSDKALELLNEMENK 197 (403)
Q Consensus 176 ~~~~~--------~~~~~~a~~~~~~~~~~ 197 (403)
.++.. .|++++|...|+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 44444 55555555555555543
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=2.3e-10 Score=88.67 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=77.9
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS 106 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (403)
.+......+...|++++|+..|+.+.+.. |. +...+..+...+...|++++|...++.+..... +...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 34455566666677777777777666665 33 345555666666666777777666666653221 33222211111
Q ss_pred -HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 107 -YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 107 -~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
+...+....|+..|++..+..+. +...+..+..++...|++++|...|+++.+...-..+...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 11111222344445554443321 3444455555555555555555555554432110112334444455555555555
Q ss_pred HHHHHHHHH
Q 015673 186 KALELLNEM 194 (403)
Q Consensus 186 ~a~~~~~~~ 194 (403)
+|...|++.
T Consensus 162 ~A~~~y~~a 170 (176)
T 2r5s_A 162 AIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555544443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1.7e-09 Score=79.26 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=78.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|.+
T Consensus 13 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 90 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE 90 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHH
Confidence 4444555555555444432 2244555666666777777777777777776654 3455666677777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
.++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 91 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 91 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777776654 445667777777777778888887777777653
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=1.5e-09 Score=87.77 Aligned_cols=186 Identities=10% Similarity=-0.021 Sum_probs=124.7
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC-CCH-HHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI-TQE-PYL 100 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~ 100 (403)
+..+..+...+...|++++|+..|+.+.+.. |.. ...++..++.++.+.|++++|+..|+++...... +.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 3456667788889999999999999999877 432 2456778889999999999999999998753222 211 134
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC
Q 015673 101 CNLIRSYGQ------------------AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162 (403)
Q Consensus 101 ~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 162 (403)
..+..++.. .|++++|+..|+++.+..+. +..++...... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444444443 56778888888887775422 22222211110 0001111
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
......+...|.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1122456778888999999999999988752 212 2567788899999999999999999888764
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.2e-09 Score=103.16 Aligned_cols=173 Identities=12% Similarity=-0.003 Sum_probs=136.9
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c
Q 015673 179 CDSGSSDKALELLNEME--------NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y 249 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~ 249 (403)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|+..|+++.+.... +...+..+-..+ .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 43 3446678888999999999999999999999887432 334444444444 8
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015673 250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329 (403)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (403)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ ...|++..+.+ +.+...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999998874 3356788889999999999999 99999998875 55678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
|+++++.+ +.+...+..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988655 3446777777778766555
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=8.1e-09 Score=82.53 Aligned_cols=177 Identities=14% Similarity=-0.007 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC----CHHHHH
Q 015673 42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG----MFDHAM 117 (403)
Q Consensus 42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~ 117 (403)
.+|++.|++..+.+ +..++..+...+...+++++|...|++....+ +...+..|...|.. + ++++|+
T Consensus 3 ~eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 35677777777766 45566777778888888888888888877543 44556667777776 6 788888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCC-CchHHHHHHHHHHHh----cCChHHHH
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLS-PDKISYGLLLKSHCD----SGSSDKAL 188 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~ 188 (403)
+.|++..+.| +..++..|...|.. .+++++|+.+|++..+. +.. .+...+..|...|.. .+++++|.
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888887653 56677777777766 67788888888887653 211 125667777777777 67788888
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 015673 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQ-G-----NAEEAERLWSEMEKKG 233 (403)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 233 (403)
.+|++..+. +.+...+..|..+|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888887775 22444566666666543 2 7788888888777765
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=4.3e-08 Score=78.29 Aligned_cols=180 Identities=12% Similarity=-0.007 Sum_probs=97.4
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCC----ChHHHHHHHHH
Q 015673 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG----DPERLKELIDE 262 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~a~~~~~~ 262 (403)
|++.|++..+.| +...+..+...|...+++++|+..|++..+.+ +...+..+-..+..+ ++++|...|++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444455444442 34444555555555555555555555555543 222222222223113 56666666666
Q ss_pred HHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHHHH
Q 015673 263 MRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCG----SGNFDKAYKVFKES 333 (403)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 333 (403)
..+.| +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .++.++|+.+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65543 44455556666655 56677777777776665411 014556666666666 66677777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCCchhH
Q 015673 334 VMVHKIPDFNTVKLLVEGLVKK-K-----KIKEAKGVIRTIKKKFPPNVL 377 (403)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~~~ 377 (403)
.+. +.+...+..|...|... | ++++|...+++..+...++..
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~ 203 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 665 12334555566666542 2 677777777777665554433
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=9.7e-10 Score=92.42 Aligned_cols=166 Identities=10% Similarity=-0.017 Sum_probs=134.6
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHH-HHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN-ALL 139 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll 139 (403)
+...+..+...+...|++++|...|+++.. ..|.+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ-LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 445566788889999999999999999874 455667788889999999999999999999987755 4443333 333
Q ss_pred HHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHhcCC
Q 015673 140 FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTVLNCLYKQGN 218 (403)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~ 218 (403)
..+...++.++|...+++..+. .+.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3467788889999999998763 4556788999999999999999999999999886332 126789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015673 219 AEEAERLWSEMEK 231 (403)
Q Consensus 219 ~~~a~~~~~~~~~ 231 (403)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999887654
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=1.1e-09 Score=87.25 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhCCCCCc
Q 015673 68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN----------------LIRSYGQAGMFDHAMRTFDQMDELGTPRS 131 (403)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 131 (403)
....+...|++++|...|++.... .|.+...+.. +..++.+.|++++|+..|++..+..+. +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-N 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 344455666666666666665531 2222233333 444444444444444444444443322 3
Q ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673 132 VISFNALLFACTRSRLYDKVPILFDEIPK 160 (403)
Q Consensus 132 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 160 (403)
...+..+..++...|++++|+..|++..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.6e-08 Score=81.73 Aligned_cols=188 Identities=9% Similarity=0.013 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHH
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAY 241 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 241 (403)
+...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455667788889999999999999999875221 1 1356778889999999999999999999886433221 122
Q ss_pred HHHHhhhc------------------CCChHHHHHHHHHHHHCCCCCChh-cHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673 242 NVRITNTY------------------GGDPERLKELIDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDEAKKVYEGLEENG 302 (403)
Q Consensus 242 ~~ll~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 302 (403)
......+. .|++++|...|+++.+. .|+.. .+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 22221111 34455555555555543 22221 11111000 00000000
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.....+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|.+.++.+....|.+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011245667889999999999999998764 222 3578889999999999999999999888754443
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.4e-09 Score=84.28 Aligned_cols=162 Identities=9% Similarity=-0.032 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HH
Q 015673 65 QDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CT 143 (403)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 143 (403)
+......+...|++++|...|++... ..|.+...+..+..++...|++++|+..|+.+....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD-ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH-HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 44667778888889999888888764 3455667778888888888999999888888776543 44333322212 22
Q ss_pred hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHH
Q 015673 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 222 (403)
..+...++...+++..+. .+.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 333444577888887653 23356778888888888888888888888887764322 345777888888888888888
Q ss_pred HHHHHHHHH
Q 015673 223 ERLWSEMEK 231 (403)
Q Consensus 223 ~~~~~~~~~ 231 (403)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=4.4e-09 Score=76.25 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=97.1
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
..+......|.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+++.++.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456778889999999999999999998875 5678899999999999999999999999999876 66788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 353 VKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
...|++++|.+.|++..+ ..|+...++..|..++
T Consensus 92 ~~~~~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 999999999999999998 4556566887776654
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=8.2e-10 Score=82.98 Aligned_cols=139 Identities=18% Similarity=0.117 Sum_probs=101.8
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|++++|+..++...... +.+...+..+...|.+.|++++|...|++.++.. +-+...|..+..++...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 4567777777777765431 1134556678888888999999999999888764 4567788888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV-IRTIKKKFPPNVLRAWKKVEEELGLVP 391 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (403)
.|++.++.. +.++.++..+...|.+.|++++|.+. +++..+ ..|+....|......+...+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHhC
Confidence 998888766 55678888888888888888776554 577776 44455556665555544443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=3.7e-09 Score=88.86 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=91.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
+.+...+..+...+...|++++|...|+++.+. .+-+...+..+..++...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 334455666666677777777777777777665 23355666667777777777777777777665542 332222221
Q ss_pred Hhh-h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccC
Q 015673 245 ITN-T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCGSG 321 (403)
Q Consensus 245 l~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 321 (403)
... + ..++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 111 1 4445555555555555542 224455555666666666666666666665554211 01345555555555566
Q ss_pred ChHHHHHHHHHH
Q 015673 322 NFDKAYKVFKES 333 (403)
Q Consensus 322 ~~~~a~~~~~~~ 333 (403)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 655555555543
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=2.1e-09 Score=99.78 Aligned_cols=154 Identities=11% Similarity=-0.043 Sum_probs=115.6
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
.|++++|++.|+++.+.. |. +...+..+...+...|++++|.+.+++... ..+.+...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLA-LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999998877 43 567788899999999999999999999984 45566778888999999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 015673 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS---GSSDKALELLNEM 194 (403)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 194 (403)
+.|++..+.... +...+..+..++.+.|++++|...|++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999887643 6788999999999999999999999998764 334567888899999999 9999999999999
Q ss_pred HhCC
Q 015673 195 ENKG 198 (403)
Q Consensus 195 ~~~~ 198 (403)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8764
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=5.3e-09 Score=97.07 Aligned_cols=155 Identities=8% Similarity=-0.092 Sum_probs=118.4
Q ss_pred cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673 75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL 154 (403)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 154 (403)
.|++++|...+++... ..+.+...+..+...+...|++++|++.|++..+.... +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR-HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899999998874 45566778888999999999999999999999987643 688899999999999999999999
Q ss_pred HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 015673 155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ---GNAEEAERLWSEMEK 231 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 231 (403)
+++..+. .+.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999874 34467789999999999999999999999998863 34678888999999999 999999999999988
Q ss_pred cCC
Q 015673 232 KGV 234 (403)
Q Consensus 232 ~~~ 234 (403)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 753
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=1.4e-07 Score=79.06 Aligned_cols=179 Identities=9% Similarity=-0.067 Sum_probs=125.3
Q ss_pred HhhhhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC--CcchHHHHHHHhhcCCCCCCHHHHHHHHHHH-
Q 015673 32 KSKLRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK--RFSDIETLIESHKNDPKITQEPYLCNLIRSY- 107 (403)
Q Consensus 32 ~~~l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~- 107 (403)
+++..+.|. .++|+++++.++..+ |. ...+|+.-...+...+ ++++++..++.+.. ..|.+..+|+.-..++
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-~nPk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--AS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-DNEKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-HCTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HCcccHHHHHHHHHHHH
Confidence 444445554 468999999999988 54 5566777778888888 88889998888875 3444555565533333
Q ss_pred ---hcc---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC--cHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673 108 ---GQA---GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD--KVPILFDEIPKKYNLSPDKISYGLLLKSHC 179 (403)
Q Consensus 108 ---~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (403)
... +++++++.+++.+.+..++ +..+|+.-.-.+.+.|.++ ++++.++++.+. -+-|...|+.......
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344 6788888888888887665 7888888777777788887 888888888764 3446667776666666
Q ss_pred hcCC------hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673 180 DSGS------SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN 218 (403)
Q Consensus 180 ~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 218 (403)
..+. ++++++.++.+.... +-|...|+.+...+.+.|+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 6665 677777777776653 3466667666666666665
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=6.4e-09 Score=88.36 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=117.9
Q ss_pred ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673 37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA 116 (403)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 116 (403)
..|++++|.++++++.+.. +. . + +...++++.|...|.+. +..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~-~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT-S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC-C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc-c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 3578889999999888765 21 1 0 11146777777777654 4567788999999
Q ss_pred HHHHHHHHhCCC----C-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCC-chHHHHHHHHHHHhcCChHHH
Q 015673 117 MRTFDQMDELGT----P-RSVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSP-DKISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 117 ~~~~~~~~~~~~----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a 187 (403)
...|.+..+... . .-..+|+.+...|...|++++|+..|++..+.. +.+. -..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 999888755311 1 114577888888999999999999998876431 1111 13567788888888 999999
Q ss_pred HHHHHHHHhCCCC-----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 188 LELLNEMENKGVE-----VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
+..|++..+.... ....++..+..+|...|++++|+..|++..+.
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999887653110 01456777888888889999998888887653
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.2e-06 Score=79.10 Aligned_cols=320 Identities=8% Similarity=-0.025 Sum_probs=160.9
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhcC-C-CCCCHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR-FSDIETLIESHKND-P-KITQEPYLCNL 103 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~-~~~~~~~~~~l 103 (403)
.|...+..+-. |+++.+..+|++..... | +...|...+....+.+. .+....+|+..... + .+.+...|...
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~--p--s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKS--Y--NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTC--C--CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccC--C--CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 44444554443 88999999999999865 5 66677777766666653 45677788877643 2 35567888888
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-------------cCCcC-----------------
Q 015673 104 IRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR-------------SRLYD----------------- 149 (403)
Q Consensus 104 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~----------------- 149 (403)
+..+.. .++.+.+.++|++.+......-...|......-.. .+.+.
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 876542 35688899999998874221111222211110000 00111
Q ss_pred -------------------------cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchh
Q 015673 150 -------------------------KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV 204 (403)
Q Consensus 150 -------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 204 (403)
.+..+|++++.. .+.+...|...+..+.+.|+.+.|.+++++.... +.+..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 123344444331 2223344444444444555555555555555544 22221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKG---------VDL---DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD 271 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~ 271 (403)
.+.. |....+.++. ++.+.+.- ..+ ....|...+... +.++.+.|..+|+.. .. ...+
T Consensus 248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~ 318 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVG 318 (493)
T ss_dssp HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCC
T ss_pred HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCC
Confidence 1111 1111111111 11111100 000 011222222222 455677777777766 21 1112
Q ss_pred hhcHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 272 TISYNFLMTCYCK-NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 272 ~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
...|...+..-.. .++.+.|..+|+...+.. +-++..+...++.....|+.+.|..+|+++. .....|...+.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2233221211112 235777777777766542 2234445555666666777777777777652 24566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 015673 351 GLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~ 370 (403)
.-...|+.+.+..++++..+
T Consensus 393 fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 393 YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666777777777776654
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=7.3e-08 Score=78.97 Aligned_cols=194 Identities=9% Similarity=-0.042 Sum_probs=143.5
Q ss_pred HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHH-------HHHHHhcCCcchHHHHHHHhhc------------CC
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLT-------VRRLAKSKRFSDIETLIESHKN------------DP 92 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~ 92 (403)
...+ ..++++.|++.|.++...+ |. ....|.-+ ...+.+.++..++...+..... .+
T Consensus 14 ~~~~-~~~d~~~A~~~F~~a~~~d--P~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 14 AVSM-LPMSEARSLDLFTEITNYD--ES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred Hhcc-cCCCHHHHHHHHHHHHHhC--hh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3344 5899999999999999999 54 45566555 5666666666666666665543 11
Q ss_pred C--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673 93 K--------ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL 164 (403)
Q Consensus 93 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (403)
. .........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~ 165 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P 165 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C
Confidence 0 0112334557788889999999999999998755 44446667777899999999999999877532 1
Q ss_pred CCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673 165 SPD--KISYGLLLKSHCDSGSSDKALELLNEMENKGVEV--TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 165 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (403)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 221 3467888999999999999999999998654324 34466777888999999999999999999874
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=3e-08 Score=79.17 Aligned_cols=124 Identities=10% Similarity=-0.081 Sum_probs=58.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
+...+...|++++|+..|++.. .|+...+..+...+...|++++|+..|++..+. .+.+...+..+..++...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 3344444444444444444442 134444444444444445555555444444432 1223344445555555555
Q ss_pred ChHHHHHHHHHHHhCCCC---------------CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 183 SSDKALELLNEMENKGVE---------------VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~---------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
++++|.+.|++..+.... .....+..+..+|...|++++|...|+...+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555443110 01144555555566666666666666665554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=8.3e-07 Score=75.23 Aligned_cols=240 Identities=7% Similarity=-0.029 Sum_probs=144.8
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc-C-C
Q 015673 107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS-G-S 183 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 183 (403)
....+..++|+++++.+....+. +..+|+.--..+...| .+++++.+++.+.. ..+-+..+|+.-...+... + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCC
Confidence 34445567788888888876654 5666777766666677 47788888888775 3445566677666666655 5 7
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE--------EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPER 255 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 255 (403)
+++++++++++.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+..+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-------------------- 199 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-------------------- 199 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--------------------
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC--------------------
Confidence 778888888877663 336666665555555554444 555555555554322
Q ss_pred HHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----
Q 015673 256 LKELIDEMRDAGLKPDTISYNFLMTCYCKNEM-------MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF----- 323 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 323 (403)
|...|+.....+.+.+. ++++++.+.+++... +-|...|+-+-..+.+.|+.
T Consensus 200 ---------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 200 ---------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp ---------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred ---------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence 33333333333333332 355555555555443 33444554444444443332
Q ss_pred ---------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673 324 ---------------DKAYKVFKESVMVH-----KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV 383 (403)
Q Consensus 324 ---------------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (403)
.+...+..++.... -.+++..+..+++.|...|+.++|.++++.+.++..|--...|+-.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 22222222222211 1467788889999999999999999999999988899888889866
Q ss_pred HHH
Q 015673 384 EEE 386 (403)
Q Consensus 384 ~~~ 386 (403)
...
