BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015679
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/415 (59%), Positives = 307/415 (73%), Gaps = 24/415 (5%)
Query: 7 PLKFSGFFCRFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE 66
P SG F+ ++L EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE
Sbjct: 112 PSSISGDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE 171
Query: 67 CPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIF 126
CPACR HCASRRSLRDDP +DALI+AL+ +ID YEEEELAFHE+E RNKQIQASIA+I
Sbjct: 172 CPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQIS 231
Query: 127 QRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQ--GSEDNEDENDDN 184
QRQSEALVKRR+ GK+ A R+PR A RRR + Q SE +ED+++D+
Sbjct: 232 QRQSEALVKRRSLGKEAAVLM-----RSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDD 286
Query: 185 ----GGKDSSSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRESR 238
G SS+DER EVR ++R++RS RS+Q PSSS AN ++G C +ND EV R+++
Sbjct: 287 NNNRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTK 346
Query: 239 GISPGLVWNPEMLAWGRGGTRSNTRHG-SASGCNSKSSRSTRLNKLVEYLR-SLQENNDE 296
GISPGLVWNPE+LAWGRGGTRSNTRHG + SG +SKS R+ R+NKLVEYLR S+ ++ E
Sbjct: 347 GISPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVE 406
Query: 297 LDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLD- 355
LD+ + LVS DT+C P L QPYLCC+P+L VKQL E+V+LQ L+ EEVE+L+ + R+
Sbjct: 407 LDIHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRRRVGE 466
Query: 356 --AKGNQSTPIPTT-----DQLQILEGQETLAGLRVNH-TSNTDHLILAYRQKQS 402
A N P + D++ LE ETL+ L+++ +S+ HLI+AYR+KQ+
Sbjct: 467 DAAIENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQT 521
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/387 (54%), Positives = 278/387 (71%), Gaps = 19/387 (4%)
Query: 17 FVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76
++ V+L +I KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCAS
Sbjct: 89 YMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCAS 148
Query: 77 RRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKR 136
RRSLRDDPN+DALI+AL+ +IDK+EEEEL F +++ RNKQIQASIA++ QRQS+ALVKR
Sbjct: 149 RRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKR 208
Query: 137 RTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERS 196
++ GK TA + RRRRN R E SE N+D++ + GKDSSS+
Sbjct: 209 KSVGKGTA----ILSRSRRSGGGSRRRRNCRNIEQDTSEANDDDDQNKRGKDSSSD---- 260
Query: 197 AEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLEVG--RESRGISPGLVWNPEMLAWG 254
E R+RK+RS ++QPSSS AN++ C N E R+SR ISP LVWN E++AWG
Sbjct: 261 -EPCERQRKKRS---ATQPSSSNANNNDNCAGNGTEQTHQRDSRVISPVLVWNSELIAWG 316
Query: 255 RGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSL 314
RGGTRSNTR G+ + + S R+ RL +LVEYL SL+ N+ ELD+ L LVS DT+ +L
Sbjct: 317 RGGTRSNTRQGNNNQ-GAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNL 375
Query: 315 QQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILE 374
+PYLC +P+L VKQL EYV+ L+AEEVE+L+ K+ GN++ +T+++Q L+
Sbjct: 376 HEPYLCFRPTLLVKQLREYVARHLKLKAEEVELLVSKDGDTVIGNKT----STEKMQSLQ 431
Query: 375 GQETLAGLRVNHTSNTDHLILAYRQKQ 401
ET+A L+V+ S+ ++I+ YR+KQ
Sbjct: 432 DDETVAKLKVDCISSNGYMIVVYRRKQ 458
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 123/265 (46%), Gaps = 39/265 (14%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 142
N+DALIS +YP D+YE ++ + R N+Q + +SI + + Q+
Sbjct: 102 NFDALISKIYPSRDEYEAHQDRVLAKLNRLHNQQALSSSIEEGLKMQA------------ 149
Query: 143 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 202
M R QR + H S T G EDN D SN E R
Sbjct: 150 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAGPS---R 196
Query: 203 RRKRRSGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNT 262
+R R S ++P S +GG D G E+ G LV+ L + G S T
Sbjct: 197 KRSRASEDSGAEPDLS---HEGGVRSPDPPGGGET-GSEIELVFRAHPLLVEKDG-YSQT 251
Query: 263 RHGSASGCNSKSSRSTRLNKLVEYL 287
R+ K++ + ++ L +YL
Sbjct: 252 RY-------VKTTANATVDHLSKYL 269
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 98/213 (46%), Gaps = 42/213 (19%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 41 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 100
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 142
N+DALIS +YP D+YE ++ + R N+Q + +SI + + Q+
Sbjct: 101 NFDALISKIYPSRDEYEAHQDRVLAKLSRLHNQQALSSSIEEGLKMQA------------ 148
Query: 143 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 202
M R QR + H S T G EDN D SN E P
Sbjct: 149 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAG----PS 194
Query: 203 RRKRRS--------------GIRSSQPSSSAAN 221
R++ R+ G+RS P N
Sbjct: 195 RKRSRASEDSGAEPDLSHEGGVRSPDPPGGGEN 227
