BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015678
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1
PE=1 SV=1
Length = 488
Score = 523 bits (1347), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/341 (72%), Positives = 286/341 (83%), Gaps = 4/341 (1%)
Query: 65 ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
+C S +G+ RHEL+LGNTF A G++ P KEVPP+EFNRRV EGFQ TP WHQ
Sbjct: 150 LCQYEQDSHNFWGD--RHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQ 207
Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
G I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAG
Sbjct: 208 GHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAG 267
Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
GLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQ
Sbjct: 268 GLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 327
Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
LP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY AEN+ H+VEL+A T
Sbjct: 328 LPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTN 387
Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+ S MAA+E+GGGP
Sbjct: 388 EAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGP 447
Query: 364 WFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
WF TWK T+ TPELL++ L VP+D++ G VPFFKPPGL
Sbjct: 448 WFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488
>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp.
japonica GN=VTE1 PE=2 SV=1
Length = 470
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/339 (69%), Positives = 276/339 (81%), Gaps = 3/339 (0%)
Query: 65 ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
IC T KS +G SRHELMLGNTF + GS PP EVPPQEF+ RVLEGFQVTP+WHQ
Sbjct: 135 ICQFTEKSNNFWG--SRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQ 192
Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
G I DDGR+ + V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAG
Sbjct: 193 GFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAG 252
Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
GLSTGWIEWDGERFEF++APSYSEKNWG FPRKW+WVQCNVF GA+GEVALTA GGLR+
Sbjct: 253 GLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRK 312
Query: 245 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 304
+ + +++E+ ++IGIHY+G YEFVPW G VSW+I+ WG+W + EN+ H+VE++ATTK
Sbjct: 313 IGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKE 372
Query: 305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPW 364
PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPW
Sbjct: 373 PGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPW 432
Query: 365 FNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
FN WK T + E++ + VDV+ LF +PF KPPGL
Sbjct: 433 FNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470
>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2
SV=1
Length = 474
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 276/339 (81%), Gaps = 3/339 (0%)
Query: 65 ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
IC + KS +G SRHELMLGNTF ++K S PP EVPPQ+F+RRVLEG QVTP+WHQ
Sbjct: 139 ICQFSEKSNNFWG--SRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQ 196
Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
G I DDGR+N+ V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA
Sbjct: 197 GFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMAR 256
Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
GLSTGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR+
Sbjct: 257 GLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRK 316
Query: 245 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 304
+ + D++E+ ++IGIHY+G +EFVPW G VSW+I WG W + EN+TH+VE++ATT
Sbjct: 317 IGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAE 376
Query: 305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPW 364
GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPW
Sbjct: 377 SGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPW 436
Query: 365 FNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
FN WK T E++ + PVDV+ L +PF KPPGL
Sbjct: 437 FNGWKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474
>sp|A8IAN5|RPOA_AZOC5 DNA-directed RNA polymerase subunit alpha OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rpoA PE=3 SV=1
Length = 341
Score = 38.5 bits (88), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 212 GGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPW 271
GA P++ V E G +T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 22 AGADPKRLATVVAEPLERGFG---MTLGNSLRRI-LLSSLQGAAVTSVHIDGVLHEFSSI 77
Query: 272 NGV 274
GV
Sbjct: 78 PGV 80
>sp|A7IPP6|RPOA_XANP2 DNA-directed RNA polymerase subunit alpha OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpoA PE=3
SV=1
Length = 338
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G P+++ V E G +T G LR++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GHDPKRFATVIAEPLERGFG---MTLGNALRRI-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 273 GV 274
GV
Sbjct: 76 GV 77
>sp|B6IRT0|RPOA_RHOCS DNA-directed RNA polymerase subunit alpha OS=Rhodospirillum
centenum (strain ATCC 51521 / SW) GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P++ + E G LT G +R++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GSDPKREATIVAGPLERGFG---LTLGNAIRRV-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 273 GV 274
GV
Sbjct: 76 GV 77
>sp|B8EIT5|RPOA_METSB DNA-directed RNA polymerase subunit alpha OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G P+++ + E G LT G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 20 GDDPKRFATIVAGPLELGFG---LTLGNSLRRI-LLSSLQGAAITSVHIDGVLHEFSSIP 75
Query: 273 GV 274
GV
Sbjct: 76 GV 77
>sp|B2IF96|RPOA_BEII9 DNA-directed RNA polymerase subunit alpha OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rpoA PE=3 SV=1
Length = 338
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 236 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
LT G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 40 LTLGNALRRI-LLSSLQGAAITSVHIDGVLHEFSSIPGV 77
>sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha OS=Maricaulis maris
(strain MCS10) GN=rpoA PE=3 SV=1
Length = 339
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 236 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
+T G LR++ +L S + AA+ +H DG+++EF +GV
Sbjct: 40 MTLGNALRRV-LLSSLQGAAVTNVHIDGVVHEFSSIDGV 77
>sp|Q89JA7|RPOA_BRAJA DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rpoA PE=3 SV=1
Length = 343
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 25 GSDPARFATIVAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 80
Query: 273 GV 274
GV
Sbjct: 81 GV 82
>sp|B8IT35|RPOA_METNO DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G P++ V E G T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GHDPKRIATVVAEPLERGFG---TTLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIP 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|Q4FLP1|RPOA_PELUB DNA-directed RNA polymerase subunit alpha OS=Pelagibacter ubique
(strain HTCC1062) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 236 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
LT G LR++ +L S AA+ I DG+L+EF GV
Sbjct: 44 LTLGNSLRRI-LLSSIRGAAVTSIQIDGVLHEFTSIKGV 81
>sp|B0UHU5|RPOA_METS4 DNA-directed RNA polymerase subunit alpha OS=Methylobacterium sp.