T Consensus 344 ~~~ 346 (349)
T 3q7a_A 344 RRE 346 (349)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=5.1e-07 Score=76.04 Aligned_cols=162 Identities=12% Similarity=-0.012 Sum_probs=116.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCchH----HHHHHHhhh-cCCChHHHHHHHHHHHHCCCC-CC----hhcHHH
Q 015673 209 VLNCLYKQGNAEEAERLWSEMEKKGV-DLDVA----AYNVRITNT-YGGDPERLKELIDEMRDAGLK-PD----TISYNF 277 (403)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 277 (403)
.+..+...|++++|..++++..+... .|+.. .+..+...+ ..+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667788888888888888776432 12211 112222233 667889999999888874322 22 226888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHH
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEE----N-GCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIP-DFNTVK 346 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 346 (403)
+..+|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|+..+++.++. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999873 1 11122 237788899999999999999999987753 2122 267888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 015673 347 LLVEGLVKKKK-IKEAKGVIRTIKK 370 (403)
Q Consensus 347 ~l~~~~~~~g~-~~~a~~~~~~~~~ 370 (403)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999998864
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=1.1e-07 Score=75.91 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=59.2
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|++++|...|++.. .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|+.
T Consensus 18 ~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp HTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHH
Confidence 4444444444444331 3344455555555555555555555555555442 3344455555555555555555555
Q ss_pred HHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 329 VFKESVMVHKIP----------------DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 329 ~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
.|+++.+.. +. ....+..+..+|.+.|++++|.+.+++..+..
T Consensus 93 ~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 93 DLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 555555432 11 12445555555555666666666655555533
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=3.3e-08 Score=73.83 Aligned_cols=102 Identities=11% Similarity=0.001 Sum_probs=83.9
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..++...|++++|+..|++++... +.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456777788888999999999999888775 5567788888888999999999999999988776 5567888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCch
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
|...|++++|...|++..+..+.+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999988755544
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=2.1e-08 Score=73.25 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=88.4
Q ss_pred CCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC
Q 015673 17 AGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ 96 (403)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (403)
.....+.+...+..+...+...|++++|+..|+.+.+.. |. +...+..+...+...|++++|...+++... ..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~ 83 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPTF 83 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTTC
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCc
Confidence 334445556677778888888888888888888888776 43 456667777888888888888888888764 23445
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
...+..+..++.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 666777888888888888888888887765432 4455566655555444
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=4.8e-07 Score=76.16 Aligned_cols=166 Identities=9% Similarity=-0.011 Sum_probs=89.1
Q ss_pred HHHHHhcCCcCcHHHHHHHchhhCCCCCchH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHH
Q 015673 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKI----SYGLLLKSHCDSGSSDKALELLNEMENKGVE-VT----TVTYTTV 209 (403)
Q Consensus 139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 209 (403)
+..+...|++++|..++++..+.....|+.. .+..+...+...|++++|+..|+++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556667777777777777655322233321 2334556666667777777777777663221 12 2256777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC-CCCC-ChhcHHHHHHHHHhcCC
Q 015673 210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA-GLKP-DTISYNFLMTCYCKNEM 287 (403)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 287 (403)
..+|...|++++|...++++.+.- + .. +..+ ...++..+...|.+.|+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~---------------------------~---~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQL---------------------------E---ALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH---------------------------H---HSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH---------------------------H---hcccchhHHHHHHHHHHHHHHHHhH
Confidence 777777777777777777765310 0 00 0000 12244455555556666
Q ss_pred hHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHHH
Q 015673 288 MDEAKKVYEGLEE----NGCSPN-ATTFRTWIYHLCGSGN-FDKAYKVFKESV 334 (403)
Q Consensus 288 ~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 334 (403)
+++|...+++..+ .+..+. ..+|..+..++.+.|+ +++|.+.++++.
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666655555442 111111 3455555555666663 456655555544
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.8e-08 Score=73.02 Aligned_cols=109 Identities=9% Similarity=-0.004 Sum_probs=77.1
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...+...+..+.+.|++++|++.|+++++.+ |. +...|..+..++...|++++|+..+++... ..+.+...|..+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg 88 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PE-NAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHH
Confidence 3456667777888888888888888887777 43 456667777778888888888888887764 3445566677777
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL 138 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (403)
.++...|++++|++.|++..+..+. +...+..|
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 7888888888888888887775532 44444443
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=3.9e-07 Score=76.75 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---Cc--HHHH
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQE-----PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP---RS--VISF 135 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~~~ 135 (403)
...+..+...|++++|.+.+++.......... ..+..+...+...|++++|+..|++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34455666677777777777665533222111 11233445556666777777777766542211 11 3456
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHchh---hCCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCC-chhh
Q 015673 136 NALLFACTRSRLYDKVPILFDEIPK---KYNLSP--DKISYGLLLKSHCDSGSSDKALELLNEMENKG----VEV-TTVT 205 (403)
Q Consensus 136 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 205 (403)
+.+...|...|++++|...|++..+ .....+ ...++..+..+|...|++++|...+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666667777777777777766652 211111 11456666667777777777777776654321 100 1445
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673 206 YTTVLNCLYKQGNAEEA-ERLWSEME 230 (403)
Q Consensus 206 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 230 (403)
|..+..+|.+.|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66666666777777666 55555543
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=4.1e-08 Score=83.40 Aligned_cols=168 Identities=12% Similarity=0.018 Sum_probs=84.8
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCC---CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC----CCCC-CHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYAS---PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND----PKIT-QEP 98 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~---p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 98 (403)
.|...+..+...|++++|++.|+++...... +.....+|..+...|...|++++|...|++.... +.+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555556666667777777776666554310 1112334555666666666666666666655321 1110 122
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCCc-hH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR-----SVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSPD-KI 169 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~ 169 (403)
.+..+..+|.. |++++|+..|++..+..... ...++..+...+.+.|++++|+..|++..+.. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34556666655 66666666666654321100 12345555555566666666666655554321 10011 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEME 195 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (403)
.+..++.++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444445555556666666555554
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=9.1e-08 Score=69.24 Aligned_cols=113 Identities=10% Similarity=-0.000 Sum_probs=93.9
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777888899999999999999998775 5578889999999999999999999999999876 5678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC-----chhHHHHHHHHHH
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFP-----PNVLRAWKKVEEE 386 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 386 (403)
+...|++++|...+++..+..| |+....+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 9999999999999999987441 5555566665544
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.1e-07 Score=72.40 Aligned_cols=128 Identities=16% Similarity=0.017 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (403)
.+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...+++..+. .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3555666777777777777777777665432 5666777777777777777777777777653 234556677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchhhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 015673 179 CDSGSSDKALELLNEMENKGVEVTTVTYT--TVLNCLYKQGNAEEAERLWSEME 230 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 230 (403)
...|++++|...|+++.+.. +.+...+. ..+..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77788888888877776652 22334442 23333666677777777776654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.6e-07 Score=67.44 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=87.3
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567778888888999999999998888764 4567788888888889999999999998888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
+...|++++|...++++.+..| +....+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 9999999999999998887544 334455544443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-07 Score=68.38 Aligned_cols=114 Identities=11% Similarity=-0.019 Sum_probs=91.7
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45667788888899999999999999988764 4467788888889999999999999999988765 557788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 351 GLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
++.+.|++++|.+.+++..+.. |+....|..+...+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 9999999999999999988744 44444666555544
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=5.3e-08 Score=75.26 Aligned_cols=124 Identities=10% Similarity=0.131 Sum_probs=86.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCh--HH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH-LCGSGNF--DK 325 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 325 (403)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777776653 3356677777778888888888888888877654 3456667777777 6677877 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
|...++++++.. +.+...+..+..+|...|++++|...++++.+..|.+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888877765 4556777777888888888888888888877754443
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=1.7e-08 Score=75.43 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=82.7
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++++... +.++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34566677888888999999999999888764 5577788888888999999999999999988766 556788888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC
Q 015673 351 GLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
+|...|++++|...|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999887743
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=5.8e-08 Score=70.48 Aligned_cols=122 Identities=10% Similarity=-0.030 Sum_probs=85.5
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
+.+...+..+...+...|++++|+..|+++.... |. +...+..+...+...|++++|...++..... .+.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 84 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHH
Confidence 3345566777777778888888888888887766 33 4556667777777888888888888777642 344456677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
.+..++...|++++|...|+...+..+. +...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 7777777888888888888877765432 556666666666666654
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=1.7e-06 Score=73.33 Aligned_cols=244 Identities=9% Similarity=0.046 Sum_probs=158.5
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC-CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc-C
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK-RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA-G 111 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 111 (403)
.+.+.+..++|+++++.++..+ |. ...+|+.-...+...| .+++++.+++.+.. ..+.+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--ch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhcC
Confidence 3444556688999999999999 54 5566777777777788 59999999999884 5566777787766666555 6
Q ss_pred -CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC--------cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673 112 -MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD--------KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182 (403)
Q Consensus 112 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (403)
++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++++. .+-|...|+.....+.+.+
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTST
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcc
Confidence 889999999999987765 7888887777776666676 788888888764 3457777888777777776
Q ss_pred C-------hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH--HHHHHHHHHHcCCCCchHHHHHHHhhhcCCCh
Q 015673 183 S-------SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE--AERLWSEMEKKGVDLDVAAYNVRITNTYGGDP 253 (403)
Q Consensus 183 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 253 (403)
. ++++++.++++... .+-|...|+.+-..+.+.|+... -..++ ...+...+ .....+.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~-------- 282 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PDIETVE-------- 282 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC--------------------
T ss_pred ccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCccccccccc---cccccccc-ccchhHH--------
Confidence 5 57788888777776 33466777766666655554310 00000 00000000 0000000
Q ss_pred HHHHHHHHHHHHC-----CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 254 ERLKELIDEMRDA-----GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 254 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
....++... .-.++...+..|+..|...|+.++|.++++.+.+.
T Consensus 283 ----~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 283 ----AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111111111 01345667777888888888888888888887643
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.3e-07 Score=77.48 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=128.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCch--------------
Q 015673 180 DSGSSDKALELLNEMENKGVEVTTVTYTTV-------LNCLYKQGNAEEAERLWSEMEKKGVDLDV-------------- 238 (403)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 238 (403)
..++...|.+.|.++.+.. +-....|..+ ..++...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5677788888888877752 2345666655 3444444445555444444333 11110
Q ss_pred -------HH-HHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--H
Q 015673 239 -------AA-YNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN--A 307 (403)
Q Consensus 239 -------~~-~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 307 (403)
.. .-.....+ ..|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 11 11122223 6788888888888776653 443355556667888999999999998665431 111 2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE 385 (403)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 385 (403)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....|. ...+..|..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 356777888999999999999999987543314 3456677788899999999999999999885554 557776653
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=2.9e-07 Score=69.98 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=89.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|..
T Consensus 25 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 5666666666666666543 3356677778888888899999999998888764 4567788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 015673 329 VFKESVMVHKIPDFNTVKL--LVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.++++.+.. +.+...+.. .+..+...|++++|.+.+++...
T Consensus 103 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 103 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999888765 445555533 34447788999999998887754
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=3.1e-08 Score=78.36 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhccC
Q 015673 37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-----PKITQEPYLCNLIRSYGQAG 111 (403)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 111 (403)
..|++++|.++++.+.. . |.....++..+...+...|++++|...+++.... ..+.....+..+...+...|
T Consensus 4 ~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45666666664433322 1 2234445555555566666666666655554420 00111123344555555555
Q ss_pred CHHHHHHHHHHHH
Q 015673 112 MFDHAMRTFDQMD 124 (403)
Q Consensus 112 ~~~~A~~~~~~~~ 124 (403)
++++|...+++..
T Consensus 81 ~~~~A~~~~~~al 93 (203)
T 3gw4_A 81 NWDAARRCFLEER 93 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1.1e-08 Score=85.63 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=119.4
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+...+..+...+...|++++|+..|+.+++.. |. +...|..+..++...|++++|...+++... ..+.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-VAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 34567778888889999999999999998887 43 556677888889999999999999998874 455667778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS 183 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (403)
..++...|++++|+..|+...+.++. +...+...+....+.. .... +...... ..+.+......+... ..|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEER-RIHQESELHSYLTRL--IAAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHH
Confidence 88899999999999999887664311 0001111111111110 1111 1112111 333444443333322 2577
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015673 184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ-GNAEEAERLWSEMEK 231 (403)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 231 (403)
+++|.+.++...+.. +.+......+...+.+. +.++++.++|..+.+
T Consensus 151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 778877777766542 22333333333334443 556777777776654
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=7.8e-09 Score=88.92 Aligned_cols=129 Identities=10% Similarity=0.051 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS--------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNL 164 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (403)
.+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..+++.++. .
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 344455555555555555555555544332211 356666666666666666666666666553 2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673 165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA-ERLWSEME 230 (403)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 230 (403)
+.+...|..+..+|...|++++|...|+++.+. .+.+...+..+..++.+.|+++++ ...+..|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666777777777777666665 223455666666666666666666 33445443
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=2.9e-07 Score=65.28 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=89.6
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556777888889999999999999988764 4467788888888999999999999999988765 5567888888999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
+...|++++|.+.+++..+. .|+....|..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHh
Confidence 99999999999999998874 44445566655443
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=1.9e-06 Score=72.46 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-----HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC---CC--hhcH
Q 015673 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV-----AAYNVRITNT-YGGDPERLKELIDEMRDAGLK---PD--TISY 275 (403)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~---~~--~~~~ 275 (403)
...+..+...|++++|.+.+.+..+....... ..+..+...+ ..|++++|...+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33445555666666666666555543221110 1111122222 556777777776666543111 11 3367
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH---HCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCC-CHH
Q 015673 276 NFLMTCYCKNEMMDEAKKVYEGLE---ENGCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVH----KIP-DFN 343 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 343 (403)
+.+...|...|++++|...+++.. +.. +.+ ..++..+...|...|++++|+..+++.++.. ... -..
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777888888888888888888776 221 111 1467777888888888888888888776432 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673 344 TVKLLVEGLVKKKKIKEA-KGVIRTIK 369 (403)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 369 (403)
+|..+..+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 777788888888888888 66677654
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.3e-08 Score=83.69 Aligned_cols=97 Identities=7% Similarity=-0.060 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK 176 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (403)
...+..+...+...|++++|+..|+...+..+. +...|..+..++.+.|++++|...+++..+ ..+.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344555666666777777777777776665432 566666666667777777777777776654 22334556666677
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 015673 177 SHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~ 196 (403)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766654
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=3.1e-08 Score=74.00 Aligned_cols=91 Identities=7% Similarity=-0.078 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
.+...+...|++++|...|+.+.. ..+.+...|..+..++...|++++|+..|+++....+. +...+..+..++...|
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 334444444444444444444432 22233333444444444444444444444444443321 3334444444444444
Q ss_pred CcCcHHHHHHHch
Q 015673 147 LYDKVPILFDEIP 159 (403)
Q Consensus 147 ~~~~a~~~~~~~~ 159 (403)
++++|...|++..