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 18 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 77
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 78 RSLRDDPNYDALISALYPDIDKYE 101
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 18 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 77
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 78 RSLRDDPNYDALISALYPDIDKYE 101
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 18 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 77
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 78 RSLRDDPNYDALISALYPDIDKYE 101
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 18 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 77
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 78 RSLRDDPNYDALISALYPDIDKYEEEE 104
RSLR DPN+DALIS +YP D+YE +
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYEAHQ 124
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 45 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 104
Query: 85 NYDALISALYPDIDKYE 101
N+DALIS +YP D+YE
Sbjct: 105 NFDALISKIYPSRDEYE 121
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 140 GKD 142
G D
Sbjct: 162 GSD 164
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 161
Query: 140 GKD 142
G D
Sbjct: 162 GSD 164
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 140 GKD 142
G D
Sbjct: 162 GSD 164
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 140 GKD 142
G D
Sbjct: 162 GSD 164
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 140 GKD 142
G D
Sbjct: 133 GSD 135
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 140 GKD 142
G D
Sbjct: 133 GSD 135
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 140 GKD 142
G D
Sbjct: 133 GSD 135
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 85 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 139
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 140 GKD 142
G D
Sbjct: 133 GSD 135
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84
+ ++ CPICL ++KKT T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 40 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADP 99
Query: 85 NYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQS-EALVKRRTPGKDT 143
N+D LIS +YP ++YE A E+ +AK Q QS +ALV G
Sbjct: 100 NFDLLISKIYPSREEYE----AIQEK----------VMAKFNQTQSQQALVNSINEGIKL 145
Query: 144 ASPFMTRPQR 153
S RPQR
Sbjct: 146 QS--QNRPQR 153
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 81
L + ++++CPICL + + + C H FC CI KSM++ + CP C+ RR +R
Sbjct: 7 LERMGRELKCPICLSLYN-SAVSLSCNHVFCNACIVKSMKM-DATCPVCKIP-YHRREIR 63
Query: 82 DDPNYDALISALYPDID 98
P+ D+L+S +Y +++
Sbjct: 64 GAPHMDSLVS-IYKNME 79
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRS 79
L ++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 LHAMQKILECPICLELIKEPVST-QCDHIFCKFCMLKLLNQKKGPSQCPLCKNEI-TKRS 72
Query: 80 LRDDPNYDALISALYPDIDKYE 101
L+ + L+ L ID +E
Sbjct: 73 LQGSARFSQLVEELLKIIDAFE 94
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3
PE=1 SV=1
Length = 242
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 71
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3
PE=2 SV=1
Length = 241
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 71
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 71
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRS 79
L ++K ++CPICL +IK+ + +C H FC+ C+ K + R G ++CP C+ ++RS
Sbjct: 15 LNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQRKGPSQCPLCKNDI-TKRS 72
Query: 80 LRDDPNYDALISALYPDIDKYE 101
L++ + L+ L I +E
Sbjct: 73 LQESTRFSQLVEELLKIIHAFE 94
>sp|O55735|121R_IIV6 Putative RING finger protein 121R OS=Invertebrate iridescent
virus 6 GN=IIV6-121R PE=4 SV=1
Length = 89
Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 71
+E+ ++K+V CPICL I K TV+EC H C C+ K N CP CR
Sbjct: 34 IEIENVKKNVLCPICL--IAKVNTVLECTHVLCSNCVKKI-----NVCPICR 78
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis
GN=pcgf3 PE=2 SV=1
Length = 242
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 71
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR- 78
+++ E+ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65
Query: 79 --SLRDDPNYDALISALYPDIDKYE 101
S+R D ++ L P + K E
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRS 79
L ++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 LNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRS 72
Query: 80 LRDDPNYDALISALYPDIDKYE 101
L++ + L+ L I +E
Sbjct: 73 LQESTRFSQLVEELLKIIHAFE 94
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECI-DKSMRLGNNECPACRTHCA--SRRSL 80
