Query 015676
Match_columns 403
No_of_seqs 236 out of 1225
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 9.2E-06 3.2E-10 66.7 10.3 71 121-191 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 2.5E-06 8.4E-11 73.0 6.1 84 284-368 39-123 (137)
3 2i68_A Protein EMRE; transmemb 98.1 5.2E-06 1.8E-10 71.0 6.8 71 121-191 34-105 (137)
4 3b5d_A Multidrug transporter E 97.5 0.00077 2.6E-08 55.1 10.4 63 286-348 41-104 (110)
5 3b9w_A Ammonium transporter fa 68.7 88 0.003 30.8 14.0 73 155-229 150-229 (407)
6 3u5e_g 60S ribosomal protein L 44.3 15 0.0005 30.0 3.0 40 3-42 43-93 (121)
7 3iz5_i 60S ribosomal protein L 39.7 19 0.00063 29.3 2.8 40 3-42 43-95 (119)
8 3hd6_A Ammonium transporter RH 22.1 6.1E+02 0.021 25.4 16.6 73 156-229 195-276 (490)
9 1l8d_A DNA double-strand break 22.0 22 0.00076 28.0 0.4 10 3-12 49-58 (112)
10 1rwj_A Cytochrome C family pro 21.6 31 0.0011 25.9 1.2 11 2-12 30-40 (82)
11 4a18_L RPL34; ribosome, eukary 21.3 62 0.0021 26.4 2.9 40 3-42 43-95 (123)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.20 E-value=9.2e-06 Score=66.72 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
..-.++|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+..+...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44456788899999999999999999877 899999999999999999999999999999999999986643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.16 E-value=2.5e-06 Score=72.97 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCccc
Q 015676 284 NNAAQGILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLE 362 (403)
Q Consensus 284 ~~a~gg~~vs~v~Ky~~~i~k~~a-~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~~~k~~~~~~~~~~~ 362 (403)
..++.-.+....+|+.+....... +.+.+++++++++++|||++|...++|+++|+.|+++.+..... ...++...+|
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~~-~~~~~~~~v~ 117 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS-TPHEFEAYVE 117 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC-CCCCcccchh
Confidence 334444556677777775544444 78999999999999999999999999999999999988754322 2224555666
Q ss_pred ccCCcc
Q 015676 363 SVDSPK 368 (403)
Q Consensus 363 ~~~~~~ 368 (403)
++|..|
T Consensus 118 ~~~~~~ 123 (137)
T 2i68_A 118 QKLISE 123 (137)
T ss_dssp ------
T ss_pred hhhcCH
Confidence 666554
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.09 E-value=5.2e-06 Score=70.95 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015676 121 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 191 (403)
Q Consensus 121 ~vpAlly~l~n~L~f~al~~l~~~t~~ll-~q~k~i~tAl~s~~~L~~rls~~qw~aL~ll~~Gv~lv~~~~ 191 (403)
.+-.++|.+...+.+.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|+.++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34456788999999999999999988777 899999999999999999999999999999999999987643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.49 E-value=0.00077 Score=55.09 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhcCC
Q 015676 286 AAQGILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 348 (403)
Q Consensus 286 a~gg~~vs~v~Ky~~~i~k~~a-~~~~iv~t~lls~~lfge~lt~~~~lG~~lVi~gv~ly~~~ 348 (403)
++.-.+....+|+.+.-..... ..+.++++.++++++|||++|...++|.++++.|+.+.+..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344555667887775444333 67899999999999999999999999999999999887653
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=68.69 E-value=88 Score=30.82 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015676 155 FVIALLLKIIMKRRFSI-----IQWEALALLLIGISVN--QLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEY 227 (403)
Q Consensus 155 i~tAl~s~~~L~~rls~-----~qw~aL~ll~~Gv~lv--~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~ek 227 (403)
-+.++...++|+||..+ .+--.+.+.++|..+. .+.+.+.+. ..+ .......+=+.+++..++++....++
T Consensus 150 G~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl-~~~-~~~~~a~~NT~lAaaag~l~~~~~~~ 227 (407)
T 3b9w_A 150 AYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI-VPF-EQMPQTIVNTLLALCGATLATYFLSA 227 (407)
T ss_dssp HHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT-SCG-GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh-ccc-hhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35677788888876432 1233445555555443 111111110 001 11112334455666667777777777
Q ss_pred Hh
Q 015676 228 AL 229 (403)
Q Consensus 228 ll 229 (403)
+.