T Consensus 104 ~~~~A~~~~~~al 116 (148)
T 2vgx_A 104 ELAEAESGLFLAQ 116 (148)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=2.6e-07 Score=66.29 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH 178 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (403)
.+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|..+++++.+. .+.+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 344455555555555555555555544332 23444555555555555555555555555432 122344455555555
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 015673 179 CDSGSSDKALELLNEMENK 197 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~ 197 (403)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 145
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=4.6e-06 Score=75.41 Aligned_cols=203 Identities=8% Similarity=-0.027 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 015673 114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNE 193 (403)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (403)
+.+..+|+++....+ .+...|...+..+.+.|+.+.|..+|++.... |.+...+.. |....+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHH---HHH
Confidence 446678888877543 36778888888888999999999999999874 334333322 2222222222 222
Q ss_pred HHhCC------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHH--HHhhhcCCChHHHHHH
Q 015673 194 MENKG------------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNV--RITNTYGGDPERLKEL 259 (403)
Q Consensus 194 ~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~a~~~ 259 (403)
+.+.- .......|...+..+.+.++.+.|..+|+.. +.. ..+...|.. .+.....++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0112355777777777888999999999999 321 223333321 2222244579999999
Q ss_pred HHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
|+...+.- +-+...+...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99988763 2234456667777778999999999999973 2567888888877888999999998888764
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=1.1e-07 Score=75.17 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=102.1
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCC
Q 015673 73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL----GTP-RSVISFNALLFACTRSRL 147 (403)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~ 147 (403)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456888888885555442 22234556777888888889999998888887651 111 234566777777888888
Q ss_pred cCcHHHHHHHchhh---CCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcC
Q 015673 148 YDKVPILFDEIPKK---YNLSP--DKISYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQG 217 (403)
Q Consensus 148 ~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~ 217 (403)
+++|...+++..+. .+..+ ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776543 12111 2345677777888888888888888776532 111 11233566777788888
Q ss_pred CHHHHHHHHHHHHH
Q 015673 218 NAEEAERLWSEMEK 231 (403)
Q Consensus 218 ~~~~a~~~~~~~~~ 231 (403)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777654
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=2.5e-07 Score=67.07 Aligned_cols=113 Identities=14% Similarity=0.007 Sum_probs=80.6
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456667777777888888888888877653 3466677777778888888888888888877654 4556777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673 352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL 387 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (403)
+...|++++|...+++..+..| +....|..+...+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAE 124 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence 8888888888888888776443 3344565555544
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=6.1e-08 Score=74.92 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=73.0
Q ss_pred hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH-HhccC
Q 015673 33 SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS-YGQAG 111 (403)
Q Consensus 33 ~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 111 (403)
..+...|++++|+..|+...+.. |. +...+..+...+...|++++|...|++.... .+.+...+..+..+ +...|
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN--PQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC--CS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhccCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcC
Confidence 33456677777777777776666 33 4455666667777777777777777766532 23344555556666 55666
Q ss_pred CH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673 112 MF--DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160 (403)
Q Consensus 112 ~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 160 (403)
++ ++|+..|+.+.+..+. +...+..+...+...|++++|...|+++.+
T Consensus 94 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66 7777777666665432 455566666666666666666666666654
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=2.3e-07 Score=65.21 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=85.9
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP--DFNTVKLL 348 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 348 (403)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567778888889999999999999988764 4567788888889999999999999999988765 44 67888889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCch
Q 015673 349 VEGLVKK-KKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 349 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~ 375 (403)
..++... |++++|.+.+++..+..|++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999998765544
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=4.2e-08 Score=73.31 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
+...+..+...+.+.|++++|...|+++.. ..|.+...|..+..++...|++++|+..|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 344555666666777777777777777663 34455666666777777777777777777777665543 5666667777
Q ss_pred HHHhcCCcCcHHHHHHHchhh
Q 015673 141 ACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 141 ~~~~~~~~~~a~~~~~~~~~~ 161 (403)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=3.8e-07 Score=66.90 Aligned_cols=100 Identities=9% Similarity=-0.009 Sum_probs=84.9
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV 349 (403)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (403)
.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356678888888999999999999999988764 4567788888889999999999999999988866 56788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 015673 350 EGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
.+|...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=7.9e-07 Score=66.05 Aligned_cols=114 Identities=12% Similarity=-0.038 Sum_probs=94.0
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (403)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..+++.++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566778888899999999999999999876 455 5778888889999999999999999988765 55788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG 388 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (403)
.+..++...|++++|...+++..+..| +....|..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHh
Confidence 899999999999999999999988544 44557766665543
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=1.7e-07 Score=69.41 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=76.3
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL 352 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (403)
..+..+...+.+.|++++|...|+.....+ +.+...|..+..++...|++++|+..|++.+... +.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 445556777788888888888888887764 4567778888888888888888888888888765 55667777888888
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 015673 353 VKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~ 371 (403)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888764
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=2.2e-08 Score=79.03 Aligned_cols=88 Identities=14% Similarity=-0.024 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 015673 133 ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC 212 (403)
Q Consensus 133 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 212 (403)
..+..+..++...|++++|+..+++..+. .+.+...+..+..+|...|++++|.+.|++..+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHH
Confidence 34444444444555555555555544432 1223444555555555555555555555555443 12234444444444
Q ss_pred HHhcCCHHHHH
Q 015673 213 LYKQGNAEEAE 223 (403)
Q Consensus 213 ~~~~~~~~~a~ 223 (403)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=3.2e-07 Score=78.80 Aligned_cols=152 Identities=12% Similarity=-0.027 Sum_probs=104.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------hHHHHHHHH
Q 015673 110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-------------KISYGLLLK 176 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~ 176 (403)
.+++++|+..|+...+..+ -+...+..+...+.+.|++++|+..|++..+.....++ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444332221 25777888888888889999999988888764211110 477888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHH
Q 015673 177 SHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPER 255 (403)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~ 255 (403)
+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+... .+...+..+...+ ..|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888763 34677888888888889999999999988888632 2334444444444 6777777
Q ss_pred H-HHHHHHHH
Q 015673 256 L-KELIDEMR 264 (403)
Q Consensus 256 a-~~~~~~~~ 264 (403)
+ ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44555554
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=5.1e-05 Score=64.02 Aligned_cols=237 Identities=9% Similarity=-0.013 Sum_probs=120.0
Q ss_pred ccCCHH-HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------cCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673 109 QAGMFD-HAMRTFDQMDELGTPRSVISFNALLFACTRSRL----------YDKVPILFDEIPKKYNLSPDKISYGLLLKS 177 (403)
Q Consensus 109 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (403)
+.|.++ +|+.+++.+...++. +..+|+.--..+...+. +++++.+++.+... .+-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344433 566666666665432 34445443333332222 34444555555432 22344444444444
Q ss_pred HHhcC--ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChH
Q 015673 178 HCDSG--SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN-AEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE 254 (403)
Q Consensus 178 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 254 (403)
+...+ .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.+..+.+..+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~------------------- 177 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS------------------- 177 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-------------------
Confidence 44444 2455555555555442 2244444444444444444 34555555555444321
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKN--------------EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS 320 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (403)
|...|+.....+... +.++++++.+...+... +-|...|+-+-..+.+.
T Consensus 178 ----------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 178 ----------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp ----------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred ----------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 333333333322222 34566777777766654 44555665443334333
Q ss_pred -----------CChHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673 321 -----------GNFDKAYKVFKESVMVHKIPDFNTVKLLV---EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE 386 (403)
Q Consensus 321 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (403)
+.++++++.++++++.. +.+.-.+..++ ......|..+++...+.++.+ ..|.-...|..+...
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRAAYLDDLRSK 318 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH-HCGGGHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH-hCcchhhHHHHHHHH
Confidence 34678888888888755 22322222222 122246778888889998886 666666678777654
Q ss_pred h
Q 015673 387 L 387 (403)
Q Consensus 387 ~ 387 (403)
+
T Consensus 319 ~ 319 (331)
T 3dss_A 319 F 319 (331)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=6.4e-07 Score=68.13 Aligned_cols=98 Identities=12% Similarity=-0.027 Sum_probs=66.0
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455566666677777777777777766653 3356666667777777777777777777776655 4456666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 015673 352 LVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~ 371 (403)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776653
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=2e-07 Score=69.03 Aligned_cols=23 Identities=13% Similarity=0.324 Sum_probs=8.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMD 124 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~ 124 (403)
.+..++.+.|++++|+..|+...
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.2e-07 Score=66.31 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=70.6
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI 104 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (403)
...+......+...|++++|+..|+++++.. |. +...|..+..++...|++++|...+++... ..+.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PE-DARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHH
Confidence 3456667777777888888888888887776 43 456667777777777888888887777764 3344566677777
Q ss_pred HHHhccCCHHHHHHHHHHHHhCC
Q 015673 105 RSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.++...|++++|+..|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 77777788888877777776643
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=4.2e-07 Score=65.14 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=81.7
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (403)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667778889999999999999988764 4577888888899999999999999999998876 567788888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCC
Q 015673 354 KKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~ 373 (403)
..|++++|...+++..+..|
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999886433
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=1.4e-05 Score=67.48 Aligned_cols=119 Identities=8% Similarity=-0.005 Sum_probs=52.9
Q ss_pred ccCChH-HHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC----------cchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 37 SEFDPD-KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR----------FSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 37 ~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
+.|.++ +|+++++.++..+ |. ...+|+.--..+...+. ++++..+++.+.. ..|.+..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~-~~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--ch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 344433 5666666666666 33 22333333333322222 3444444444442 23334444444333
Q ss_pred HHhccC--CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchh
Q 015673 106 SYGQAG--MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPK 160 (403)
Q Consensus 106 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 160 (403)
++.+.+ .+++++.+++.+.+.++. +..+|+.-...+...|. ++++++.++.+++
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 333333 245555555555554433 44445444444444444 2445555555444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=5.7e-07 Score=63.08 Aligned_cols=101 Identities=7% Similarity=-0.091 Sum_probs=71.3
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLC 101 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 101 (403)
+...+..+...+...|++++|+..|+++.+.. |. +...+..+...+...|++++|...+++.... .+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHH
Confidence 44566677777778888888888888887766 33 4455666777777778888888777777643 333 456667
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHhCCC
Q 015673 102 NLIRSYGQA-GMFDHAMRTFDQMDELGT 128 (403)
Q Consensus 102 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 128 (403)
.+..++... |++++|++.++.+.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 777777777 777888777777776543
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=4.1e-08 Score=77.50 Aligned_cols=63 Identities=11% Similarity=-0.091 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
..+..+..+|...|++++|+..+++..+. .+.+...+..+..+|...|++++|...|++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44555666666666666666666666554 2234555666666666666666666666666654
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.2e-06 Score=75.39 Aligned_cols=202 Identities=9% Similarity=-0.070 Sum_probs=138.8
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcc--------------hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSS--------------RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT 95 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (403)
...+.+.+.|++++|++.|..+.+........ ..++..++..|...|++++|.+.+..+.......
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 35677889999999999999998876222111 1235678889999999999999988875421111
Q ss_pred CHH-----HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673 96 QEP-----YLCNLIRSYGQAGMFDHAMRTFDQMDE----LGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS 165 (403)
Q Consensus 96 ~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 165 (403)
... +.+.+...+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..+++++.......
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 223344555567889999998887653 22222 25577888888999999999999988876532211
Q ss_pred ----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 166 ----PDKISYGLLLKSHCDSGSSDKALELLNEMENK----GVEVT--TVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 166 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12456888889999999999999998877542 11111 24456666677788899999888877654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=2.4e-06 Score=61.72 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLL 348 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 348 (403)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|+..|+++++.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 4456677788899999999999888753 2223 467777888889999999999999888765 333 6777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 349 VEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
..++...|++++|...|+++.+..|.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 889999999999999999988866544
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=1.3e-06 Score=61.80 Aligned_cols=98 Identities=16% Similarity=0.022 Sum_probs=63.8
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..++..+...|++++|+..|+.+.... |. +...+..+...+...|++++|...+++.... .+.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 345566666777777777777777777665 33 3445566666677777777777777766532 3344555666667
Q ss_pred HHhccCCHHHHHHHHHHHHhCC
Q 015673 106 SYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
++...|++++|.+.|+...+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7777777777777777766644
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=8.8e-07 Score=67.34 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=80.1
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC 101 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (403)
+.+...+..+...+...|++++|++.|+++++.. |. +...|..+..++...|++++|+..|++... ..+.+...|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PA-NPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPKYSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHH
Confidence 3445667778888888899999999999888887 43 556677888888888888888888888874 3445567777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.+..++...|++++|+..|++..+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888888887654
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=1.2e-06 Score=63.36 Aligned_cols=96 Identities=9% Similarity=0.046 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC-CCCc----hHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPD----KISYGLL 174 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l 174 (403)
+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|+..+++.++... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555555555555555555555554332 344555555555555555555555555443200 0000 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 015673 175 LKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555444
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2e-06 Score=63.78 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=83.8
Q ss_pred cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673 22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY 99 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (403)
+.+...+..+...+...|++++|++.|+.+.+.. |.. ....+..+...+...|++++|...+++.... .+.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHH
Confidence 3445667778888889999999999999998877 532 1566677788888888888888888887643 3445666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL 139 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 139 (403)
+..+..++...|++++|...|++..+.... +...+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 777888888888888888888888775432 344444333
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.5e-05 Score=71.07 Aligned_cols=195 Identities=7% Similarity=-0.063 Sum_probs=121.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCc----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cch
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVT----------------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD-LDV 238 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 238 (403)
+.+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+..+.+.-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777766655421110 123566777888888888888887776543111 111
Q ss_pred ---HHHHHHHhhh--cCCChHHHHHHHHHHHHC----CCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--C
Q 015673 239 ---AAYNVRITNT--YGGDPERLKELIDEMRDA----GLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEEN--GC--S 304 (403)
Q Consensus 239 ---~~~~~ll~~~--~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~ 304 (403)
......+..+ ..|+++.+..+++..... +..+. ..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222333333 667888888888776432 22222 346677888888888998888888876532 11 1
Q ss_pred C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 305 P-NATTFRTWIYHLCGSGNFDKAYKVFKESVMV--HKI-P-D--FNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 305 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346777788888889999888888876543 111 1 1 23455666677778888888887777654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=2.5e-06 Score=61.58 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=76.8
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCC----HHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPD----FNTVK 346 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 346 (403)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667778888888888888888887764 45677788888888888888888888888776531 122 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
.+..++...|++++|.+.+++..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888888899899888888877544
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=2e-06 Score=62.16 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=78.2
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCC----HHHHH
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPD----FNTVK 346 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~ 346 (403)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356678888889999999999999988764 4567788888899999999999999998887642 1121 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673 347 LLVEGLVKKKKIKEAKGVIRTIKKKF 372 (403)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (403)
.+..++...|++++|++.|++..+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78888889999999999999887643
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=2.5e-06 Score=64.65 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=79.0
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEEN-------GC----------SPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
..+......+.+.|++++|...|...+.. +- +.+...|..+..++.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556677777888888888888776653 00 22345777888888999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673 336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376 (403)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 376 (403)
.+ +.+...|..+..+|...|++++|...|++..+..|.+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 76 66788888899999999999999999999887554443
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=1.8e-06 Score=63.22 Aligned_cols=98 Identities=7% Similarity=-0.056 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
+...+..+...+...|++++|+..|+......+. +...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 3445555666666666666666666666554432 4555566666666666666666666665542 223445556666
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 015673 176 KSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~ 196 (403)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665544
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=2.2e-07 Score=83.78 Aligned_cols=126 Identities=8% Similarity=-0.004 Sum_probs=101.4
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+.+.|++++|++.|+++.+.. |. +..++..+..++.+.|++++|.+.+++... ..+.+...+..+..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN--PS-NAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKKYIKGYYRRAA 82 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 345566778889999999999999999988 54 567788999999999999999999999985 35566778889999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFD 156 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 156 (403)
+|...|++++|++.|++..+.... +...+..+..+ +.+.|++++|+..++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999886543 44556656555 888899999999998
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6.9e-07 Score=64.00 Aligned_cols=98 Identities=8% Similarity=-0.100 Sum_probs=76.3
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+..+...+.+.|++++|+..|+.+++.. |. +...|..+..++...|++++|+..|++... ..+.+...+..+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PE-REEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAV 93 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 345667778888889999999998888887 44 556677888888888888888888888874 34455667778888
Q ss_pred HHhccCCHHHHHHHHHHHHhCC
Q 015673 106 SYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
++...|++++|+..|++..+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887643
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=4e-07 Score=64.81 Aligned_cols=87 Identities=5% Similarity=-0.082 Sum_probs=42.8
Q ss_pred cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 117 (403)
.|++++|+..|+++++.+...+.+..++..+..++...|++++|...|++... ..+.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45555666666665554211112334445555555555555555555555543 22333444555555555555555555
Q ss_pred HHHHHHHh
Q 015673 118 RTFDQMDE 125 (403)
Q Consensus 118 ~~~~~~~~ 125 (403)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=1.3e-06 Score=63.12 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCc----hHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPD----KISYGLL 174 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 174 (403)
+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..+.... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44455555555555555555555554332 24444555555555555555555555554432100 011 3445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 015673 175 LKSHCDSGSSDKALELLNEMENK 197 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~ 197 (403)
..++...|++++|.+.|+++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555566666666666555553
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=2e-07 Score=83.73 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS--------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNL 164 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 164 (403)
.+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..+++.++. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 344455555555555555555555544322111 456666777777777777777777777653 2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 015673 165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER-LWSEM 229 (403)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~ 229 (403)
+.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++++++.+ .+..|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777777652 2355666677777777777666553 34444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=6e-06 Score=59.60 Aligned_cols=97 Identities=16% Similarity=0.021 Sum_probs=68.9
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc--hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC---HHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS--RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ---EPYLCN 102 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 102 (403)
+..+...+...|++++|++.|+.+.+.. |... ...+..+..++...|++++|...|+.+... .+.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHH
Confidence 4456677778888888888888888776 4322 145667777888888888888888887643 2233 445666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
+..++...|++++|...|+.+.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7778888888888888888877654
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=1.8e-06 Score=65.01 Aligned_cols=133 Identities=13% Similarity=-0.019 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC----chH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP----DKI 169 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 169 (403)
.+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.....+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455556666666666666666665432100 01 13455566666666666666666666543211011 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.+..+...+...|++++|.+.+++..+. +.. .....+..+..++...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777778888887777776532 111 1234566677777778888888877777654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=6.2e-07 Score=63.82 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673 285 NEMMDEAKKVYEGLEENG--CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (403)
.|++++|+..|++.++.+ -+.+...+..+..++...|++++|+..|+++++.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 567777888888877653 12234567777778888888888888888887765 556777777888888888888888
Q ss_pred HHHHHHHHhCC
Q 015673 363 GVIRTIKKKFP 373 (403)
Q Consensus 363 ~~~~~~~~~~~ 373 (403)
..+++..+..|
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888776543
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=8e-06 Score=73.30 Aligned_cols=152 Identities=9% Similarity=-0.013 Sum_probs=95.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------hHHHHHHH
Q 015673 109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-------------KISYGLLL 175 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~ 175 (403)
..+++++|+..|+...+..+ -....+..+...+.+.|++++|+..|++.++.....++ ...|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 33445555544443332221 25677777778888888888888888887753211111 46777888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE 254 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 254 (403)
.+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+-..+ ..++.+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887763 346777778888888888888888888888775321 223333333344 556666
Q ss_pred HHH-HHHHHH
Q 015673 255 RLK-ELIDEM 263 (403)
Q Consensus 255 ~a~-~~~~~~ 263 (403)
++. .++..|
T Consensus 403 ~a~~~~~~~~ 412 (457)
T 1kt0_A 403 ERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 554 334444
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=3e-06 Score=76.39 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=72.5
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
..|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5567777777777766653 2245667777777777777777777777777664 3456667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 015673 329 VFKESVMVHKIPDFNTVKLLVEG--LVKKKKIKEAKGVIR 366 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 366 (403)
.++++++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777776654 3333444444444 666777777777766
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=9.9e-06 Score=59.94 Aligned_cols=97 Identities=12% Similarity=-0.073 Sum_probs=75.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP------NA-----TTFRTWIYHLCGSGNFDKAYKVFKESVMV------ 336 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 336 (403)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556667778888888888888877653110 22 38888888999999999999999998876
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 337 -HKIPDFNTV----KLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 337 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
+ +.+...| .....++...|++++|+..|++..+-
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 4455677 88899999999999999999999873
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=3.2e-06 Score=63.60 Aligned_cols=98 Identities=16% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCC-CchH
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG----TPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLS-PDKI 169 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~ 169 (403)
.+..+...+...|++++|...++...+.. ..+ ....+..+...+...|++++|...+++..+.. +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34455566666666666666666544321 000 13345555666666677777766666654321 111 1134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777788888888888888887654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=9.5e-06 Score=70.48 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC---------------CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG---------------TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN 163 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 163 (403)
.+..+...+.+.|++++|+..|++..+.- -+.+..+|..+..+|.+.|++++|+..+++.++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 36678888889999999999998887610 0012334444444444555555555555544431
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673 164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMEN 196 (403)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (403)
.+.+...|..+..+|...|++++|.+.|+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 122334444444455555555555555554444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=7.1e-06 Score=71.28 Aligned_cols=136 Identities=10% Similarity=0.007 Sum_probs=67.0
Q ss_pred HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673 28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY 107 (403)
Q Consensus 28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (403)
+..+...+.+.|++++|+..|+++++.. +. . . .... .+... ...+.....|..+..+|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~-~-~----------~~~~-------~~~~~-~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG-S-R----------AAAE-------DADGA-KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-H-H----------HHSC-------HHHHG-GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc-C-c----------cccC-------hHHHH-HHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777776522 10 0 0 0000 00000 01112233455555555
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673 108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (403)
.+.|++++|+..++++.+.... +..++..+..+|...|++++|+..|++..+. .+.+...+..+..++...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655554322 4555555555566666666666666555442 122344445555555555555444
Q ss_pred H
Q 015673 188 L 188 (403)
Q Consensus 188 ~ 188 (403)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=4.6e-06 Score=71.63 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=78.2
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS 106 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (403)
.+..+...+.+.|++++|+..|++++... |. ... +...++.+++...+. ...|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~--~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GD--DFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CH--HHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--cc--chh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45566778888889999999998888776 42 111 112223333322221 1256778888
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH-HHhcCChH
Q 015673 107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS-HCDSGSSD 185 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 185 (403)
|.+.|++++|+..|++..+.... +..+|..+..+|...|++++|...|++..+. .+-+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776542 6778888888888888888888888888642 12234445555444 23456677
Q ss_pred HHHHHHHHHHhC
Q 015673 186 KALELLNEMENK 197 (403)
Q Consensus 186 ~a~~~~~~~~~~ 197 (403)
.+.+.|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777888877654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1e-05 Score=61.21 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=67.4
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhcc------CCC---------CcchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHY------ASP---------VSSRYAQDLTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~------~~p---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
...+...+..+.+.|++++|+..|+.++..- ..| +.....|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3467778899999999999999999998861 001 1123445566666666667766666666665
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
. ..+.+...|..+..++...|++++|+..|+...+..
