Query 015678
Match_columns 403
No_of_seqs 142 out of 174
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ich_A Putative ATTH; structur 94.2 0.13 4.3E-06 51.1 8.5 85 143-238 132-224 (335)
2 1nvp_C Transcription initiatio 15.0 95 0.0033 24.4 2.5 22 187-208 54-75 (76)
3 1nh2_C Transcription initiatio 13.1 1.1E+02 0.0039 24.1 2.5 22 187-208 56-77 (79)
4 2vgp_C Inner centromere protei 7.3 1E+02 0.0036 21.6 0.3 29 367-395 3-31 (43)
5 4gs4_A Alpha-tubulin N-acetylt 5.6 2.3E+02 0.0078 26.8 1.7 11 2-12 95-105 (240)
6 1h8g_A Major autolysin; cholin 5.5 4.4E+02 0.015 20.5 3.2 23 188-210 36-58 (95)
7 4h6u_A Alpha-tubulin N-acetylt 5.4 2.5E+02 0.0084 25.8 1.7 11 2-12 89-99 (200)
8 4esn_A Hypothetical protein; p 5.2 1.2E+03 0.041 18.8 6.0 46 255-303 18-63 (104)
9 4b5o_A Alpha-tubulin N-acetylt 5.1 2.6E+02 0.0089 25.7 1.6 11 2-12 95-105 (200)
10 1mj4_A Sulfite oxidase; cytoch 5.0 3.6E+02 0.012 20.5 2.3 14 189-202 22-35 (82)
No 1
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=94.21 E-value=0.13 Score=51.07 Aligned_cols=85 Identities=13% Similarity=0.356 Sum_probs=55.6
Q ss_pred eeeEeeee---eeeecCCCCCCCCcccccccCCCCCc-ceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCC-
Q 015678 143 RWEYSTRP---VYGWGNVGSKQNSTAGWLAAFPVFEP-HWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR- 217 (403)
Q Consensus 143 ~W~~~i~p---~~gwG~~~~~~~~~mGwfs~LP~mEc-hw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~- 217 (403)
.-+++++| .+--|+.+..+++..| ++ -+..+..+-.++|+|+++|+.+.++ |.+..++.||+++..
T Consensus 132 ~~dL~l~~~~P~vl~G~~G~s~k~~~~--------~~aSyYyS~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~ 202 (335)
T 2ich_A 132 TLTFILTPSQPLMLQGENGFSRKGPGA--------PQASYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDP 202 (335)
T ss_dssp EEEEEEECCSCCEECTBTTEEECSSST--------TCEEEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCT
T ss_pred EEEEEEecCCCceEeCCCceECcCCCC--------CceeEEEecccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCC
Confidence 34555543 4445665554444433 21 1223333445799999999999996 789999999999866
Q ss_pred ---CcEEEEeccCCCCCCceEEEE
Q 015678 218 ---KWFWVQCNVFEGATGEVALTA 238 (403)
Q Consensus 218 ---~w~W~Qcn~F~~~~~~~sLt~ 238 (403)
.|=|..-+ +++... +|+..
T Consensus 203 ~q~GWDWf~l~-Lddg~~-Lm~~~ 224 (335)
T 2ich_A 203 NAAGWDWISAN-LDDGSA-LMAFQ 224 (335)
T ss_dssp TEEEEEEEEEE-ETTSCE-EEEEE
T ss_pred CCCceEEEEEE-cCCCCc-EEEEE
Confidence 78898776 555443 66654
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=14.96 E-value=95 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.3
Q ss_pred eEEEEEECCEEEEecCCceecc
Q 015678 187 STGWIEWDGERFEFQDAPSYSE 208 (403)
Q Consensus 187 asG~I~~NGk~~dF~~g~GY~E 208 (403)
-.|-+.+||+.|-|..+.|-.|
T Consensus 54 KdGim~ingkdy~F~ka~GE~e 75 (76)
T 1nvp_C 54 KDGIMNLNGRDYIFSKAIGDAE 75 (76)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE
T ss_pred eccEEEECCEEEEEeccceeec
Confidence 3789999999999998877543
No 3
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=13.10 E-value=1.1e+02 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.4
Q ss_pred eEEEEEECCEEEEecCCceecc
Q 015678 187 STGWIEWDGERFEFQDAPSYSE 208 (403)
Q Consensus 187 asG~I~~NGk~~dF~~g~GY~E 208 (403)
-.|-+.+||+.|-|..+.|-.|
T Consensus 56 KdGi~~ingkDy~F~ka~GE~e 77 (79)
T 1nh2_C 56 KDGVVTINRNDYTFQKAQVEAE 77 (79)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE
T ss_pred eeeEEEECCEEEEEecccEEEE
Confidence 3889999999999998877544
No 4
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=7.27 E-value=1e+02 Score=21.55 Aligned_cols=29 Identities=24% Similarity=0.653 Sum_probs=19.1
Q ss_pred cccccccchHHHhhhcccceecccccCCC
Q 015678 367 TWKAKTATPELLRRTLNVPVDVDGLFGFV 395 (403)
Q Consensus 367 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (403)
+|-......+.|++-.--|.|+|.+|+.+
T Consensus 3 ~WA~~~~L~~~l~~Q~~~p~D~d~iFG~I 31 (43)
T 2vgp_C 3 AWASGNLLTQAIRQQYYKPIDVDRMYGTI 31 (43)
T ss_dssp GGGSHHHHHHHHHHHHHSCCCHHHHTTTS
T ss_pred cccchHHHHHHHHHHHccCCCHHHHcCCC
Confidence 35555556666666543377999999874
No 5
>4gs4_A Alpha-tubulin N-acetyltransferase; acetyl coenzyme A binding, cytosolic; HET: ACO; 2.11A {Homo sapiens}
Probab=5.59 E-value=2.3e+02 Score=26.77 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=9.0
Q ss_pred cceeeEEEeee
Q 015678 2 GVLVGFLRVGI 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
|+++|||+||.
