Query 015676
Match_columns 403
No_of_seqs 236 out of 1225
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 4.5E-59 9.8E-64 449.7 35.5 317 24-351 2-326 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 2.1E-44 4.5E-49 341.9 25.3 228 109-338 9-244 (244)
3 TIGR00803 nst UDP-galactose tr 99.9 4.7E-26 1E-30 213.4 16.2 219 120-345 2-222 (222)
4 PF08449 UAA: UAA transporter 99.9 2.1E-23 4.5E-28 204.5 28.9 291 45-353 6-303 (303)
5 PF06027 DUF914: Eukaryotic pr 99.9 4.8E-22 1E-26 195.8 30.5 232 115-354 77-312 (334)
6 KOG1581 UDP-galactose transpor 99.9 4.5E-21 9.7E-26 181.7 24.6 305 28-351 3-317 (327)
7 PLN00411 nodulin MtN21 family 99.9 1.8E-19 3.9E-24 180.3 34.2 277 51-347 25-328 (358)
8 PTZ00343 triose or hexose phos 99.9 8.4E-19 1.8E-23 175.4 33.2 299 21-348 35-349 (350)
9 KOG3912 Predicted integral mem 99.8 3.8E-19 8.3E-24 166.5 23.6 289 56-349 20-336 (372)
10 TIGR00817 tpt Tpt phosphate/ph 99.8 1.5E-18 3.3E-23 169.7 29.2 219 118-349 66-295 (302)
11 PRK15430 putative chlorampheni 99.8 3.5E-18 7.6E-23 167.0 31.1 277 34-345 3-283 (296)
12 PRK11272 putative DMT superfam 99.8 2E-17 4.3E-22 161.4 34.0 276 34-347 3-285 (292)
13 PRK11453 O-acetylserine/cystei 99.8 1.9E-17 4.2E-22 162.0 32.7 274 43-350 8-290 (299)
14 KOG1580 UDP-galactose transpor 99.8 2E-19 4.3E-24 164.6 15.6 284 42-347 16-313 (337)
15 TIGR00950 2A78 Carboxylate/Ami 99.8 1.5E-16 3.2E-21 151.6 28.3 205 120-342 49-259 (260)
16 PRK10532 threonine and homoser 99.7 4.9E-15 1.1E-19 144.6 32.3 264 41-348 14-282 (293)
17 PRK11689 aromatic amino acid e 99.7 1.6E-15 3.6E-20 148.1 29.0 270 43-347 8-287 (295)
18 TIGR03340 phn_DUF6 phosphonate 99.7 2.8E-15 6E-20 145.4 26.3 208 121-344 67-280 (281)
19 COG0697 RhaT Permeases of the 99.7 3.5E-13 7.5E-18 129.2 32.8 210 119-348 72-288 (292)
20 TIGR00688 rarD rarD protein. T 99.6 1.9E-12 4.1E-17 123.7 27.6 247 40-322 3-255 (256)
21 KOG1583 UDP-N-acetylglucosamin 99.5 2E-14 4.4E-19 134.8 7.5 231 119-354 66-321 (330)
22 KOG1443 Predicted integral mem 99.5 1.2E-11 2.7E-16 117.8 21.7 263 64-347 39-315 (349)
23 KOG1582 UDP-galactose transpor 99.4 3.6E-12 7.9E-17 119.4 15.8 221 119-349 108-334 (367)
24 KOG1441 Glucose-6-phosphate/ph 99.4 6.3E-13 1.4E-17 130.0 11.0 224 119-354 85-314 (316)
25 KOG4510 Permease of the drug/m 99.4 7.2E-13 1.6E-17 124.0 7.2 207 128-345 108-323 (346)
26 KOG1444 Nucleotide-sugar trans 99.3 3.1E-10 6.7E-15 109.4 22.7 225 116-354 76-307 (314)
27 COG2962 RarD Predicted permeas 99.3 6.6E-09 1.4E-13 99.2 29.8 272 41-348 9-284 (293)
28 TIGR00776 RhaT RhaT L-rhamnose 99.3 3.8E-09 8.2E-14 103.2 26.7 208 121-345 63-286 (290)
29 KOG2765 Predicted membrane pro 99.2 5.1E-10 1.1E-14 109.5 18.8 224 120-350 162-393 (416)
30 KOG1442 GDP-fucose transporter 99.1 2.9E-11 6.4E-16 113.6 3.9 262 71-350 61-330 (347)
31 KOG2766 Predicted membrane pro 99.0 3.1E-11 6.7E-16 112.4 -0.8 212 119-346 80-298 (336)
32 PF03151 TPT: Triose-phosphate 98.9 3.1E-08 6.8E-13 86.7 15.2 138 207-347 1-153 (153)
33 COG5070 VRG4 Nucleotide-sugar 98.8 1.2E-07 2.7E-12 87.0 14.5 233 115-354 66-303 (309)
34 COG2510 Predicted membrane pro 98.8 5.1E-08 1.1E-12 82.2 10.5 130 46-189 10-139 (140)
35 PF13536 EmrE: Multidrug resis 98.7 8.7E-07 1.9E-11 74.2 14.4 70 122-192 39-109 (113)
36 PF00892 EamA: EamA-like trans 98.7 2.4E-07 5.2E-12 77.4 11.0 108 69-188 17-125 (126)
37 KOG4314 Predicted carbohydrate 98.5 3E-06 6.6E-11 76.7 12.8 212 124-349 60-278 (290)
38 COG5006 rhtA Threonine/homoser 98.5 0.00017 3.7E-09 67.9 24.7 203 120-346 74-281 (292)
39 PF03151 TPT: Triose-phosphate 98.4 1E-05 2.2E-10 70.7 14.8 146 42-187 3-151 (153)
40 PF06800 Sugar_transport: Suga 98.3 0.00011 2.3E-09 70.7 19.5 209 118-343 46-267 (269)
41 PF00892 EamA: EamA-like trans 98.1 3.5E-05 7.5E-10 64.2 11.4 119 217-346 2-125 (126)
42 PRK15051 4-amino-4-deoxy-L-ara 98.1 2.9E-05 6.4E-10 65.0 10.7 65 124-188 44-108 (111)
43 PF05653 Mg_trans_NIPA: Magnes 98.1 0.00018 3.9E-09 70.7 17.5 66 125-190 58-123 (300)
44 PTZ00343 triose or hexose phos 98.1 7.7E-05 1.7E-09 74.9 14.3 148 39-188 194-347 (350)
45 TIGR00950 2A78 Carboxylate/Ami 98.1 0.00018 3.8E-09 68.4 15.9 130 40-184 129-259 (260)
46 TIGR00817 tpt Tpt phosphate/ph 98.0 9.1E-05 2E-09 72.5 13.9 144 39-191 145-295 (302)
47 PLN00411 nodulin MtN21 family 97.9 0.00041 8.9E-09 69.9 16.4 63 129-191 268-330 (358)
48 COG2510 Predicted membrane pro 97.9 0.00017 3.7E-09 61.2 11.0 127 208-345 5-137 (140)
49 PRK11689 aromatic amino acid e 97.8 0.00092 2E-08 65.3 16.1 67 124-190 222-288 (295)
50 PF08449 UAA: UAA transporter 97.8 0.001 2.3E-08 65.2 15.9 141 40-190 155-298 (303)
51 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.0023 4.9E-08 55.1 15.8 122 207-351 3-126 (129)
52 PRK10532 threonine and homoser 97.7 0.0023 5E-08 62.4 17.2 64 127-190 219-282 (293)
53 PRK11272 putative DMT superfam 97.6 0.0023 5E-08 62.4 16.1 64 127-190 223-286 (292)
54 TIGR03340 phn_DUF6 phosphonate 97.6 0.0024 5.2E-08 61.8 15.0 129 208-347 3-135 (281)
55 PRK11453 O-acetylserine/cystei 97.5 0.0048 1E-07 60.3 16.9 64 128-191 226-289 (299)
56 PRK10452 multidrug efflux syst 97.5 0.00089 1.9E-08 56.8 9.9 72 120-191 33-105 (120)
57 PRK02971 4-amino-4-deoxy-L-ara 97.5 0.00083 1.8E-08 57.8 9.5 68 124-191 55-124 (129)
58 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.0022 4.8E-08 62.7 13.4 71 119-189 213-288 (290)
59 PRK11431 multidrug efflux syst 97.4 0.0014 3E-08 54.3 10.0 70 120-189 32-102 (105)
60 COG2076 EmrE Membrane transpor 97.4 0.0015 3.3E-08 53.9 9.7 71 119-189 32-103 (106)
61 PRK09541 emrE multidrug efflux 97.4 0.0016 3.4E-08 54.5 9.9 70 121-190 34-104 (110)
62 PRK10650 multidrug efflux syst 97.3 0.002 4.4E-08 53.7 9.8 69 120-188 38-107 (109)
63 PRK15430 putative chlorampheni 97.1 0.017 3.6E-07 56.5 15.2 134 206-346 8-144 (296)
64 TIGR00688 rarD rarD protein. T 97.1 0.029 6.2E-07 53.4 16.0 132 207-345 3-140 (256)
65 PRK15051 4-amino-4-deoxy-L-ara 97.0 0.0073 1.6E-07 50.5 9.6 60 286-345 48-107 (111)
66 PF06800 Sugar_transport: Suga 97.0 0.015 3.2E-07 56.1 12.8 115 43-178 142-256 (269)
67 PRK10452 multidrug efflux syst 96.9 0.012 2.6E-07 50.0 10.8 63 286-348 41-104 (120)
68 PRK09541 emrE multidrug efflux 96.8 0.018 3.9E-07 48.2 10.7 59 289-347 44-103 (110)
69 PF10639 UPF0546: Uncharacteri 96.6 0.005 1.1E-07 51.6 6.0 71 117-187 41-112 (113)
70 PF13536 EmrE: Multidrug resis 96.6 0.034 7.3E-07 46.3 11.1 60 287-347 47-106 (113)
71 COG5006 rhtA Threonine/homoser 96.6 0.0068 1.5E-07 57.3 7.3 57 129-185 222-278 (292)
72 KOG1441 Glucose-6-phosphate/ph 96.6 0.0045 9.8E-08 61.1 6.4 71 118-188 236-306 (316)
73 COG0697 RhaT Permeases of the 96.5 0.16 3.4E-06 48.3 16.6 71 120-190 217-288 (292)
74 KOG2922 Uncharacterized conser 96.5 0.013 2.9E-07 57.2 8.7 67 125-191 72-138 (335)
75 PF00893 Multi_Drug_Res: Small 96.5 0.012 2.7E-07 47.5 7.2 59 122-180 34-93 (93)
76 PRK10650 multidrug efflux syst 96.2 0.23 5E-06 41.4 13.7 60 286-345 46-106 (109)
77 PF05653 Mg_trans_NIPA: Magnes 96.0 0.068 1.5E-06 52.6 11.4 116 204-345 5-120 (300)
78 COG2076 EmrE Membrane transpor 95.9 0.085 1.9E-06 43.6 9.6 59 289-347 44-103 (106)
79 PRK11431 multidrug efflux syst 95.9 0.084 1.8E-06 43.7 9.6 61 286-346 40-101 (105)
80 PF07857 DUF1632: CEO family ( 95.8 0.12 2.5E-06 49.7 11.5 67 286-352 66-139 (254)
81 PF06027 DUF914: Eukaryotic pr 95.5 0.21 4.5E-06 49.9 12.6 139 36-192 165-308 (334)
82 PRK13499 rhamnose-proton sympo 95.4 3.3 7.1E-05 41.6 30.1 104 119-222 75-190 (345)
83 TIGR00803 nst UDP-galactose tr 95.1 0.026 5.7E-07 52.6 4.6 67 119-185 154-220 (222)
84 KOG1581 UDP-galactose transpor 95.0 0.29 6.2E-06 47.8 11.2 138 35-186 172-310 (327)
85 COG2962 RarD Predicted permeas 94.9 1.2 2.6E-05 43.3 14.9 127 46-190 155-284 (293)
86 PF04142 Nuc_sug_transp: Nucle 94.7 0.26 5.6E-06 47.0 10.1 68 285-352 27-94 (244)
87 PF00893 Multi_Drug_Res: Small 94.4 0.19 4.1E-06 40.5 7.2 49 290-338 44-93 (93)
88 PF04657 DUF606: Protein of un 94.0 3.8 8.3E-05 35.5 15.3 130 209-344 4-138 (138)
89 PF10639 UPF0546: Uncharacteri 93.8 0.17 3.6E-06 42.5 5.8 65 280-344 46-111 (113)
90 PRK13499 rhamnose-proton sympo 93.7 1.3 2.7E-05 44.5 13.0 136 205-347 6-153 (345)
91 KOG1580 UDP-galactose transpor 93.0 0.19 4.1E-06 47.3 5.4 70 118-187 242-311 (337)
92 COG4975 GlcU Putative glucose 92.3 0.031 6.8E-07 52.8 -0.7 130 42-192 5-139 (288)
93 COG3238 Uncharacterized protei 86.7 22 0.00047 31.4 15.2 133 207-347 6-146 (150)
94 KOG2922 Uncharacterized conser 84.5 0.51 1.1E-05 46.4 1.6 69 276-344 65-133 (335)
95 KOG4510 Permease of the drug/m 82.5 1.2 2.6E-05 42.8 3.2 49 299-350 124-172 (346)
96 KOG1583 UDP-N-acetylglucosamin 80.1 8.8 0.00019 37.3 8.0 149 24-188 149-313 (330)
97 KOG4831 Unnamed protein [Funct 80.0 4.6 0.0001 33.4 5.3 70 117-186 52-122 (125)
98 PF06379 RhaT: L-rhamnose-prot 77.9 33 0.00071 34.4 11.6 135 205-348 6-154 (344)
99 COG4975 GlcU Putative glucose 76.6 1.4 3.1E-05 41.9 1.7 89 76-178 182-270 (288)
100 PF04342 DUF486: Protein of un 76.1 4.8 0.0001 33.2 4.3 42 303-344 64-105 (108)
101 COG5070 VRG4 Nucleotide-sugar 74.9 16 0.00035 34.5 7.9 69 119-187 226-294 (309)
102 PF04657 DUF606: Protein of un 74.0 58 0.0013 28.1 13.7 64 123-186 70-138 (138)
103 COG3169 Uncharacterized protei 69.9 60 0.0013 26.6 11.3 44 303-346 71-114 (116)
104 PF04342 DUF486: Protein of un 65.3 15 0.00033 30.3 5.0 51 136-186 54-105 (108)
105 PF05297 Herpes_LMP1: Herpesvi 64.3 2.2 4.8E-05 41.3 0.0 98 134-240 40-139 (381)
106 KOG1444 Nucleotide-sugar trans 63.3 1.6E+02 0.0035 29.2 13.2 133 208-347 14-149 (314)
107 PF03119 DNA_ligase_ZBD: NAD-d 61.8 4.1 8.9E-05 25.3 0.9 13 3-15 1-13 (28)
108 KOG4831 Unnamed protein [Funct 60.1 14 0.00029 30.7 3.8 43 303-345 81-123 (125)
109 KOG2765 Predicted membrane pro 56.3 1.7E+02 0.0037 29.9 11.5 67 126-192 327-393 (416)
110 KOG1443 Predicted integral mem 53.7 1.8E+02 0.0038 29.0 10.9 73 115-187 241-313 (349)
111 KOG3912 Predicted integral mem 53.4 1.9E+02 0.0042 28.4 11.0 149 37-187 174-332 (372)
112 TIGR02865 spore_II_E stage II 51.8 3.9E+02 0.0084 30.0 16.4 44 144-187 11-54 (764)
113 KOG1442 GDP-fucose transporter 51.2 15 0.00034 35.6 3.3 146 26-186 176-324 (347)
114 KOG2234 Predicted UDP-galactos 49.1 1.1E+02 0.0023 30.8 8.8 61 286-346 103-163 (345)
115 PF05961 Chordopox_A13L: Chord 44.7 25 0.00055 26.5 2.9 25 329-353 4-28 (68)
116 PF03348 Serinc: Serine incorp 43.8 2.7E+02 0.0058 28.9 11.3 20 327-347 283-302 (429)
117 PF05077 DUF678: Protein of un 41.6 8.9 0.00019 29.4 0.1 23 3-25 27-49 (74)
118 COG3169 Uncharacterized protei 39.0 2.2E+02 0.0047 23.4 10.8 53 135-187 60-113 (116)
119 smart00734 ZnF_Rad18 Rad18-lik 38.7 14 0.00031 22.4 0.6 11 1-11 1-11 (26)
120 PTZ00074 60S ribosomal protein 38.5 26 0.00056 30.3 2.4 40 3-42 43-93 (135)
121 COG2995 PqiA Uncharacterized p 38.4 4.6E+02 0.01 27.0 12.2 24 69-92 302-329 (418)
122 PF13000 Acatn: Acetyl-coenzym 36.5 2.7E+02 0.0057 29.8 9.8 27 220-251 59-85 (544)
123 PF13347 MFS_2: MFS/sugar tran 36.3 2.6E+02 0.0057 28.1 9.9 24 161-184 279-302 (428)
124 PRK04570 cell division protein 36.3 94 0.002 29.4 5.9 32 333-368 13-44 (243)
125 PF09889 DUF2116: Uncharacteri 34.8 23 0.00049 26.2 1.3 31 3-33 5-36 (59)
126 COG0004 AmtB Ammonia permease 34.7 2.8E+02 0.0061 28.6 9.5 76 156-232 172-254 (409)
127 PF01199 Ribosomal_L34e: Ribos 34.6 23 0.00051 28.7 1.4 38 2-39 42-90 (94)
128 PRK04059 rpl34e 50S ribosomal 31.4 25 0.00054 28.2 1.1 35 3-37 36-81 (88)
129 PRK14778 lipoprotein signal pe 30.5 4.3E+02 0.0092 24.2 11.5 40 306-345 79-137 (186)
130 KOG1582 UDP-galactose transpor 30.1 5.4E+02 0.012 25.3 10.6 51 141-191 284-334 (367)
131 PF06609 TRI12: Fungal trichot 29.9 7.5E+02 0.016 26.9 16.1 19 172-190 239-257 (599)
132 COG5319 Uncharacterized protei 29.7 18 0.00039 30.8 0.1 14 2-15 33-46 (142)
133 KOG0569 Permease of the major 27.3 4.3E+02 0.0093 27.9 9.7 20 322-341 176-195 (485)
134 PF06123 CreD: Inner membrane 27.1 7.3E+02 0.016 25.8 12.0 58 164-232 318-377 (430)
135 TIGR01206 lysW lysine biosynth 26.9 30 0.00064 25.1 0.8 14 2-15 3-16 (54)
136 TIGR03644 marine_trans_1 proba 25.8 7.4E+02 0.016 25.5 12.0 23 209-231 244-266 (404)
137 PLN03166 60S ribosomal protein 24.7 49 0.0011 26.9 1.7 38 2-39 42-92 (96)
138 TIGR00819 ydaH p-Aminobenzoyl- 24.5 5.9E+02 0.013 27.2 10.1 39 273-311 156-195 (513)
139 PF12270 Cyt_c_ox_IV: Cytochro 24.4 4.7E+02 0.01 22.7 12.1 54 173-232 9-62 (137)
140 smart00746 TRASH metallochaper 24.4 33 0.00072 20.6 0.6 12 4-15 1-12 (39)
141 KOG1479 Nucleoside transporter 24.3 8E+02 0.017 25.3 11.4 51 296-346 147-201 (406)
142 PF04423 Rad50_zn_hook: Rad50 23.2 30 0.00066 24.6 0.2 13 3-15 22-34 (54)
143 TIGR00806 rfc RFC reduced fola 23.0 4.5E+02 0.0098 28.0 8.8 7 394-400 499-505 (511)
144 TIGR01995 PTS-II-ABC-beta PTS 22.6 1E+03 0.022 25.9 17.9 39 211-251 210-248 (610)
145 TIGR00836 amt ammonium transpo 21.0 5.9E+02 0.013 26.2 9.2 75 156-231 169-252 (403)
146 COG2855 Predicted membrane pro 20.8 8.6E+02 0.019 24.4 9.9 69 208-277 125-194 (334)
147 PHA02893 hypothetical protein; 20.6 31 0.00068 27.1 -0.1 13 3-15 36-48 (88)
148 PHA03049 IMV membrane protein; 20.5 1.3E+02 0.0029 22.7 3.1 23 329-351 4-26 (68)
149 PRK11715 inner membrane protei 20.2 9.9E+02 0.022 24.9 11.9 56 166-232 326-383 (436)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-59 Score=449.74 Aligned_cols=317 Identities=31% Similarity=0.486 Sum_probs=262.4
Q ss_pred ccccCCcccc---hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015676 24 AYDRHRHQVS---SKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVG 100 (403)
Q Consensus 24 ~~~~~~~~~~---~k~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~ 100 (403)
++|+|..... .|+.++.++-++.+. ++.++++++.+++++|.|+++||++|++|+++|..+++++.+.. .
