Query 015678
Match_columns 403
No_of_seqs 142 out of 174
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02818 tocopherol cyclase 100.0 7E-116 2E-120 879.5 34.5 363 26-392 22-403 (403)
2 PF14249 Tocopherol_cycl: Toco 100.0 5.7E-95 1.2E-99 721.7 32.4 321 26-361 8-336 (336)
3 PF07143 CrtC: Hydroxyneurospo 96.5 0.015 3.1E-07 57.6 9.3 57 180-239 144-204 (312)
4 PF10974 DUF2804: Protein of u 94.6 0.4 8.7E-06 48.6 11.6 110 184-303 170-285 (333)
5 COG5621 Predicted secreted hyd 46.9 3.5E+02 0.0076 28.0 12.6 62 162-237 191-256 (354)
6 PF08043 Xin: Xin repeat; Int 39.0 17 0.00038 21.4 1.0 15 137-151 1-15 (16)
7 PF10974 DUF2804: Protein of u 30.5 3.4E+02 0.0073 27.5 9.4 80 283-369 121-209 (333)
8 PF12073 DUF3553: Protein of u 16.1 5.2E+02 0.011 19.8 5.6 49 305-361 3-51 (52)
9 PF07806 Nod_GRP: Nodule-speci 15.0 70 0.0015 22.9 0.5 9 209-217 16-24 (38)
10 PF08622 Svf1: Svf1-like; Int 13.5 2.4E+02 0.0052 29.1 4.1 27 179-205 131-157 (325)
No 1
>PLN02818 tocopherol cyclase
Probab=100.00 E-value=7.1e-116 Score=879.51 Aligned_cols=363 Identities=63% Similarity=1.211 Sum_probs=350.7
Q ss_pred eeeehhhhhhccccccceEeeccccc----------------ceecceeccC-CeeeEeecCCCCceeeecCcceEEecc
Q 015678 26 LFIRWRILHLRKNYRHWKLHSMDLDL----------------QELGFKFLAP-MTSICAITLKSLQTFGEVSRHELMLGN 88 (403)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~h~~~~~~----------------~~~~~qvl~~-d~y~~~~~~~~~~Fwa~~~~~~l~lG~ 88 (403)
-+.|.+||+.+|++ .+|||+.||.. .-.++|||.. |+|+||++||+++||| ++++|+|||
T Consensus 22 Wy~rvtlpe~~qsf-~fmysiedp~~~~~~~~~~~~~~~~~~~g~~aQilg~~d~y~~~~~~~~~~Fw~--~~~~l~lg~ 98 (403)
T PLN02818 22 WYFKVSLPEVKQSF-AFMYSIEDPAFRERMSGLEELLHGSRFTGVGAQILGPDDKYLCQFTEDSTKFWG--SRHELALGN 98 (403)
T ss_pred eEEEEEcCCCCceE-EEEEEeeCCccccccccchhhcCCCCCCCceeeeecCCCceEEEeCCCcccccc--cchhccccc
Confidence 57899999999999 99999999933 2299999986 6699999999999999 999999999
Q ss_pred eecCCCCCCCCCCCCCchhhhhccccceeecccccceeeecCCCCccccccccceeeEeeeeeeeecCCCCCCCCccccc
Q 015678 89 TFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWL 168 (403)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~f~~~v~~g~q~t~~~~qG~~~d~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGwf 168 (403)
|+.++++.+.++++|+|++|+++|+||||+|++||||+|+|+++++|..||++|||+|+|+|+|||||++++|++|||||
T Consensus 99 ~~~~~~~~~~~~~~~~p~~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~~~~~~~rw~y~~~p~~gwG~~~~~~~stmGwf 178 (403)
T PLN02818 99 TFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRPVYGWGDVGSKQKSTAGWL 178 (403)
T ss_pred ccccccCCCCCcccCChHHHHHhhhcceeeccceecceecCCCCCccccccceEEEEEEeeeeeecCCCCCCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCCCcEEEEeccCCCCCCceEEEEcccccccCcc
Q 015678 169 AAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL 248 (403)
Q Consensus 169 s~LP~mEchw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l 248 (403)
++||||||||||+||||+++|+|+|||++|+|++|+||+|||||+|||++|+|+|||+|+++++ +|||++||+|+||++
T Consensus 179 s~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP~kWfWiQCN~F~~~~~-LalTagGg~r~IP~l 257 (403)
T PLN02818 179 AALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGASG-LSLTAGGGLRGLPLL 257 (403)
T ss_pred hhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCCcCeeeEecccCCCCCc-EEEEecCCcccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred -cccccEEEEEEEECCEEEEEecCCccEEEEEeeceeEEEEEEeCcEEEEEEEEe-cCCCceEeCCCCCCCccccccccc