T Consensus 91 ~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 K-REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp H-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred h-cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3 234455556666666666667777766666666543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.1e-06 Score=61.63 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=58.5
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC------HHHH
Q 015673 272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD------FNTV 345 (403)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 345 (403)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 4456666777777777777777777777653 4456667777777777777777777777777544 222 4445
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 015673 346 KLLVEGLVKKKKIKEAKGVI 365 (403)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~ 365 (403)
..+..++...|++++|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555555444443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=9.9e-06 Score=69.54 Aligned_cols=152 Identities=16% Similarity=0.038 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHH
Q 015673 202 TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281 (403)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (403)
....+..+...+.+.|++++|...|++.... .|+...+ ...++..++...+. ...|..+..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~------~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF------QLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH------TCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh------hhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3556777888888999999999999998875 3443211 12333333332221 2367888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 015673 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG-LVKKKKIKE 360 (403)
Q Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 360 (403)
|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 4577889999999999999999999999988654 3345555555555 334566778
Q ss_pred HHHHHHHHHHhCC
Q 015673 361 AKGVIRTIKKKFP 373 (403)
Q Consensus 361 a~~~~~~~~~~~~ 373 (403)
+...|+++.+..|
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 8888888876433
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=7.5e-05 Score=68.65 Aligned_cols=179 Identities=9% Similarity=-0.050 Sum_probs=136.3
Q ss_pred hhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC----------cchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 35 LRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR----------FSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 35 l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
+.+.|+ .++|++.++.++..+ |. ...+|+.-..++...|+ ++++.+.++.+.. ..+.+..+|..-
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n--P~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK~y~aW~hR 113 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN--PD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSYGTWHHR 113 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--ch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 334444 567899999999999 54 55667777777777777 8899999999884 556677788877
Q ss_pred HHHHhccC--CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 104 IRSYGQAG--MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 104 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
..++.+.+ +++++++.++++.+.++. +..+|+.-...+.+.| .++++++.++++++ ..+-|...|+.....+.+
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHh
Confidence 77788888 679999999999998765 8888988888888888 78889999999886 345577778777766655
Q ss_pred c--------------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673 181 S--------------GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 181 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 221 (403)
. +.++++++.++++.... +-+...|..+...+.+.++.++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 3 45688888888887763 3467778877777777666433
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=0.00022 Score=65.56 Aligned_cols=136 Identities=7% Similarity=-0.010 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHH
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE--MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG-NFDKAYKV 329 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 329 (403)
++++.+.++.+.+.. +-+..+|+.-..++.+.+ ++++++..++++.+.+ +-|...|+.-...+.+.| ..+++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 566777777776654 225666666666667777 6688888888888775 457777877777777777 78888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673 330 FKESVMVHKIPDFNTVKLLVEGLVKK--------------KKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA 392 (403)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 392 (403)
++++++.+ +.+...|+.....+.+. +.++++.+.+++... ..|+...+|..+...+...+.
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~-~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF-TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH-HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh-hCCCCccHHHHHHHHHhcCCC
Confidence 88888766 56777777776666653 557889999988887 455667799988888776554
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.00013 Score=53.26 Aligned_cols=111 Identities=10% Similarity=-0.050 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----SGNFDKAY 327 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 327 (403)
++++|...|++..+.| .|+ .. |...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555556666555554 222 12 4445555555556666666665543 44555555555555 55666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 015673 328 KVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 373 (403)
++|++..+.| ++..+..|...|.. .+++++|.+.|++..+...
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666666543 34455555566655 5666666666666655433
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=1.6e-05 Score=58.78 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=61.6
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
..+......+...|++++|+..|+++++.. |..... ++.. ..+.+...|..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~----------------~a~~--------~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE----------------EAFD--------HAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT----------------SCCC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch----------------hhhh--------hccchHHHHHHHHH
Confidence 456677888889999999999999999988 431100 0000 00001124555555
Q ss_pred HHhccCCHHHHHHHHHHHHhC-------CCCCcHHHH----HHHHHHHHhcCCcCcHHHHHHHch
Q 015673 106 SYGQAGMFDHAMRTFDQMDEL-------GTPRSVISF----NALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
++.+.|++++|+..+++.++. .+. +...| .....++...|++++|+..|++..
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555553 321 34455 555666666666666666666554
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=2e-05 Score=58.17 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF----------DKAYKVFKESVMVHKIPDFNTVKLLVEGLVK 354 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (403)
.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344555555555555543 33455555555555554443 36666666666554 4455666666666665
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCchhHHHHHH
Q 015673 355 KK-----------KIKEAKGVIRTIKKKFPPNVLRAWKK 382 (403)
Q Consensus 355 ~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 382 (403)
.| ++++|++.|++..+ ..|+....|..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~~y~~a 130 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKS 130 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-hCCCCHHHHHH
Confidence 53 67777777777666 33333334443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=5.1e-05 Score=53.41 Aligned_cols=78 Identities=14% Similarity=0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
|...|++..+.. +.+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444332 2234444444444555555555555555544433 33344444445555555555555555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=1.5e-05 Score=71.61 Aligned_cols=89 Identities=7% Similarity=-0.033 Sum_probs=43.0
Q ss_pred hhccCChHHHHHHHHHhhhccCC-----CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-------CCCCCCHHHHHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYAS-----PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-------DPKITQEPYLCN 102 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ 102 (403)
+..+|++++|+.++++.++.... .+....+++.++..|...|++++|..++++... ...+.....++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655442211 111333445555555556666655555554432 111112223455
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 015673 103 LIRSYGQAGMFDHAMRTFDQM 123 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~ 123 (403)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555544
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=9.7e-05 Score=49.18 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+..+...+...|++++|+..+++.++.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444444432 23344444444444455555555555544444
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.4e-05 Score=55.76 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc------HHHH
Q 015673 62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS------VISF 135 (403)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 135 (403)
...+..+...+...|++++|...|++... ..+.+...+..+..++...|++++|+..|++..+..+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT-AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 34455666677777777777777777663 23445566677777777778888888888777765432 2 4455
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHch
Q 015673 136 NALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 136 ~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
..+..++...|+++.|...++++.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhH
Confidence 666666777777777766665553
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=3.2e-05 Score=54.49 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673 96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
+...+..+..++...|++++|+..|++..+..+. +...|..+..++...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444445555555554444443321 33444444444444444444444444443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00047 Score=50.31 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHH
Q 015673 218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAK 292 (403)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 292 (403)
++++|+..|++..+.+ .++.. +-..+ ..+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 22223 4455666777777766654 55566666667766 67777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCC
Q 015673 293 KVYEGLEENGCSPNATTFRTWIYHLCG----SGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 337 (403)
.+|++..+.| +...+..+...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 45566666666766 677777877777777765
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=5.6e-05 Score=67.88 Aligned_cols=125 Identities=7% Similarity=0.052 Sum_probs=69.3
Q ss_pred HhccCCHHHHHHHHHHHHhC-----CC-CC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC----C-CCCc-hHHHHH
Q 015673 107 YGQAGMFDHAMRTFDQMDEL-----GT-PR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY----N-LSPD-KISYGL 173 (403)
Q Consensus 107 ~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~ 173 (403)
+...|++++|+.++++..+. |. .| ...+++.|..+|...|++++|..++++.++.. | ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777665432 11 01 23456666667777777777766666654321 1 1122 345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 174 LLKSHCDSGSSDKALELLNEMENK-----GV--EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
|...|...|++++|..++++..+. |. +....+...+..++...+.+++|..++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666665421 21 11223334455555566666666666666654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=0.00018 Score=47.88 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673 271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350 (403)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (403)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35677888899999999999999999998764 4567888899999999999999999999998865 556777777777
Q ss_pred HHHhcC
Q 015673 351 GLVKKK 356 (403)
Q Consensus 351 ~~~~~g 356 (403)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=5.2e-05 Score=51.91 Aligned_cols=62 Identities=13% Similarity=-0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673 97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
...+..+..++...|++++|+..|+++.+.++. +...|..+..+|...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444455555555555555554443322 33444444444555555555554444443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=5.1e-05 Score=56.01 Aligned_cols=101 Identities=13% Similarity=0.016 Sum_probs=70.1
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcc----------hHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFS----------DIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
...+.+.+++|++.++...+.+ |. +...|..+..++...++++ +|+..|++... -.|.....|..+
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~--P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~~~~A~~~L 86 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN--PL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPKKDEAVWCI 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcCcHHHHHHH
Confidence 3456678999999999999998 54 6677777888888887765 77777777764 344555666677
Q ss_pred HHHHhccC-----------CHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 104 IRSYGQAG-----------MFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 104 ~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
..+|...| ++++|++.|++..+.. |+...|...+.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 77776653 6777777777777643 55444444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00024 Score=48.45 Aligned_cols=62 Identities=15% Similarity=-0.024 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
...+..+..++...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444455555555544444433 2333444444444555555555555444443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00089 Score=45.30 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
...+...|++++|...++++.+.. +.+.. .+..+..++...|++++|+..|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455555566666555555442 22344 55555555555555555555555555443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0098 Score=50.53 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCCcC--cH---HHHHHHch
Q 015673 93 KITQEPYLCNLIRSYG--QA---GMFDHAMRTFDQMDELGTPRSVISFNALLFACTR---SRLYD--KV---PILFDEIP 159 (403)
Q Consensus 93 ~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~--~a---~~~~~~~~ 159 (403)
.+.+...|...+++.. .. .+..+|+.+|++..+..+. ....|..+..+|.. .+... .. ...+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3445555655554432 22 3357888888888886532 34455544444321 11111 00 11111111
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH
Q 015673 160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA 239 (403)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (403)
.....+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|...+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 111235567777777776777788888888888888864 67777777778888888888888888888776 45655
Q ss_pred HHHHH
Q 015673 240 AYNVR 244 (403)
Q Consensus 240 ~~~~l 244 (403)
+|...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.00035 Score=47.36 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFN-TVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
....+...|++++|+..++++++.. +.+.. .+..+..+|...|++++|.+.|++..+..|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456677788888888888877655 44556 777777788888888888888888776444
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.31 E-value=0.0025 Score=42.58 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673 304 SPNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP 374 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (403)
+.|...+..+..++...++ .++|..++++.++.+ +.++.....+...+.+.|++++|+..|+++.+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666667666654443 577888888877766 566777777777788888888888888887775544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.00061 Score=60.13 Aligned_cols=87 Identities=9% Similarity=-0.060 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHH
Q 015673 38 EFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIR 105 (403)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~ 105 (403)
.|++++|+.++++.++.. ...+....+++.++.+|...|++++|..++++... ...+.....++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 455566666665554321 11111233445555555555665555555555432 111111223455555
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMD 124 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~ 124 (403)
.|...|++++|+.+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5555555555555555543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0073 Score=51.32 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673 304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP 373 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (403)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.....|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4455566655555555566666666666666654 5555555566666666666666666666655333
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0034 Score=45.82 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 015673 287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVHKIP--DFNTVKLLVEGLVKKKKIKEA 361 (403)
Q Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 361 (403)
....+.+-|.+..+.| .++..+.-.+..++++++ ++++++.++++..+.+ .| ....+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666777766666 478888888888899888 6668999999888765 34 456677788888999999999
Q ss_pred HHHHHHHHHhCCch
Q 015673 362 KGVIRTIKKKFPPN 375 (403)
Q Consensus 362 ~~~~~~~~~~~~~~ 375 (403)
.+.++.+.+..|.+
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999998855544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0015 Score=57.80 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC-----CC-CCc-HHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQMDEL-----GT-PRS-VISFNALLFACTRSRLYDKVPILFDEI 158 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 158 (403)
++.|+..|...|++++|+.+++++.+. |. .|+ ..+++.|...|...|++++|+.++++.
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444455555555444443321 10 011 223444444455555555555444443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.012 Score=56.88 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=23.8
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
...|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555544331 3445555555555555555555555554
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.08 E-value=0.006 Score=41.73 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=29.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673 274 SYNFLMTCYCKNEMMDEAKKVYEGLEENG------CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM 335 (403)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (403)
-+..|...+.+.|++..|...|+...+.- -.+...++..+..++.+.|+++.|+..++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555555555555544310 012233444444455555555555555544443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.02 E-value=0.0044 Score=54.70 Aligned_cols=92 Identities=7% Similarity=-0.073 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CC-CC-CHHH
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENG---CSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMV-----HK-IP-DFNT 344 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 344 (403)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.++++++.. |- .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888887776421 1222 346777777888888888888887776543 20 12 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 345 VKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67778888888888888888887754
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.00 E-value=0.023 Score=39.94 Aligned_cols=141 Identities=14% Similarity=0.018 Sum_probs=80.1
Q ss_pred hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
+...|..++..++..+..... +..-++.++--....-+-+-..++++.+-.... ...+|+..