T Consensus 2 ~~~~~~~~~~~~~~k~~~l~~~t~~~~~-----l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~--~ 74 (345)
T KOG2234|consen 2 AVKSMPIISSLSQMKYLSLIVLTAQNTA-----LTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY--A 74 (345)
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhh-----HHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH--h
Confidence 4444443344 444444444333333 55567777766688999999999999999999999999886441 1
Q ss_pred cccchhH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015676 101 EKSLLSF-STIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALAL 179 (403)
Q Consensus 101 ~~~~~~~-~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~l 179 (403)
+++..+. ++++..+|+++++++||++|++|||++|++++|+||+|||+++|+|+++||+|++++|+||++++||.|+++
T Consensus 75 ~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~l 154 (345)
T KOG2234|consen 75 KKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVL 154 (345)
T ss_pred hhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1222222 345556779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-CCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 015676 180 LLIGISVNQLRSLPE-GTS-ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIV 257 (403)
Q Consensus 180 l~~Gv~lv~~~~~~~-~~~-~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l 257 (403)
+++|++++|.+.... ++. .........|+.+++.+|++||+||||+||++|+. +.+.|+||+|||++|+++++..+.
T Consensus 155 L~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~ 233 (345)
T KOG2234|consen 155 LFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTIL 233 (345)
T ss_pred HHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999543221 111 11112346799999999999999999999999987 789999999999999999998876
Q ss_pred HHHhhcCCC--ccccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015676 258 ITAMFKGPS--SFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGI 335 (403)
Q Consensus 258 ~~~~~~g~~--~~~~~~g~~~~~~~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~ 335 (403)
.. +++. ..|+|+||++.+|++++++|+||+++++++||+|||.|+|++++++++++++|+++||.+||..+++|+
T Consensus 234 ~~---d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~ 310 (345)
T KOG2234|consen 234 LQ---DGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGA 310 (345)
T ss_pred hc---cccccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 53 3332 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 015676 336 SIVFISMHQFFSPLSK 351 (403)
Q Consensus 336 ~lVi~gv~ly~~~~~k 351 (403)
.+|+.++++|+..+.+
T Consensus 311 ~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 311 LLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 9999999999954443
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.1e-44 Score=341.94 Aligned_cols=228 Identities=32% Similarity=0.529 Sum_probs=201.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 109 TIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 109 ~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
+.+...|+.+++++||++|++||++.|++++++||++||+++|+|+++||++++++||||++++||+|++++++|+++++
T Consensus 9 ~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~ 88 (244)
T PF04142_consen 9 EVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ 88 (244)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence 45566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC--CCC------CChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 015676 189 LRSLPEGTS--ALG------LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITA 260 (403)
Q Consensus 189 ~~~~~~~~~--~~~------~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~ 260 (403)
.++....+. ... ......|++++++++++||+++||+||++|++ +.|+|.||+|||++|++++++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~~ 167 (244)
T PF04142_consen 89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLSD 167 (244)
T ss_pred cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 876533111 011 12345799999999999999999999999997 689999999999999999987754311
Q ss_pred hhcCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015676 261 MFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 338 (403)
Q Consensus 261 ~~~g~~~~~~~~g~~~~~~~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lV 338 (403)
.+.....|+|+||++++|.+++.+|+||+++++++||+|||.|+|++++++++++++|+++||.++|..+++|+.+|
T Consensus 168 -~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 168 -GSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred -ccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11113458999999999999999999999999999999999999999999999999999999999999999998875
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.94 E-value=4.7e-26 Score=213.40 Aligned_cols=219 Identities=25% Similarity=0.335 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 199 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~ 199 (403)
+.+|+..|+.+|++.++++.+.++..++.. |.|++.++++....++++++..||.++.++..|+..++.++........
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~ 80 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF 80 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence 578999999999999999999999999999 9999999999999999999999999999999999988765432111111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCC--CccccccCChhH
Q 015676 200 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDILQGHSKA 277 (403)
Q Consensus 200 ~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~--~~~~~~~g~~~~ 277 (403)
| ....|..+.+.++++++++++|.|+.+|++ +...|.+|+++++++.+.+...... .+++ ...+++++++..
T Consensus 81 g--~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 154 (222)
T TIGR00803 81 G--NPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLW---SDGTLISNFGFFIGYPTA 154 (222)
T ss_pred c--cHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhh---cccchhhccCcccCCchH
Confidence 2 345677888899999999999999998876 6779999999999998866544332 1111 123567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 278 TMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 278 ~~~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
+|.+++.++++|+++++++||.|+++|+++++++++++.++|+++||++++..+++|+.+|+.|+++|
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=2.1e-23 Score=204.55 Aligned_cols=291 Identities=18% Similarity=0.226 Sum_probs=214.0
Q ss_pred HHHHHHHhhhhhhhh-ccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHH
Q 015676 45 VGDCILVGLQPILVF-TTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVP 123 (403)
Q Consensus 45 ~~~~~~~~~~~il~~-~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vp 123 (403)
.+....+.+.+++++ ..+.+...+ .+..+.+++.+.-.+++.......+++. ....| ...++++
T Consensus 6 ~~i~~~~~~~g~~qE~i~~~~~~~~-~~~~lt~~q~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~ 70 (303)
T PF08449_consen 6 AGIFGGCCSYGILQEKIMTTPYGSP-FPLFLTFVQFAFNALFSFILLSLFKFPK-SRKIP-------------LKKYAIL 70 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhccccC-CCcCh-------------HHHHHHH
Confidence 333444444555664 233322212 3567889999888888877665444111 11111 2367899
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-C
Q 015676 124 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGL-P 202 (403)
Q Consensus 124 Ally~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~-~ 202 (403)
++++.+.+.+.+.+++|+|.+++++++++|++++++++++++|||++++||+++++.++|+++....+..++...... .
T Consensus 71 ~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~ 150 (303)
T PF08449_consen 71 SFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSF 150 (303)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999877654222111111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCC--CccccccCChhHHH-
Q 015676 203 VATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDILQGHSKATM- 279 (403)
Q Consensus 203 ~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~--~~~~~~~g~~~~~~- 279 (403)
....|+++++++.+++|+.++|+||+++++ +.+.+....+..+++.++.++....- ..++ +...+...++...+
T Consensus 151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~l--~~~~~~~~~~f~~~~p~~~~~ 227 (303)
T PF08449_consen 151 SSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFLL--PTGEFRSAIRFISAHPSVLLY 227 (303)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhHHHHHHHHhHHHHHH
Confidence 122399999999999999999999999987 56667777777788877766554430 0221 11122233332222
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCCcCC
Q 015676 280 --LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVK 353 (403)
Q Consensus 280 --~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~k~~ 353 (403)
+..+.++++...+...+|..++...+..++++.+++.++|+++||+++++.+++|+++|+.|+.+|+.+++|++
T Consensus 228 l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 228 LLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 22345677777888889999999999999999999999999999999999999999999999999998776653
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=4.8e-22 Score=195.82 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=182.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 015676 115 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 194 (403)
Q Consensus 115 r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~ 194 (403)
+..++|.+.|+++...|.+...|++|++.+.+|++.++.+++++++++++||+|+++.||+|+++.++|+.++...+...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999887765433
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 015676 195 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGH 274 (403)
Q Consensus 195 ~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~ 274 (403)
+++..+.+....|++++++++++.|++.|+.|+..|+. +......+++++|.+++.+.+.+ .|..+-.. + .|
T Consensus 157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~i---le~~~i~~-~-~w 228 (334)
T PF06027_consen 157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAI---LERSGIES-I-HW 228 (334)
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHh---eehhhhhc-c-CC
Confidence 22222233456799999999999999999999999874 45555677888888887765442 33322111 1 23
Q ss_pred hhHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 015676 275 SKATMLLIC----NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 350 (403)
Q Consensus 275 ~~~~~~~il----~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~ 350 (403)
++..+...+ .....-.++..++++.++..-+.....+.+++.++++++||+++++..++|.++|++|..+|+..++
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 443332221 1122334566788899988878887788999999999999999999999999999999999987555
Q ss_pred cCCC
Q 015676 351 KVKD 354 (403)
Q Consensus 351 k~~~ 354 (403)
+.++
T Consensus 309 ~~~~ 312 (334)
T PF06027_consen 309 PEEE 312 (334)
T ss_pred cccc
Confidence 4444
No 6
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.5e-21 Score=181.68 Aligned_cols=305 Identities=15% Similarity=0.158 Sum_probs=239.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhhhhhhh-cc-c---cCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015676 28 HRHQVSSKTRFLNVALVVGDCILVGLQPILVF-TT-K---VDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEK 102 (403)
Q Consensus 28 ~~~~~~~k~~~l~~l~~~~~~~~~~~~~il~~-~s-~---~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~ 102 (403)
|..+...+.....++|+.+....|..++++++ .. + +|+++.=++.-.+|.+.++.++++..++...+.. ..+..
T Consensus 3 ~~~~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~a 81 (327)
T KOG1581|consen 3 VNSGGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVA 81 (327)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCC
Confidence 44444556677788899999999999998884 22 2 1333222344668999999999997776544332 21222
Q ss_pred cchhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015676 103 SLLSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLI 182 (403)
Q Consensus 103 ~~~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~ 182 (403)
| .+.+...|+...+...++|.|++|++.+|..+.+++|.+.++++..++.|+|++.+++++.++...
T Consensus 82 p-------------l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~ 148 (327)
T KOG1581|consen 82 P-------------LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISL 148 (327)
T ss_pred c-------------hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 2 346788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015676 183 GISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMF 262 (403)
Q Consensus 183 Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~ 262 (403)
|+.++.+.+..++....+.+...+|+.++...-++.|+.+..++++.|+. +.+.+.+...+.+|+.+.+...++ .
T Consensus 149 GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li----~ 223 (327)
T KOG1581|consen 149 GVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI----L 223 (327)
T ss_pred heeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh----c
Confidence 99998776543333344556678899999999999999999999999975 788898899999999999887744 2
Q ss_pred cCC--CccccccCChhHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015676 263 KGP--SSFDILQGHSKATMLL---ICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISI 337 (403)
Q Consensus 263 ~g~--~~~~~~~g~~~~~~~~---il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~l 337 (403)
+|. +...|...++...|-+ -...++|+.++.+.+...++++-...++.+-++++++|.++||++++..+++|..+
T Consensus 224 qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~i 303 (327)
T KOG1581|consen 224 QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLI 303 (327)
T ss_pred CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeee
Confidence 332 1223444444433332 34578899999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCc
Q 015676 338 VFISMHQFFSPLSK 351 (403)
Q Consensus 338 Vi~gv~ly~~~~~k 351 (403)
|+.|+++=...+.|
T Consensus 304 VFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 304 VFGGIFLEILLKKK 317 (327)
T ss_pred ehHHHHHHHHHHHh
Confidence 99998865544344
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.88 E-value=1.8e-19 Score=180.33 Aligned_cols=277 Identities=13% Similarity=0.098 Sum_probs=180.1
Q ss_pred HhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHHHHHHHHH
Q 015676 51 VGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVPAFLYAIN 130 (403)
Q Consensus 51 ~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~l~ 130 (403)
|+.+-++.|.+-++| .++...++.+-.+-.++.+.+.+..+++.. .+..+ +|+...+++.+++.+++
T Consensus 25 ~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~~~-------~~~~~~l~l~g~~g~~~ 91 (358)
T PLN00411 25 VVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPPLS-------VSILSKIGLLGFLGSMY 91 (358)
T ss_pred HHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcch-------HHHHHHHHHHHHHHHHH
Confidence 444445556554444 445556677766654444443333222111 11101 22333566677766677
Q ss_pred HHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC---------
Q 015676 131 NYLKFIMQLYFNPATVKMLSNLKVFVIALLLKII------MKRRFSIIQWEALALLLIGISVNQLRSLPEG--------- 195 (403)
Q Consensus 131 n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~------L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~--------- 195 (403)
+.+.|+++++++++...++.++.|++|+++++++ +|||++++||+++++.++|++++...+.+..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 8899999999999999999999999999999999 6999999999999999999998754321100
Q ss_pred -----C--CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhcCCCc
Q 015676 196 -----T--SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYG-YGAIFNFLGIVITAMFKGPSS 267 (403)
Q Consensus 196 -----~--~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~-~g~i~~~~~~l~~~~~~g~~~ 267 (403)
. ...+......|.++.++++++++++.+..++..+++ ++....+.+... .+..+..+.+ ..++...
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~l----~~~~~~~ 245 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAFTVSFLYTVCVSIVTSMIGL----VVEKNNP 245 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHHHHH----HHccCCc
Confidence 0 000111124588999999999999999999988775 233222322222 2222222222 2332211
Q ss_pred cccccCChhHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 015676 268 FDILQGHSKATMLLICNNAAQGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMH 343 (403)
Q Consensus 268 ~~~~~g~~~~~~~~il~~a~gg~----~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ 343 (403)
......++...+ .+++.++... +-.+.+|+.++...+....+.|+++.+++++++||++++.+++|+++|+.|++
T Consensus 246 ~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 246 SVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred ccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 111223333332 3444444322 22235677888888899999999999999999999999999999999999999
Q ss_pred HhcC
Q 015676 344 QFFS 347 (403)
Q Consensus 344 ly~~ 347 (403)
+...
T Consensus 325 l~~~ 328 (358)
T PLN00411 325 AVMW 328 (358)
T ss_pred HHHh
Confidence 9875
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.86 E-value=8.4e-19 Score=175.38 Aligned_cols=299 Identities=12% Similarity=0.121 Sum_probs=198.7
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015676 21 VSRAYDRHRHQVSSKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVG 100 (403)
Q Consensus 21 ~~~~~~~~~~~~~~k~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~ 100 (403)
..+.+++.-..++.|-..++..+...+... -+..|+.-++ ++| |.++..++-++..+++.++.. .+.+.. +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~wy~~s~~~----~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~~-~~~~~~-~ 105 (350)
T PTZ00343 35 IYHSLFESFPNFKWKLALLFLTWYALNVLY----VVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYWA-TGFRKI-P 105 (350)
T ss_pred cccchhhccCcccHHHHHHHHHHHHHHHHH----HHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHHH-hCCCCC-C
Confidence 333444444445666666666655555422 1223322222 223 778888888888666554422 111110 0
Q ss_pred cccchhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015676 101 EKSLLSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 180 (403)
Q Consensus 101 ~~~~~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll 180 (403)
..+ +.+. ........++++...+...++++++.+++.+++++.+.|++|++++++++|||+++++|+++++.
T Consensus 106 ~~~--~~~~------~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~ 177 (350)
T PTZ00343 106 RIK--SLKL------FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPI 177 (350)
T ss_pred CCC--CHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 000 0111 12356778888887788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CchhHHHHHH--HHHHHHHHHHHH
Q 015676 181 LIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYD--TSIYHQNLFL--YGYGAIFNFLGI 256 (403)
Q Consensus 181 ~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~--~s~~~~n~~l--~~~g~i~~~~~~ 256 (403)
++|+.+....+ ...+..|+++++++++++++.+++.|+.+++... .+....+.+. ..+|.++.+|..
T Consensus 178 v~Gv~l~~~~~---------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~ 248 (350)
T PTZ00343 178 VGGVALASVKE---------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLV 248 (350)
T ss_pred HHHHHheeccc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999975421 1234569999999999999999999999876411 1222233333 446666666654
Q ss_pred HHHHhhcCCCccc-------cccCChh-HHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhC
Q 015676 257 VITAMFKGPSSFD-------ILQGHSK-ATMLLICNNAAQGILSS----FFFKYADTILKKYSSTVATIFTGLASAALFG 324 (403)
Q Consensus 257 l~~~~~~g~~~~~-------~~~g~~~-~~~~~il~~a~gg~~vs----~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfg 324 (403)
+. .++..... .+..+.+ ..+..++..++...+.. +.+++.++++.+.+..+.+++++++|+++||
T Consensus 249 ~~---~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g 325 (350)
T PTZ00343 249 LF---FEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ 325 (350)
T ss_pred HH---HhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC
Confidence 32 22211000 0111211 11222223333333322 4678899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCC
Q 015676 325 HTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 325 e~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
|++|..+++|.++++.|+++|+..
T Consensus 326 e~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 326 TQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred CCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999864
No 9
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.85 E-value=3.8e-19 Score=166.47 Aligned_cols=289 Identities=17% Similarity=0.165 Sum_probs=198.1
Q ss_pred hhhhccc---cCC----cccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHhhhhhhHHHHHHHHH
Q 015676 56 ILVFTTK---VDG----GFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEK-SLLSFSTIAQAARNNVLLAVPAFLY 127 (403)
Q Consensus 56 il~~~s~---~~g----~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~vpAlly 127 (403)
++.||+. .+| ..++-.+...|+.|+..+.+-..+-.+.+++....+. ...+.. ...-+.+.+..||+|.
T Consensus 20 l~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~---~~pf~p~lfl~Pal~D 96 (372)
T KOG3912|consen 20 LVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQD---SSPFNPVLFLPPALCD 96 (372)
T ss_pred HHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccc---cCCCCcceecChHHHH
Confidence 4567765 232 2456667778999998887655444333322111100 000000 0011234567799999
Q ss_pred HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCChhhH
Q 015676 128 AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA-LGLPVATG 206 (403)
Q Consensus 128 ~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~-~~~~~~~~ 206 (403)
.....++|+++.+.+++.||+++...++||++|+..+|||+++.+||+++....+|++++...+....+.. ......+.
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iit 176 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIIT 176 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999876543211111 11223456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhcCCC----ccccccCChhHHHH-
Q 015676 207 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYG-AIFNFLGIVITAMFKGPS----SFDILQGHSKATML- 280 (403)
Q Consensus 207 G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g-~i~~~~~~l~~~~~~g~~----~~~~~~g~~~~~~~- 280 (403)
|+++++.+.++-|..-|+.||.+|++ +.++..-.-+-..|| ++++++.+....+..|.+ ..+.++.|... |.