T Consensus 95 ~~v~G~LKvG~ 105 (240)
T 4gs4_A 95 GAIIGFIKVGY 105 (240)
T ss_dssp -CEEEEEEEEE
T ss_pred eeEEEEEEEee
Confidence 68999999985
No 6
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=5.51 E-value=4.4e+02 Score=20.46 Aligned_cols=23 Identities=17% Similarity=0.487 Sum_probs=11.9
Q ss_pred EEEEEECCEEEEecCCceeccCC
Q 015678 188 TGWIEWDGERFEFQDAPSYSEKN 210 (403)
Q Consensus 188 sG~I~~NGk~~dF~~g~GY~EKN 210 (403)
+|++.+||+-|=|+...|.+-+|
T Consensus 36 tGW~~~~g~wYY~~~~~G~m~~~ 58 (95)
T 1h8g_A 36 TGWVKYKDTWYYLDAKEGAMVSN 58 (95)
T ss_dssp CEEEEETTEEEEECTTTCCBCCS
T ss_pred cCEEEECCeEEeEcCCCCcEEeC
Confidence 55555566555555334444444
No 7
>4h6u_A Alpha-tubulin N-acetyltransferase; tubulin acetyltransferase; HET: ACO; 2.45A {Danio rerio} PDB: 4h6z_A*
Probab=5.40 E-value=2.5e+02 Score=25.82 Aligned_cols=11 Identities=73% Similarity=1.386 Sum_probs=9.8
Q ss_pred cceeeEEEeee
Q 015678 2 GVLVGFLRVGI 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
|+++|||+||.
T Consensus 89 ~~v~G~LKvG~ 99 (200)
T 4h6u_A 89 GVIVGFLKVGY 99 (200)
T ss_dssp CEEEEEEEEEE
T ss_pred eEEEEEEEEee
Confidence 68999999995
No 8
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=5.21 E-value=1.2e+03 Score=18.77 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=32.8
Q ss_pred EEEEEEECCEEEEEecCCccEEEEEeeceeEEEEEEeCcEEEEEEEEec
Q 015678 255 AMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303 (403)
Q Consensus 255 ~ligl~~~Gk~yrFaty~ga~~~~v~~~g~w~i~~~n~~~~LeI~~~~~ 303 (403)
..+.+..+|+.|.=.+.+..+..++. |.-.|.+++++.++. ++.|+
T Consensus 18 ~~avI~vdGk~~~~i~L~~~~~i~i~--g~n~IeI~dg~vrv~-es~CP 63 (104)
T 4esn_A 18 QGAVVTVDGEVYGTYSLAKDQTIEIQ--DGNRLRIQNGQAKME-WADCP 63 (104)
T ss_dssp CEEEEEETTEEEEEEETTSCEEEEET--TTEEEEEETTEEEEE-EECCS
T ss_pred CEEEEEECCEEEEEEECCCCcEEEEC--CcEEEEEECCEEEEE-ECCCC
Confidence 34558999998877777666666666 556788888887765 55554
No 9
>4b5o_A Alpha-tubulin N-acetyltransferase; microtubules, cilium, intraflagellar transport; HET: ACO; 1.05A {Homo sapiens} PDB: 4b5p_A*
Probab=5.05 E-value=2.6e+02 Score=25.67 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=8.0
Q ss_pred cceeeEEEeee
Q 015678 2 GVLVGFLRVGI 12 (403)
Q Consensus 2 ~~~~~~~~~~~ 12 (403)
|+++|||+||.
T Consensus 95 ~~v~G~LKvG~ 105 (200)
T 4b5o_A 95 GAIIGFIKVGY 105 (200)
T ss_dssp --EEEEEEEEE
T ss_pred ceEEEEEEEee
Confidence 57899999985
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=5.02 E-value=3.6e+02 Score=20.47 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEECCEEEEecC
Q 015678 189 GWIEWDGERFEFQD 202 (403)
Q Consensus 189 G~I~~NGk~~dF~~ 202 (403)
-||.++|+.||+++
T Consensus 22 ~wv~i~g~VYDvt~ 35 (82)
T 1mj4_A 22 IWVTLGSEVFDVTE 35 (82)
T ss_dssp EEEEETTEEEECTT
T ss_pred eEEEECCEEEEchH
Confidence 59999999999985
Done!