E++ + CPIC K T+ ECLH FCR CI +K + N CP C + L
Sbjct: 9 EVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKL 68
Query: 81 RDDPNYDALISALY 94
R D + L +Y
Sbjct: 69 RSDCTWQDLKLKIY 82
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR- 78
+++ E+ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65
Query: 79 --SLRDDPNYDALISALYPDIDKYE 101
S+R D ++ L P + K E
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 82
++K ++CPICL +IK+ + +C H FCR C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCRFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 83 DPNYDALISALYPDIDKYE 101
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIIHAFQ 94
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPN 85
+ C IC G + K V ECLH FC+ CI + +NECP C LR D
Sbjct: 16 ITCSICRGYLIKPTAVTECLHTFCKSCIVQHFE-ESNECPECGIQVHETNPLEMLRLDKT 74
Query: 86 YDALISALYPDIDKYEEEELAFHEEERTRNKQIQAS 121
+ +I L P + + EE + E E R +I+++
Sbjct: 75 LEEIIFKLVPGLREKEEHQ----ESEFWRKHKIKSN 106
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 73
P++ KD+ CPIC+ IIK + C H FC CI +R ++CP C H
Sbjct: 44 PDLDKDLLCPICMQIIKDA-FLTACGHSFCYMCIITHLR-NKSDCPCCSQH 92
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE--CPACR 71
+ +PE++ +QCPICL + K+ +++C H +C++C+D + ++E CP CR
Sbjct: 5 LTVPELQDQLQCPICLEVFKEP-LMLQCGHSYCKDCLDNLSQHLDSELCCPVCR 57
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG---NNECPACRTHCASRR 78
L ++K+ +CPICL + TV EC H FCR CI K G + CP CR C R
Sbjct: 7 LARLQKETKCPICLDDLTDPVTV-ECGHNFCRSCI-KDFWAGQQATSSCPVCRHQC-QHR 63
Query: 79 SLRDDPNYDALI 90
+LR + +I
Sbjct: 64 NLRSNAQLGNMI 75
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 82
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 83 DPNYDALISALYPDI 97
+ L+ L I
Sbjct: 76 STRFSQLVEELLKII 90
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 82
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 83 DPNYDALISAL 93
+ L+ L
Sbjct: 76 STRFSQLVEEL 86
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 82
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 83 DPNYDALISALYPDI 97
+ L+ L I
Sbjct: 76 STRFSQLVEELLKII 90
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 82
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 83 DPNYDALISALYPDI 97
+ L+ L I
Sbjct: 76 STRFSQLVEELLKII 90
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana
GN=DRIP1 PE=1 SV=2
Length = 421
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 17 FVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE-CPACRTHCA 75
+ V+ +R + C IC I++ T+ ECLH FCR+CI + + E CP C
Sbjct: 2 MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61
Query: 76 SR--RSLRDDPNYDALISALY 94
S LR D N L + ++
Sbjct: 62 STPLEKLRPDHNLQDLRAKIF 82
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5 PE=1
SV=1
Length = 256
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPN 85
+ C IC G + K TV ECLH FC+ CI + +N+CP C LR D
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFE-DSNDCPRCGNQVHETNPLEMLRLDNT 74
Query: 86 YDALISALYPDIDKYEEEELAFHEEERTRNK 116
+ +I L P + E+EL E +NK
Sbjct: 75 LEEIIFKLVPGL---REQELERESEFWKKNK 102
>sp|Q3UK78|PCGF5_MOUSE Polycomb group RING finger protein 5 OS=Mus musculus GN=Pcgf5 PE=2
SV=1
Length = 256
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPN 85
+ C IC G + K TV ECLH FC+ CI + +N+CP C LR D
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFE-DSNDCPRCGNQVHETNPLEMLRLDNT 74
Query: 86 YDALISALYPDIDKYE-EEELAFHEEERTRNKQIQASIAKI 125
+ +I L P + + E + EL F ++ + + Q I+K+
Sbjct: 75 LEEIIFKLVPGLREQELQRELEFWKKNKPQENG-QDDISKV 114
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 79
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDAATIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 80 L---RDDPNYDALISALYPDIDKYE 101
L R D ++ L P + K E
Sbjct: 66 LLNIRADKTLQDIVYKLVPGLFKGE 90
>sp|A0JN86|PCGF5_BOVIN Polycomb group RING finger protein 5 OS=Bos taurus GN=PCGF5 PE=2
SV=1
Length = 255
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPN 85
+ C IC G + K TV ECLH FC+ CI + +N+CP C LR D
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFE-DSNDCPRCGNQVHETNPLEMLRLDNT 74
Query: 86 YDALISALYPDIDKYEEEELAFHEEER 112
+ +I L P + + E E F ++ +
Sbjct: 75 LEEIIFKLVPGLREQLERESEFWKKNK 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,942,845
Number of Sequences: 539616
Number of extensions: 6236410
Number of successful extensions: 35273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 757
Number of HSP's that attempted gapping in prelim test: 32971
Number of HSP's gapped (non-prelim): 2616
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)