T Consensus 177 GdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~-~~~ 254 (372)
T KOG3912|consen 177 GDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA-FAA 254 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH-HHH
Confidence 99999999999999999999999987 344433333446777 444444443333333311 11222222210 10
Q ss_pred ----HHHHHHHHHHHHH---------HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 281 ----LICNNAAQGILSS---------FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 281 ----~il~~a~gg~~vs---------~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
..+..+.+|..++ .+.|+.++.++....++++.+.+++++.+++|.+...++.|.++.+.|+.+|+.
T Consensus 255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122233333333 567999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 015676 348 PL 349 (403)
Q Consensus 348 ~~ 349 (403)
-.
T Consensus 335 il 336 (372)
T KOG3912|consen 335 IL 336 (372)
T ss_pred HH
Confidence 43
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.85 E-value=1.5e-18 Score=169.74 Aligned_cols=219 Identities=12% Similarity=0.149 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015676 118 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 197 (403)
Q Consensus 118 ~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~ 197 (403)
....+.++++++++.+.+++++++++++++++.++.|+++++++++++|||+++++|.++++.++|+++....+
T Consensus 66 ~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~------ 139 (302)
T TIGR00817 66 KLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE------ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc------
Confidence 35677788888999999999999999999999999999999999999999999999999999999998753211
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccc---
Q 015676 198 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS--FDILQ--- 272 (403)
Q Consensus 198 ~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~--~~~~~--- 272 (403)
.+.+..|+++++++++++++..++.|+..+++ +.+.+..+.+....+.++.+|.... .++... .+...
T Consensus 140 ---~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~ 212 (302)
T TIGR00817 140 ---LSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAIS 212 (302)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhc
Confidence 11234699999999999999999999988732 2333444445455565555554332 232110 00000
Q ss_pred CChh-HHHHHHHHHHHHH-----HHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 273 GHSK-ATMLLICNNAAQG-----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 273 g~~~-~~~~~il~~a~gg-----~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
..+. ..+..++..+.+. ......+|+.++.+.+....+.+++++++|++++||++|..+++|+++++.|+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 213 GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 0111 1222122222111 122246788999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 015676 347 SPL 349 (403)
Q Consensus 347 ~~~ 349 (403)
..+
T Consensus 293 ~~k 295 (302)
T TIGR00817 293 RVK 295 (302)
T ss_pred HHh
Confidence 743
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.84 E-value=3.5e-18 Score=166.98 Aligned_cols=277 Identities=14% Similarity=0.176 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHh
Q 015676 34 SKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQA 113 (403)
Q Consensus 34 ~k~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (403)
+|......+++...++.++..++..|.. . +++|..+++.+-++..++...++..+++.. . .+...+.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~-----~---~~~~~~~ 69 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y----YVPADEILTHRVIWSFFFMVVLMSICRQWS-----Y---LKTLIQT 69 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHHHHHHHHHHHccHH-----H---HHHHHcC
Confidence 3444556677778888899998888854 2 277888999998887654444333222110 0 0000011
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 015676 114 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 193 (403)
Q Consensus 114 ~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~ 193 (403)
.|+.......++++++++.+.|+|++++++++..++.++.|+++++++++++|||++++||.++++.++|+.++..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-- 147 (296)
T PRK15430 70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc--
Confidence 222223345567788999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 015676 194 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQG 273 (403)
Q Consensus 194 ~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g 273 (403)
++ . .+++++++++++++.++.|+..++. .......+.+...++.+. .+. ..+... .....
T Consensus 148 -~~----~------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~--~~~~~ 207 (296)
T PRK15430 148 -GS----L------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSST--SHMGQ 207 (296)
T ss_pred -CC----c------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCc--ccccC
Confidence 11 1 1346778899999998888864321 112223333332222221 110 011110 00111
Q ss_pred ChhHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 274 HSKATMLLIC----NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 274 ~~~~~~~~il----~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
.++..|..++ ..+++..+....+|+.++...+...++.++++.+++++++||+++..+++|+++|+.|+.+.
T Consensus 208 ~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 208 NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 1111122222 33355566667789999999999999999999999999999999999999999997765433
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.83 E-value=2e-17 Score=161.36 Aligned_cols=276 Identities=12% Similarity=0.123 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHh
Q 015676 34 SKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQA 113 (403)
Q Consensus 34 ~k~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (403)
.||..-.++.+....+.+++..+..|...++ .+|..+++++-+.-.++-+.+...++++ . + +++.+
T Consensus 3 ~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~----~--~~~~~--- 68 (292)
T PRK11272 3 FRQLLPLFGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-L----P--TLRQW--- 68 (292)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-C----C--cHHHH---
Confidence 4677777778888888999998888865443 6788888888887765544444332211 0 1 11111
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHH-hccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 114 ARNNVLLAVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 114 ~r~~~~~~vpAll-y~l~n~L~f~al-~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
....+.+.+ .+.++.+.+++. ++.+++...++.++.|+++++++++ +|||++++||.++++.++|+.++..++
T Consensus 69 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~ 143 (292)
T PRK11272 69 ----LNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG 143 (292)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCc
Confidence 123444544 457788889998 9999999999999999999999985 799999999999999999999875432
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 015676 192 LPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDIL 271 (403)
Q Consensus 192 ~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~ 271 (403)
.. +....|.++.+++++++|+++++.|+..+. .+......++.+ +.+...+... ..+.. ..
T Consensus 144 ~~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~----~~~~~---~~ 204 (292)
T PRK11272 144 NL--------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLA-AGVVLLIASL----LSGER---LT 204 (292)
T ss_pred cc--------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHH-HHHHHHHHHH----HcCCc---cc
Confidence 11 122358899999999999999999886433 233333334333 3222222211 22211 11
Q ss_pred cCChhHHHHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 272 QGHSKATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 272 ~g~~~~~~~~il~~a~gg~~vs-----~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
...+...|..+++.++.+..++ +.+|+.++...+....++|+++.+++++++||++|..+++|.++++.|+++.+
T Consensus 205 ~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 205 ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 1123445555555555554433 44577787788888889999999999999999999999999999999998876
Q ss_pred C
Q 015676 347 S 347 (403)
Q Consensus 347 ~ 347 (403)
.
T Consensus 285 ~ 285 (292)
T PRK11272 285 L 285 (292)
T ss_pred H
Confidence 5
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.83 E-value=1.9e-17 Score=161.96 Aligned_cols=274 Identities=17% Similarity=0.147 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHH
Q 015676 43 LVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAV 122 (403)
Q Consensus 43 ~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v 122 (403)
+....++.+++..+.+|..-++ .+|...++++-.+-.++.+.+ . .++ + .+ ++ ....
T Consensus 8 ~~l~~~~~Wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~~~l~~~-~-~~~-~----~~---~~----------~~~~ 63 (299)
T PRK11453 8 LALLVVVVWGLNFVVIKVGLHN----MPPLMLAGLRFMLVAFPAIFF-V-ARP-K----VP---LN----------LLLG 63 (299)
T ss_pred HHHHHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHH-h-cCC-C----Cc---hH----------HHHH
Confidence 3555677888888888754332 678888888866543222211 1 111 1 11 11 1111
Q ss_pred HHH-HHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 015676 123 PAF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALG 200 (403)
Q Consensus 123 pAl-ly~l~n~L~f~al~~-l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~ 200 (403)
-++ .+..+..+.|.++++ .+++...++.++.|+++++++++++|||++++||+++++.++|+.++..++.. +
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~------~ 137 (299)
T PRK11453 64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN------G 137 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC------C
Confidence 133 234555677889887 78899999999999999999999999999999999999999999987543211 1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhcCCCcc-ccccCChhHH
Q 015676 201 LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSF-DILQGHSKAT 278 (403)
Q Consensus 201 ~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~-~~~~l~~~~~~g~~~~-~~~~g~~~~~ 278 (403)
.+.+..|+++.++++++++.+.++.++..++. .++...... .+...+. .+........+++... ..+..++...
T Consensus 138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHS--TRPAVMSLV--VWSALIPIIPFFVASLILDGSATMIHSLVTIDMTT 213 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccchhHHH--HHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHH
Confidence 11234599999999999999999999976553 222111111 1111111 1222122223332110 1123445566
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 015676 279 MLLICNNAAQGILSSFFF-----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 350 (403)
Q Consensus 279 ~~~il~~a~gg~~vs~v~-----Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~ 350 (403)
|..+++.++.+..+++.. |+.++...+....+.|+++.+++++++||+++..+++|+++|+.|+++-..+..
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 777777777776666554 556777777888899999999999999999999999999999999988765443
No 14
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2e-19 Score=164.63 Aligned_cols=284 Identities=14% Similarity=0.147 Sum_probs=209.8
Q ss_pred HHHHHHHHHHhhhhhhhh-cccc----CC----cccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Q 015676 42 ALVVGDCILVGLQPILVF-TTKV----DG----GFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQ 112 (403)
Q Consensus 42 l~~~~~~~~~~~~~il~~-~s~~----~g----~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (403)
+|.++..++|-..+|.++ ..+. +| ++.|. .+.||+++...-+++-+++..+.+.+. ++.
T Consensus 16 ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfa-laLVf~qC~~N~vfAkvl~~ir~~~~~--D~t--------- 83 (337)
T KOG1580|consen 16 ICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFA-LALVFFQCTANTVFAKVLFLIRKKTEI--DNT--------- 83 (337)
T ss_pred EEecchhheehhhhhHHHHhhccccCCCCcchheehHH-HHHHHHHHHHHHHHHHhheeecccccc--cCC---------
Confidence 466667777777777763 3331 12 23443 377999999999888665433222111 111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 015676 113 AARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL 192 (403)
Q Consensus 113 ~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~ 192 (403)
..+.|+-.++-|.+...-...|++++|.+|..+-+++||+.++++.+++.+++++++++.+++++.+||+++.+.+.
T Consensus 84 ---~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 84 ---PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred ---cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 13468888999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--ccc
Q 015676 193 PEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS--FDI 270 (403)
Q Consensus 193 ~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~--~~~ 270 (403)
..+... ......|-++.+++-.+.|+.++.+|++.+.+ .++-..++..+.+|+.+....+++ +.|+.. ..|
T Consensus 161 Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y-q~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~yF 233 (337)
T KOG1580|consen 161 KVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRASY-QRTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFYF 233 (337)
T ss_pred ccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHHhh-ccCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHHH
Confidence 222110 01123478889999999999999999998776 233333445566788877665554 445421 112
Q ss_pred ccCChhHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 271 LQGHSKATML---LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 271 ~~g~~~~~~~---~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
-+.++...|- +.+...+|+.++...+-+.++.+++..++.+..++++.|+++|+++++..+|+|..+|+.+...-..
T Consensus 234 ~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 234 VQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 2344433332 2345678999999999999999999999999999999999999999999999999999999765433
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.79 E-value=1.5e-16 Score=151.62 Aligned_cols=205 Identities=15% Similarity=0.111 Sum_probs=151.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015676 120 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 198 (403)
Q Consensus 120 ~~vpA-lly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~ 198 (403)
+.+.+ +...+++.+.|+|++++++++..++.++.|+++++++.+++|||++++||+++.+.++|+.++..++. .
T Consensus 49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~--- 123 (260)
T TIGR00950 49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L--- 123 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c---
Confidence 34444 45679999999999999999999999999999999999999999999999999999999998754331 1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHH
Q 015676 199 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKAT 278 (403)
Q Consensus 199 ~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~ 278 (403)
+....|+++.++++++++...++.++..++. +.+....+.+....+.++..+... ..++.. ..+...
T Consensus 124 ---~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~ 190 (260)
T TIGR00950 124 ---SINPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQ 190 (260)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHH
Confidence 1234588999999999999999999987654 222222232333344443333322 222211 112333
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 015676 279 MLLICNN-----AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM 342 (403)
Q Consensus 279 ~~~il~~-----a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv 342 (403)
|..++.. .++..+....+|+.+....+...++.++++.+++++++||+++...++|..+++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 191 WGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3333333 334444556678888888899999999999999999999999999999999999885
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.75 E-value=4.9e-15 Score=144.65 Aligned_cols=264 Identities=12% Similarity=-0.010 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHH
Q 015676 41 VALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLL 120 (403)
Q Consensus 41 ~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 120 (403)
+.++...++.++....+.|+.-++ +++...++.+-++-.++.+.+. +..+.. . +++ +....
T Consensus 14 ~~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~-~~~~~~----~---~~~-------~~~~~ 74 (293)
T PRK10532 14 ILLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIF-KPWRLR----F---AKE-------QRLPL 74 (293)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHH-hHHhcc----C---CHH-------HHHHH
Confidence 355555666777777777755432 6777888888777755544332 111110 0 011 11233
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALG 200 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~ 200 (403)
...++++...+.+.|++++++|++...++..+.|+++++++. ||.++.+| +.+.++|+.++..++.+.+ +
T Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~~----~ 144 (293)
T PRK10532 75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDVS----H 144 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCcc----c
Confidence 455667788889999999999999999999999999998873 55555555 5567899887643321111 1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHH
Q 015676 201 LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 280 (403)
Q Consensus 201 ~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~ 280 (403)
....|.++.+++++++++..++.+|..++. +......+. +++.++..+... ..+.. ..+++..|.
T Consensus 145 --~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~~-~~~~~~l~~~~~----~~~~~-----~~~~~~~~~ 209 (293)
T PRK10532 145 --VDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIGS-LIAALIFVPIGA----LQAGE-----ALWHWSILP 209 (293)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHHH-HHHHHHHHHHHH----HccCc-----ccCCHHHHH
Confidence 124589999999999999999999987653 233333332 333333333222 22211 112333343
Q ss_pred HHHHHHHHHH-----HHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 281 LICNNAAQGI-----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 281 ~il~~a~gg~-----~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
..++.++.+. +..+.+|+.++...+...+++|+++.+++++++||+++..+++|+++|+.|+..+..+
T Consensus 210 ~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 210 LGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3334444443 4445668888888999999999999999999999999999999999999999888654
No 17
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.75 E-value=1.6e-15 Score=148.10 Aligned_cols=270 Identities=12% Similarity=0.055 Sum_probs=173.5
Q ss_pred HHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHH
Q 015676 43 LVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAV 122 (403)
Q Consensus 43 ~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v 122 (403)
+....++.+++.-+..|..-++ ++|....+++-.+-.++-..+ . .+++.+ .++ .+ ....
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~--~-~~~~~~-~~~----------~~---~~~~ 66 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLT--V-GFPRLR-QFP----------KR---YLLA 66 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHH--c-cccccc-ccc----------HH---HHHH
Confidence 4555667777776666754333 678777777754443332211 1 111100 000 01 1122
Q ss_pred HHHHHHHHHHHHHHHHh----ccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC-CC
Q 015676 123 PAFLYAINNYLKFIMQL----YFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG-TS 197 (403)
Q Consensus 123 pAlly~l~n~L~f~al~----~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~-~~ 197 (403)
-++.++.++.+.|.+++ ++++....++.++.|+++++++++++|||++++||.++++.++|+.++..++...+ .+
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 146 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE 146 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence 34446677777787775 46888889999999999999999999999999999999999999988765432100 00
Q ss_pred -CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChh
Q 015676 198 -ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK 276 (403)
Q Consensus 198 -~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~ 276 (403)
..+......|++++++++++++++.++.|+..++. ++. . ......+..+ .+... .+++. ....++
T Consensus 147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~-~--~~~~~~~~~l-~~~~~----~~~~~----~~~~~~ 212 (295)
T PRK11689 147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGI-T--LFFILTALAL-WIKYF----LSPQP----AMVFSL 212 (295)
T ss_pred hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--Cch-h--HHHHHHHHHH-HHHHH----HhcCc----cccCCH
Confidence 00111123589999999999999999999986553 222 1 1111122221 11111 22211 122344
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 277 ATMLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 277 ~~~~~il~~a~----gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
..|..+++.++ +..+-.+.+|+.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++...
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 44544444443 222334567888888899999999999999999999999999999999999999876543
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.72 E-value=2.8e-15 Score=145.42 Aligned_cols=208 Identities=12% Similarity=0.110 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALG 200 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~ 200 (403)
..-++....++.+.+.++++.|++....+.++.|+++++++++++|||++++||+++++.+.|+.++..++.. .
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~----- 140 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q----- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c-----
Confidence 4445567899999999999999999999999999999999999999999999999999999999987654311 1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhcCCCccccccCChhHHH
Q 015676 201 LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSFDILQGHSKATM 279 (403)
Q Consensus 201 ~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~-~~~~l~~~~~~g~~~~~~~~g~~~~~~ 279 (403)
....|..++++++++++++.++.|+..++. +......+...++.++. .+..... ...++.. .. .+...+
T Consensus 141 --~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~ 210 (281)
T TIGR03340 141 --HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLY-LKRHGRS---MF-PYARQI 210 (281)
T ss_pred --cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHH-HHHhccc---hh-hhHHHH
Confidence 112366778889999999888777654332 11111112222222221 2221111 1111110 00 111112
Q ss_pred HHHHHHH-----HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 015676 280 LLICNNA-----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 344 (403)
Q Consensus 280 ~~il~~a-----~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~l 344 (403)
..+++.+ ++..+....+++.++...+...+++++++.+++++++||+++..+++|+++|+.|+++
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 2222222 2333333455666665556666789999999999999999999999999999999875
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.67 E-value=3.5e-13 Score=129.18 Aligned_cols=210 Identities=18% Similarity=0.193 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK-IIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 197 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~-~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~ 197 (403)
......+.....+.+.|.++++++++..+++.++.|++++++++ +++|||+++++|.++++.++|+.++..++.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~- 150 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI- 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-
Confidence 34555667789999999999999999999999999999999997 7779999999999999999999998766532211
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH-HHHHHHHHHHHHHHHHHHHhhcCCCccccccCChh
Q 015676 198 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQN-LFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK 276 (403)
Q Consensus 198 ~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n-~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~ 276 (403)
. ...|.++.++++++++++.++.|+.. +. .+....- .++. +..+ +......... + ...+.
T Consensus 151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~----~~~~~~~~~~---~--~~~~~ 211 (292)
T COG0697 151 ----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQLL--LALL----LLLLFFLSGF---G--APILS 211 (292)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHH--HHHH----HHHHHHhccc---c--ccCCH
Confidence 0 34689999999999999999999987 32 2221111 1111 1111 1111011111 0 11222
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 277 ATMLLICNNA-----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 277 ~~~~~il~~a-----~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
..|..+...+ ++..+....++..+....+......++++.+++++++||+++..+++|.++++.|+.+.+..
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 2333333333 33444445566777777777778899999999999999999999999999999999888765
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.58 E-value=1.9e-12 Score=123.70 Aligned_cols=247 Identities=11% Similarity=0.020 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHH--Hhhhhh
Q 015676 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIA--QAARNN 117 (403)
Q Consensus 40 ~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~r~~ 117 (403)
..+++...++.+++.+++.|.. .+ .+|.++++.+-++-.++-..+....++++. . .+++. +..+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~-----~~~~~~~~~~~~~ 70 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KP----LPATDILGHRMIWSFPFMLLSVTLFRQWAA--L-----IERLKRIQKRPLI 70 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cc----CCHHHHHHHHHHHHHHHHHHHHHHHcchHH--H-----HHHHhCcccchHH
Confidence 3456777888899999998863 22 778899999988875443332222221100 0 00110 000112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015676 118 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 197 (403)
Q Consensus 118 ~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~ 197 (403)
....+.+++..+++.+.|+|++++++++..++.++.|+++++++++++|||++++||+++++.++|++++..++ ++
T Consensus 71 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~- 146 (256)
T TIGR00688 71 LSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS- 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC-
Confidence 24567778889999999999999999999999999999999999999999999999999999999999874321 11
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhH
Q 015676 198 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA 277 (403)
Q Consensus 198 ~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~ 277 (403)
.. .++++++++++++.++.|+..+++ .. +.. . +.+...+.........+........ +..