T Consensus 17 ~ildG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-------------is~C~NlK 78 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-------------LDKCQNLK 78 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------GGGCSCTH
T ss_pred HHHhhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------cHhhhcHH
Confidence 344577777777777766655 233344455444455555555555555432111 11233444
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
.....+-.+- .+.......+..+...|.-+...+++..+.. ..+|++...-.+..+|.+.|+..+|.+++.++
T Consensus 79 rVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 79 SVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3333333332 2444555556666677777777777777544 45566677777777777777777777777777
Q ss_pred HhCCCC
Q 015673 195 ENKGVE 200 (403)
Q Consensus 195 ~~~~~~ 200 (403)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777663
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.002 Score=56.87 Aligned_cols=87 Identities=7% Similarity=-0.118 Sum_probs=63.3
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CC-CC-CHHHHHHHH
Q 015673 284 KNEMMDEAKKVYEGLEEN---GCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMV-----HK-IP-DFNTVKLLV 349 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 349 (403)
..|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|..++++.+.. |- .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888876531 11222 347888888899999999998888887653 21 12 235678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015673 350 EGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~ 370 (403)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.094 Score=39.29 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=64.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (403)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 344677777777776655 3666777777777777777777777777732 344555555567766
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE 228 (403)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (403)
.-.++-+.....|- ++....++...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555555544432 34445556667777777777754
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.80 E-value=0.069 Score=43.57 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 015673 168 KISYGLLLKSHCDS-----GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ-GNAEEAERLWSEMEKKGVD 235 (403)
Q Consensus 168 ~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~ 235 (403)
-..|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++.+.....
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34556666666653 66666666666666543222345555555555553 6666666666666665444
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.78 E-value=0.016 Score=38.54 Aligned_cols=21 Identities=5% Similarity=-0.165 Sum_probs=7.9
Q ss_pred HHHHHHhcCCcCcHHHHHHHc
Q 015673 138 LLFACTRSRLYDKVPILFDEI 158 (403)
Q Consensus 138 ll~~~~~~~~~~~a~~~~~~~ 158 (403)
+...+.+.|++++|+..|+.+
T Consensus 49 lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 49 IANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.057 Score=52.11 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=66.0
Q ss_pred hccCCHHHHHH-HHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH
Q 015673 108 GQAGMFDHAMR-TFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK 186 (403)
Q Consensus 108 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (403)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .-.......|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHH
Confidence 45677888766 44221 112233666677777777777776553221 11233456799999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 98886533 3668899999999999999999999988643
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.63 E-value=0.028 Score=39.39 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 015673 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK---AYKVFKESVMVHKIP--DFNTVKLLVEGLVK 354 (403)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 354 (403)
...........+.+-|.+....| .++..+--.+..++.++.+... ++.+++++...+ .| .......|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 33333445566677777666656 4778887788889999887665 889999988765 23 44566678889999
Q ss_pred cCCHHHHHHHHHHHHHhCCch
Q 015673 355 KKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.|++++|.+.++.+.+.-|.+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999855544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.63 E-value=0.029 Score=38.23 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKG------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
+...+..+...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556667777777777777777777665431 1234556677777777777777777777777765
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.47 E-value=0.054 Score=39.02 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=79.0
Q ss_pred cccchhHHHHHhhhhccCCh------HHHHHHHHHhhhccCCCCcchhhHHHHHH------HHHhcCCcchHHHHHHHhh
Q 015673 22 TASSISVSKAKSKLRSEFDP------DKALDIYSSVSKHYASPVSSRYAQDLTVR------RLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 22 ~~~~~~~~~l~~~l~~~~~~------~~A~~~~~~~~~~~~~p~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~ 89 (403)
|.+..+|...+..+-+.|++ ++.+++|+++...- |+.....|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667888888888888999 89999999998765 3221111111111 1234488999999999986
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673 90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF 140 (403)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 140 (403)
.. ...-..+|......-.+.|+...|.+++......+.+| ...+...+.
T Consensus 88 ~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 88 AN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 54 33336677777888888999999999999999887764 334444333
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.14 E-value=1 Score=43.46 Aligned_cols=294 Identities=7% Similarity=-0.029 Sum_probs=161.0
Q ss_pred HHHhhhhccCChHHH-HH-HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH--HHHHH
Q 015673 30 KAKSKLRSEFDPDKA-LD-IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL--CNLIR 105 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A-~~-~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~ 105 (403)
...+++...|-..+. +. ..+|+.+.. + ....-....-.....|+.+++..++..........+...- ..+.-
T Consensus 344 ~f~Naf~naG~~~D~~l~~~~~Wl~k~~--~--~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 344 SVANGFMHAGTTDNSFIKANLPWLGKAQ--N--WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHTTTTCCCHHHHHCHHHHHHCC--T--HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhcchhhhhccc--h--HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 456666666654332 22 223444433 2 2222234445577889999999999888743212232222 22444
Q ss_pred HHhccCCHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHhcCCc-CcHHHHHHHchhhCCCCCch--HHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMDELGT-------PRSVISFNALLFACTRSRLY-DKVPILFDEIPKKYNLSPDK--ISYGLLL 175 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 175 (403)
+....|..+++..++.......- .+....-..+.-++.-.|.- +++...+..+..... +.. ..-..+.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHh
Confidence 45556665678887776554221 11223333444444444433 356666666654311 111 1222344
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh--hh-cC
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN--CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT--NT-YG 250 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~-~~ 250 (403)
..++..|+.+....++..+.+. . +..+...+.. ++...|+.+.+..+++.+... ..|....-..+.. +| ..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~-~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQET-Q--HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 5566778888888888877664 2 2233333433 444678888888888888764 1233322222222 33 67
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHH
Q 015673 251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF-DKAYKV 329 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~ 329 (403)
|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++..
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 88877777998888642 2233333344445556777777788887776654 44444333444444445443 678888
Q ss_pred HHHHHh
Q 015673 330 FKESVM 335 (403)
Q Consensus 330 ~~~~~~ 335 (403)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888864
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.13 E-value=0.00068 Score=59.06 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=158.0
Q ss_pred cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673 24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL 103 (403)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (403)
.+..|..+..+....++..+|++.|-++ + ++..|..++....+.|.+++-+..+....+....+. +=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHH
Confidence 3567888899999999999888876322 2 334567888999999999999999887765433333 33679
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC-------------------CC
Q 015673 104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY-------------------NL 164 (403)
Q Consensus 104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~~ 164 (403)
+.+|++.++..+-.++ .. .|+......+..-|...|.++.|.-+|..+..-. .-
T Consensus 123 i~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886553322 22 2676677788888888888888888777663211 01
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673 165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR 244 (403)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (403)
.-+..||..+-.+|...+.+..|.-.--.+.-. ......++..|-..|.+++.+.+++..... -......|+-+
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 235667888888888888877665443333221 112223555677788888888888776643 23456666666
Q ss_pred HhhhcCCChHHHHHHHHHHHHC-CCCC------ChhcHHHHHHHHHhcCChHHHH
Q 015673 245 ITNTYGGDPERLKELIDEMRDA-GLKP------DTISYNFLMTCYCKNEMMDEAK 292 (403)
Q Consensus 245 l~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~ 292 (403)
--.+..-.+++..+.++..-.+ +++- ....|.-++-.|.+..+++.|.
T Consensus 270 aILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6555555666655555543221 1110 2345666777777777777654
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.12 E-value=0.064 Score=39.09 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 015673 202 TTVTYTTVLNCLYKQG---NAEEAERLWSEMEKK 232 (403)
Q Consensus 202 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 232 (403)
+..+...+..++++++ +.++++.+|+...+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 4444444444444444 333444444444443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.29 Score=36.64 Aligned_cols=44 Identities=9% Similarity=-0.049 Sum_probs=19.9
Q ss_pred hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 015673 74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM 123 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 123 (403)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444433 12334444444444444444444444444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.00 E-value=0.15 Score=36.85 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
+++++|.++|+.+.+.+-.- ...|....+.-.+.|+.+.|.+++...+..+.. +...+...+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 67777777777776553332 566666666667778888888888777776543 333344444443
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.77 E-value=0.31 Score=34.41 Aligned_cols=66 Identities=26% Similarity=0.258 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673 168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234 (403)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (403)
.......+......|.-+.-.+++..+... .+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334455555566666666666666664332 345556666666666666666666666666666554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.57 E-value=0.14 Score=41.88 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHCCCCCC---hhcHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCh
Q 015673 253 PERLKELIDEMRDAGLKPD---TISYNFLMTCYCKN-----EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS-GNF 323 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 323 (403)
...|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666777777765 444 45677888888874 89999999999988864222366777778888774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 324 DKAYKVFKESVMVHKI--PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+++.+.+++.+..... |+....+. +.-++|..++.++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 9999999988877644 54333222 223456666655543
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.36 E-value=1.2 Score=38.43 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=117.1
Q ss_pred hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhc-CCcchHHHHHHHhhcCCCCCCHHHH--
Q 015673 26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKS-KRFSDIETLIESHKNDPKITQEPYL-- 100 (403)
Q Consensus 26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 100 (403)
.....+...|.+.|+.++..+++......-..... .......++..+... +..+.-.++..+..+........++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788888889998888888777543311111 222234555555543 2233333333333211111111111
Q ss_pred ---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhC-CCCCchHHH
Q 015673 101 ---CNLIRSYGQAGMFDHAMRTFDQMDELGTPRS-----VISFNALLFACTRSRLYDKVPILFDEIPKKY-NLSPDKISY 171 (403)
Q Consensus 101 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 171 (403)
..++..|...|++.+|.+++..+.+.=.+.| ...+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2477888888888888888877765211112 2334555666777788888877776664321 121232222
Q ss_pred HH----HHHHHH-hcCChHHHHHHHHHHHhC----CCC--CchhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCchH
Q 015673 172 GL----LLKSHC-DSGSSDKALELLNEMENK----GVE--VTTVTYTTVLNCLYKQGNAEEAERLWS-EMEKKGVDLDVA 239 (403)
Q Consensus 172 ~~----l~~~~~-~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 239 (403)
.. -...+. ..++|..|...|-+..+. +.+ .+...|..+ +..-.++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhccccccccCCccHH
Confidence 11 123344 677788777776655321 110 011122111 2222233323222221 111111245555
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHH
Q 015673 240 AYNVRITNTYGGDPERLKELIDEM 263 (403)
Q Consensus 240 ~~~~ll~~~~~~~~~~a~~~~~~~ 263 (403)
.+..++.++..+++.....+++..
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 566666666667776666666554
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.85 E-value=4e-06 Score=72.53 Aligned_cols=262 Identities=8% Similarity=0.004 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673 63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142 (403)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 142 (403)
..|..+..+....+++.+|++-| .+.. ++..|..+|....+.|.+++-++.+...++..- +...=+.|+.+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 44555666666666665555432 1112 222355566666666666666666555544321 333334556666
Q ss_pred HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673 143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222 (403)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 222 (403)
++.++..+..++ -..||..-...+..-|...|.++.|.-+|..+ .-|.-|..++.+.|++..|
T Consensus 127 Ak~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence 666665443222 11244444455566666666666655544422 1223334445555666555
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673 223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
.+.-++ ..++.+|..+..+| ..+.+..|.-.--.+.- . ..-...++..|-..|.+++-+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---h--adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H--ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---C--SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---c--HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 433222 24566777777777 66666655544433332 1 122334666777788888888888776643
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
. ......|+-|.-.|++- +.++.++.++..-++ .+. ..++++|.+..-|.++.-++...
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iNi---pKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VNI---PKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SCC---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---ccH---HHHHHHHHHHhhHHHHHHHHhcc
Confidence 2 45666777777777764 455555554432221 111 12677888888888887776654
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=2.4 Score=37.52 Aligned_cols=49 Identities=4% Similarity=0.074 Sum_probs=24.3
Q ss_pred CCcchHHHHHHHhhc-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 015673 76 KRFSDIETLIESHKN-----DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMD 124 (403)
Q Consensus 76 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 124 (403)
|+++.|.+.+..+.+ ............++..|...++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455555555433321 1222333445556666666666666655554443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.23 Score=46.87 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=77.4
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchhhC-----CCCCc-h----
Q 015673 101 CNLIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPKKY-----NLSPD-K---- 168 (403)
Q Consensus 101 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~~-~---- 168 (403)
..++..+...++ .+.|+.+|+.+.+.++.-+......++..+...++ --+|.+++.+..+.. ..++. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445666655666 57788888888775532222222233333333322 123455554443210 11111 1
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 169 ------ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
.....-...+...|+++.|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222245566789999999999998876 4556789999999999999999999888887
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.86 Score=43.02 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=82.9
Q ss_pred HHHHHhhhhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhc-------CCCCCCH-
Q 015673 28 VSKAKSKLRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR-FSDIETLIESHKN-------DPKITQE- 97 (403)
Q Consensus 28 ~~~l~~~l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-------~~~~~~~- 97 (403)
...++..+...++ .+.|+.+|+++.+.. |.........++..+...++ --+|.+++.+... .....+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555666 588999999999887 54333322233333333321 2234444444321 1111111
Q ss_pred ---------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673 98 ---------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159 (403)
Q Consensus 98 ---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 159 (403)
..+..=...+...|+++-|+++-++.....+. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12233345567789999999999999886542 68899999999999999999999999885
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.30 E-value=2.9 Score=42.11 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673 67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR 146 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 146 (403)
.++..+...+..+.+.++...+. .+...--.+..++...|++++|.+.|.+... |+..+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~------------- 877 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTS------------- 877 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCC-------------
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccch-------------
Confidence 45555666677766666554432 1222223466677777788888777766532 1111100
Q ss_pred CcCcHHHHHHHchhhC-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hhhHHHHHHHHHhcCCHHH
Q 015673 147 LYDKVPILFDEIPKKY-NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT----TVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 147 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 221 (403)
... ...-+..+.... ....-..-|..++..+.+.+.++.+.++-....+...+.+ ...|..+.+++...|++++
T Consensus 878 l~~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 878 QFA-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SCS-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhh-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 000000110100 0011123456666666677777777666665554321111 1245666677777777777
Q ss_pred HHHHHHHHHHc
Q 015673 222 AERLWSEMEKK 232 (403)
Q Consensus 222 a~~~~~~~~~~ 232 (403)
|...+..+...
T Consensus 957 Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 957 AHVALMVLSTT 967 (1139)
T ss_dssp GGHHHHHHHHS
T ss_pred HHHHHHhCCCH
Confidence 76666655543
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.26 E-value=0.22 Score=34.91 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=10.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
|.-++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.84 E-value=4.1 Score=37.69 Aligned_cols=311 Identities=11% Similarity=0.075 Sum_probs=153.1
Q ss_pred hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH-HHHHHHHHhccCC
Q 015673 34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY-LCNLIRSYGQAGM 112 (403)
Q Consensus 34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 112 (403)
...+.|+++.+..+...+.. + |...-..|..+...+ .....++....+... +..|-... -...+..+.+.++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~-~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKD-Y--PLYPYLEYRQITDDL-MNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTT-S--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhhcC-C--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhCCC
Confidence 34456788777776555432 2 321222222222111 122344444444433 33333322 2446666777778
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH--HHHH
Q 015673 113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK--ALEL 190 (403)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~ 190 (403)
+...+..+.. .+.+...-.....+....|+..+|......+-... ......+..++..+.+.|.... ...=
T Consensus 88 w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 88 WRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 7776664443 12344444555666667777666666555554321 2234456667777666555433 2222
Q ss_pred HHHHHhCC-----------CCCchhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH---HhhhcCCChHH
Q 015673 191 LNEMENKG-----------VEVTTVTY-TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR---ITNTYGGDPER 255 (403)
Q Consensus 191 ~~~~~~~~-----------~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~ 255 (403)
++.+...| ++++.... ..++..+. +...+..... . ..++...-..+ +..+...+.+.
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar~d~~~ 232 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAEN 232 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHhcCHHH
Confidence 22222222 11111111 11111111 1111111111 1 12222221222 22224457888
Q ss_pred HHHHHHHHHHCCCCCChhcHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 256 LKELIDEMRDAGLKPDTISYNF----LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
|...+....... ..+...... +.......+...++...+...... ..+.....-.+....+.|+++.|...|+
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888876543 223332222 222233344345666666665543 3444444444555557799999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 332 ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.|.... ........-+..++...|+.++|..+|+++.+
T Consensus 310 ~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 310 RLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 876532 22344455567788888999999999988875
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.80 E-value=0.55 Score=34.60 Aligned_cols=65 Identities=8% Similarity=-0.048 Sum_probs=46.5
Q ss_pred chhHHHHHhhhhccCChHHHHHHHHHhhhccC-CCC-----cchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673 25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYA-SPV-----SSRYAQDLTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~p~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
.-.+..-+..+...|.++.|+-+.+.+....- .|. .-..++..+++++...+++..|...|++..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34566778899999999999988888654331 121 112245667888999999999999999853
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.79 E-value=2 Score=43.27 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=87.5
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ 109 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (403)
.++..+...+.++-|.++..+... ..... ..++.++...|++++|.+.|++... +........
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~--------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAV-YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF--------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC------CHHHH-HHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC------CcHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------
Confidence 456667777888888776655432 12233 4678899999999999999998753 211111000
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-c--hHHHHHHHHHHHhcCCh
Q 015673 110 AGMFDHAMRTFDQMDELG--TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-D--KISYGLLLKSHCDSGSS 184 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~ 184 (403)
..... +..+.... ...-..-|..++..+-+.+.++.+.++-...++..+..+ + ...|..+.+++...|++
T Consensus 880 -~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 880 -AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 00000 01111100 011223455555556666666665555554443311111 1 12456666666666777
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 221 (403)
++|...+-.+..... -......++..+|..|..+.