(strain 4-46) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G P++ V E G T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GHDPKRVATVVAEPLERGFG---TTLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIP 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|A9B437|RPOA_HERA2 DNA-directed RNA polymerase subunit alpha OS=Herpetosiphon
aurantiacus (strain ATCC 23779 / DSM 785) GN=rpoA PE=3
SV=1
Length = 331
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 237 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
T G LR++ +L S AA+I I DGI +EF P GV
Sbjct: 33 TLGNALRRV-LLSSIPGAAVIKIKIDGIFHEFSPIQGV 69
>sp|Q3SSU2|RPOA_NITWN DNA-directed RNA polymerase subunit alpha OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rpoA PE=3
SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLIAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|B6JEY9|RPOA_OLICO DNA-directed RNA polymerase subunit alpha OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLVAEPLERGFGQ---TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|Q1QN06|RPOA_NITHX DNA-directed RNA polymerase subunit alpha OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLIAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|Q0BYD8|RPOA_HYPNA DNA-directed RNA polymerase subunit alpha OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rpoA PE=3 SV=1
Length = 342
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 237 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
T G LR++ +L S + AA+IG+ DG+++EF GV
Sbjct: 44 TLGNALRRV-LLSSLQGAAIIGVQIDGVVHEFSAIPGV 80
>sp|Q211H2|RPOA_RHOPB DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain BisB18) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 213 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 272
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPTRFATLVAEPLERGFGQ---TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 273 GV 274
GV
Sbjct: 77 GV 78
>sp|A4YSL6|RPOA_BRASO DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium sp.
(strain ORS278) GN=rpoA PE=3 SV=1
Length = 343
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 237 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 46 TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 82
>sp|A5ELK3|RPOA_BRASB DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=rpoA PE=3 SV=1
Length = 343
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 237 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 46 TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 82
>sp|Q5GSW7|RPOA_WOLTR DNA-directed RNA polymerase subunit alpha OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=rpoA PE=3 SV=1
Length = 355
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 226 VFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
V E ALT G LR++ +L S +A+ GI DGI +EF GV
Sbjct: 36 VLEPLESGFALTLGNALRRV-MLSSLIGSAVYGIKIDGITHEFTSIQGV 83
>sp|Q5B8K7|HIR3_EMENI Histone transcription regulator 3 homolog OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=hir3 PE=3 SV=1
Length = 2061
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 75 TFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPL 121
++S+ EL NT + S TK VPP +NRR+L + TP+
Sbjct: 1168 NIKDLSKSEL--KNTIEKMQQSIGTTKAVPPVSYNRRILNAYLKTPI 1212
>sp|Q73HA9|RPOA_WOLPM DNA-directed RNA polymerase subunit alpha OS=Wolbachia pipientis
wMel GN=rpoA PE=3 SV=1
Length = 355
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 235 ALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 274
ALT G LR++ +L S + +A+ GI +G+ +EF GV
Sbjct: 45 ALTLGNALRRV-MLSSLKGSAVYGIKIEGVTHEFTSIQGV 83
>sp|Q1IS93|RPOA_KORVE DNA-directed RNA polymerase subunit alpha OS=Koribacter versatilis
(strain Ellin345) GN=rpoA PE=3 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 220 FWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVV 275
FW Q FE G T G LR++ +L S E AA+ + +G+L+EF GVV
Sbjct: 26 FWAQP--FERGFG---TTIGNALRRV-LLSSIEGAAITAVKIEGVLHEFQSIPGVV 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,214,901
Number of Sequences: 539616
Number of extensions: 7369485
Number of successful extensions: 13233
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 13225
Number of HSP's gapped (non-prelim): 27
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)