T Consensus 147 -----~~----~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 206 (256)
T TIGR00688 147 -----LP----WEALVLAFSFTAYGLIRKALKNTD---LA--GFC---L-ETLSLMPVAIYYLLQTDFATVQQTN--PFP 206 (256)
T ss_pred -----ch----HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHH---H-HHHHHHHHHHHHHHHhccCcccccC--chh
Confidence 11 346778888999888888864321 11 111 1 1111112111111111111000011 111
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHH
Q 015676 278 TMLLICN----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAL 322 (403)
Q Consensus 278 ~~~~il~----~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~l 322 (403)
.|..++. .+++..+....+|+.++-..+...++.|+++.++++++
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2322222 34445566677899999999999999999999998764
No 21
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2e-14 Score=134.83 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015676 119 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 197 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~-l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~ 197 (403)
.|++.-.++.+.|.+..+|+.+ ++.+...++++..++.+++++++++|||+|.+|+.+++++++|+++..+-+..++..
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 4666667777888888999987 788999999999999999999999999999999999999999999876544322111
Q ss_pred --------CCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH--H-----
Q 015676 198 --------ALGLPV--ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT--A----- 260 (403)
Q Consensus 198 --------~~~~~~--~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~--~----- 260 (403)
....+. ..+|+.+...+.+.||..|+|+|..+|++. ..|..++ ++...+++|..+.. .
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~Eal---FytH~LsLP~Flf~~~div~~~ 220 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEAL---FYTHFLSLPLFLFMGDDIVSHW 220 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHH---HHHHHhccchHHHhcchHHHHH
Confidence 011112 345777888899999999999999999973 4444444 45677777765431 0
Q ss_pred --hhcCCCc-cccccCChhHHHHHHHHHHHHH-HHHHHHHHH---hhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHH
Q 015676 261 --MFKGPSS-FDILQGHSKATMLLICNNAAQG-ILSSFFFKY---ADTILKKYSSTVATIFTGLASAALFGHTLTMNFIL 333 (403)
Q Consensus 261 --~~~g~~~-~~~~~g~~~~~~~~il~~a~gg-~~vs~v~Ky---~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~l 333 (403)
.+.++.- ...+...-+..|..++.+-+.+ .++..|+-. .++.+.+...+++..++.++|+..|.+++|+++++
T Consensus 221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l 300 (330)
T KOG1583|consen 221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL 300 (330)
T ss_pred HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence 1122210 0001111123343333333333 333333321 23444455556788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcCCC
Q 015676 334 GISIVFISMHQFFSPLSKVKD 354 (403)
Q Consensus 334 G~~lVi~gv~ly~~~~~k~~~ 354 (403)
|+++|+.|+.+|.....++|+
T Consensus 301 Ga~lVF~Gt~~fa~~~~~~~~ 321 (330)
T KOG1583|consen 301 GAALVFFGTLLFANVWNHPKA 321 (330)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 999999999999887777663
No 22
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.46 E-value=1.2e-11 Score=117.82 Aligned_cols=263 Identities=18% Similarity=0.214 Sum_probs=175.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Q 015676 64 DGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNP 143 (403)
Q Consensus 64 ~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~ 143 (403)
++.++|+ .-++-+.-++|++++.......+++.... +...+|+. ..| +++..|+.-++.-.+..++++|++.
T Consensus 39 ~~~f~fP-Lf~ts~h~~v~flfa~~~~~l~~~~~~r~-r~~~sw~~---~Lr---~~aPtalata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 39 TKNFHFP-LFVTSLHLAVKFLFAALSRRLYQCSVPRA-RVVLSWRD---YLR---RLAPTALATALDIGLSNWSLEYVTL 110 (349)
T ss_pred hcCcCCc-hHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccCCcHHH---HHH---Hhhhhhhhhhcccccccceeeeeee
Confidence 3446663 46677889999998876533332222111 11122322 233 5677788888899999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 015676 144 ATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASV 223 (403)
Q Consensus 144 ~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~V 223 (403)
+.|++.++..++|+-+|+.+|-=||.++.=..-.++..+|+.+..+++. +.+..|.++++.+++++|+...
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT---------qf~i~Gf~lv~~aS~~sGlRW~ 181 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST---------QFNIEGFFLVLAASLLSGLRWA 181 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc---------ceeehhHHHHHHHHHhhhhhHH
Confidence 9999999999999999999998899999988889999999998877643 1345699999999999999999
Q ss_pred HHHHHhhccC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---cccccCChh-HHHHHHHHHHHHHHHHHHHHH
Q 015676 224 FNEYALKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS---FDILQGHSK-ATMLLICNNAAQGILSSFFFK 297 (403)
Q Consensus 224 y~ekllK~~~--~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~---~~~~~g~~~-~~~~~il~~a~gg~~vs~v~K 297 (403)
+.++++++++ ..++.....++.-+-.+ ..+.....+||+.. ...|+..+. ..+..+...+.+|... +.+-
T Consensus 182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~ 257 (349)
T KOG1443|consen 182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLE 257 (349)
T ss_pred HHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHH
Confidence 9999998762 12222222222221111 11222344677631 122222221 2333344445555432 2222
Q ss_pred H--------hhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 298 Y--------ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 298 y--------~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
. .+.++-+.+--..-+.+.+++..+.+++++..-++|..+...|+..|..
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 2 2334444454455578889999999999999999999999999999844
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.43 E-value=3.6e-12 Score=119.44 Aligned_cols=221 Identities=14% Similarity=0.079 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 198 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~ 198 (403)
.|.+.|.+-.....|..-++.|++.++..+.+.+|.+.+.+-+.++=|+|+....+.|..++.+|++++.+.+....
T Consensus 108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s--- 184 (367)
T KOG1582|consen 108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS--- 184 (367)
T ss_pred HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC---
Confidence 46788888888888999999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ccccccCChh
Q 015676 199 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSK 276 (403)
Q Consensus 199 ~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~--~~~~~~g~~~ 276 (403)
-+++..|+.++-++-++.|+-|=.+||.+|..+..+ .+|.+++..+.++.++...+..|+- .+.+...+++
T Consensus 185 --PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-----~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 185 --PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-----SEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV 257 (367)
T ss_pred --CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-----ceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence 124567888888888889998989999999874333 3333333333334333322345541 1223344445
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCC
Q 015676 277 ATMLLICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 349 (403)
Q Consensus 277 ~~~~~il~~a----~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~ 349 (403)
.+....+.-+ +|...+-..+|..++.+....++.+.-+|.++|+++|..|+|....-|..+|+.|+++-..++
T Consensus 258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 4443332222 233344455677888888888889999999999999999999999999999999999866644
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.43 E-value=6.3e-13 Score=129.99 Aligned_cols=224 Identities=15% Similarity=0.217 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 198 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~ 198 (403)
.....|+.+++...+.+.++++.+.+.+|+++.+.|++|.++++++.+|++++.-|++++....||.+....+
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e------- 157 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE------- 157 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------
Confidence 4677889999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHH--HHhhcCCCccc-cccCCh
Q 015676 199 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI--TAMFKGPSSFD-ILQGHS 275 (403)
Q Consensus 199 ~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~--~~~~~g~~~~~-~~~g~~ 275 (403)
..++..|+...+.+.+..++..++.+++++++ +.+.. ++++.-+-..+++..++. ....+|+...+ ....|+
T Consensus 158 --~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~--~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~ 232 (316)
T KOG1441|consen 158 --LSFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLN--SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF 232 (316)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccC--chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccc
Confidence 12567799999999999999999999999743 22332 233333323333322221 01123321100 122344
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCCcC
Q 015676 276 KATMLLICNN---AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV 352 (403)
Q Consensus 276 ~~~~~~il~~---a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~k~ 352 (403)
...+..+++. -..++....++.+.++++-..+..+..++..+.|+++|++++|+...+|+++-+.|+++|++.+.+.
T Consensus 233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~ 312 (316)
T KOG1441|consen 233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKE 312 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333332 1123455567777888888888888888888999999999999999999999999999999865554
Q ss_pred CC
Q 015676 353 KD 354 (403)
Q Consensus 353 ~~ 354 (403)
++
T Consensus 313 ~~ 314 (316)
T KOG1441|consen 313 KK 314 (316)
T ss_pred hc
Confidence 43
No 25
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.38 E-value=7.2e-13 Score=123.95 Aligned_cols=207 Identities=12% Similarity=0.088 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCCCCC
Q 015676 128 AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT-----SALGLP 202 (403)
Q Consensus 128 ~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~-----~~~~~~ 202 (403)
+..-.++|||++|++.+.+.++..+.|.+|++|++.+|||++|+..-++..+.+.||+++..++.--|+ ...+..
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~ 187 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE 187 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence 334489999999999999999999999999999999999999999999999999999998776532111 111211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH
Q 015676 203 VATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI 282 (403)
Q Consensus 203 ~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~i 282 (403)
....|.+..+.+++..+--.+..+++-|+- + ..+...+....+.+.++++... -|. +--.+.+..|...
T Consensus 188 ~~~~gt~aai~s~lf~asvyIilR~iGk~~-h--~~msvsyf~~i~lV~s~I~~~~----ig~----~~lP~cgkdr~l~ 256 (346)
T KOG4510|consen 188 YDIPGTVAAISSVLFGASVYIILRYIGKNA-H--AIMSVSYFSLITLVVSLIGCAS----IGA----VQLPHCGKDRWLF 256 (346)
T ss_pred ccCCchHHHHHhHhhhhhHHHHHHHhhccc-c--EEEEehHHHHHHHHHHHHHHhh----ccc----eecCccccceEEE
Confidence 223466666777666665566678877763 1 1122223333444444443321 111 0011122222221
Q ss_pred ----HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 283 ----CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 283 ----l~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
+..-+|++++..-++.-.+-..+.+++..++++.++.+++|||.||++.++|+++|+.++...
T Consensus 257 ~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 257 VNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred EEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 233456677777776655555668889999999999999999999999999999999987654
No 26
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.1e-10 Score=109.43 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 015676 116 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG 195 (403)
Q Consensus 116 ~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~ 195 (403)
...++..++++|...-.-.-.+++|++.+++.++++..|+.||+.-..++|+|.+..-|.++++..+|......++.
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~--- 152 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL--- 152 (314)
T ss_pred HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc---
Confidence 34478889999988877777899999999999999999999999999999999999999999999999877654432
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc--C
Q 015676 196 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQ--G 273 (403)
Q Consensus 196 ~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~--g 273 (403)
..+..|+.+.+..+++.+...+|.|+..+.. +.+-| .+.++--++++|...+.....|+-..-.++ .
T Consensus 153 ------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~----~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~ 221 (314)
T KOG1444|consen 153 ------SFNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKF----GLVFYNNLLSLPPLLILSFITGELDALSLNFDN 221 (314)
T ss_pred ------eecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccce----eEEeehhHHHHHHHHHHHHHhcchHHHHhhccc
Confidence 1223489999999999999999999988764 22222 222333344444433322233321100011 1
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 274 H-SKATMLLICNNAAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 274 ~-~~~~~~~il~~a~gg~~vs~v~----Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
+ ....|..+....+.|..+++.. +..++.+-+.........+.+...+++|.+.++.-++|..+-+.|..+|+..
T Consensus 222 ~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 222 WSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 2 2335556666666666666544 3344444444444555677777788889999999999999999999899886
Q ss_pred CCcCCC
Q 015676 349 LSKVKD 354 (403)
Q Consensus 349 ~~k~~~ 354 (403)
..++|+
T Consensus 302 ~~~~k~ 307 (314)
T KOG1444|consen 302 TFRKKK 307 (314)
T ss_pred hhhhcc
Confidence 554444
No 27
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.31 E-value=6.6e-09 Score=99.16 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHH
Q 015676 41 VALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLL 120 (403)
Q Consensus 41 ~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 120 (403)
++......+.+|..|...|+-+.- ++..+.--+=+-...+.+.++...++.+ ..+...+..|....+
T Consensus 9 il~~l~Ay~lwG~lp~y~kll~~~-----~~~eIlahRviwS~~~~l~ll~~~r~~~--------~~~~~~~~p~~~~~~ 75 (293)
T COG2962 9 ILLALLAYLLWGLLPLYFKLLEPL-----PATEILAHRVIWSFPFMLALLFLLRQWR--------ELKQLLKQPKTLLML 75 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHhCcHHHHHH
Confidence 445555777888888777755432 2333333333333333333222222110 122233344555567
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALG 200 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~ 200 (403)
.+-+++-+.|=.+.-+|..+=..-..++=+...|++..+++.++||||+++.||+|+++..+||....... + +
T Consensus 76 ~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g----~ 148 (293)
T COG2962 76 ALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---G----S 148 (293)
T ss_pred HHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---C----C
Confidence 77777778888888889988888888999999999999999999999999999999999999998765532 1 2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc-CChhHHH
Q 015676 201 LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQ-GHSKATM 279 (403)
Q Consensus 201 ~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~-g~~~~~~ 279 (403)
.| +.. +.-|+..++++. .||.+|-..-.+.-...+.+...+.+ .++ +.-++++ +.. +.+...+
T Consensus 149 lp--wva----l~la~sf~~Ygl-~RK~~~v~a~~g~~lE~l~l~p~al~----yl~--~l~~~~~---~~~~~~~~~~~ 212 (293)
T COG2962 149 LP--WVA----LALALSFGLYGL-LRKKLKVDALTGLTLETLLLLPVALI----YLL--FLADSGQ---FLQQNANSLWL 212 (293)
T ss_pred Cc--HHH----HHHHHHHHHHHH-HHHhcCCchHHhHHHHHHHHhHHHHH----HHH--HHhcCch---hhhcCCchHHH
Confidence 22 211 222455677664 56666643222333333333222211 111 1112211 222 2222223
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 280 LLICNNAAQGIL---SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 280 ~~il~~a~gg~~---vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
+++....+..+- -+..-|...=.+-++.++++|.+--+++++++||+++...++..+.+-.|..+|...
T Consensus 213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222 122234555557889999999999999999999999999999999999999888753
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.27 E-value=3.8e-09 Score=103.19 Aligned_cols=208 Identities=16% Similarity=0.120 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHhh-hHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhhcCCCCCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQ----WEALALLLIGISVNQLRSLPEG 195 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll~q-~k~i~tAl~s~~~L~~rls~~q----w~aL~ll~~Gv~lv~~~~~~~~ 195 (403)
.+.+++....|.++|.+.+++..++...+.+ +.+++..+++.+++|||.++++ ++|+++.++|+.++...+..+.
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~ 142 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA 142 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc
Confidence 4455668999999999999999999999999 8899999999999999999999 9999999999988755432111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH---HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 015676 196 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH---QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQ 272 (403)
Q Consensus 196 ~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~---~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~ 272 (403)
+ ..+......|.++.++++++.++..+..|+. + + ++... +..-+.+.+++++.+. .+.. .+
T Consensus 143 ~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~~------~~~~----~~- 206 (290)
T TIGR00776 143 G-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLGH------ILAK----PL- 206 (290)
T ss_pred c-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHHH------hccc----ch-
Confidence 0 0000111348999999999999988888865 2 2 22222 2222333333332211 0110 01
Q ss_pred CChhHHHHHHHH---HHHHHHHHHHHHH-HhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHH----HHHHHHHHHHHH
Q 015676 273 GHSKATMLLICN---NAAQGILSSFFFK-YADTILKKYSSTVATIFTGLASAALFGHTLTMNFI----LGISIVFISMHQ 344 (403)
Q Consensus 273 g~~~~~~~~il~---~a~gg~~vs~v~K-y~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~----lG~~lVi~gv~l 344 (403)
.+...|..++. .+++..+.....+ +.+.......++..++.+.+.+++++||+.+...+ +|.++++.|+.+
T Consensus 207 -~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 207 -KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANI 285 (290)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence 12222322221 1222222222234 56666677777889999999999999999999999 999999999876
Q ss_pred h
Q 015676 345 F 345 (403)
Q Consensus 345 y 345 (403)
-
T Consensus 286 ~ 286 (290)
T TIGR00776 286 L 286 (290)
T ss_pred H
Confidence 4
No 29
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.25 E-value=5.1e-10 Score=109.53 Aligned_cols=224 Identities=14% Similarity=0.179 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 199 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~ 199 (403)
...-+.+..+.|.....|+.+.+.+..++++++.=+||-.++.++.+||++..+.+|+++.+.||+++..++..++++..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 44556678899999999999999999999999999999999999999999999999999999999999877543322111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH---HHHHHHHHHHHHhhcCCCccccccCChh
Q 015676 200 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYG---AIFNFLGIVITAMFKGPSSFDILQGHSK 276 (403)
Q Consensus 200 ~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g---~i~~~~~~l~~~~~~g~~~~~~~~g~~~ 276 (403)
. .....|.++.+++++..|.+.+..++-..++ +...-+ ++++++.| .++..|.+++-..+ +.+. |.-.+.
T Consensus 242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~e-g~rvdi-~lffGfvGLfnllllwP~l~iL~~~-~~e~---F~lP~~ 314 (416)
T KOG2765|consen 242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDE-GERVDI-QLFFGFVGLFNLLLLWPPLIILDFF-GEER---FELPSS 314 (416)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccH-HHHHHHHHHHHHHHHhHHHHHHHHh-ccCc---ccCCCC
Confidence 1 1235788999998888887777666644443 112222 23333334 22222332221222 3321 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 015676 277 ATMLLICNNAAQGILSSFFFK-----YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 350 (403)
Q Consensus 277 ~~~~~il~~a~gg~~vs~v~K-----y~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~ 350 (403)
.....++..++.|.+++=.++ ..++.+.+.+.++++.++++...++=|.++|+.+++|...|+.|-+..+.+..
T Consensus 315 ~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 315 TQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred ceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 222333344466666663332 34666777777889999999999999999999999999999999888776543
No 30
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.9e-11 Score=113.59 Aligned_cols=262 Identities=12% Similarity=0.154 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--hhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 015676 71 PVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSL--LSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM 148 (403)
Q Consensus 71 ~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~l 148 (403)
|.-..+.++++-..+|..+-....+....-..|- ++.+ ..|+.+++. +.|.+.-....+.++|.+.+-|++
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~----t~r~vlpls---vVfi~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLA----TARQVLPLS---VVFILMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHH----HHHhhcchh---heeeeehhccceehhhcceEEEEe
Confidence 3344577888888888765322211100001110 1122 234433333 334333333344899999999999
Q ss_pred HhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015676 149 LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA 228 (403)
Q Consensus 149 l~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekl 228 (403)
=+++..+|+.++++++||+|=+..-..+..+.+.|--+- .+.|+. ..+.++.|.+++++++++-|+-++|.+|.