Q 015678 249 -DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAGLAPACKDTC 326 (403)
Q Consensus 249 -~~~~~~~ligl~~~Gk~yrFaty~ga~~~~v~~~g~w~i~~~n~~~~LeI~~~~-~~~g~~LrAP~~g~~M~~~c~ES~ 326 (403)
.++++++||+|||+|++|||+||+|++.|++++|++|+|+++|++|+|+|++++ +.+++.|+||+.+.+|++.|+||+
T Consensus 258 ~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~veIe~~~~~~~g~~LrAPt~~~gM~~~crESl 337 (403)
T PLN02818 258 PGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVGLAPFCRDTF 337 (403)
T ss_pred cccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEEEEEEEEEcCCCCceEECCCCCCCCCchhhhcC
Confidence 889988899999999999999999999999999999999999999999999999 568999999998878999999999
Q ss_pred cEEEEEEEEeeecCCCCceEEEEEeeceeEEeeeCCcccccccccccchHHHhhhcccceeccccc
Q 015678 327 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF 392 (403)
Q Consensus 327 ~g~v~v~L~e~~~~g~~gklI~d~~s~~AglEiGG~pw~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 392 (403)
.|+++|+|++++++++++++|+|++|++||||+||+||+++|+++++|+|||++|+++|||||+|+
T Consensus 338 ~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~~~~~~~~~~~p~d~~~~~ 403 (403)
T PLN02818 338 AGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDVESIF 403 (403)
T ss_pred CceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccchhhHHHHhCCccchhhcC
Confidence 999999999987778888999999999999999999999999999999999999999999999985
No 2
>PF14249 Tocopherol_cycl: Tocopherol cyclase
Probab=100.00 E-value=5.7e-95 Score=721.66 Aligned_cols=321 Identities=46% Similarity=0.955 Sum_probs=300.8
Q ss_pred eeeehhhhhhccccccceEeecccccce----ecceeccC-CeeeEeecCCCCceeeecCcceEEecceecCC---CCCC
Q 015678 26 LFIRWRILHLRKNYRHWKLHSMDLDLQE----LGFKFLAP-MTSICAITLKSLQTFGEVSRHELMLGNTFRAD---KGSQ 97 (403)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~----~~~qvl~~-d~y~~~~~~~~~~Fwa~~~~~~l~lG~~~~~~---~~~~ 97 (403)
-|.|.+||+.++++ ..||++.||.... .++|||.. |+|+||++|++++||| ++++|+||+.+.+. ++++
T Consensus 8 Wy~rvtlp~~~~sf-~~mysi~dp~~~~~~~g~~aqilg~~d~y~~~~~~~~~~fw~--~~~~~~lg~~~~~~~~~~~~~ 84 (336)
T PF14249_consen 8 WYFRVTLPEIGQSF-AFMYSIEDPIGGQPYSGGAAQILGPDDKYLCRTFPDVQKFWA--SRHELALGNLFLGHWGKTDLK 84 (336)
T ss_pred eEEEEEcCCCCcEE-EEEEEEEcCCCCCCcCCceeEEecCCCeEEEEECCCCCceEE--eccccccCceeeeecccCCCC
Confidence 46799999999999 9999999998774 99999986 5699999999999999 99976666665554 4666
Q ss_pred CCCCCCCchhhhhccccceeecccccceeeecCCCCccccccccceeeEeeeeeeeecCCCCCCCCcccccccCCCCCcc
Q 015678 98 PPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPH 177 (403)
Q Consensus 98 ~~~~~l~~~~f~~~v~~g~q~t~~~~qG~~~d~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGwfs~LP~mEch 177 (403)
.++++|+|++|+++|+||||+|+++|||+|+|+++.++| ||+|+|+|+++|||++++|++|||||++||+||||
T Consensus 85 ~~~~~~~p~~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~i~p~~~wg~~~~~~~~~mGwfs~lP~~Ec~ 158 (336)
T PF14249_consen 85 PPPGYLPPQEFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYSIKPIYGWGNSGRLQKSIMGWFSFLPFFECY 158 (336)
T ss_pred CCccccChHHhHhhhhccceeccccccCCccCCCCccEE------EEEEEEcccccCCCccccCCCccchHhhccccCCC
Confidence 689999999999999999999999999999999988777 99999999999999999999999999999999999
Q ss_pred eEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCCCcEEEEeccCCCCCCceEEEEcccccccCcccccccEEEE
Q 015678 178 WQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMI 257 (403)
