Query 015676
Match_columns 403
No_of_seqs 236 out of 1225
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 16:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa4 g.37.1.1 (A:8-34) GLI- 75.5 0.39 2.8E-05 26.4 0.7 11 2-12 1-11 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 36.7 1.2E+02 0.0088 25.8 15.6 18 169-186 19-36 (447)
3 d1x61a2 g.39.1.3 (A:35-66) Thy 33.9 5.6 0.00041 22.7 0.6 11 3-13 1-11 (32)
4 d1rwja_ a.138.1.1 (A:) Cytochr 33.4 7.3 0.00053 27.7 1.3 24 2-25 30-53 (81)
5 d1rutx4 g.39.1.3 (X:114-146) L 29.2 7.5 0.00055 22.3 0.6 12 3-14 1-12 (33)
6 d2epqa1 g.37.1.1 (A:380-411) P 27.3 7.8 0.00056 21.9 0.4 10 2-11 4-13 (32)
7 d2ey4e1 g.41.16.1 (E:4-55) Rib 23.9 7 0.00051 25.4 -0.2 19 3-23 16-34 (52)
8 d1ibia2 g.39.1.3 (A:145-175) C 23.4 10 0.00074 21.3 0.4 18 3-20 2-19 (31)
9 d2csha2 g.37.1.1 (A:61-104) Zi 20.5 13 0.00096 22.6 0.6 11 2-12 6-16 (44)
10 d1t2ya_ g.46.1.1 (A:) Metallot 19.7 14 0.001 19.6 0.5 8 3-10 18-25 (26)
No 1
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=75.55 E-value=0.39 Score=26.41 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=9.0
Q ss_pred ccccccccccc
Q 015676 2 IECSVCHSTLE 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
++|+.||.+..
T Consensus 1 vqcp~c~k~f~ 11 (27)
T d2dlqa4 1 VECPTCHKKFL 11 (27)
T ss_dssp CCCTTTCCCCS
T ss_pred CcCcchHHHHH
Confidence 58999998754
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=36.74 E-value=1.2e+02 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.578 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015676 169 FSIIQWEALALLLIGISV 186 (403)
Q Consensus 169 ls~~qw~aL~ll~~Gv~l 186 (403)
..+.||.-+.+++++...
T Consensus 19 ~~~~~w~i~~~~~~~~~~ 36 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAA 36 (447)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 345567666666665443
No 3
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.94 E-value=5.6 Score=22.74 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=8.6
Q ss_pred ccccccccccc
Q 015676 3 ECSVCHSTLEL 13 (403)
Q Consensus 3 ~~~~~~~~~~~ 13 (403)
-|.+||+|+.-
T Consensus 1 vC~tC~~kLRG 11 (32)
T d1x61a2 1 VCSTCRAQLRG 11 (32)
T ss_dssp BCSSSCCBCTT
T ss_pred CeeEeCceecC
Confidence 38999999754
No 4
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Probab=33.41 E-value=7.3 Score=27.75 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=17.0
Q ss_pred ccccccccccccccCCCccccccc
Q 015676 2 IECSVCHSTLELETVGGKTVSRAY 25 (403)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (403)
..|..||.+|.....+++.+.-|+
T Consensus 30 ~~C~~CH~~iF~~~~~~~~~tMa~ 53 (81)
T d1rwja_ 30 YKCNECHTKLFAYKAGAKRFTMAD 53 (81)
T ss_dssp CCGGGTBTTTBCSSTTSSCCCHHH
T ss_pred CCccccchhhcccCCCCCcccHHH
Confidence 479999999976665555555543
No 5
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.21 E-value=7.5 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 015676 3 ECSVCHSTLELE 14 (403)
Q Consensus 3 ~~~~~~~~~~~~ 14 (403)
.|+.||.++|..
T Consensus 1 tC~tC~n~LVPG 12 (33)
T d1rutx4 1 TCSTCRNRLVPG 12 (33)
T ss_dssp BCTTTCCBCCTT
T ss_pred CcccccccccCC
Confidence 499999998754
No 6
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.30 E-value=7.8 Score=21.90 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=8.1
Q ss_pred cccccccccc
Q 015676 2 IECSVCHSTL 11 (403)
Q Consensus 2 ~~~~~~~~~~ 11 (403)
.+|++|+.+.
T Consensus 4 ~~cpic~qrf 13 (32)
T d2epqa1 4 YSCPVCGLRF 13 (32)
T ss_dssp SEETTTTEEC
T ss_pred cccchHHHHh
Confidence 5899999874
No 7
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.89 E-value=7 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=13.1
Q ss_pred cccccccccccccCCCccccc
Q 015676 3 ECSVCHSTLELETVGGKTVSR 23 (403)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (403)
+|+.|+++..++. +.--|+
T Consensus 16 ~CP~CG~~t~~a~--ParfSP 34 (52)
T d2ey4e1 16 VCPVCGEKTKVAH--PPRFSP 34 (52)
T ss_dssp BCTTTCCBCEESS--CCCCCT
T ss_pred cCcCCCCcccccC--CCCCCC
Confidence 6889998877665 444454
No 8
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=23.36 E-value=10 Score=21.32 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.7
Q ss_pred cccccccccccccCCCcc
Q 015676 3 ECSVCHSTLELETVGGKT 20 (403)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (403)
.|..|++.+.+.++.+|+
T Consensus 2 rca~cgk~lestt~adkd 19 (31)
T d1ibia2 2 RCAKCGKSLESTTLTEKE 19 (31)
T ss_dssp ECSSSCCEECSSCSEEET
T ss_pred ccccccCccccceeeccC
Confidence 699999999988866554
No 9
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.54 E-value=13 Score=22.60 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=8.8
Q ss_pred ccccccccccc
Q 015676 2 IECSVCHSTLE 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
.||+.|++|..
T Consensus 6 YeC~~C~KrFM 16 (44)
T d2csha2 6 YECNICAKRFM 16 (44)
T ss_dssp EECSSSCCEES
T ss_pred eeccchhhhhh
Confidence 58999988854
No 10
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=19.68 E-value=14 Score=19.62 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=6.2
Q ss_pred cccccccc
Q 015676 3 ECSVCHST 10 (403)
Q Consensus 3 ~~~~~~~~ 10 (403)
.|+.|+||
T Consensus 18 scsncgsk 25 (26)
T d1t2ya_ 18 SCSNCGSK 25 (26)
T ss_dssp CSSTTSCC
T ss_pred cccccccC
Confidence 58888876
Done!