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG---vdqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~ 207 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG---VDQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKV 207 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehheec---cccccc---cCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence 999999999999999999999988887777777765331 122221 22456679999999999999999999987
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ccccccCChhHHHHHHHHHHHHHHHHHHHH----HHhhhh
Q 015676 229 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSKATMLLICNNAAQGILSSFFF----KYADTI 302 (403)
Q Consensus 229 lK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~--~~~~~~g~~~~~~~~il~~a~gg~~vs~v~----Ky~~~i 302 (403)
+-.- ++.+|.-.+++..++.++.+|.+.+ .|+- -.++-+-+++..|.++...++.|..+.++. |..+++
T Consensus 208 l~~v-~~~iw~lt~ynnv~a~lLflpll~l----nge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSpl 282 (347)
T KOG1442|consen 208 LPPV-GDCIWRLTAYNNVNALLLFLPLLIL----NGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPL 282 (347)
T ss_pred cccc-cCeehhhHHHHHHHHHHHHHHHHHH----cchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccc
Confidence 6554 6789999999999999888877654 2331 123445557788988889999998888774 667888
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 015676 303 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 350 (403)
Q Consensus 303 ~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~ 350 (403)
+.++..+..-..-.++++.+++|..+..-|.|-.+|+.|...|+..++
T Consensus 283 ThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 283 THNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred eeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHH
Confidence 888888888888889999999999999999999999999999987543
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.02 E-value=3.1e-11 Score=112.43 Aligned_cols=212 Identities=14% Similarity=0.200 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 198 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~ 198 (403)
.|.+.|+...-.|.+.--|+||.+....+++-.-.++...+++|++||.|+...|+.++++...|++++..++...++..
T Consensus 80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a 159 (336)
T KOG2766|consen 80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA 159 (336)
T ss_pred HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence 37888888888898889999999999999999999999999999999999999999999999999998877665444332
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHH
Q 015676 199 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKAT 278 (403)
Q Consensus 199 ~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~ 278 (403)
.|. .+..|+.+++.++.+.|.+++-.|.+.|+- +.....-++.+||.+++.+-+. .+.... ---+|++..
T Consensus 160 ggs-np~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~~--~tl~w~~~i 229 (336)
T KOG2766|consen 160 GGS-NPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHHV--STLHWDSAI 229 (336)
T ss_pred CCC-CCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccce--eeEeehHHH
Confidence 222 234588999999999999999999999874 5555667888899988765532 222110 012333322
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 279 MLLICNNAAQGILSS-------FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 279 ~~~il~~a~gg~~vs-------~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
. .+.. +.+.+. .++|-.++..-+...-.+-.++.++ ..||-+.+|...+..+.+..|.++|.
T Consensus 230 ~---~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 230 F---LYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred H---HHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 1 1111 222222 2333333222222222233344443 57899999999999999999999993
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.94 E-value=3.1e-08 Score=86.72 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc----cccc-CC--h
Q 015676 207 AYLYTLIFVTVPSLASVFNEYALKSQ----YDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF----DILQ-GH--S 275 (403)
Q Consensus 207 G~ll~Lla~~~sa~a~Vy~ekllK~~----~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~----~~~~-g~--~ 275 (403)
|+++++.++++.++..++.|+.+++. .+.+.+....++...+.++.++..+. .|++... .... .. +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence 56788999999999999999999883 24455555555556666665555433 3333210 0111 11 2
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 276 KATMLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 276 ~~~~~~il~~a~----gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
...+..++..++ .......++|+.++++.+....+..+++.++|+++|||++|...++|.++.+.|+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 233333333333 334555778999999999999999999999999999999999999999999999999975
No 33
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.81 E-value=1.2e-07 Score=87.05 Aligned_cols=233 Identities=12% Similarity=0.133 Sum_probs=153.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 015676 115 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 194 (403)
Q Consensus 115 r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~ 194 (403)
++..++.+|+++-++.-+-.--+++|++.+.|.+.+++.++.+|..-+.++|.|.+.....+.++..+.-.+..+.+...
T Consensus 66 t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~ 145 (309)
T COG5070 66 TKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQA 145 (309)
T ss_pred hhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhH
Confidence 34446788888776555455557899999999999999999999999999999999999999998888777665544321
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCCccccccC
Q 015676 195 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQG 273 (403)
Q Consensus 195 ~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~-~~~~~g~~~~~~~~g 273 (403)
.+...+ .-..|++++...|+.++..-...++..|-... ......+|.-++++|.++. +..+|+.++.+.-.+
T Consensus 146 ~~~~~~--~lN~GY~Wm~~NclssaafVL~mrkri~ltNf-----~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann 218 (309)
T COG5070 146 SAFKAQ--ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNF-----KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN 218 (309)
T ss_pred HHHHhc--ccCCceEEEehhhHhHHHHHHHHHHhhccccc-----chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC
Confidence 110001 11238888888888877655555555443211 1122234555666666543 334555443334455
Q ss_pred ChhHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCC
Q 015676 274 HSKATMLLICNNAAQGILSSF----FFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 349 (403)
Q Consensus 274 ~~~~~~~~il~~a~gg~~vs~----v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~ 349 (403)
++......++..++....+++ ..+-.++.+-+...++...-.++.+.++||++.+...+..+.+=+.+..+|...+
T Consensus 219 l~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 219 LSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred CChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333333333333333 3344455555555566667888999999999999999999999999888888766
Q ss_pred CcCCC
Q 015676 350 SKVKD 354 (403)
Q Consensus 350 ~k~~~ 354 (403)
++++.
T Consensus 299 s~k~q 303 (309)
T COG5070 299 SKKQQ 303 (309)
T ss_pred HHHHh
Confidence 66544
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.79 E-value=5.1e-08 Score=82.19 Aligned_cols=130 Identities=20% Similarity=0.307 Sum_probs=100.6
Q ss_pred HHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHHHH
Q 015676 46 GDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVPAF 125 (403)
Q Consensus 46 ~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAl 125 (403)
.++++++.-+++-|.--++ -+|...-+.+.+.-+.++..+....++.+..++.. .|....+.+.++
T Consensus 10 LsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----------~k~~lflilSGl 75 (140)
T COG2510 10 LSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----------PKSWLFLILSGL 75 (140)
T ss_pred HHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----------cceehhhhHHHH
Confidence 3777788878776643232 34556667888888888888877776655443221 233334555666
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015676 126 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 189 (403)
Q Consensus 126 ly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~ 189 (403)
.-.+.-.+.|.|++.=+++...=+..+.+++++++++++||||+|..||+++++.++|++++..
T Consensus 76 a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 76 AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 6778889999999999999999999999999999999999999999999999999999987643
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.67 E-value=8.7e-07 Score=74.23 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=62.5
Q ss_pred HHHHHH-HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 015676 122 VPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL 192 (403)
Q Consensus 122 vpAlly-~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~ 192 (403)
.-+++. ..++.+.++|+++.+ +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus 39 ~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 39 LAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 335554 488999999999999 5888999999999999999999999999999999999999999977653
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.67 E-value=2.4e-07 Score=77.38 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHhccChHHHH
Q 015676 69 FSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVK 147 (403)
Q Consensus 69 ~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAll-y~l~n~L~f~al~~l~~~t~~ 147 (403)
+++...++.+.+...+ ...+.....++.. ... + .++.....+.+++ ..+.+.+.+.++++.+++..+
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 84 (126)
T PF00892_consen 17 ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNL---S-------PRQWLWLLFLGLLGTALAYLLYFYALKYISASIVS 84 (126)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCC---C-------hhhhhhhhHhhccceehHHHHHHHHHHhcchhHHH
Confidence 6677888888888876 4333333322210 011 1 1222345666666 589999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 148 MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 148 ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
++.++.|+++++++++++||+++++||+++++.++|+.++.
T Consensus 85 ~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 85 ILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998763
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.47 E-value=3e-06 Score=76.71 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh
Q 015676 124 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPV 203 (403)
Q Consensus 124 Ally~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~~~ 203 (403)
+++.+..|++...|+..++|+..+-+..+.-.++-+++++.||.|+...+.++.++...|++++.+.+... ..
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~ 132 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD 132 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence 55678899999999999999999999999999999999999999999999999999999999987654321 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCchhHHHHHHHHHHHHHHH-HHHHHHHhhcCCCccccccCChhHHHH
Q 015676 204 ATGAYLYTLIFVTVPSLASVFNEYALKSQ--YDTSIYHQNLFLYGYGAIFNF-LGIVITAMFKGPSSFDILQGHSKATML 280 (403)
Q Consensus 204 ~~~G~ll~Lla~~~sa~a~Vy~ekllK~~--~~~s~~~~n~~l~~~g~i~~~-~~~l~~~~~~g~~~~~~~~g~~~~~~~ 280 (403)
.++|....+.+++.++++-|.+++..-+. .+.+.+ .-.+.++-.++.- |.+.+. +.|.+. ++.+....|.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~F--mS~LGF~NL~~~~~~~lIL~--~T~VE~---~qsFA~~PWG 205 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHF--MSCLGFFNLCFISFPALILA--FTGVEH---LQSFAAAPWG 205 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHH--HHHHHHHHHHHHhhhHHHHH--HhchHH---HHHHhhCCch
Confidence 46788999999999999888888876543 122222 2234444444432 222221 233221 1111111122
Q ss_pred HHHHHH----HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCC
Q 015676 281 LICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 349 (403)
Q Consensus 281 ~il~~a----~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~ 349 (403)
.+...| ...+.+-+-+-...+++.+..+-.++...+.+..++-+-..+..++.|..++++|-.+--.|.
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 211111 111122222223455555556666667788888888888899999999999999977665543
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.46 E-value=0.00017 Score=67.94 Aligned_cols=203 Identities=16% Similarity=0.066 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 199 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~ 199 (403)
..+=+..-...|.++|.+++.+|.++..-+-.+-|+..|++ ..||..-.-|+++.++=++......++
T Consensus 74 ~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwvaLAvlGi~lL~p~~~~-------- 141 (292)
T COG5006 74 LLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVALAVLGIWLLLPLGQS-------- 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHHHHHHHHHhheeccCC--------
Confidence 34445555688999999999999999999999999988765 467777777888776654443322111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHH
Q 015676 200 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM 279 (403)
Q Consensus 200 ~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~ 279 (403)
..+....|..+.+.+..+|+.+-+..+|.-+.. +..--...-|.. +.++.+|.-. ..-|+ .++ ++...
T Consensus 142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~v-Aaviv~Pig~---~~ag~---~l~---~p~ll 209 (292)
T COG5006 142 VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLV-AALIVLPIGA---AQAGP---ALF---SPSLL 209 (292)
T ss_pred cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHH-HHHHHhhhhh---hhcch---hhc---ChHHH
Confidence 112345699999999999999888888876543 222222222222 2222222211 01121 111 22221
Q ss_pred HHHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 280 LLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 280 ~~il~~a~gg~~vs-----~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
..-+..++-...+- ..++....-.-+...++.+.+.++.+++++||.+|..+|+|+.+|+.+..=.+
T Consensus 210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 11122222222222 33455554455556678889999999999999999999999999999865333
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.41 E-value=1e-05 Score=70.70 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhhhhhhh-ccccC--CcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhh
Q 015676 42 ALVVGDCILVGLQPILVF-TTKVD--GGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNV 118 (403)
Q Consensus 42 l~~~~~~~~~~~~~il~~-~s~~~--g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 118 (403)
++...+.+..+.+-+++| .-+++ ++...++....+..-..-.++.........+.............+..+..+...
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 345556666677766655 22221 234567777888888887777766544333221100000000000000112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
.....+++..+.|...|..+++.+|.+++++.+.|.+.+.++++++++|+++..|+.|+++.++|+.+-
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 567778888999999999999999999999999999999999999999999999999999999998763
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.28 E-value=0.00011 Score=70.69 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHhhcCCC
Q 015676 118 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWE----ALALLLIGISVNQLRSL 192 (403)
Q Consensus 118 ~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~-q~k~i~tAl~s~~~L~~rls~~qw~----aL~ll~~Gv~lv~~~~~ 192 (403)
+.-.+-+++.++.+..+|.+++++..+...=++ .+.++.++++.+++++|--+..+|+ |++++.+|+.+...++.
T Consensus 46 ~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~ 125 (269)
T PF06800_consen 46 IVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK 125 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 345677888999999999999999877665444 6788999999999999998888877 89999999999887764
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchh----HHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 015676 193 PEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIY----HQNLFLYGYGAIFNFLGIVITAMFKGPSSF 268 (403)
Q Consensus 193 ~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~----~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~ 268 (403)
.++....+ ....-|+...+++.+...++.+..+. .+ .+.+ -|.+-|.+.+.+++. ....
T Consensus 126 ~~~~~~~~-~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPqaiGm~i~a~i~~~--------~~~~--- 188 (269)
T PF06800_consen 126 KSDKSSSK-SNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQAIGMLIGAFIFNL--------FSKK--- 188 (269)
T ss_pred cccccccc-cchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHHHHHHHHHHHHHhh--------cccc---
Confidence 33211001 11223666666666655555544333 22 2222 222222222222111 1111
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHHHH
Q 015676 269 DILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM----NFILGISIVFISMH 343 (403)
Q Consensus 269 ~~~~g~~~~~~~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~----~~~lG~~lVi~gv~ 343 (403)
.+++..++...+.=+.-+++.+..-+..+..+.-+.-..+-++++++.+.++++++|.=+. ..++|.++++.|..
T Consensus 189 ~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 189 PFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred cccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 1233323322222122244444333333322222222223367899999999999998664 46788888888754
No 41
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.13 E-value=3.5e-05 Score=64.16 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHH-----HHHHHHHHHHHH
Q 015676 217 VPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM-----LLICNNAAQGIL 291 (403)
Q Consensus 217 ~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~-----~~il~~a~gg~~ 291 (403)
++|...++.++..++. ++...+.+....+.+ .++.... .+... ....+...+ ..++..+++..+
T Consensus 2 ~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 5678889999988873 344444444444443 2222221 11110 112222211 122223455566
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 292 SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 292 vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
....+|+.+....+....++++++.++++++++|+++...++|..+++.|+++.+
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888899999999999999999999999999999999987653
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.13 E-value=2.9e-05 Score=65.03 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 124 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 124 Ally~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
-++|.+...+.-.+++++|.+....+.++.++++++++++++|||++++||+++.+..+|++++.
T Consensus 44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999999998874
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.11 E-value=0.00018 Score=70.71 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 125 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 125 lly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
+++.+.+.+.+.|+.+.|++..+=+..+.+++.++++.++||||+++++|++.++.++|.+++...
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 467889999999999999999999999999999999999999999999999999999999876543
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.06 E-value=7.7e-05 Score=74.87 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcc-ccCCc--ccchhHHHHHHHHHHHHHHHHHHHH-HHhhccccccccc--hhHHHHHH
Q 015676 39 LNVALVVGDCILVGLQPILVFTT-KVDGG--FKFSPVSVNFLTEAVKVFFAIVMLL-LQARHKKVGEKSL--LSFSTIAQ 112 (403)
Q Consensus 39 l~~l~~~~~~~~~~~~~il~~~s-~~~g~--~~~~~~~~V~l~E~~Kl~i~~~~l~-~~~~~~~~~~~~~--~~~~~~~~ 112 (403)
..+++...+.+.++.+.++.|.. ++.+. .++++...-...-+...++++.+.. .+..... ..+.. .....+ .
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~-~~~~~~~~~~~~~-~ 271 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWV-PVWTNYTANMTNY-T 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHhhhccccc-c
Confidence 35666677788888888877632 22111 1345544433334445544444433 2221000 00000 000000 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 113 AARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 113 ~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
...-......-++.|.++|.+.|+++++++|.++++...+||+++.++++++++|+++..|++|.++.++|+.+.+
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 0000112344577899999999999999999999999999999999999999999999999999999999998764
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.05 E-value=0.00018 Score=68.40 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhH
Q 015676 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVL 119 (403)
Q Consensus 40 ~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 119 (403)
..++....++.|+...++.|....+ ++.++.......-+.-.++........++.. +. +. ++...
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~-~~-------~~~~~ 193 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFAWFLGPNP-----QA-LS-------LQWGA 193 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-----Cc-ch-------HHHHH
Confidence 4455666777888887777644322 1111212222233343333333332222111 10 11 11122
Q ss_pred HHHHHHH-HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015676 120 LAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGI 184 (403)
Q Consensus 120 ~~vpAll-y~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv 184 (403)
....+++ ..+...+.+.++++.++++..++..+.|+++++++++++||++++.||.+..+.++|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3444444 5678888999999999999999999999999999999999999999999999999986
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.04 E-value=9.1e-05 Score=72.47 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHH-----h
Q 015676 39 LNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQ-----A 113 (403)
Q Consensus 39 l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~ 113 (403)
...++...+++.++.+.++.|....+ +++++.+..+.+-....+..+........... . ..++.+ .
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~---~----~~~~~~~~~~~~ 215 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPPF---L----PHGFMQAISGVN 215 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchHH---H----HHHHHHhhcccC
Confidence 35556667778888887776532221 13556555555555555444443332111000 0 000100 0
Q ss_pred hhhhhH-HHHHHH-HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 114 ARNNVL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 114 ~r~~~~-~~vpAl-ly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
....+. ..+.++ .|...|.+.|.+++++++.++++...++|++++++++++++|+++..|+++.++.++|+.+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 216 VTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 001111 233443 577778888899999999999999999999999999999999999999999999999999887543
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.92 E-value=0.00041 Score=69.88 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 129 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 129 l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
+...+.++++++++|+...+...+.|++++++++++|+|++++.|+++.++.+.|+.+++.+.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 455677889999999999999999999999999999999999999999999999999987654
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.90 E-value=0.00017 Score=61.16 Aligned_cols=127 Identities=15% Similarity=0.210 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHH
Q 015676 208 YLYTLIFVTVPSLASVFNEYALKSQYDTSI--YHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN 285 (403)
Q Consensus 208 ~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~--~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il~~ 285 (403)
..+.+++++++|+..++.+--+++. |++. .+|+.-+. ++.....+ ..|+.+. -.+.+...|..+...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~----~~l~~v~~----~~g~~~~--~~~~~~k~~lflilS 73 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVIL----IFLLIVLL----VTGNWQA--GGEIGPKSWLFLILS 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHH----HHHHHHHH----hcCceec--ccccCcceehhhhHH
Confidence 4677899999999887665556653 2221 23433322 21111111 2332110 011233344443333
Q ss_pred HH----HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 286 AA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 286 a~----gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
++ +-++-.+.+|..+.-........+++++.++|++++||.+|...++|..++.+|+.+.
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 32 3334444455555555556677899999999999999999999999999999997654
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.79 E-value=0.00092 Score=65.31 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 124 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 124 Ally~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
++.-.+...+.+.++++++++..+++..+.|++.++++++++||+++..||++.++.+.|+.+....
T Consensus 222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 3444567888899999999999999999999999999999999999999999999999999887543
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.75 E-value=0.001 Score=65.21 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHH--HhhccccccccchhHHHHH-Hhhhh
Q 015676 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLL--QARHKKVGEKSLLSFSTIA-QAARN 116 (403)
Q Consensus 40 ~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~r~ 116 (403)
.+.++..+.++.+.++..++.... +|+-++...++.+.++.+.+....... .+.... ...+. +....
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~--------~~~f~~~~p~~ 224 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS--------AIRFISAHPSV 224 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH--------HHHHHHHhHHH
Confidence 555666666677777766652221 122345688899999998888776555 221110 01111 11222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 117 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 117 ~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
......-++..++.....+.-.+..++.+..++..++-+.+.+++.++.++++++.||.|+++.+.|..+-...