Q Consensus 178 w~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l~~~~~~~li 257 (403)
|||+||||+++|+|+|||++|+|++|+||+|||||+|||++|+|+|||+|+++++ ++|+++||+++||++ .+.++||
T Consensus 159 w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F~~~~~-~slt~sgg~~~i~~~--~e~~~li 235 (336)
T PF14249_consen 159 WQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSFDGEPD-VSLTASGGRRPIPGL--TESVGLI 235 (336)
T ss_pred chheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEccccCCCCC-eEEEEeecccccCcc--ccccEEE
Confidence 9999999999999999999999999999999999999999999999999999876 999999999999877 5569999
Q ss_pred EEEECCEEEEEecCCccEEEEEeeceeEEEEEEeCcEEEEEEEEecCCCceEeCCCCCCCccccccccccEEEEEEEEee
Q 015678 258 GIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWER 337 (403)
Q Consensus 258 gl~~~Gk~yrFaty~ga~~~~v~~~g~w~i~~~n~~~~LeI~~~~~~~g~~LrAP~~g~~M~~~c~ES~~g~v~v~L~e~ 337 (403)
+||++|++|||+|||+.+.++|++|++|+|+++|++|+|+|+++++.+++.|+||+.+ +|++.|+||+.|+++|+|+++
T Consensus 236 gi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~~L~AP~~~-~m~~~~rEsl~g~v~v~L~~~ 314 (336)
T PF14249_consen 236 GIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGTPLRAPTEG-GMQPRCRESLQGRVRVELWEK 314 (336)
T ss_pred EEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCcEEeCcCCC-CCchhhhccCcEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999998678999999999 999999999999999999995
Q ss_pred ecCCCCceEEEEEeeceeEEeeeC
Q 015678 338 RYDGTKGKMILDVTSDMAALEVGG 361 (403)
Q Consensus 338 ~~~g~~gklI~d~~s~~AglEiGG 361 (403)
+ ++++++|++++|++||||+||
T Consensus 315 ~--~~~g~lI~~~~s~~AGLEvGG 336 (336)
T PF14249_consen 315 K--GKKGKLIFDGTSNLAGLEVGG 336 (336)
T ss_pred c--CCCCcEEEEeecCcEEEeecC
Confidence 4 556899999999999999997
No 3
>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins. The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.
Probab=96.47 E-value=0.015 Score=57.64 Aligned_cols=57 Identities=18% Similarity=0.412 Sum_probs=42.6
Q ss_pred EeecCcceEEEEEECCEEEEecCCceeccCCCCCCC--C--CCcEEEEeccCCCCCCceEEEEc
Q 015678 180 ICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--P--RKWFWVQCNVFEGATGEVALTAG 239 (403)
Q Consensus 180 V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SF--P--~~w~W~Qcn~F~~~~~~~sLt~A 239 (403)
-++.+..++|+|+++|+.+.++ |.||.++|||... + ..|-|.+.+ +++.. ++++...
T Consensus 144 ws~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~-l~dg~-~l~~y~~ 204 (312)
T PF07143_consen 144 WSAPRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQ-LDDGR-ELMLYQL 204 (312)
T ss_dssp EEEEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEE-ETTS--EEEEEEE
T ss_pred EccccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEE-CCCCC-EEEEEEE
Confidence 3377778899999999999998 8999999999854 2 349999997 44432 2554433
No 4
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=94.58 E-value=0.4 Score=48.57 Aligned_cols=110 Identities=15% Similarity=0.350 Sum_probs=78.2
Q ss_pred CcceEEEEEECCEEEEecCCceeccCCCCCC---CCCCcEEEEeccCCCCCCceEEEEcccccccCcccccccEEEEEEE
Q 015678 184 GGLSTGWIEWDGERFEFQDAPSYSEKNWGGA---FPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIH 260 (403)
Q Consensus 184 h~~asG~I~~NGk~~dF~~g~GY~EKNWG~S---FP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l~~~~~~~ligl~ 260 (403)
.-.++|+|.++|++|+|+...++.=-|||+. +-..|-|.-++...+.-..+.|-++.|.-. +. ...| -+|.