T Consensus 228 ~~ 229 (407)
T 3b9w_A 228 LF 229 (407)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 6
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=44.35 E-value=15 Score=30.02 Aligned_cols=40 Identities=35% Similarity=0.474 Sum_probs=28.6
Q ss_pred ccccccccccc-c----------cCCCcccccccccCCcccchhHHHHHHH
Q 015676 3 ECSVCHSTLEL-E----------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (403)
Q Consensus 3 ~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~k~~~l~~l 42 (403)
.|.+|+.+|.- | +...|+++|+|-+..++-=.+.+..-.+
T Consensus 43 kCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 93 (121)
T 3u5e_g 43 KCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93 (121)
T ss_dssp BCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHH
T ss_pred CCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHH
Confidence 59999998754 1 2234799999999999877666654333
No 7
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=39.65 E-value=19 Score=29.35 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=29.4
Q ss_pred ccccccccccc-c------------cCCCcccccccccCCcccchhHHHHHHH
Q 015676 3 ECSVCHSTLEL-E------------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (403)
Q Consensus 3 ~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~k~~~l~~l 42 (403)
.|.+|+.+|.- | +.+.|+++|+|-+..++-=.+.+..-.+
T Consensus 43 kC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~rAF 95 (119)
T 3iz5_i 43 KCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAF 95 (119)
T ss_dssp CSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHHHHH
Confidence 49999987753 1 2234799999999999988777765444
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=22.06 E-value=6.1e+02 Score=25.42 Aligned_cols=73 Identities=21% Similarity=0.082 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015676 156 VIALLLKIIMKRRFS-------IIQWEALALLLIGISVN--QLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNE 226 (403)
Q Consensus 156 ~tAl~s~~~L~~rls-------~~qw~aL~ll~~Gv~lv--~~~~~~~~~~~~~~~~~~~G~ll~Lla~~~sa~a~Vy~e 226 (403)
+.++...++|+||-. ..+--.+.+.++|..+. .+.+.+.+.. ..........+=+.+++..++++....+
T Consensus 195 ~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~-~~~~~~~~a~~NT~lAaAag~lt~~~~s 273 (490)
T 3hd6_A 195 YFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAIS-YHGDSQHRAAINTYCSLAACVLTSVAIS 273 (490)
T ss_dssp HHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788877621 01123444555555443 2222111111 1000111123344556666677777788
Q ss_pred HHh
Q 015676 227 YAL 229 (403)
Q Consensus 227 kll 229 (403)
++.
T Consensus 274 ~l~ 276 (490)
T 3hd6_A 274 SAL 276 (490)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.03 E-value=22 Score=28.00 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=8.6
Q ss_pred cccccccccc
Q 015676 3 ECSVCHSTLE 12 (403)
Q Consensus 3 ~~~~~~~~~~ 12 (403)
.||+|++.+.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 5999999875
No 10
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=21.60 E-value=31 Score=25.92 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=9.2
Q ss_pred ccccccccccc
Q 015676 2 IECSVCHSTLE 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
.+|..||.++.
T Consensus 30 ~~C~~CH~~~f 40 (82)
T 1rwj_A 30 YKCNECHTKLF 40 (82)
T ss_dssp CCGGGTBTTTB
T ss_pred CChhhcccccc
Confidence 47999999974
No 11
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=21.34 E-value=62 Score=26.36 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=27.1
Q ss_pred cccccc--cccccc-----------cCCCcccccccccCCcccchhHHHHHHH
Q 015676 3 ECSVCH--STLELE-----------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (403)
Q Consensus 3 ~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~l~~l 42 (403)
.|..|+ .+|.-- +...|+|+|+|-+..++-=.+.+..-.+
T Consensus 43 kCg~cg~~~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 95 (123)
T 4a18_L 43 KCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRSRIIRAF 95 (123)
T ss_dssp BCCSTTTCCBCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCccccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHHHHHHHH
Confidence 599999 665321 1123799999999999877766654433
Done!