T Consensus 225 ~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 225 LLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 23344455555565666677789999999999999999999999999999999999999999999999886554
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.74 E-value=0.0023 Score=55.11 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHH
Q 015676 207 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 286 (403)
Q Consensus 207 G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il~~a 286 (403)
|++++++++++.+.+-+..++-+++..+.+..... + ..+. .. .. ...+.+..+...+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~---~~~~----~~-----~~---------p~~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--I---AALL----AF-----GL---------ALRAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--H---HHHH----HH-----hc---------cHHHHHHHHHHHH
Confidence 67888888888888888888777664222211110 0 0000 00 00 0012333333334
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHHHHHhcCCCCc
Q 015676 287 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAA--LFGHTLTMNFILGISIVFISMHQFFSPLSK 351 (403)
Q Consensus 287 ~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~--lfge~lt~~~~lG~~lVi~gv~ly~~~~~k 351 (403)
+.-.+-.+++|..+........+...++..+.++. +|||++|...++|.++|+.|+++.+...+|
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 44445556667766555554445555666667764 899999999999999999999998764443
No 52
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.69 E-value=0.0023 Score=62.45 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 127 YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 127 y~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
-.++..+.++++++++++..+++..+.|+++++++++++||+++..||++.++.++|++.....
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3477778899999999999999999999999999999999999999999999999999887554
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.62 E-value=0.0023 Score=62.37 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 127 YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 127 y~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
-.+...+.+++++++++++..++..+.|+++++++++++||+++..||++.++.+.|+.+.+..
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999987654
No 54
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.56 E-value=0.0024 Score=61.83 Aligned_cols=129 Identities=10% Similarity=-0.017 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHH----
Q 015676 208 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLIC---- 283 (403)
Q Consensus 208 ~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il---- 283 (403)
+++.++++++.+...+..|+..+++ +.. + .+....+.++..|... .+... ..+...+...|..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGL----WYLAQ--VGWSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHH----Hhccc--CCCCCcchhhHHHHHHHHH
Confidence 4677888999999999888776653 222 1 2222233333333222 11100 001111111222222
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 284 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 284 ~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
..+....+....+++.+.-......+..++++.+++++++||+++...++|.++++.|+.+-..
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 2333344555567787777777777889999999999999999999999999999999876543
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.53 E-value=0.0048 Score=60.33 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 128 AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 128 ~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
.+...+.+.+++++++.+..++..+.|++.+++++++++|+++..||++.++.++|+.+...+.
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3566778889999999999999999999999999999999999999999999999998876543
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.52 E-value=0.00089 Score=56.83 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
..+.-++|.+...+...+++++|.+...-+ ...-.+.+++.+++++||+++..||+++.++++|++.+...+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 456677899999999999999999777655 579999999999999999999999999999999999886544
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.49 E-value=0.00083 Score=57.82 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 124 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKI--IMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 124 Ally~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~--~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
-++|.+...+..++++.+|++...-+.+..+..+++.++. ++||+++..||+++++.++|+.++..++
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3468899999999999999999998888888888888885 8999999999999999999999987543
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.46 E-value=0.0022 Score=62.66 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhc
Q 015676 119 LLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQL 189 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~-~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw----~aL~ll~~Gv~lv~~ 189 (403)
...+.+++..+.+.+.+.+.+ ++++++..++.+..|+..++++++++||+.+++|+ ++.++...|+.++..
T Consensus 213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 445577778899999999999 99999999999999999999999999999999999 999999999988753
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.45 E-value=0.0014 Score=54.34 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 189 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~-~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~ 189 (403)
..+...+|.+...+...+++.+|.++. .+-...-.+.+++.+++++||++++.|++++.+..+|++....
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 345567899999999999999998765 5556689999999999999999999999999999999998754
No 60
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.0015 Score=53.90 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 189 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~-~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~ 189 (403)
...+..+.|.+...+.-.+++++|.++. .+-...-++.|++.+++++||+++..|++++.++.+|++....
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3455667788899999999999998665 6677789999999999999999999999999999999988754
No 61
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.41 E-value=0.0016 Score=54.54 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
...-++|.+...+...+++.+|.++..-+ .....+.+++.+++++||+++..|++++.+.++|++.+...
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44566788999999999999999777555 56899999999999999999999999999999999998654
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.34 E-value=0.002 Score=53.71 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 120 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 120 ~~vpAlly~l~n~L~f~al~~l~~~t~-~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
..+.-.+|.+...+.-.+++++|.++. .+-...-.+.+++.+++++||++++.||+++.+.+.|++...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455567788999999999999998665 566678999999999999999999999999999999998763
No 63
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.11 E-value=0.017 Score=56.50 Aligned_cols=134 Identities=9% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccCChhHHH--HHH
Q 015676 206 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FDILQGHSKATM--LLI 282 (403)
Q Consensus 206 ~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~-~~~~~g~~~~~~--~~i 282 (403)
.|+++++++++++|..+++.+.. .+ .++......=.+++.++.++.+.. .++... ...++......+ ...
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMSI---CRQWSYLKTLIQTPQKIFMLAVSA 80 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHcCHHHHHHHHHHH
Confidence 47889999999999999999653 32 344333333334444333332221 111000 000111111111 111
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 283 CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 283 l~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
+..+....+..+.+++.+....+...+..|+++.++++++++|+++...++|.++.+.|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 2233334455566678787788888889999999999999999999999999999999987654
No 64
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.06 E-value=0.029 Score=53.40 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccCChhH-HHHHHH-
Q 015676 207 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FDILQGHSKA-TMLLIC- 283 (403)
Q Consensus 207 G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~-~~~~~g~~~~-~~~~il- 283 (403)
|.++++++++++|..++..|. ..+ .++......=.+++.++.++.... ...... ..-++..+.. .+..+.
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTL---FRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHhCcccchHHHHHHH
Confidence 678889999999999998886 332 344333333233343332222111 111000 0001111111 111111
Q ss_pred ---HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 284 ---NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 284 ---~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
..+....+....++|.+........+..|++++++++++++|+++...++|..+.+.|+.+-
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12333344455577777777777888899999999999999999999999999999997643
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.96 E-value=0.0073 Score=50.52 Aligned_cols=60 Identities=8% Similarity=0.116 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 286 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
++...+.+.++|+.+--......+++++++.++|+++|||++|...++|.++++.|+.+-
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 334455566777766444444455889999999999999999999999999999998754
No 66
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.95 E-value=0.015 Score=56.14 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHH
Q 015676 43 LVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAV 122 (403)
Q Consensus 43 ~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v 122 (403)
.+..+.+.|..+..+.++.+.+ +.+ .++-|.+.++++..++....+ ++... |..++=.+
T Consensus 142 ~Ll~stigy~~Y~~~~~~~~~~------~~~-~~lPqaiGm~i~a~i~~~~~~------~~~~~--------k~~~~nil 200 (269)
T PF06800_consen 142 ALLISTIGYWIYSVIPKAFHVS------GWS-AFLPQAIGMLIGAFIFNLFSK------KPFFE--------KKSWKNIL 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------hhH-hHHHHHHHHHHHHHHHhhccc------ccccc--------cchHHhhH
Confidence 3444566777777777764433 323 366778888887665543221 11111 12334578
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015676 123 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 178 (403)
Q Consensus 123 pAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ 178 (403)
+++++.+.|.+++++.+..-.++.-.+.|+.++...+-+.++|||+=+++|+....
T Consensus 201 ~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 201 TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999998988875443
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.94 E-value=0.012 Score=49.96 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 286 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
++.-.+.+.++|+.+ ++.-...+.+.++.+.++++++|||++|+..++|+.+++.|+..-+..
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 444455566677654 333344456788999999999999999999999999999999876543
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.81 E-value=0.018 Score=48.17 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 289 GILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 289 g~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
-.+.+..+|+.+ ++.-+.-+.+..+.++++++++|||++|+..++|+++++.|+..-+.
T Consensus 44 f~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344456666644 22333334568899999999999999999999999999999987654
No 69
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.62 E-value=0.005 Score=51.62 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 117 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 117 ~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
+++|.+|=++|.....+.|+.+...|.+...-+ +++.-++|++.++++.+|..+++.|+++++.++|+.+.
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 347899999999999999999999999877655 68999999999999989999999999999999998753
No 70
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.61 E-value=0.034 Score=46.31 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 287 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 287 ~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
.......+..++.+. .......+.++++.+++.++|+|+++...++|.+++++|+.+-..
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 334455566788875 455666789999999999999999999999999999999876554
No 71
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0068 Score=57.35 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015676 129 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS 185 (403)
Q Consensus 129 l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~ 185 (403)
+-..|-.++++.+|..+|.++.++.|.+-|+..+++|+|++|..||+++++...+.+
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999999999999999999999999999888765
No 72
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.58 E-value=0.0045 Score=61.09 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015676 118 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 118 ~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~ 188 (403)
+.+.+-++++.++|...|..+.+++|-|+++....|-+.....+++++++++++.|..+.++.++|+.+-.
T Consensus 236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 34455568999999999999999999999999999999999999999999999999999999999998854
No 73
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.52 E-value=0.16 Score=48.27 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=62.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 120 LAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 120 ~~vpAlly~-l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
....+++-. +...+.+.+++..+++....+..+.|++..++++++++|+.+..||++..+.+.|+.+...+
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 344444444 67888999999999999999999999999999999999999999999999999999988654
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.013 Score=57.23 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 125 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 125 lly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
+.+.+.+.+.|.|+.+-|++...=+..+.++..|+++.++||||++..-.+|.++.++|-.++....
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 4577899999999999999999999999999999999999999999999999999999988766544
No 75
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.46 E-value=0.012 Score=47.51 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015676 122 VPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 180 (403)
Q Consensus 122 vpAlly~l~n~L~f~al~~l~~~t~-~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll 180 (403)
..-.+|.+...+.-.+++++|.++. .+...+..+.+++.+.+++||++|..||.++.+.
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3344789999999999999999777 5556799999999999999999999999999863
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.23 E-value=0.23 Score=41.43 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 286 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
++.-.+.+..+|+.+ ++.-..-+.+..+.+.+.++++|||++|+..++|+++++.|+..-
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344455666677654 334445556778999999999999999999999999999998764
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.04 E-value=0.068 Score=52.62 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHH
Q 015676 204 ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLIC 283 (403)
Q Consensus 204 ~~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il 283 (403)
..+|.++.+.++++.+.+.++.|+-.++.++.+.... -. + .. .+. ++.+|.-++
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-~~----~-----~~--------------~l~--~~~W~~G~~ 58 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-SG----G-----RS--------------YLR--RPLWWIGLL 58 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ch----h-----hH--------------HHh--hHHHHHHHH
Confidence 3568899999999999999888887665422111100 00 0 00 001 122222233
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 284 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 284 ~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
..++|.+.-...+.++...+-....+++++++.+++.++++|+++...++|.++++.|+.+-
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 33445544445566688777777788999999999999999999999999999999997644
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.085 Score=43.64 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 289 GILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 289 g~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
-.+.+..+|+.+ .+.-+.-+.+.++.+++.++++|||+++...++|..+++.|+..-+.
T Consensus 44 f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 44 FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 345566677754 34445556678899999999999999999999999999999876543
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.92 E-value=0.084 Score=43.75 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 286 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
++.-.+.+..+|..+ ++.-+.-+.+.++.+.+.++++|||++|+..++|+.+++.|+..-+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 333445556666544 3444555667889999999999999999999999999999987653
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.81 E-value=0.12 Score=49.67 Aligned_cols=67 Identities=19% Similarity=0.091 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHH-HhCCCc-----hHHHHHHHHHHHHHHHHhcCCCCcC
Q 015676 286 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAA-LFGHTL-----TMNFILGISIVFISMHQFFSPLSKV 352 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~-lfge~l-----t~~~~lG~~lVi~gv~ly~~~~~k~ 352 (403)
+.|++++-.++|..+ ++--.+..+.+.+..+..|-+ +||.+. .+.-.+|++++++|..+|...+.+.
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 445555555555543 222234444555666666644 676543 4466899999999999987654444
No 81
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.54 E-value=0.21 Score=49.89 Aligned_cols=139 Identities=16% Similarity=0.059 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccchhHHHHHHhh
Q 015676 36 TRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKK-VGEKSLLSFSTIAQAA 114 (403)
Q Consensus 36 ~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 114 (403)
...+.-+++...++.|+.+-++.++.-.+ ++....+-+--+..++++.+.+..-.+.+- .-+++ .
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~----~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~---~------- 230 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKK----APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWT---S------- 230 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC---h-------
Confidence 44666778888999999998887643222 234455556666677776554332222111 11111 1
Q ss_pred hhhhHHHHHHHHHHHH----HHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 115 RNNVLLAVPAFLYAIN----NYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 115 r~~~~~~vpAlly~l~----n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
....+-+.|++. ..+.-+.++..+|+.+++-..+..+...++..++.|++.++..++|.++..+|+++....
T Consensus 231 ----~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 231 ----QVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence 111122223332 233345677788888888888899999999999999999999999999999999987665
Q ss_pred CC
Q 015676 191 SL 192 (403)
Q Consensus 191 ~~ 192 (403)
+.
T Consensus 307 ~~ 308 (334)
T PF06027_consen 307 ES 308 (334)
T ss_pred CC
Confidence 43
No 82
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.44 E-value=3.3 Score=41.60 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCC---C----HHHHHHHHHHHHHHHHhhc-
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRF---S----IIQWEALALLLIGISVNQL- 189 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rl---s----~~qw~aL~ll~~Gv~lv~~- 189 (403)
.-.+-+++..+.|.+++.+.+++..+...-+ ..+..+.++++..++++|-- + ..-.+++++.++|+++...
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788999999999999988766544 46888999999999988532 3 3456778888899999877
Q ss_pred ---CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 015676 190 ---RSLPEGTSALGLPVATGAYLYTLIFVTVPSLAS 222 (403)
Q Consensus 190 ---~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~ 222 (403)
++...+....+.....-|+.+.+++.+.+++.+
T Consensus 155 g~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 155 GQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 332111000011112347777787777777666
No 83
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.15 E-value=0.026 Score=52.59 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS 185 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~ 185 (403)
....+.++.+++..+..+.+++.|+.+..+...+.++++++++.++++++++..||++..+.+.|+.
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 3455567778888899999999999999999999999999999999999999999999999998864
No 84
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.29 Score=47.76 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhh
Q 015676 35 KTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAA 114 (403)
Q Consensus 35 k~~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (403)
-...+.+.-+.-+.+....|.-+-+ +|.-++...++-.++.-.+.+..-++-++. .++. -.|...=
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-----~~~a---v~F~~~h 237 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGH-----LLPA---VSFIKEH 237 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCC-----CchH---HHHHHcC
Confidence 3344555555555566666765544 334556666777777777777665443321 1111 1111111
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015676 115 RN-NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 186 (403)
Q Consensus 115 r~-~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~l 186 (403)
++ .+-+.+-+.+-++..+..|+-++...+-++..+.-++=+++.+++.+..+++++..||.++.+.+.|+..
T Consensus 238 p~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 238 PDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 11 2235666777788888889999999999999999999999999999999999999999999999988865
No 85
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.85 E-value=1.2 Score=43.29 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=85.4
Q ss_pred HHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHH-HHHHHHHHHHHhhccccccccchhHHHHHH--hhhhhhHHHH
Q 015676 46 GDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVK-VFFAIVMLLLQARHKKVGEKSLLSFSTIAQ--AARNNVLLAV 122 (403)
Q Consensus 46 ~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~K-l~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~v 122 (403)
..|+.|+.++.+.|..+.| +.+- +.-|.+= +..|+..+........ +.+ ..+.++.+..
T Consensus 155 ~la~sf~~Ygl~RK~~~v~------a~~g-~~lE~l~l~p~al~yl~~l~~~~~-----------~~~~~~~~~~~LLv~ 216 (293)
T COG2962 155 ALALSFGLYGLLRKKLKVD------ALTG-LTLETLLLLPVALIYLLFLADSGQ-----------FLQQNANSLWLLLVL 216 (293)
T ss_pred HHHHHHHHHHHHHHhcCCc------hHHh-HHHHHHHHhHHHHHHHHHHhcCch-----------hhhcCCchHHHHHHH
Confidence 4566777777777766544 3232 4455554 4445554443321110 000 1222333444
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015676 123 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 190 (403)
Q Consensus 123 pAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~ 190 (403)
-+..-++--.+.-.|-+.+|.++.-++.+..|...-+++.+++||+++.-|+.+-+.+.+|+++...+
T Consensus 217 aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 217 AGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666667888899999999999999999999999999999999999999999999887554
No 86
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.70 E-value=0.26 Score=47.03 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCCcC
Q 015676 285 NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV 352 (403)
Q Consensus 285 ~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~k~ 352 (403)
-++.+.+....+++.|+.+-.......+++|+++++++++.+++..+|++..+.+.|+.+........
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 35566777778899998888888889999999999999999999999999999999998877654443
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.38 E-value=0.19 Score=40.52 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015676 290 ILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 338 (403)
Q Consensus 290 ~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lV 338 (403)
.+.+..+|+.+ ++.-...+.+.++.+.+.++++|||++|...++|+.+|
T Consensus 44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 45556666655 23334445678899999999999999999999999875
No 88
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.97 E-value=3.8 Score=35.52 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHHHH
Q 015676 209 LYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ 288 (403)
Q Consensus 209 ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il~~a~g 288 (403)
++.+++..+.++++..+-++-|.- .+++.-...-+..|.+......+. .+++ ....+.+.+|+.|.-=+..++.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence 445556666777788888877664 346555555555565554443332 2322 1122334456555422222222
Q ss_pred HHHHHHHHHHhhhhH-HHHHhhHHHHHHHHHHHH-Hh---CCCchHHHHHHHHHHHHHHHH
Q 015676 289 GILSSFFFKYADTIL-KKYSSTVATIFTGLASAA-LF---GHTLTMNFILGISIVFISMHQ 344 (403)
Q Consensus 289 g~~vs~v~Ky~~~i~-k~~a~~~~iv~t~lls~~-lf---ge~lt~~~~lG~~lVi~gv~l 344 (403)
-....+.++..+... ......-+++.+.++..+ +| .++++...++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 222223333333221 222223345556666655 34 468999999999999999864
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.78 E-value=0.17 Score=42.52 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 015676 280 LLICNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 344 (403)
Q Consensus 280 ~~il~~a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~l 344 (403)
+..+.+..|.+.-.+.+..+| ++....+++++-++|.+.++++.++..+...++|+++|+.|+.+
T Consensus 46 ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 46 IPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 344444445555445565565 34445667899999999999888888899999999999999764
No 90
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.73 E-value=1.3 Score=44.53 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH--
Q 015676 205 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI-- 282 (403)
Q Consensus 205 ~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~i-- 282 (403)
..|++..+++++++|.-.+=++| .|+- .|. ++|. ..+++..++..+......-+...+.++..+...+...
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~wE-~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW----SWE-TMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC----chh-HHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 45888889999988876665555 3432 222 2243 3333222211111011111111122333444333322
Q ss_pred --HHHHHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHHHHHhcC
Q 015676 283 --CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTL-------TMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 283 --l~~a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfge~l-------t~~~~lG~~lVi~gv~ly~~ 347 (403)
+.-++|++.....+|+.+ +..-..++.++.+++++++.+++||-. ....++|.+++++|+.+-..
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 233678888888899876 445556777788999999999998643 23568899999999887665
No 91
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.00 E-value=0.19 Score=47.31 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 118 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 118 ~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
+-+...|+.-++...+.|....+..|-+-+++..++-+||.+.++++++..++.+||++-++.+.|...=
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 3455667777888899999999999999999999999999999999999999999999999999988653
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=92.28 E-value=0.031 Score=52.80 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHH
Q 015676 42 ALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLA 121 (403)
Q Consensus 42 l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 121 (403)
+....-++.+++.|... .|..|+ +|..+ .=+-+--+++++.+++... ++. +++. ...-.