T Consensus 170 ~~pv~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~~iG~NL~~g~~d-~t-~~tE----N~l~ 243 (333)
T PF10974_consen 170 GLPVSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGRRIGFNLGAGFND-GT-GATE----NALW 243 (333)
T ss_pred CcceEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCCEEEEEeeccccc-CC-CCcc----eEEE
Confidence 4456999999999999997666777788875 456899999988875221378888877544 21 1233 5678
Q ss_pred ECCEEEEEecCCccEEEEEee---ceeEEEEEEeCcEEEEEEEEec
Q 015678 261 YDGILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKATTK 303 (403)
Q Consensus 261 ~~Gk~yrFaty~ga~~~~v~~---~g~w~i~~~n~~~~LeI~~~~~ 303 (403)
++|+.+.+ ..+.++++. ...|+|+-.++...|+.+-..+
T Consensus 244 ~dG~~~kL----~~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~~~ 285 (333)
T PF10974_consen 244 VDGKLHKL----PPVRFEYDREDPMKPWRITSDDGRVDLTFTPIFD 285 (333)
T ss_pred ECCEEEEC----CcEEEEecCcCCCCCeEEEcCCCeEEEEEEEeee
Confidence 99999988 456676653 2469999887777666664443
No 5
>COG5621 Predicted secreted hydrolase [General function prediction only]
Probab=46.86 E-value=3.5e+02 Score=28.03 Aligned_cols=62 Identities=23% Similarity=0.522 Sum_probs=41.9
Q ss_pred CCcccccccCCCCCcceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCC----CCCCcEEEEeccCCCCCCceEEE
Q 015678 162 NSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGA----FPRKWFWVQCNVFEGATGEVALT 237 (403)
Q Consensus 162 ~~~mGwfs~LP~mEchw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~S----FP~~w~W~Qcn~F~~~~~~~sLt 237 (403)
.+-+..+-.+|+.+ ++|+|.+||+..+++ |.+..+|-||++ ==..|=|.-.. +++... +|+.
T Consensus 191 lg~Asyyyslp~~~-----------v~Gtv~v~g~t~~V~-G~AWld~Ewgs~~lA~~q~gwDwfslh-l~~ge~-Lmlf 256 (354)
T COG5621 191 LGQASYYYSLPRYE-----------VSGTVSVDGETFEVT-GLAWLDHEWGSQPLASEQVGWDWFSLH-LASGEK-LMLF 256 (354)
T ss_pred ccccceeeeeeeee-----------eeeeEEecCceeEEc-ceeeeccccccccccccccccceEEEE-cCCCcc-eeee
Confidence 34455555667533 489999999999886 899999999984 33456666544 444333 4543
No 6
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=39.03 E-value=17 Score=21.38 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=12.7
Q ss_pred cccccceeeEeeeee
Q 015678 137 ETVKSARWEYSTRPV 151 (403)
Q Consensus 137 ~~~~~~~W~~~i~p~ 151 (403)
++|.+++|-++++|.
T Consensus 1 GDV~~~~wlFEtqpl 15 (16)
T PF08043_consen 1 GDVKTTRWLFETQPL 15 (16)
T ss_pred CCcceeEEEeecccC
Confidence 367889999999986
No 7
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=30.54 E-value=3.4e+02 Score=27.54 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=52.6
Q ss_pred eeEEEE----EEeCcEEEEEEEEec--CCCceEeCCCCCCCcccccc-ccccEEEEEEEEeeecCCCCceEEEEEeecee
Q 015678 283 GYWYFA----AENQTHMVELKATTK--YPGTTLRAPTSEAGLAPACK-DTCFGELTLQLWERRYDGTKGKMILDVTSDMA 355 (403)
Q Consensus 283 g~w~i~----~~n~~~~LeI~~~~~--~~g~~LrAP~~g~~M~~~c~-ES~~g~v~v~L~e~~~~g~~gklI~d~~s~~A 355 (403)
+.++|. ...+.+.+++++..+ .+.+.+..|....+.....+ .++.++.+|++-. .+..++.....|
T Consensus 121 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~e~L~vv~P~~~~~f~yt~K~~~~pv~G~v~~g~-------~~~~~~~~~~~a 193 (333)
T PF10974_consen 121 GGRRLDVDLFGKGPGLEADLELDRPPGHEPLNVVTPWGENRFYYTQKQNGLPVSGSVRLGG-------KEYSFDPENAFA 193 (333)
T ss_pred CeEEEEEEccCCCCCEEEEEEEeCCCCCCCEEEEeecCCCCEEEEEEecCcceEEEEEECC-------EEEecCCCCcEE
Confidence 456666 567788888888743 23477889987644444444 3566777776621 134466677889
Q ss_pred EEeeeCCccc--cccc
Q 015678 356 ALEVGGGPWF--NTWK 369 (403)
Q Consensus 356 glEiGG~pw~--~~w~ 369 (403)
.|.++.+.|. ..|.