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 776666666655433 23444555555555554443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.65 E-value=0.98 Score=29.93 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
+.=+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+..+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~ 78 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 78 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 444677777777777888888888888888888888888888888887664433
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.60 E-value=0.61 Score=40.45 Aligned_cols=73 Identities=10% Similarity=-0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTVKLL 348 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 348 (403)
...++..+...|+.++|...+..+.... +.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456677778888888888888877654 56777888888888888888888888877644 3778877764433
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.75 E-value=1.6 Score=30.76 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 304 SPNATTFRTWIYHLCGSGNF---DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.|+..+--.+..++.++.+. .+++.+++++.+.+.......+..+.-++.+.|++++|.+..+.+.+.-|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 56666666667777776554 4677777777765521235566667778888888888888888887744333
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.64 E-value=2.9 Score=36.22 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-----KGVDLDVAAYNV 243 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 243 (403)
....++..+...|+++++...+..+... .+.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456677888899999999999888776 456888999999999999999999999988654 477887765433
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=5.4 Score=35.24 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHH
Q 015673 276 NFLMTCYCKNEMMDEAKKVYEGLEE--NGCSPN---ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIPD--FNT 344 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~ 344 (403)
..|...|...|++.+|..++..+.. .|.... ...+...++.|...+++..|..+++++... ..+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3455566666666666666666542 121111 123444455666666666666666654321 11111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673 345 VKLLVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555666666666665555554
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.36 E-value=2 Score=30.17 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
|.=+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-++.+..+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 344566777777777888899988888999999999999999998888765433
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.94 E-value=2.4 Score=28.13 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673 112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161 (403)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 161 (403)
+.=+..+-++.+...+..|++....+.+.+|.+.+++..|.++++.+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33344444445544455555555555555555555555555555555443
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.20 E-value=1.9 Score=30.79 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=41.2
Q ss_pred chhhHHHHHHHHHhcCC---cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 61 SRYAQDLTVRRLAKSKR---FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 61 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
+..+-....-+++++.+ ..+++.+++.+..............|.-++.+.|++++|.+..+.+.+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444445556666654 34577777777653332334444457777778888888888888887744
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.59 E-value=8.4 Score=32.28 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHH----HHHHhCCCCCcHHHHHHHH
Q 015673 64 AQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF----DQMDELGTPRSVISFNALL 139 (403)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~ll 139 (403)
.|..+...|.+.+++++|++++-.-. ..+.+.|+...|-++. +-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44556666778888888887755432 2233456655554433 4455567777777777777
Q ss_pred HHHHhcCCcCc-HHHHHHHch----hhC-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 015673 140 FACTRSRLYDK-VPILFDEIP----KKY-NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCL 213 (403)
Q Consensus 140 ~~~~~~~~~~~-a~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 213 (403)
..+.....-+- =..+.+.++ +.. ...-|......+...|.+.+++.+|...|- .|..++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 66655443221 111222221 110 122355666777777777777777776662 13333335555554444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHH
Q 015673 214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMR 264 (403)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~ 264 (403)
...+... .++......++..+..++...|..+++...
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333211 223334444454456777777777666554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.41 E-value=2.5 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
.+.+.-..+..+|.+.|++++|+.+++.+..
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3445555688899999999999999988754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.39 E-value=3.1 Score=36.59 Aligned_cols=123 Identities=7% Similarity=-0.060 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC--CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 015673 41 PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPYLCNLIRSYGQAGMFDHAMR 118 (403)
Q Consensus 41 ~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 118 (403)
.++-.+......+....-.....++..++..+.+.|+++.|.+.|.++... +.......+...++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444433111223345578899999999999999999998653 233334567778999999999999999
Q ss_pred HHHHHHh---CCCCCcHHHHH--HHHHHHHhcCCcCcHHHHHHHchhhCC
Q 015673 119 TFDQMDE---LGTPRSVISFN--ALLFACTRSRLYDKVPILFDEIPKKYN 163 (403)
Q Consensus 119 ~~~~~~~---~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~ 163 (403)
.+.++.. .+..|+...-. .-...+...+++..|...|-+....+.
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 9988753 23223322211 111224457889999888888766543
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.32 E-value=8.4 Score=31.96 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCCCchHHHHHHHHHHHhcCChH-HHHHHHHHHH----hCC--CCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 163 NLSPDKISYGLLLKSHCDSGSSD-KALELLNEME----NKG--VEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
+.+++......++..+.....-+ .-.++++++. +.| ..-++.....+...|.+.|++.+|...|
T Consensus 87 ~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 87 EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 55666655555555554432111 1223333332 111 1124445555555555555555555444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.72 E-value=4.9 Score=35.32 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 171 YGLLLKSHCDSGSSDKALELLNEMENKG--VEVTTVTYTTVLNCLYKQGNAEEAERLWSEM 229 (403)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (403)
...+...|.+.|+++.|.+.|.++.... ...-...+-..++.+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555555554321 1112233444455555555555555555544
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.61 E-value=2.2 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=11.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEEN 301 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~ 301 (403)
|..++.+.|++++|.+..+.+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444444444444444444443
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.34 E-value=20 Score=34.97 Aligned_cols=295 Identities=8% Similarity=-0.020 Sum_probs=160.2
Q ss_pred HHHHHHHHhcCCcchH-HHHHHHhhcCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 015673 66 DLTVRRLAKSKRFSDI-ETLIESHKNDPKITQEPYL-CNLIRSYGQAGMFDHAMRTFDQMDELG--TPRSVISFNALLFA 141 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~ 141 (403)
..+..++...|--.+. .......... . .+..-+ ....-+....|+.++++.+++.....+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 4567888888865443 2222222211 1 222222 334445667899999988888766421 11223333444445
Q ss_pred HHhcCCcCcHHHHHHHchhhCCC------CCchHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCch--hhHHHHHH
Q 015673 142 CTRSRLYDKVPILFDEIPKKYNL------SPDKISYGLLLKSH--CDSGSSDKALELLNEMENKGVEVTT--VTYTTVLN 211 (403)
Q Consensus 142 ~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~ 211 (403)
....|..+++..++......... .+....-..+.-+. .-.++ +++.+.+..+....- +.. ..-.++..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 56666666788777776554110 01122223333333 33444 455666666554321 111 11223344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHHHHHCCCCCChhcH--HHHHHHHHhcC
Q 015673 212 CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDEMRDAGLKPDTISY--NFLMTCYCKNE 286 (403)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 286 (403)
.+.-.|+.+....++..+.+.. +......+..++ ..|+.+.+..+++.+.... .|....- .++.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888777642 222333233332 6789999999999887642 2332222 23445677888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 015673 287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVI 365 (403)
Q Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 365 (403)
+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 9877777888887642 2233333333335556777777788887666544 45554444455555555554 5677788
Q ss_pred HHHHH
Q 015673 366 RTIKK 370 (403)
Q Consensus 366 ~~~~~ 370 (403)
..+.+
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77764
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.29 E-value=5.5 Score=28.48 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673 304 SPNATTFRTWIYHLCGSGNF---DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN 375 (403)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (403)
.|+..+--.+..++.++.+. .+++.+++++...+..........|.-++.+.|++++|.++.+.+.+.-|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 56777777777788887654 4688888888775522345566677889999999999999999998854444
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.19 E-value=10 Score=31.48 Aligned_cols=192 Identities=12% Similarity=0.021 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 015673 40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119 (403)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 119 (403)
..++.+.-++.-++.|- .......|..+...|.+.+++++|++++..-. ..+.+.|+...|-++
T Consensus 12 ~~~r~l~rl~~~I~~G~-yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DL 75 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGD-YYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDL 75 (312)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHH
Confidence 34455555555555441 11233344566667778888888888765532 223455776665553
Q ss_pred ----HHHHHhCCCCCcHHHHHHHHHHHHhcCCcC-cHHHHHHHchh---hCC--CCCchHHHHHHHHHHHhcCChHHHHH
Q 015673 120 ----FDQMDELGTPRSVISFNALLFACTRSRLYD-KVPILFDEIPK---KYN--LSPDKISYGLLLKSHCDSGSSDKALE 189 (403)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (403)
++...+.+.+++......++..+.....-+ .-.++++.+++ +.| ..-++..+..+...|.+.|++.+|..
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 455566678888888888887776643222 22334443331 111 22367788899999999999999888
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 015673 190 LLNEMENKGVEVTTVTYTTVLNCLYKQ---GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRD 265 (403)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~ 265 (403)
.|-. |..-|...+..++.-+... |...++ +......++..+..++...|..+++...+
T Consensus 156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7742 1111345555555444443 333222 22233344444477888888888887653
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.72 E-value=5.9 Score=31.90 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673 280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH 337 (403)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (403)
....+.|.+++|+.....-++.. +-|...-..+++.+|-.|+++.|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34556788888888777776664 5577777778888888888888888777766544
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.46 E-value=13 Score=32.02 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 015673 98 PYLCNLIRSYGQAGMFDHAMRTFDQMD 124 (403)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 124 (403)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567777777777777777776654
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.38 E-value=5.9 Score=27.91 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 314 (403)
|.-+..+-++.+...++.|++....+.+++|.+.+|+..|.++|+-+..+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555666666667778888888888888888888888888888777432 23344565555
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.25 E-value=3 Score=37.26 Aligned_cols=66 Identities=12% Similarity=0.002 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch--HH-HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673 132 VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK--IS-YGLLLKSHCDSGSSDKALELLNEMENK 197 (403)
Q Consensus 132 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (403)
...+|.+++.|...+.++.|..+..+..--....+|. .. +.-+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5678899999999999999999999873100101121 12 233466677889999999999988765
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.40 E-value=4.1 Score=32.78 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=35.7
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673 71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127 (403)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 127 (403)
.+.+.|+++++++....-.+ ..|.+...-..|+..+|-.|+++.|.+-++...+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR-~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK-ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH-TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34566777777766666553 445555555567777777777777777777666543
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.84 E-value=11 Score=30.42 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=9.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCC
Q 015673 250 GGDPERLKELIDEMRDAGLKPD 271 (403)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~ 271 (403)
.++.....++++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3333333444445555544433
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.34 E-value=26 Score=26.77 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=42.2
Q ss_pred CchHHHHHHHhhh-c--CCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673 236 LDVAAYNVRITNT-Y--GGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 236 ~~~~~~~~ll~~~-~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (403)
.|......-+... . .+......++|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3444444444444 2 4446667777777766654332 33455566666677777777777777776665553
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.06 E-value=41 Score=28.21 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCchHHHHHHH
Q 015673 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL----WSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 245 (403)
+|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445555555666666665554322 2235566766554444 34555667777777766666
Q ss_pred hhh-cC--CChHHHHHHHHHHHH----CC--CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015673 246 TNT-YG--GDPERLKELIDEMRD----AG--LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH 316 (403)
Q Consensus 246 ~~~-~~--~~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (403)
..+ .. ...+. ..+++.+.+ .| ..-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-
T Consensus 102 ~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 102 GCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHH
Confidence 666 22 22222 333333321 12 12244555666777777777777766662 2 212333555444433
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 317 LCGSGNFDKAYKVFKESVMVHKIPDFNTV-KLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+...+.. .+...| ...+-.|...++...|..+++.+.+
T Consensus 177 w~~~~~~----------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 177 WYKQDES----------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTSCG----------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCC----------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3332221 112222 2233456667888888888777664
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.83 E-value=40 Score=33.23 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch----HHHHHHHHHHHhcC
Q 015673 134 SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK----ISYGLLLKSHCDSG 182 (403)
Q Consensus 134 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 182 (403)
-|..++..+-+.+-++-+.++-+..++... .-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 567788888888888877777776665321 1122 34666666666544
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.27 E-value=18 Score=23.89 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=3.0
Q ss_pred cCChHHHH
Q 015673 320 SGNFDKAY 327 (403)
Q Consensus 320 ~~~~~~a~ 327 (403)
.|++++|.
T Consensus 52 rG~Yq~Al 59 (115)
T 2uwj_G 52 QGRYQEAL 59 (115)
T ss_dssp TTCHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.30 E-value=20 Score=23.80 Aligned_cols=8 Identities=13% Similarity=-0.143 Sum_probs=2.9
Q ss_pred cCChHHHH
Q 015673 285 NEMMDEAK 292 (403)
Q Consensus 285 ~~~~~~A~ 292 (403)
.|++++|.
T Consensus 53 rG~Yq~Al 60 (116)
T 2p58_C 53 RGDYASAL 60 (116)
T ss_dssp TTCHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.56 E-value=21 Score=30.29 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN--FDKAYKVFKESVMVHKIPDFNTVKLLVEG 351 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (403)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...++-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 466788888889999999999888632111 12344444455555433 35577788888777765554444433333
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.58 E-value=84 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHH
Q 015673 100 LCNLIRSYGQAGMFDHAMRTFDQM 123 (403)
Q Consensus 100 ~~~l~~~~~~~~~~~~A~~~~~~~ 123 (403)
++.+++.|...+.++.|..+..+.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 455555555555555555555554
No 276
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.21 E-value=52 Score=25.36 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 288 MDEAKKVYEGLEENGCSPNAT--TFR-----TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
++.|+.+|+.+.+....++.. ... ..+..|.+.|.+++|.+++++..+. .++..-...-+....+.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcc
Confidence 456777777766442111111 111 2234677788888888888877653 334443444444444433
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.89 E-value=56 Score=24.97 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673 288 MDEAKKVYEGLEENGCSP-NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (403)
...+..+|..|..+|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 557777777777655433 34456666666777777777777777777666555
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.85 E-value=49 Score=23.96 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673 256 LKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP 305 (403)
Q Consensus 256 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (403)
..++|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555543322 2234444555555566666666666555554444
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.37 E-value=19 Score=27.11 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=4.0
Q ss_pred HHHHHHHHCC
Q 015673 293 KVYEGLEENG 302 (403)
Q Consensus 293 ~~~~~~~~~~ 302 (403)
++++.+.+.|
T Consensus 159 ~~v~~Ll~~g 168 (201)
T 3hra_A 159 DIVKLLMENG 168 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 3333344444
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.40 E-value=44 Score=22.13 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=61.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK 328 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (403)
-....++|..+-+-+...+. ...+-.+-+..+.+.|++++|..+.+.+. .||...|-.+- -.+.|-.+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHH
Confidence 55678899999888887642 22222333456778999999998776554 78888776553 567888888888
Q ss_pred HHHHHHhCCCCCCHHHH
Q 015673 329 VFKESVMVHKIPDFNTV 345 (403)
Q Consensus 329 ~~~~~~~~~~~~~~~~~ 345 (403)
-+.++-.+| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887887766 4544443
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.29 E-value=58 Score=23.85 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=32.8
Q ss_pred hcCCcchHHHHHHHhhcCCCCC--CHHHHHHHHH------HHhccCCHHHHHHHHHHHHh
Q 015673 74 KSKRFSDIETLIESHKNDPKIT--QEPYLCNLIR------SYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 125 (403)
..|++=+|.++|+.+-.....+ ...+|..||. ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477777877877776544334 3445555665 22456788888777777644
No 282
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.86 E-value=46 Score=22.11 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015673 285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV 364 (403)
Q Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (403)
....++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+... .||...|..| +-.+.|.-+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 3456778877777776542 22222233456788999999999886643 6888877554 55688988888888
Q ss_pred HHHHHHhCCchhH
Q 015673 365 IRTIKKKFPPNVL 377 (403)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (403)
+.++..+..|...
T Consensus 92 L~~la~sg~p~~q 104 (116)
T 2p58_C 92 LNRLARSQDPRIQ 104 (116)
T ss_dssp HHHHTTCCCHHHH
T ss_pred HHHHHhCCCHHHH
Confidence 8888776666654
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.96 E-value=85 Score=24.69 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=43.4
Q ss_pred cCCChHHHHHHHHHHHHC--CCCC----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673 249 YGGDPERLKELIDEMRDA--GLKP----DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN 322 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 322 (403)
...++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++. . .++.......+..+.+.|+
T Consensus 30 A~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~L~rLg~ 106 (235)
T 2d2s_A 30 ARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTENMIKLGL 106 (235)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHHHHHCCC
Confidence 677888888888766532 2221 11111222222222222233444444442 2 3455556666677777888
Q ss_pred hHHHHHHHHHHH
Q 015673 323 FDKAYKVFKESV 334 (403)
Q Consensus 323 ~~~a~~~~~~~~ 334 (403)
.++|.++|=+..
T Consensus 107 ~~~A~~lfL~~r 118 (235)
T 2d2s_A 107 PEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 888887775554
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.50 E-value=38 Score=26.20 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.1
Q ss_pred hccCCHHHHHHHHHHHHh
Q 015673 108 GQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 108 ~~~~~~~~A~~~~~~~~~ 125 (403)
+..|+.+.+..+++.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 344555444444444333
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=50.47 E-value=42 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=16.5
Q ss_pred HHHHHccCChHHHHHHHHHHHhC
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMV 336 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~ 336 (403)
+..|.+.|.+++|.++|++..+.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 44678888888888888886544
No 286
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=50.38 E-value=70 Score=26.99 Aligned_cols=59 Identities=3% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
.++......+..++...+|+++...-..-..+.+. +.++..+...+..+.-..+++.+.