T Consensus 5 liaL~P~l~WGsip~v~--~k~GG~-p~qQ~---lGtT~GALifaiiv~~~~~-----p~~---T~~~-------~iv~~ 63 (288)
T COG4975 5 LIALLPALGWGSIPLVA--NKFGGK-PYQQT---LGTTLGALIFAIIVFLFVS-----PEL---TLTI-------FIVGF 63 (288)
T ss_pred HHHHHHHHHhcccceee--eecCCC-hhHhh---hhccHHHHHHHHHHheeec-----Ccc---chhh-------HHHHH
Confidence 44445667788887654 344444 33332 2333444666666554421 111 1222 22345
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhcCCC
Q 015676 122 VPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQLRSL 192 (403)
Q Consensus 122 vpAlly~l~n~L~f~al~~l~~~t~~ll~-q~k~i~tAl~s~~~L~~rls~~qw----~aL~ll~~Gv~lv~~~~~ 192 (403)
+.+++.......+|-|.+++..+...=++ .+..+-+.+++++.++|--+..|. .|++++.+|+.+...++.
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 66777888889999999999887775444 578899999999999998888775 688999999988777653
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.66 E-value=22 Score=31.39 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHH
Q 015676 207 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 286 (403)
Q Consensus 207 G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il~~a 286 (403)
..+..+++..+..+++..+-++.|.- .++..-...-+..|++..+...+ +.++..........+||.|.-= .
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~GG---~ 77 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIGG---L 77 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHcc---c
Confidence 34555666666777777888876654 23433323323334433222222 2333322222234456655431 2
Q ss_pred HHHHHHHHHHH----HhhhhHHHHHhhHHHHHHHHHHHH-HhC---CCchHHHHHHHHHHHHHHHHhcC
Q 015676 287 AQGILSSFFFK----YADTILKKYSSTVATIFTGLASAA-LFG---HTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 287 ~gg~~vs~v~K----y~~~i~k~~a~~~~iv~t~lls~~-lfg---e~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
+|.+++..-+. .....+.....+-+++.+.++.-+ +|| .+++..-++|++++++|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 23333332222 222223333334455556666555 333 57899999999999999776544
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.46 E-value=0.51 Score=46.38 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 015676 276 KATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 344 (403)
Q Consensus 276 ~~~~~~il~~a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~l 344 (403)
+..|.-++..++|-+.-...+-++..++.+...+++++.+++++..++.|.+++.-.+|.++.+.|..+
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence 455666778888888777777789999999999999999999999999999999999999999998653
No 95
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=82.55 E-value=1.2 Score=42.84 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=40.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 015676 299 ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 350 (403)
Q Consensus 299 ~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~ 350 (403)
+|+++ .+..++++++++++.+++|+.|..-.+|..+-+.|+.+-.+|+-
T Consensus 124 aDA~v---ItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 124 ADAVV---ITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hheEE---EEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 45554 34467999999999999999999999999999999887776643
No 96
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=80.14 E-value=8.8 Score=37.30 Aligned_cols=149 Identities=21% Similarity=0.206 Sum_probs=89.4
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhccc-cCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015676 24 AYDRHRHQVSSKTRFLNVALVVGDCILVGLQPILVFTTK-VDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEK 102 (403)
Q Consensus 24 ~~~~~~~~~~~k~~~l~~l~~~~~~~~~~~~~il~~~s~-~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~ 102 (403)
+-|.+....+.+|+.+.+-++.-+.+.-+.+++.++-.+ .-|+ ++-+..|.+-++-+-.-+++ ++
T Consensus 149 ~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK---h~~EalFytH~LsLP~Flf~----~~------- 214 (330)
T KOG1583|consen 149 GLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK---HWKEALFYTHFLSLPLFLFM----GD------- 214 (330)
T ss_pred ccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHhccchHHHh----cc-------
Confidence 444444456667777666666666666666777765222 2233 23466777777765443332 11
Q ss_pred cchhHHHHHHhhhh------hhHHHHHHH-HHHHHHHHHHH-HHhc-------cChHHHHHHhhhHHHHHHHHHHHHhcC
Q 015676 103 SLLSFSTIAQAARN------NVLLAVPAF-LYAINNYLKFI-MQLY-------FNPATVKMLSNLKVFVIALLLKIIMKR 167 (403)
Q Consensus 103 ~~~~~~~~~~~~r~------~~~~~vpAl-ly~l~n~L~f~-al~~-------l~~~t~~ll~q~k~i~tAl~s~~~L~~ 167 (403)
+. ..++....+. ..-..+|.. .|.+.|.+..+ ..+. .++-|.++...++=.+.-++|...++-
T Consensus 215 di--v~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~N 292 (330)
T KOG1583|consen 215 DI--VSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFEN 292 (330)
T ss_pred hH--HHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecC
Confidence 00 0111111111 112336666 47777776544 3332 344455666667778888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 015676 168 RFSIIQWEALALLLIGISVNQ 188 (403)
Q Consensus 168 rls~~qw~aL~ll~~Gv~lv~ 188 (403)
.++++.|++..+.+.|..+..
T Consensus 293 pft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 293 PFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 97
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=79.98 E-value=4.6 Score=33.36 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015676 117 NVLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 186 (403)
Q Consensus 117 ~~~~~vpAlly~l~n~L~f~al~~l~~~t~-~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~l 186 (403)
++.|.+|=+++-....+.|.-+++.|.+.. -+.+++...+|+++...+-.|.....-.++..+..+|+.+
T Consensus 52 ~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 52 NWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 467999999999999999999999887655 5677889999999998875555556666677777777644
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=77.92 E-value=33 Score=34.35 Aligned_cols=135 Identities=12% Similarity=0.128 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH--HHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH
Q 015676 205 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLY--GYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI 282 (403)
Q Consensus 205 ~~G~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~--~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~i 282 (403)
..|+++..++++++|...+=.+|+ |+ --..++|+. +++.++ .|.+ ... ..-|...+.+...+..++...
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~-----WsWEs~Wlv~gi~swli-~P~~-~a~-l~ip~~~~i~~~~~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KG-----WSWESYWLVQGIFSWLI-VPWL-WAL-LAIPDFFSIYSATPASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CC-----ccHHHHHHHHHHHHHHH-HHHH-HHH-HhCCcHHHHHHhCChhHHHHH
Confidence 458888888888887666555554 22 112344432 222222 1221 111 122211123333443332221
Q ss_pred ----HHHHHHHHHHHHHHHHhh-hhHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHHHHHhcCC
Q 015676 283 ----CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFG-------HTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 283 ----l~~a~gg~~vs~v~Ky~~-~i~k~~a~~~~iv~t~lls~~lfg-------e~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
+.-++||+.-+..+||.+ ++--+.+.-+..++.+++--++.| .+-....++|.+++++|+.+....
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 234789999999999986 333344444445555555444433 233457799999999999887654
No 99
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=76.63 E-value=1.4 Score=41.86 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHH
Q 015676 76 FLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVF 155 (403)
Q Consensus 76 ~l~E~~Kl~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i 155 (403)
++=..+.++++.+.+-..+. +++. -+..++-.+|++..+..|..++++.+....+|.--++|+..+
T Consensus 182 iLPqAiGMv~~ali~~~~~~-----~~~~---------~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi 247 (288)
T COG4975 182 ILPQAIGMVIGALILGFFKM-----EKRF---------NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI 247 (288)
T ss_pred hhHHHHHHHHHHHHHhhccc-----ccch---------HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence 45566777777766544332 1111 122345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHH
Q 015676 156 VIALLLKIIMKRRFSIIQWEALA 178 (403)
Q Consensus 156 ~tAl~s~~~L~~rls~~qw~aL~ 178 (403)
...+=..++||||=+++||..+.
T Consensus 248 isTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 248 ISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred eeecceEEEEeccCchhhhhhhh
Confidence 99999999999999999987554
No 100
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=76.09 E-value=4.8 Score=33.20 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 015676 303 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 344 (403)
Q Consensus 303 ~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~l 344 (403)
+|..-..++..+=+.++++++||+++++++.|.++++++++.
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 344444455555566788899999999999999999999875
No 101
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=74.91 E-value=16 Score=34.50 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 119 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 119 ~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
.+.+.+++-..-.++.=+..+-++.++++++..+.-...|+-..+++++..++....+++++++..++-
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 466777777777777777888899999999999999999999999999999998888888887765543
No 102
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=73.99 E-value=58 Score=28.12 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHhhh-HHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHHHH
Q 015676 123 PAFLYAINNYLKFIMQLYFNPATVKMLSNL-KVFVIALLLKI----IMKRRFSIIQWEALALLLIGISV 186 (403)
Q Consensus 123 pAlly~l~n~L~f~al~~l~~~t~~ll~q~-k~i~tAl~s~~----~L~~rls~~qw~aL~ll~~Gv~l 186 (403)
.+++-+..-.+..+....+.++...++.=+ +.+...++-.+ .-++++++.|.++++++.+|+.+
T Consensus 70 GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 70 GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 455555555566667788888777766654 45555555554 35799999999999999999863
No 103
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.93 E-value=60 Score=26.57 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 303 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 303 ~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
.|..-.-++..+=..+|++.++|++.+..+.|.+++.+|+++-.
T Consensus 71 LK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 71 LKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 44444434445556689999999999999999999999987643
No 104
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=65.28 E-value=15 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHhccChHHHHHHhh-hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015676 136 IMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 186 (403)
Q Consensus 136 ~al~~l~~~t~~ll~q-~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~l 186 (403)
+|.+..+++--.++.- .....-++|+.+++||++++.+..|-+++..++..
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3444444444444432 23345678999999999999999999988777643
No 105
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=64.33 E-value=2.2 Score=41.26 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHhccChHHHHHHhhhHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhHHHHHH
Q 015676 134 KFIMQLYFNPATVKMLSNLKVFVIALLLKII-MKRR-FSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYT 211 (403)
Q Consensus 134 ~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~-L~~r-ls~~qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~ 211 (403)
.|+-++-++-+...+++++.++.+.|+-.++ +||| +-+.-.+|++++++-..+..+-... +. .-+.|+++.
T Consensus 40 ~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLt------GQ-~LF~Gi~~l 112 (381)
T PF05297_consen 40 FFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT------GQ-TLFVGIVIL 112 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh------cc-HHHHHHHHH
Confidence 3566677777777888887766555554444 3555 4566677777776655544322111 11 123455554
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCchhHH
Q 015676 212 LIFVTVPSLASVFNEYALKSQYDTSIYHQ 240 (403)
Q Consensus 212 Lla~~~sa~a~Vy~ekllK~~~~~s~~~~ 240 (403)
.+.+++.-.-..|.+ +++++ ..++|..
T Consensus 113 ~l~~lLaL~vW~Ym~-lLr~~-GAs~Wti 139 (381)
T PF05297_consen 113 FLCCLLALGVWFYMW-LLREL-GASFWTI 139 (381)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHh-hhHHHHH
Confidence 444444433355655 55655 5677743
No 106
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=1.6e+02 Score=29.16 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHH
Q 015676 208 YLYTLIFVTVPSLASVFNEYALKSQYDTSI--YHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN 285 (403)
Q Consensus 208 ~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~--~~~n~~l~~~g~i~~~~~~l~~~~~~g~~~~~~~~g~~~~~~~~il~~ 285 (403)
...++..|+.|.+..+.++.++..+ +-|. ...-.|... +++. + .+.. .-|--..+.++--...-|.++-..
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y-~f~~~l~l~~~Q~l~-s~~~--v-~~lk--~~~lv~~~~l~~~~~kk~~P~~~l 86 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSY-NFPMGLLLMLLQSLA-SVLV--V-LVLK--RLGLVNFRPLDLRTAKKWFPVSLL 86 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-HHHH--H-HHHH--HhceeecCCcChHHHHHHccHHHH
Confidence 4566777788888888888887765 2232 222244322 2211 1 1110 001101011111123345544332
Q ss_pred HHHHHHHH-HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcC
Q 015676 286 AAQGILSS-FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 286 a~gg~~vs-~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~ 347 (403)
-.+.++.+ .-.||.+--.-...-..+++++++...++||..++...+....+.++|...+..
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 22333222 335665533334444567899999999999999999999999988888776654
No 107
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=61.79 E-value=4.1 Score=25.33 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=7.4
Q ss_pred ccccccccccccc
Q 015676 3 ECSVCHSTLELET 15 (403)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (403)
+|++|+|+++-..
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 5999999998554
No 108
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=60.13 E-value=14 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=36.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 015676 303 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 345 (403)
Q Consensus 303 ~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly 345 (403)
...+.++++..++++.+..+-.|...-..++|..+++.|+++.
T Consensus 81 avpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 81 AVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred eeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3446777889999999999887888889999999999998764
No 109
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=56.28 E-value=1.7e+02 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 015676 126 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL 192 (403)
Q Consensus 126 ly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~~ 192 (403)
...+..++--.|.-..+|-+..+-..+.++..++.=.++=++++|+.+++|-+..++|-+++.+++.
T Consensus 327 gtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 327 GTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3457778877888888998888888888888888888887999999999999999999999877654
No 110
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=53.66 E-value=1.8e+02 Score=28.98 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 115 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 115 r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
|..-....++++-.+--..-|.-+..++.-|.++..-.|-+.|-+++..++++++|...|+++.+...|+..-
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3334556666666666666677788888899999999999999999999999999999999999999999886
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=53.36 E-value=1.9e+02 Score=28.43 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCcccchhHHHHHHHHHHHHHHHHHHHHH----Hhh-c-cccccccchhHHHH
Q 015676 37 RFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLL----QAR-H-KKVGEKSLLSFSTI 110 (403)
Q Consensus 37 ~~l~~l~~~~~~~~~~~~~il~~~s~~~g~~~~~~~~~V~l~E~~Kl~i~~~~l~~----~~~-~-~~~~~~~~~~~~~~ 110 (403)
.....++++-.-+..++|-++-+ |.-.+++..|..+|=..-++.+++-..+... ... . +..++-.+.++.+.
T Consensus 174 iitGdllIiiaqiivaiQ~v~Ee--k~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEE--KQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH--hhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 34455555556666666654432 1223345667777777777775544333221 111 1 11111112223333
Q ss_pred HHhhhhh--hHHHHHHHH--HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015676 111 AQAARNN--VLLAVPAFL--YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 186 (403)
Q Consensus 111 ~~~~r~~--~~~~vpAll--y~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~l 186 (403)
+.+..+. +.++..+.. -+..|...-.--++.+++|=.++-.++..++=+++..+-.|++...|.++-+++..|+.+
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 222222222 124444444445678999999999999999999999999999999999999999999987
Q ss_pred h
Q 015676 187 N 187 (403)
Q Consensus 187 v 187 (403)
-
T Consensus 332 Y 332 (372)
T KOG3912|consen 332 Y 332 (372)
T ss_pred H
Confidence 4
No 112
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.75 E-value=3.9e+02 Score=29.95 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 144 ATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 144 ~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
+-..++..+.|+-.|.++...+.+|.+..-+.+.+-+++|...+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 34466788899999999999887776555577777777776544
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.20 E-value=15 Score=35.64 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=86.6
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015676 26 DRHRHQVSSKTRFLNVALVVGDCILVGLQPILVF--TTKVDGG-FKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEK 102 (403)
Q Consensus 26 ~~~~~~~~~k~~~l~~l~~~~~~~~~~~~~il~~--~s~~~g~-~~~~~~~~V~l~E~~Kl~i~~~~l~~~~~~~~~~~~ 102 (403)
.+-..++++....+.++ +.+..++-.+-.| ..+.++. +.+ .+...+..+++.+.++...+.-++.-+.
T Consensus 176 E~~~~~ls~~GvifGVl----aSl~vAlnaiytkk~l~~v~~~iw~l-----t~ynnv~a~lLflpll~lnge~~~v~~~ 246 (347)
T KOG1442|consen 176 EGSTGTLSWIGVIFGVL----ASLAVALNAIYTKKVLPPVGDCIWRL-----TAYNNVNALLLFLPLLILNGEFQAVVGF 246 (347)
T ss_pred ccccCccchhhhHHHHH----HHHHHHHHHHhhheecccccCeehhh-----HHHHHHHHHHHHHHHHHHcchHHHHcCc
Confidence 33345566665555554 4444444444444 1122221 222 2456666666666665544432221111
Q ss_pred cchhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015676 103 SLLSFSTIAQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLI 182 (403)
Q Consensus 103 ~~~~~~~~~~~~r~~~~~~vpAlly~l~n~L~f~al~~l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~ 182 (403)
|.+.-.+|| -.+.+-+++.+.-|+..++-++..+|-|.++-...|-..-.++++.+++|..+...|-+-++...
T Consensus 247 ~~l~a~~Fw------~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLv 320 (347)
T KOG1442|consen 247 PHLPAIKFW------ILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLV 320 (347)
T ss_pred ccchHHHHH------HHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEe
Confidence 111112222 24556666666667776677788899999999999999999999999999999999887776666
Q ss_pred HHHH
Q 015676 183 GISV 186 (403)
Q Consensus 183 Gv~l 186 (403)
|-..
T Consensus 321 gs~~ 324 (347)
T KOG1442|consen 321 GSLA 324 (347)
T ss_pred hhHH
Confidence 5543
No 114
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=49.05 E-value=1.1e+02 Score=30.85 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhc
Q 015676 286 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 346 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~~i~k~~a~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~ 346 (403)
++...+.-....+.|+.+-....-+.++.|++++++++++.++..+|....+.+.|+.+..
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3444444455667887777777778999999999999999999999999999999988776
No 115
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.74 E-value=25 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCC
Q 015676 329 MNFILGISIVFISMHQFFSPLSKVK 353 (403)
Q Consensus 329 ~~~~lG~~lVi~gv~ly~~~~~k~~ 353 (403)
-..+++++.+++|..+|.-.-.++.
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567888999999888876544443
No 116
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=43.84 E-value=2.7e+02 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHhcC
Q 015676 327 LTMNFILGISIVFISMHQFFS 347 (403)
Q Consensus 327 lt~~~~lG~~lVi~gv~ly~~ 347 (403)
-+...++|.++.+.++ +|..