T Consensus 194 ~lD~~rG~~~~~t~W~ 209 (333)
T PF10974_consen 194 VLDWGRGYWPRETFWN 209 (333)
T ss_pred EEEcCCCccCCcCeEE
Confidence 9999998773 4555
No 8
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=16.05 E-value=5.2e+02 Score=19.83 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=33.1
Q ss_pred CCceEeCCCCCCCccccccccccEEEEEEEEeeecCCCCceEEEEEeeceeEEeeeC
Q 015678 305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG 361 (403)
Q Consensus 305 ~g~~LrAP~~g~~M~~~c~ES~~g~v~v~L~e~~~~g~~gklI~d~~s~~AglEiGG 361 (403)
||+.+|-|..-.-=.-.+.+...++++|.+-+- ||.+++ +....||...
T Consensus 3 pG~~VrHP~~pdWG~GqVqS~i~~rvTVnF~~a------GK~vI~--~~~v~L~~v~ 51 (52)
T PF12073_consen 3 PGMLVRHPDHPDWGIGQVQSNIGGRVTVNFEHA------GKKVID--GSRVALEKVF 51 (52)
T ss_pred CCCEEeCCCCCCCcceEEEEecCCeEEEeeccC------CeEEEe--ccEEEEEEcc
Confidence 788888885532225677788888888888544 677777 3456677643
No 9
>PF07806 Nod_GRP: Nodule-specific GRP repeat; InterPro: IPR012488 The region featured in this family is found repeated in a number of plant proteins, some of which are expressed specifically in nodules formed during symbiotic interactions with certain bacterial species]. Some of these proteins are also termed glycine-rich proteins (GRPs), due to the presence of a glycine-rich C-terminal region in their structures []. Bacterial infection is required for the induction of nodule-specific GRP genes, and it is thought that nodule-specific GRPs may play non-redundant roles required at specific stages of nodule development []. Members of this group of proteins may be cytosolic, whereas others are thought to be membrane-associated [].
Probab=15.00 E-value=70 Score=22.89 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 015678 209 KNWGGAFPR 217 (403)
Q Consensus 209 KNWG~SFP~ 217 (403)
.|||.||+.
T Consensus 16 RDWgGsfw~ 24 (38)
T PF07806_consen 16 RDWGGSFWG 24 (38)
T ss_pred eeccCcCcc
Confidence 589999985
No 10
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 This entry represents oxidative stress survival proteins, such as Svf1. The protein Svf1 is required for yeast survival under conditions of oxidative stress, including cold stress []. Cells deficient in Svf1 have increased levels of reactive oxygen species (ROS) under certain conditions. ; GO: 0006979 response to oxidative stress
Probab=13.46 E-value=2.4e+02 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEeecCcceEEEEEECCEEEEecCCce
Q 015678 179 QICMAGGLSTGWIEWDGERFEFQDAPS 205 (403)
Q Consensus 179 ~V~m~h~~asG~I~~NGk~~dF~~g~G 205 (403)
|+.-....++|+|..+++.++|++.+|
T Consensus 131 H~FwPR~~v~GtI~~~~~~~~~~g~~~ 157 (325)
T PF08622_consen 131 HVFWPRCKVEGTITTKGKEIDFKGVPG 157 (325)
T ss_pred EEEeeccEEEEEEEECCEEEEecCCce
Confidence 344446777999999999999997533
Done!