T Consensus 39 R~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~g-n~vvQklle~~~~~~~~~i~~~i~ 97 (351)
T 3gvo_A 39 RFIQQKLERATPAERQIVFNEILQAAYQLMTDVFG-NYVIQKFFEFGSLDQKLALATRIR 97 (351)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTH-HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhh-hHHHHHHHhhCCHHHHHHHHHHHH
Confidence 45666667778888888888876543111112222 566777777777666666666664
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.55 E-value=59 Score=25.61 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=50.3
Q ss_pred HHHhhhhccCChHHHHHHHHHhhhcc--CCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673 30 KAKSKLRSEFDPDKALDIYSSVSKHY--ASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105 (403)
Q Consensus 30 ~l~~~l~~~~~~~~A~~~~~~~~~~~--~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (403)
.-+..+....++++|+++.++..+.- ..+.. ........+..-.....-.-+..+.+.+. . ..........+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 45778888889999998888775422 11100 01111222333333333333444444443 2 333444556667
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 015673 106 SYGQAGMFDHAMRTFDQMD 124 (403)
Q Consensus 106 ~~~~~~~~~~A~~~~~~~~ 124 (403)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7778888888888776654
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.24 E-value=23 Score=28.31 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCch---HHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChh---cHHHHHHHHHhcC
Q 015673 213 LYKQGNAEEAERLWSEMEKKGVDLDV---AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTI---SYNFLMTCYCKNE 286 (403)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 286 (403)
.+..++......+++.+.+.|..++. ...+.+..+...|+.+-+..+++. .|..++.. -.+. +....+.|
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~ 264 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELK 264 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcC
Confidence 34556655556677777777665442 223344444466776554444431 34443322 2222 33334556
Q ss_pred ChHHHHHHHHHHHHCCCCCC
Q 015673 287 MMDEAKKVYEGLEENGCSPN 306 (403)
Q Consensus 287 ~~~~A~~~~~~~~~~~~~~~ 306 (403)
+.+- .+.+.+.|..++
T Consensus 265 ~~~i----~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 265 LKKI----AELLCKRGASTD 280 (285)
T ss_dssp CHHH----HHHHHHHSSCSC
T ss_pred cHHH----HHHHHHcCCCCC
Confidence 6543 334445555544
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.50 E-value=85 Score=23.67 Aligned_cols=162 Identities=12% Similarity=-0.059 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
...+..+...+..+ +...+..+..+ ++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.
T Consensus 37 ~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 37 RAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 44556666666533 33333334322 34445555666666666643 3333333333 25666666777777777
Q ss_pred CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673 146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL 225 (403)
Q Consensus 146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (403)
++.+ +...+..+.+ .++...-...+.++...|+.+ +...+..+.+. ++..+-...+.++.+.+. ..+...
T Consensus 109 ~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 109 GDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp CCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred CcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 7643 4444444443 256666666777777777654 44445455432 466677777888888876 456666
Q ss_pred HHHHHHcCCCCchHHHHHHHhhh
Q 015673 226 WSEMEKKGVDLDVAAYNVRITNT 248 (403)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~ 248 (403)
+..+.+. ++...-...+.++
T Consensus 179 L~~~l~d---~~~~vr~~A~~aL 198 (211)
T 3ltm_A 179 MEKLAET---GTGFARKVAVNYL 198 (211)
T ss_dssp HHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHHHhC---CCHHHHHHHHHHH
Confidence 6666654 3444444444444
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.48 E-value=74 Score=22.64 Aligned_cols=37 Identities=14% Similarity=-0.076 Sum_probs=15.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
.+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333444444444444333333444333344444433
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.38 E-value=1.3e+02 Score=29.61 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKK 232 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (403)
-|.-++..+-+.+-++.+.++-+..++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4566777777777777777777766654
No 292
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=47.03 E-value=86 Score=25.88 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCCCc---hHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHH
Q 015673 224 RLWSEMEKKGVDLD---VAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDT---ISYNFLMTCYCKNEMMDEAKKVYEG 297 (403)
Q Consensus 224 ~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (403)
.+.+.+.+.|..++ ....+.+..+...|..+....++.. .|..++. .-.+.|..+ ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 34444556665443 2233344445566776655544431 2333322 222333333 4556654 3444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 015673 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF 342 (403)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (403)
+++.|..+|..+ .+...++.|+.+ +++-+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 556676666543 233445556654 34445566655543
No 293
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.71 E-value=78 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555554443334444333344444444
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.65 E-value=78 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=16.0
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 317 LCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 36 l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 36 LYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333334444444444443333333333333344444433
No 295
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.19 E-value=76 Score=22.60 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444333333333333333333333
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.18 E-value=74 Score=22.30 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554443334444333334444444
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.53 E-value=83 Score=23.39 Aligned_cols=164 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHHHHHHhhh--
Q 015673 175 LKSHCDSGSSDKALELLNEMENKGVEVTT-VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAYNVRITNT-- 248 (403)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~-- 248 (403)
+...++.|+++. +..+...+..... ..-.+.+...+..|+.+.-.++.+.+++.|..++. .-.+.+..++
T Consensus 10 l~~Aa~~g~~~~----~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 10 VSAAAMLGTYED----FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHHSCHHH----HHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcH----HHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHH--HHHHHHHHHHccC
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISY----NFLMTCYCKNEMMDEAKKVYEGLEE-NGCSPNAT--TFRTWIYHLCGSG 321 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~~~ 321 (403)
...+.....++.+.+.+.|..++.... +.|..+.........-..+++.+.+ .|..++.. .=.+-+....+.|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Q ss_pred ChHHHHHHHHHHHhCCCCCCH
Q 015673 322 NFDKAYKVFKESVMVHKIPDF 342 (403)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~ 342 (403)
..+-..-+.+...+.+++.+.
T Consensus 166 ~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp CHHHHHHHHHHHHHHTCCC--
T ss_pred CHHHHHHHHHHHHHHhcccCC
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.14 E-value=1e+02 Score=23.53 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=47.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF-----DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (403)
+..|.+.|+-++.+|++.| .|....-..++.+.-.-|.- ..|...++-....|.+--...+...+.-++.+-+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKS 104 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc
Confidence 5678888888888888888 66555555555555555542 24445555555557554444444444444444443
Q ss_pred HHHHHHHHHH
Q 015673 359 KEAKGVIRTI 368 (403)
Q Consensus 359 ~~a~~~~~~~ 368 (403)
..+...++..
T Consensus 105 Ns~y~A~~~A 114 (204)
T 2r9g_A 105 NSAYMALDAA 114 (204)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 299
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=44.84 E-value=42 Score=20.10 Aligned_cols=46 Identities=4% Similarity=0.007 Sum_probs=27.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673 310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK 356 (403)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (403)
++.++..++...-.++++..+.++.+.| ..+...|..-++.+++..
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 4455555555555666777777776666 555666655555555443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.36 E-value=31 Score=25.80 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=7.1
Q ss_pred HhcCCcchHHHHHH
Q 015673 73 AKSKRFSDIETLIE 86 (403)
Q Consensus 73 ~~~~~~~~a~~~~~ 86 (403)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555544
No 301
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.21 E-value=1.7e+02 Score=25.67 Aligned_cols=167 Identities=14% Similarity=0.091 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHhC--------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CchHHHHHHHhhhcC
Q 015673 183 SSDKALELLNEMENK--------GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-D---LDVAAYNVRITNTYG 250 (403)
Q Consensus 183 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~ 250 (403)
..++...+++..... ++..+......++.. ..|+...+..+++.+..... . ....+...+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v------ 237 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELL------ 237 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHH------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHH------
Confidence 345666777666542 233455555555554 46888888888887765422 0 011222221
Q ss_pred CChHHHHHHHHHHHHCCC---CCChhcHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 015673 251 GDPERLKELIDEMRDAGL---KPDTISYNFLMTCYC---KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN-- 322 (403)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 322 (403)
++...... ..+......++.++. +.++.+.|+.++..|.+.|..|....-..+..+.-.-|.
T Consensus 238 ----------~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~ 307 (447)
T 3pvs_A 238 ----------TEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNAD 307 (447)
T ss_dssp ----------HHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGC
T ss_pred ----------HHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCC
Confidence 12221100 001111222344433 467999999999999999877665555555556655554
Q ss_pred ---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 323 ---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 323 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (403)
..-|...++-....|.+-....+...+-.++.+-+-..+...++.
T Consensus 308 p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~ 355 (447)
T 3pvs_A 308 PRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKA 355 (447)
T ss_dssp THHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 234555566666667433333333333333444443333333333
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.08 E-value=97 Score=22.75 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc
Q 015673 116 AMRTFDQMDELGTPRS-VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD 167 (403)
Q Consensus 116 A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 167 (403)
+..+|..|...|+-.. +.-|......+-..|++.+|..+|+.-++. +..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 5556666666555433 333455555566666666666666666554 44443
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.04 E-value=1.1e+02 Score=23.34 Aligned_cols=18 Identities=11% Similarity=0.256 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 015673 216 QGNAEEAERLWSEMEKKG 233 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~ 233 (403)
..|.+.|+-++.+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555555555555555
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.50 E-value=87 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 015673 276 NFLMTCYCKNEMMDEAKKVYEGLE 299 (403)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~~~ 299 (403)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666666666666666654
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.15 E-value=1.1e+02 Score=23.21 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=28.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhCC
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN-----FDKAYKVFKESVMVH 337 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 337 (403)
+..|.+.|+-++.+|++.|-.|....-..++.+.-.-|. ...|...++-....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 456677777777777776655544444444444444332 223444444444445
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.91 E-value=29 Score=25.42 Aligned_cols=47 Identities=4% Similarity=0.046 Sum_probs=24.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCc
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDEL--GTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
.++..+...+..-.|.++++.+.+. ++..+..|...-+..+...|-+
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444555555566666666554 4444555544445555555544
No 307
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.84 E-value=28 Score=20.39 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 015673 185 DKALELLNEMENKGVEVTTVTYTTVLNCL 213 (403)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 213 (403)
++|.+.|.+|++..-.++..+|.-.++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443333446666666665
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=40.37 E-value=1.2e+02 Score=23.05 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=18.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673 215 KQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (403)
+..|.+.|+-.+.+|++.|-.|.-..-..++
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3466777777777777766555544444433
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.98 E-value=1.1e+02 Score=22.69 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=46.1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------------CCH-HHHH
Q 015673 249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS----------------PNA-TTFR 311 (403)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~-~~~~ 311 (403)
..|.+.++.-++..+. ..+..-|.. -+|-+..++..|...++.+++..+. .|. ..|+
T Consensus 45 yngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 6677776665554221 111122222 2455677777777777777643322 222 3566
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 015673 312 TWIYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~ 332 (403)
.+...|...|+.++|+..+..
T Consensus 119 l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhh
Confidence 667778888999999887754
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.85 E-value=1.7e+02 Score=24.55 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 015673 172 GLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555555555555555555554
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.62 E-value=26 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=9.4
Q ss_pred HHHHHhcCCcchHHHHHHH
Q 015673 69 VRRLAKSKRFSDIETLIES 87 (403)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~ 87 (403)
+...+..|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3444555665554444443
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.17 E-value=1.2e+02 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=11.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHH
Q 015673 241 YNVRITNTYGGDPERLKELIDE 262 (403)
Q Consensus 241 ~~~ll~~~~~~~~~~a~~~~~~ 262 (403)
.+.+..+...|+.+-+.-+++.
T Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 162 LSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHcChHHHHHHHHHc
Confidence 3444444466666655555544
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.84 E-value=81 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
|..+.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555555555566666655555555555444
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.41 E-value=95 Score=26.05 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 015673 135 FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS--SDKALELLNEMENKGVEVTTVTYTTVLNC 212 (403)
Q Consensus 135 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 212 (403)
...++.-|...|+.++|...++++... .. .......++......++ .+.+.+++..+.+.|+-+. ..+..+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~----~~~~~G 86 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP-SL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST----AQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-GG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH----HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc-cc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHH
Confidence 467788899999999999999998421 11 11112222222232222 3455666777766554322 222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHH-hhh-cCCChHH---HHHHHHHHHHCCCCCChhcHHHHHHHHHhcC
Q 015673 213 LYKQGNAEEAERLWSEMEKKGV-DLDVAAYNVRI-TNT-YGGDPER---LKELIDEMRDAGLKPDTISYNFLMTCYCKNE 286 (403)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll-~~~-~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (403)
+ .++++.+.+..+ .|....+-..+ ..+ ..|-... ...+.+.+...|. .......++..+.+..
T Consensus 87 f---------~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~ 155 (339)
T 1ug3_A 87 L---------YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSM 155 (339)
T ss_dssp H---------HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHH
T ss_pred H---------HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHc
Confidence 2 222333332221 23433333322 222 3333221 1122333333331 2334455566666666
Q ss_pred ChHHHHHHHHH
Q 015673 287 MMDEAKKVYEG 297 (403)
Q Consensus 287 ~~~~A~~~~~~ 297 (403)
..+.+..+|..
T Consensus 156 g~~~l~~~~~~ 166 (339)
T 1ug3_A 156 GPKKVGTLWRE 166 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67777777764
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.47 E-value=1e+02 Score=21.42 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCC
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN--FDKAYKVFKESVMVHKI 339 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 339 (403)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3446666666777777777777664211 0112223333334444321 24455555555555533
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.46 E-value=1e+02 Score=22.41 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=43.7
Q ss_pred hHHHHHHHHHh-hhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC--CCCCCHHHHHHHHHHHhccCCH
Q 015673 41 PDKALDIYSSV-SKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPYLCNLIRSYGQAGMF 113 (403)
Q Consensus 41 ~~~A~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 113 (403)
.+.+++-++.. .+.|.+. + ..-..++..+...+..-.|.++++.+... +...+..+...-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~--T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY--T-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC--C-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCC--C-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45566655554 4455444 2 22346778888888888999999999765 4444554444455666666643
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.16 E-value=74 Score=19.69 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 298 LEENGCSPNATTFRTWIYHLCGSG-NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 298 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555444332 3334444433 344455555555554434455555555555555543
No 318
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.96 E-value=1.4e+02 Score=22.92 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=19.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
+..|.+.|+-++.+|++.|-.|....-..++.+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566666666666666664444444444444443333
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.87 E-value=47 Score=25.54 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=20.6
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 015673 72 LAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF 120 (403)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 120 (403)
.+..|+++....+++.-.. ....+.. -...+...+..|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll~~g~~-~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYD-VRQPDKE-NVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCC-cCCCCCC-CCCHHHHHHHhCCHHHHHHHH
Confidence 4566776666555553221 1111111 112344455666665444333
No 320
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.85 E-value=1.2e+02 Score=22.00 Aligned_cols=101 Identities=10% Similarity=-0.006 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
..+....++..+.+.|.-.|...-...+....+.| .....+-.++.+.|+.++ +....+..+. ....+.|..+++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~-~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREAD-IDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcC-HhHHHHHHHHHH
Confidence 34455666777777776655555555555555433 234566667777776432 2222222221 123344555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 332 ESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
+-.....+++.....-++..+.+.|-
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 43322223344444555555555553
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.14 E-value=1e+02 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHhh
Q 015673 67 LTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 44555555555555555555553
No 322
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.99 E-value=1.7e+02 Score=23.45 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHH
Q 015673 324 DKAYKVFKESVM---VHKIPDFNTVKLL-----VEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 324 ~~a~~~~~~~~~---~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~ 368 (403)
+.+.+.|+.+.+ ..++|+..+.-.| +-.|--.+++++|..+-++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~A 225 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555433 2456654433222 22344578998888776555
No 323
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=35.63 E-value=1.1e+02 Score=27.67 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=33.9
Q ss_pred chHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673 79 SDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP 152 (403)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 152 (403)
+......+.+..+-...+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ .-+..|.+.|+++.+.
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344455555555445555566677889999999999999999988665443 44455 5556788888887653
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.32 E-value=1.5e+02 Score=22.59 Aligned_cols=15 Identities=0% Similarity=-0.135 Sum_probs=7.2
Q ss_pred HhcCChHHHHHHHHH
Q 015673 283 CKNEMMDEAKKVYEG 297 (403)
Q Consensus 283 ~~~~~~~~A~~~~~~ 297 (403)
++.|+.+-+..+++.
T Consensus 205 ~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555554444444
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.00 E-value=72 Score=22.73 Aligned_cols=45 Identities=4% Similarity=0.001 Sum_probs=24.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 334343444 456666666666665555555555555566555544
No 326
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.69 E-value=1.2e+02 Score=27.56 Aligned_cols=77 Identities=8% Similarity=0.035 Sum_probs=39.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673 109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188 (403)
Q Consensus 109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (403)
...+.+......+.+..+=+--+..-..-++..|.+.|-.+.|.++++.+-.+ ..-+...+ .-+..|.+.|+++.+.