T Consensus 283 ~~~~~iig~i~~~~~v-~yss 302 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSV-LYSS 302 (429)
T ss_pred chHHHHHHHHHHHHHH-HHhc
Confidence 4566789998888875 4433
No 117
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=41.63 E-value=8.9 Score=29.36 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=15.8
Q ss_pred cccccccccccccCCCccccccc
Q 015676 3 ECSVCHSTLELETVGGKTVSRAY 25 (403)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (403)
.||.|+||||.-+.-.|.-...|
T Consensus 27 tCSsC~SkLV~~Sdvtk~sl~~~ 49 (74)
T PF05077_consen 27 TCSSCQSKLVKFSDVTKVSLDEY 49 (74)
T ss_pred chhhhhhheeeeecccceehhhh
Confidence 59999999998774444434444
No 118
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.03 E-value=2.2e+02 Score=23.39 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred HHHHhccChHHHHHHhhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015676 135 FIMQLYFNPATVKMLSNL-KVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 187 (403)
Q Consensus 135 f~al~~l~~~t~~ll~q~-k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv 187 (403)
=++.+-.+++-...+.-. ....-+.|+.+.|||.+++.+|.|-.++..|+..+
T Consensus 60 RiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 60 RIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 334444444433333321 23344578999999999999999999988888665
No 119
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=38.74 E-value=14 Score=22.43 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=9.4
Q ss_pred Ccccccccccc
Q 015676 1 MIECSVCHSTL 11 (403)
Q Consensus 1 ~~~~~~~~~~~ 11 (403)
+++|++|..++
T Consensus 1 ~v~CPiC~~~v 11 (26)
T smart00734 1 LVQCPVCFREV 11 (26)
T ss_pred CCcCCCCcCcc
Confidence 57899999886
No 120
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=38.52 E-value=26 Score=30.31 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=29.1
Q ss_pred cccccccccccc-----------cCCCcccccccccCCcccchhHHHHHHH
Q 015676 3 ECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (403)
Q Consensus 3 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~l~~l 42 (403)
.|..|+.+|.-- +.+.++|+|+|-+..++--.+.+..-.+
T Consensus 43 kC~~cg~~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr~rIirAF 93 (135)
T PTZ00074 43 KCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVRDRIVRAF 93 (135)
T ss_pred CCCCCCCccCCccCCchHHHHHccccCCCccCCCccchhHHHHHHHHHHHH
Confidence 599999987542 3357899999999888866666554333
No 121
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=38.41 E-value=4.6e+02 Score=26.96 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=14.3
Q ss_pred chhHHHHHHHH----HHHHHHHHHHHHH
Q 015676 69 FSPVSVNFLTE----AVKVFFAIVMLLL 92 (403)
Q Consensus 69 ~~~~~~V~l~E----~~Kl~i~~~~l~~ 92 (403)
|..+.+||++. +.|+++-..+++-
T Consensus 302 ~~vA~VVFiASilVP~~Ki~~la~Ll~~ 329 (418)
T COG2995 302 YPVAAVVFLASILVPLLKIIALAWLLLS 329 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666554 5687766555443
No 122
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=36.53 E-value=2.7e+02 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 015676 220 LASVFNEYALKSQYDTSIYHQNLFLYGYGAIF 251 (403)
Q Consensus 220 ~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~ 251 (403)
.-++|.+++-|+ .-|+...|+ +.|+.+
T Consensus 59 VDs~y~~~~GRR----KSWiiP~Q~-l~g~~m 85 (544)
T PF13000_consen 59 VDSVYSKRIGRR----KSWIIPIQY-LSGILM 85 (544)
T ss_pred hhhhcccccCCc----chhhhHHHH-HHHHHH
Confidence 457788888765 468888885 344443
No 123
>PF13347 MFS_2: MFS/sugar transport protein
Probab=36.32 E-value=2.6e+02 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Q 015676 161 LKIIMKRRFSIIQWEALALLLIGI 184 (403)
Q Consensus 161 s~~~L~~rls~~qw~aL~ll~~Gv 184 (403)
.+-.+.||+++++...+..+..++
T Consensus 279 ~~~~l~~r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 279 LWGRLSKRFGKKKVYIIGLLLAAL 302 (428)
T ss_pred HHHHHHHHccceeehhhhHHHHHH
Confidence 334455666666655554444433
No 124
>PRK04570 cell division protein ZipA; Provisional
Probab=36.28 E-value=94 Score=29.45 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCcccccCCcc
Q 015676 333 LGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPK 368 (403)
Q Consensus 333 lG~~lVi~gv~ly~~~~~k~~~~~~~~~~~~~~~~~ 368 (403)
+..++.+.+++++..|++++ +.-.+|-.+++-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~ 44 (243)
T PRK04570 13 IAGLLLVAAIFLFGRPKKSP----QGRRVDKEEPQP 44 (243)
T ss_pred HHHHHHHHHHHHhcCCCCCc----ccccccccCCCC
Confidence 33445566788888766554 334455555554
No 125
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.76 E-value=23 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=18.2
Q ss_pred cccccccccccccCC-CcccccccccCCcccc
Q 015676 3 ECSVCHSTLELETVG-GKTVSRAYDRHRHQVS 33 (403)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 33 (403)
.|.+||..+..+..= |+.=.+.|.+.|++..
T Consensus 5 HC~~CG~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 5 HCPVCGKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred cCCcCCCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 699999887643311 1223456666666655
No 126
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=34.66 E-value=2.8e+02 Score=28.61 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHH--hhcCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015676 156 VIALLLKIIMKRRFS----IIQWEALALLLIGISV--NQLRSLPEGTSALGLP-VATGAYLYTLIFVTVPSLASVFNEYA 228 (403)
Q Consensus 156 ~tAl~s~~~L~~rls----~~qw~aL~ll~~Gv~l--v~~~~~~~~~~~~~~~-~~~~G~ll~Lla~~~sa~a~Vy~ekl 228 (403)
+.++...++++||.. ..+=-.+.+.++|..+ +.+-+.+.++. .+.+ ......+-+.+++...+++....|++
T Consensus 172 ~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSa-l~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~ 250 (409)
T COG0004 172 FAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSA-LAANGVAALAFVNTNLAAAAGALGWMLIEWL 250 (409)
T ss_pred HHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999998874 2222233344444443 33333322321 1111 11123344566777778888899998
Q ss_pred hhcc
Q 015676 229 LKSQ 232 (403)
Q Consensus 229 lK~~ 232 (403)
.+++
T Consensus 251 ~~~K 254 (409)
T COG0004 251 RNGK 254 (409)
T ss_pred HcCC
Confidence 8654
No 127
>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.
Probab=34.56 E-value=23 Score=28.68 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred ccccccccccccc-----------cCCCcccccccccCCcccchhHHHH
Q 015676 2 IECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSKTRFL 39 (403)
Q Consensus 2 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~l 39 (403)
..|..|+.+|.-- +...|+++|+|-+..++-=.+....
T Consensus 42 pkC~~cg~~L~Gi~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cvr~rI~ 90 (94)
T PF01199_consen 42 PKCGDCGKPLNGIPALRPVELRRLSKRQKTVSRAYGGSLCHKCVRERIK 90 (94)
T ss_dssp -BSTSSS-BSSSS-SS-SSTTGTS-CHCH--CCTSSSS-HHHHHHHHHH
T ss_pred CCcCccCCcccccccccHHHHhhcccCCCCCCCCCCccchHHHHHHHHH
Confidence 3699999987642 2235899999999988866665543
No 128
>PRK04059 rpl34e 50S ribosomal protein L34e; Validated
Probab=31.38 E-value=25 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=26.0
Q ss_pred cccccccccccc-----------cCCCcccccccccCCcccchhHH
Q 015676 3 ECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSKTR 37 (403)
Q Consensus 3 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~ 37 (403)
.|..|+.+|.-- +-..|+|+|||-+..++--.+.+
T Consensus 36 kC~~c~~~L~Gi~~~Rp~~~~rlsK~~K~vsRaYGG~lc~~cvr~r 81 (88)
T PRK04059 36 KCAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCPKCLKRL 81 (88)
T ss_pred cCCCCCCccCCccCcchHHHHhcccccCCcccCcCceecHHHHHHH
Confidence 599999988542 22579999999998887655544
No 129
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=30.48 E-value=4.3e+02 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHhhHHHHHHHHHHHHH----h---------CCCc------hHHHHHHHHHHHHHHHHh
Q 015676 306 YSSTVATIFTGLASAAL----F---------GHTL------TMNFILGISIVFISMHQF 345 (403)
Q Consensus 306 ~a~~~~iv~t~lls~~l----f---------ge~l------t~~~~lG~~lVi~gv~ly 345 (403)
...+++.+++..+|-++ + +.-| +..-.+|+++++...+..
T Consensus 79 ~~~al~LIlGGAlGNliDRl~~G~VvDFi~~~~~p~iFNvADi~I~iGv~llll~~~~~ 137 (186)
T PRK14778 79 ERMAMGFILGGALGNLLDRIRFGYVLDFLNLTFLPTIFNLADVFIIVGGALMILGVFRG 137 (186)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcCceEEEEEeccccceeEHHHHHHHHHHHHHHHHHHhc
Confidence 33456677777776652 1 2122 344567777777765543
No 130
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=30.14 E-value=5.4e+02 Score=25.31 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=42.0
Q ss_pred cChHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 141 FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 141 l~~~t~~ll~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
..+.+...+...+=..|-++|++++-|.++....-+..+.+.|+.+...+.
T Consensus 284 fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 284 FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 355566666666667788999999999999999999999999999887765
No 131
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=29.93 E-value=7.5e+02 Score=26.90 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 015676 172 IQWEALALLLIGISVNQLR 190 (403)
Q Consensus 172 ~qw~aL~ll~~Gv~lv~~~ 190 (403)
..|++++|.+.|++++..+
T Consensus 239 lD~IG~~L~~~Gl~LfLlg 257 (599)
T PF06609_consen 239 LDWIGIFLFIAGLALFLLG 257 (599)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4599999999999987543
No 132
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.69 E-value=18 Score=30.83 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 015676 2 IECSVCHSTLELET 15 (403)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (403)
++|++|||.-|+..
T Consensus 33 v~CPvCgs~~VsK~ 46 (142)
T COG5319 33 VTCPVCGSTEVSKL 46 (142)
T ss_pred eeCCCCCcHHHHHH
Confidence 68999999866533
No 133
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.26 E-value=4.3e+02 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=14.4
Q ss_pred HhCCCchHHHHHHHHHHHHH
Q 015676 322 LFGHTLTMNFILGISIVFIS 341 (403)
Q Consensus 322 lfge~lt~~~~lG~~lVi~g 341 (403)
++|.+-+|..+.+..++..-
T Consensus 176 ilGt~~~W~~l~~~~~i~~~ 195 (485)
T KOG0569|consen 176 LLGTEDLWPYLLAFPLIPAL 195 (485)
T ss_pred hcCCCcchHHHHHHHHHHHH
Confidence 67888888777777766543
No 134
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.14 E-value=7.3e+02 Score=25.82 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=36.4
Q ss_pred HhcCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015676 164 IMKRRFSIIQWEALALLL--IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ 232 (403)
Q Consensus 164 ~L~~rls~~qw~aL~ll~--~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~ 232 (403)
+-|+|+.+.|++=+.+.. .=+.++.+..+ .++ +....+.+..+.++-+.|...++|+.
T Consensus 318 ~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh--------i~F---~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 318 LSKLRIHPIQYLLVGLALVLFYLLLLSLSEH--------IGF---NLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHhh--------hch---HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 337899999986554433 23333333321 112 34556666777788899999999975
No 135
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.90 E-value=30 Score=25.08 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=9.1
Q ss_pred cccccccccccccc
Q 015676 2 IECSVCHSTLELET 15 (403)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (403)
.+|++|+..+..|.
T Consensus 3 ~~CP~CG~~iev~~ 16 (54)
T TIGR01206 3 FECPDCGAEIELEN 16 (54)
T ss_pred cCCCCCCCEEecCC
Confidence 46777777766654
No 136
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=25.81 E-value=7.4e+02 Score=25.47 Aligned_cols=23 Identities=13% Similarity=-0.063 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 015676 209 LYTLIFVTVPSLASVFNEYALKS 231 (403)
Q Consensus 209 ll~Lla~~~sa~a~Vy~ekllK~ 231 (403)
+=+.+++..++++....++..++
T Consensus 244 ~NT~la~a~g~l~~~~~~~~~~g 266 (404)
T TIGR03644 244 ANTNAAAAGGAIAALLLTKLLFG 266 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456666777888888887654
No 137
>PLN03166 60S ribosomal protein L34; Provisional
Probab=24.69 E-value=49 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=26.9
Q ss_pred cccccccccccc-----c--------cCCCcccccccccCCcccchhHHHH
Q 015676 2 IECSVCHSTLEL-----E--------TVGGKTVSRAYDRHRHQVSSKTRFL 39 (403)
Q Consensus 2 ~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~k~~~l 39 (403)
..|.+|+.+|.- | +-..|+|+|||-+..++--.|....
T Consensus 42 pkC~~cg~~L~Gi~~~Rp~~~~~~~lsK~~K~vsRaYGG~lc~~cvr~rIv 92 (96)
T PLN03166 42 PKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRERII 92 (96)
T ss_pred CcCCCCCCccCCccCCChhhhhhhhcccCcCccccCcCCcccHHHHHHHHH
Confidence 359999988753 1 2246899999999888766665443
No 138
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=24.53 E-value=5.9e+02 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=18.9
Q ss_pred CChhHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHhhHH
Q 015676 273 GHSKATMLLICNNAAQGI-LSSFFFKYADTILKKYSSTVA 311 (403)
Q Consensus 273 g~~~~~~~~il~~a~gg~-~vs~v~Ky~~~i~k~~a~~~~ 311 (403)
|.++.+-+.+.+.++++- ....+.--.|+.+.++++...
T Consensus 156 Gr~PlaGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA 195 (513)
T TIGR00819 156 GRHPLAGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAA 195 (513)
T ss_pred CCChHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHH
Confidence 455555444444444333 222334445666666665543
No 139
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.41 E-value=4.7e+02 Score=22.71 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015676 173 QWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ 232 (403)
Q Consensus 173 qw~aL~ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~ 232 (403)
-+++++.+.++++........+++ + .+.|....++++.++.+-+.|.....|+.
T Consensus 9 ~~l~~Ff~~~~~vY~~~t~~~~~~---~---E~~Gt~aL~ls~~l~~mig~yl~~~~rr~ 62 (137)
T PF12270_consen 9 YGLAVFFLVVAVVYGFWTKWSGDG---G---EWVGTVALVLSGGLALMIGFYLRFTARRI 62 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---C---CcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355666666666654433221111 1 22366777777778888888888777764
No 140
>smart00746 TRASH metallochaperone-like domain.
Probab=24.40 E-value=33 Score=20.64 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=9.9
Q ss_pred cccccccccccc
Q 015676 4 CSVCHSTLELET 15 (403)
Q Consensus 4 ~~~~~~~~~~~~ 15 (403)
|.+|+..+..+.
T Consensus 1 c~~C~~~~~~~~ 12 (39)
T smart00746 1 CSFCGKDIYNPG 12 (39)
T ss_pred CCCCCCCccCCC
Confidence 899999987665
No 141
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=24.32 E-value=8e+02 Score=25.33 Aligned_cols=51 Identities=14% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHhhhhHHHHHhh--HHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHHHHhc
Q 015676 296 FKYADTILKKYSST--VATIFTGLASAALFGHTLT--MNFILGISIVFISMHQFF 346 (403)
Q Consensus 296 ~Ky~~~i~k~~a~~--~~iv~t~lls~~lfge~lt--~~~~lG~~lVi~gv~ly~ 346 (403)
-||..+++.+-+.+ +..+...+.-..+-+++-+ ..|.++.++++..+.+|.
T Consensus 147 ~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 147 SEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYL 201 (406)
T ss_pred HHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHH
Confidence 46666665443322 1122222222223333332 366777777888888887
No 142
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.16 E-value=30 Score=24.62 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=6.3
Q ss_pred ccccccccccccc
Q 015676 3 ECSVCHSTLELET 15 (403)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (403)
.|++|++.+....
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 5999999875443
No 143
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=22.97 E-value=4.5e+02 Score=27.99 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=4.8
Q ss_pred ccCCCCC
Q 015676 394 NEEKAPL 400 (403)
Q Consensus 394 ~~~~~~~ 400 (403)
+|+|+||
T Consensus 499 ~~~~~~~ 505 (511)
T TIGR00806 499 EDDRADL 505 (511)
T ss_pred ccCcccc
Confidence 5677776
No 144
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=22.58 E-value=1e+03 Score=25.91 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 015676 211 TLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIF 251 (403)
Q Consensus 211 ~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~ 251 (403)
.++.+++.++-..|.||.+|+. .|..++.+..-+.++++
T Consensus 210 gvip~Il~~~l~~~iek~~~k~--vP~~l~~~f~Pli~~li 248 (610)
T TIGR01995 210 SVIPVILAVWLMSYVEKFLKKV--IPGALKNFLTPLLVMLI 248 (610)
T ss_pred cHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 3445556677777999988874 45555554433333333
No 145
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=21.04 E-value=5.9e+02 Score=26.18 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHh--hcCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 015676 156 VIALLLKIIMKRRFSII------QWEALALLLIGISVN--QLRSLPEGTSALGLP-VATGAYLYTLIFVTVPSLASVFNE 226 (403)
Q Consensus 156 ~tAl~s~~~L~~rls~~------qw~aL~ll~~Gv~lv--~~~~~~~~~~~~~~~-~~~~G~ll~Lla~~~sa~a~Vy~e 226 (403)
.+++...++|++|..+. +--...+.++|..+. .+.+.+.++. ...+ ......+=+.+++..++++....+
T Consensus 169 ~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~-~~~~~~~~~a~~nT~lA~a~g~l~~~~~~ 247 (403)
T TIGR00836 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSA-LAANGTAAYAAVNTNLAAAAGGLTWLLID 247 (403)
T ss_pred HHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhh-cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888776443 112344444444432 2233222211 1111 111233445667777778888888
Q ss_pred HHhhc
Q 015676 227 YALKS 231 (403)
Q Consensus 227 kllK~ 231 (403)
++.++
T Consensus 248 ~~~~g 252 (403)
T TIGR00836 248 WLKHG 252 (403)
T ss_pred HHhcC
Confidence 87544
No 146
>COG2855 Predicted membrane protein [Function unknown]
Probab=20.79 E-value=8.6e+02 Score=24.40 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCCccccccCChhH
Q 015676 208 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQGHSKA 277 (403)
Q Consensus 208 ~ll~Lla~~~sa~a~Vy~ekllK~~~~~s~~~~n~~l~~~g~i~~~~~~l~-~~~~~g~~~~~~~~g~~~~ 277 (403)
.+..-+++.|.+-|-.-.|-..|.+ +++.-.--.-..++|++..+..-.+ ....-+++..|.|.|-+..
T Consensus 125 ~Lia~GssICGasAiaA~~pvika~-~~eva~aIa~V~lfgtia~llyP~l~~~l~l~~~~~GifaG~TvH 194 (334)
T COG2855 125 LLIAAGSSICGASAIAATAPVIKAE-EEEVAVAIAVVVLFGTLAMLLYPLLYPLLGLSPEQFGIFAGSTVH 194 (334)
T ss_pred HHHHccchhhHHHHHHHhCCcCCCC-ccccceehhhHHHHHHHHHHHHHHHHHHhCCCcchheeeechhHH
Confidence 3444445566665556677777754 2222222222334555544332221 2111223344566665543
No 147
>PHA02893 hypothetical protein; Provisional
Probab=20.61 E-value=31 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.5
Q ss_pred ccccccccccccc
Q 015676 3 ECSVCHSTLELET 15 (403)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (403)
.|+.|+|||+.-+
T Consensus 36 TCSsC~SKLV~~S 48 (88)
T PHA02893 36 TCQICQSKLVMFS 48 (88)
T ss_pred chhhhhcceeeee
Confidence 5999999999877
No 148
>PHA03049 IMV membrane protein; Provisional
Probab=20.52 E-value=1.3e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCc
Q 015676 329 MNFILGISIVFISMHQFFSPLSK 351 (403)
Q Consensus 329 ~~~~lG~~lVi~gv~ly~~~~~k 351 (403)
-..+++++.+++|..+|.-...|
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34577888888888877654333
No 149
>PRK11715 inner membrane protein; Provisional
Probab=20.24 E-value=9.9e+02 Score=24.90 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015676 166 KRRFSIIQWEALALLL--IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ 232 (403)
Q Consensus 166 ~~rls~~qw~aL~ll~--~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ekllK~~ 232 (403)
|.|+.+.|++=+.+.. .=+.++.+..+ .+ .+....+.++.+.++-+.|...++|+.
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlSEH--------ig---F~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLSEH--------IG---FTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHHhh--------hc---hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6799999986444333 33334444321 11 244566777777788899999999875
Done!