T Consensus 493 ~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k--~l~~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 493 ATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ--MLSAHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------------------
T ss_pred CccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--HHHCccHH-HHHHHHHHcCChhhcc
Confidence 34556667777777766544446677888899999999999999999988553 22344455 6667888999887653
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.62 E-value=1.6e+02 Score=22.60 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (403)
..|.+.|+-++.+|++.|-.|.-..-..++
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi 77 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLI 77 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555665555665555444443333333
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.33 E-value=1.4e+02 Score=21.63 Aligned_cols=47 Identities=9% Similarity=-0.084 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673 325 KAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK 371 (403)
Q Consensus 325 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 371 (403)
++.++|..|...++- -....|......+...|++++|.++++.-.++
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 366666666666543 33455666666777777777777777776654
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.65 E-value=2.3e+02 Score=24.05 Aligned_cols=176 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY 282 (403)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (403)
....++.-|...|+.++|.+.++++.....-.....+..+..++ .....+.+..++..+...++-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-------------------CCCC
Q 015673 283 CKNEMMDE----AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-------------------VHKI 339 (403)
Q Consensus 283 ~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~ 339 (403)
....|..- |..++..+...-+.-+......+...+...+...-...+++.+.+ .-+|
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~l~~FlP 173 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLP 173 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCCSGGGSC
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCHHHhCC
Q ss_pred CCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCchhHHHH
Q 015673 340 PDFNTVKLLVEGLVKKKK------IKEAKGVIRTIKKKFPPNVLRAW 380 (403)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~ 380 (403)
++..+-..+...+...|- .+--.++.+.+.+.-+++.+..|
T Consensus 174 e~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~w 220 (364)
T 3l6a_A 174 EIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKW 220 (364)
T ss_dssp GGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHH
No 330
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.31 E-value=62 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDE 125 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~ 125 (403)
.+..|.+.|.+++|.++|++...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 44556677777777777777543
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.95 E-value=1.4e+02 Score=21.33 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=30.5
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCC-ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGG-DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM 288 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (403)
+.+.|..++..-..+ +..+ ..+ ..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 8 l~~~g~r~T~qR~~I-l~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRLKI-LEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHHHH-HHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445555555443332 2233 333 4556677777776665444555544455555555543
No 332
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.88 E-value=1.3e+02 Score=22.84 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=30.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 314 IYHLCGSGNFDKAYKVFKESVMVHKIP---------DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+...+..|+.+-+..+++.+.+.|..+ +..-.+ -+...++.|+.+-+.-+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 444556677776666666666665322 111112 24445567777666666655543
No 333
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.79 E-value=1.3e+02 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhh
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHK 89 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~ 89 (403)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555566666666666554
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.39 E-value=57 Score=26.31 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=94.4
Q ss_pred HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHh
Q 015673 139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT---VTYTTVLNCLYK 215 (403)
Q Consensus 139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 215 (403)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+..++ +.|..++. .-++. +...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHH
Confidence 3344556776555544443 33333322233445556677766554444 44544432 22233 334456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCch---HH-HHHHHhhhcCCChHHHHHHHHHHHHCCCCCChh-cHHHHHHHHHhcCChHH
Q 015673 216 QGNAEEAERLWSEMEKKGVDLDV---AA-YNVRITNTYGGDPERLKELIDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDE 290 (403)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~---~~-~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 290 (403)
.|+.+-+..+++. |..++. .. .+.+..+...|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655444443 433332 12 23344444666654 444444444333221 33344555567778776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI 368 (403)
Q Consensus 291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (403)
+..+++.-..... .+..-.+..+...+..|+. ++++.+++.|..++.... .-...|+.+-+.-+++.-
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence 6666655443221 1211222223334445554 344555666766554431 113466665555555544
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.23 E-value=68 Score=22.63 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=28.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555666667777766666555666666666666666644
No 336
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.19 E-value=69 Score=20.94 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=14.8
Q ss_pred CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673 77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD 114 (403)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (403)
+.+.|.+++..+...|. ..|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHH
Confidence 34555555555543322 12444444444444433
No 337
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.98 E-value=90 Score=23.95 Aligned_cols=24 Identities=0% Similarity=-0.254 Sum_probs=13.3
Q ss_pred HhhhhccCChHHHHHHHHHhhhcc
Q 015673 32 KSKLRSEFDPDKALDIYSSVSKHY 55 (403)
Q Consensus 32 ~~~l~~~~~~~~A~~~~~~~~~~~ 55 (403)
+...+..|+.+-...+++...+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334455567666666666544443
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.49 E-value=1.1e+02 Score=21.21 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=20.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334344444555555555555443444444434444444444
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.38 E-value=1.5e+02 Score=20.73 Aligned_cols=58 Identities=9% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHcCCCCchHHHHHHHhhh-cCC-ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673 229 MEKKGVDLDVAAYNVRITNT-YGG-DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM 287 (403)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (403)
+.+.|..++..-..+ +..+ ..+ ..-.|.++++.+.+.+...+..|..--+..+.+.|-
T Consensus 9 l~~~g~r~T~qR~~I-l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKI-LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHHHH-HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455544433322 2223 333 455566666666665444444444444444444443
No 340
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=29.29 E-value=58 Score=20.27 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673 153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194 (403)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (403)
.++.++. +++|+..||+-+...+-+.--..+++.+.+++
T Consensus 24 ~LL~kIP---nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIP---NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSS---SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCC---CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4455554 67778888887777665555555666665554
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.18 E-value=99 Score=21.77 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=20.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673 278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG 321 (403)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 321 (403)
++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444455555555555443444444433444444444
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.91 E-value=66 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY 148 (403)
Q Consensus 103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 148 (403)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444455566666666666665555666655556666665544
No 343
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.29 E-value=1e+02 Score=21.26 Aligned_cols=52 Identities=10% Similarity=-0.094 Sum_probs=31.7
Q ss_pred hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHH
Q 015673 27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIET 83 (403)
Q Consensus 27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (403)
.|...+...+..++.+-|.++++...+.+ ....|...+..|-..=+.+-+.+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHH
Confidence 46666777777777777777777777666 34455555555555555554443
No 344
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.77 E-value=1.3e+02 Score=19.73 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHH
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG-----LEENGCSPNATTFRTW 313 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~l 313 (403)
.+.++.+++...|+.|+..+...++..|...+. + +..+.++ ....|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355667777777888887777777777776553 2 3332222 1244666766665543
No 345
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.58 E-value=1.9e+02 Score=21.44 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331 (403)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (403)
..+....++..+.+.|.-.|.......+....+.|.+. ...+-.++.+.|+.++ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 34556677888888887766666666666666555443 3566777778886432 22222221111122345555555
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 015673 332 ESVMV-HKIPDFNTVKLLVEGLVKKKK-IKEAKGVIRTIK 369 (403)
Q Consensus 332 ~~~~~-~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 369 (403)
+-... .-.++.....-++..+.+.|- ++.+..+++.+.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 53322 112233445556666777774 555566666654
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.91 E-value=96 Score=25.97 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
...+...+..|+.+-+..+++. ...+......-.+.+...+..|+. ++++.+.+. |..++...-...+...+.
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~-g~~~~~~~g~t~L~~A~~ 93 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASV-GEVHSLWHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHH-CCCCCCBTTBCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHC-CCCccccCCCCHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhCCCCCch--------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTT--------------------VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (403)
.|+.+-+..+++.....|..++. .-.+.|..++.......+..+++-+.-..--..+...
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g 173 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHH-----CCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 015673 241 YNVRITNTYGGDPERLKELIDEMRD-----AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT--TFRTW 313 (403)
Q Consensus 241 ~~~ll~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l 313 (403)
.+.+..++..|+.+-+..+++.-.. .+.. +..-.+.|..+..... .++++.+++.|..++.. .-.+-
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~tp 247 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTVP 247 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCH
Q ss_pred HHHHHccCChHHHHHHHHH
Q 015673 314 IYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~ 332 (403)
+...+..|+.+-+.-+++.
T Consensus 248 L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 248 LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHc
No 347
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=26.87 E-value=1.3e+02 Score=19.32 Aligned_cols=30 Identities=17% Similarity=0.074 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673 323 FDKAYKVFKESVMVHKIPDFNTVKLLVEGLV 353 (403)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (403)
++.|+.+++++...- ..++..|...+..+.
T Consensus 10 ~~~A~~YvnkVK~rF-~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNRF-QGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 456666676665543 335666666555544
No 348
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.86 E-value=2.1e+02 Score=21.38 Aligned_cols=169 Identities=12% Similarity=-0.043 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673 96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL 175 (403)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 175 (403)
+...-...+..+.+.+..+ +...+..+... ++...-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHH
Confidence 3444444555555555533 33333333331 45555555566666666533 3333333333 24555556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673 176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE 254 (403)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 254 (403)
.++.+.++.+ +...+..+.. .++...-...+.++...|+.+ +...+..+.+ .++...-...+.++ ..++ .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 6666666643 3333333433 245566666667777766643 3444444443 24444444445555 4444 4
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673 255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKN 285 (403)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (403)
.+...+..+... ++..+-...+.++.+.
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 455555555442 2444444444444433
No 349
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.80 E-value=5.6e+02 Score=26.42 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673 288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367 (403)
Q Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (403)
.+...+.|.++.+---.-|.......+......+++-.|++++.++++.. |+...|..++..+...|.. ....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w~-h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGHE-HIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCH-HHHHHHHh
Confidence 33445555555543111233333233334446899999999999998764 7888888888888777754 44444444
Q ss_pred H-HHhCCch
Q 015673 368 I-KKKFPPN 375 (403)
Q Consensus 368 ~-~~~~~~~ 375 (403)
+ .-++|+.
T Consensus 1342 ~~~~~~p~~ 1350 (1354)
T 3lxu_X 1342 MMITAFPSS 1350 (1354)
T ss_dssp HHHHHSCSS
T ss_pred hhhhhCccc
Confidence 4 3346554
No 350
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.41 E-value=2.5e+02 Score=22.17 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
++..+-...+.++...|+.. +...+..+.+. ++ .-...+.++.+.|.. ++...+.++.+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 34555555555555555433 33333333322 12 112334455555553 45555555544
No 351
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.33 E-value=80 Score=23.43 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673 306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357 (403)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (403)
....++.++..++...-+++++.++.++...| ..+..+|..-++.+++..-
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF 160 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQF 160 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 33455666666666666666777777766666 4556666555555555443
No 352
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.09 E-value=1.1e+02 Score=21.80 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.0
Q ss_pred hcCChHHHHHHH
Q 015673 180 DSGSSDKALELL 191 (403)
Q Consensus 180 ~~~~~~~a~~~~ 191 (403)
+.|+.+....++
T Consensus 17 ~~g~~~~v~~ll 28 (165)
T 3twr_A 17 KAGDVETVKKLC 28 (165)
T ss_dssp HHTCHHHHHHHC
T ss_pred HhCCHHHHHHHH
Confidence 344444443333
No 353
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.04 E-value=85 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 015673 349 VEGLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~ 370 (403)
+...++.|+.+-+..++++-..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 4455678888877777777654
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.88 E-value=2e+02 Score=20.95 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 015673 320 SGNFDKAYKVFKESVMVHKIP--DFNTVKLLVE------GLVKKKKIKEAKGVIRTIKK 370 (403)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 370 (403)
.|++=+|-++++..=...-.+ ....|..||+ ...+.|+..-|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666665544332223 3344444444 12335677777777666654
No 355
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.61 E-value=2.1e+02 Score=21.08 Aligned_cols=117 Identities=10% Similarity=-0.052 Sum_probs=56.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180 (403)
Q Consensus 101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (403)
...+.++...+..+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.+
T Consensus 63 ~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 63 RAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGE 133 (201)
T ss_dssp HHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence 334444555554432 233333332 145555555566666666543 3333333332 2455555555566666
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK 231 (403)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (403)
.++.+ +...+..+... ++..+-...+.++...|+. ++...+..+.+
T Consensus 134 ~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 134 IGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred hCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 55543 33444444332 3555666666666666653 45555555554
No 356
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.51 E-value=2.9e+02 Score=22.56 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCCCChhcH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHH
Q 015673 258 ELIDEMRDAGLKPDTISY--NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYHLCGSGNFDKAYKVFKE 332 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 332 (403)
.+.+.+.+.|..++.... .+.+...+..|..+.+..++.. .|..++. .-.+. +...+..|+.+- .+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~Tp-L~~A~~~g~~~i----v~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKKI----AEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBH-HHHHHHTTCHHH----HHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCH-HHHHHHcCCHHH----HHH
Confidence 444555677766553321 1234445567777665554432 2222221 11122 233445566543 344
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673 333 SVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362 (403)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (403)
+++.|-.++..+ .+...++.|+.+-+.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~iv~ 318 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHSLVK 318 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHHHHH
Confidence 456676555433 334445667765333
No 357
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.43 E-value=1.3e+02 Score=23.44 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 015673 349 VEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+...+..|..+-+.-+++.-.
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCC
Confidence 444566788777766666554
No 358
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.87 E-value=48 Score=24.38 Aligned_cols=24 Identities=13% Similarity=0.437 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 015673 172 GLLLKSHCDSGSSDKALELLNEME 195 (403)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~ 195 (403)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666665553
No 359
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.69 E-value=3.9e+02 Score=23.72 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673 99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160 (403)
Q Consensus 99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 160 (403)
.|..-...+...|++++|.++--.... |+-.+..|.+.+-..=..-|...-.+.+|..+.+
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~ 423 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLD 423 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhc
Confidence 333334444455555555555444333 2223444443333322233333334444444443
No 360
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.60 E-value=2.2e+02 Score=20.86 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 015673 187 ALELLNEMENKGVEVT-TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237 (403)
Q Consensus 187 a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (403)
+..+|..|...|+-.. ...|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455666655544322 23444555555566666666666666665554443
No 361
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.41 E-value=2e+02 Score=20.31 Aligned_cols=15 Identities=7% Similarity=0.065 Sum_probs=6.7
Q ss_pred cCCcCcHHHHHHHch
Q 015673 145 SRLYDKVPILFDEIP 159 (403)
Q Consensus 145 ~~~~~~a~~~~~~~~ 159 (403)
.+..-.|.++++.+.
T Consensus 34 ~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 34 SMAHPTADDIYKALE 48 (145)
T ss_dssp CSSCCCHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHH
Confidence 333444444444443
No 362
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.06 E-value=4e+02 Score=23.64 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHH
Q 015673 110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALE 189 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (403)
..+.+-|.++-. +.|++--...|..-.+.+...|++++|.++--...+ |+--+..|.+.+-..=...|+..--+.
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 466676655543 335544455566667778888999998888877755 666677777666665555667777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673 190 LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW 226 (403)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (403)
+|..+.+.|. .+..---.+++.-...|+.+-..+++
T Consensus 417 YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 417 YFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHH
Confidence 7777777653 34333333444445555555444444
No 363
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.68 E-value=2.7e+02 Score=21.53 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673 253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304 (403)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (403)
.+.+..++..+.+.|.-.|.......+....+.+.+ ....+-.++.+.|+.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 345556677777777665555555555555442222 345566667777764
No 364
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.93 E-value=2.5e+02 Score=20.80 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=5.1
Q ss_pred HHHHHHHhCCCC
Q 015673 118 RTFDQMDELGTP 129 (403)
Q Consensus 118 ~~~~~~~~~~~~ 129 (403)
.+++.+.+.|.-
T Consensus 54 ~vl~~L~~~g~l 65 (177)
T 3e3v_A 54 EIINKLIDLDLI 65 (177)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCC
Confidence 344444444443
No 365
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.77 E-value=3.4e+02 Score=22.35 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHH
Q 015673 275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN--FDKAYKVFKESVMVHKIPDFNT 344 (403)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 344 (403)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+.+.++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456778888889999999999887621111 12333444444544433 3456677777776665544443
No 366
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.63 E-value=1.1e+02 Score=23.88 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=10.3
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 015673 179 CDSGSSDKALELLNEMENKGV 199 (403)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~ 199 (403)
++.|+.+....+++.+.+.|.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHhcCC
Confidence 344555555555554444443
No 367
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.34 E-value=4.9e+02 Score=24.06 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673 66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS 145 (403)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 145 (403)
...+..+.+.+++......+.. .+.+...-+....+....|+..+|......+-..|. .....+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHC
Confidence 3345556666665544432221 234444445566666677776666665555544432 2444555555555554
Q ss_pred CCc
Q 015673 146 RLY 148 (403)
Q Consensus 146 ~~~ 148 (403)
|..
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 443
No 368
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.03 E-value=1.8e+02 Score=18.88 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHH
Q 015673 309 TFRTWIYHLCGSGNFDKAYKVFKES 333 (403)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~ 333 (403)
.+.-....+.+.|++++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445566778888888887765553
No 369
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.01 E-value=2.3e+02 Score=20.15 Aligned_cols=44 Identities=14% Similarity=-0.049 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc
Q 015673 137 ALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181 (403)
Q Consensus 137 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (403)
.++..+...+..-.|.++++.+.+. +...+..|..-.+..+...
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHC
Confidence 3334444444445555555555443 3233333333333333333
No 370
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.98 E-value=1.1e+02 Score=17.86 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 015673 110 AGMFDHAMRTFDQMDE 125 (403)
Q Consensus 110 ~~~~~~A~~~~~~~~~ 125 (403)
.|+.+.|+..+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 3445555555444443
No 371
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.38 E-value=1.7e+02 Score=18.28 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 015673 348 LVEGLVKKKKIKEAKGVIRTIK 369 (403)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~ 369 (403)
+.+-|+..|+++.|..+|+...
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 4455555666666665555543
Done!