Query 015679
Match_columns 403
No_of_seqs 228 out of 1579
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 7.5E-38 1.6E-42 306.4 10.8 346 6-402 22-379 (381)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 8.7E-12 1.9E-16 88.8 2.6 39 31-70 1-42 (42)
3 TIGR00599 rad18 DNA repair pro 99.2 5.2E-11 1.1E-15 121.8 7.1 69 22-93 20-88 (397)
4 smart00504 Ubox Modified RING 99.1 6.8E-11 1.5E-15 90.0 4.0 61 28-91 1-61 (63)
5 PF14835 zf-RING_6: zf-RING of 99.0 5.2E-11 1.1E-15 91.6 1.3 63 24-90 3-65 (65)
6 PLN03208 E3 ubiquitin-protein 99.0 3.9E-10 8.5E-15 104.7 4.1 55 21-76 11-80 (193)
7 PF04564 U-box: U-box domain; 99.0 3.7E-10 7.9E-15 89.6 3.1 66 27-94 3-68 (73)
8 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.8E-10 6.2E-15 79.4 2.1 39 31-70 1-39 (39)
9 KOG0287 Postreplication repair 98.9 6.7E-10 1.5E-14 109.7 2.0 69 22-93 17-85 (442)
10 PF00097 zf-C3HC4: Zinc finger 98.8 2.2E-09 4.7E-14 75.2 2.4 40 31-70 1-41 (41)
11 KOG2177 Predicted E3 ubiquitin 98.8 1.5E-09 3.3E-14 102.3 1.5 87 22-113 7-105 (386)
12 PF13639 zf-RING_2: Ring finge 98.8 2E-09 4.2E-14 76.9 0.9 41 30-71 2-44 (44)
13 cd00162 RING RING-finger (Real 98.7 7.1E-09 1.5E-13 72.2 3.0 44 30-73 1-44 (45)
14 PF13920 zf-C3HC4_3: Zinc fing 98.7 5.9E-09 1.3E-13 76.5 2.2 47 27-75 1-48 (50)
15 PHA02929 N1R/p28-like protein; 98.7 8.5E-09 1.9E-13 99.1 3.7 50 26-76 172-228 (238)
16 KOG0320 Predicted E3 ubiquitin 98.7 1.5E-08 3.3E-13 92.5 3.7 48 27-76 130-179 (187)
17 COG5432 RAD18 RING-finger-cont 98.7 1.8E-08 3.8E-13 98.0 4.3 66 23-91 20-85 (391)
18 KOG0317 Predicted E3 ubiquitin 98.6 1.3E-08 2.7E-13 99.1 3.0 49 26-76 237-285 (293)
19 KOG2660 Locus-specific chromos 98.6 1.4E-08 3.1E-13 100.3 2.7 79 19-98 6-87 (331)
20 KOG0823 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 95.3 2.3 49 27-76 46-96 (230)
21 TIGR00570 cdk7 CDK-activating 98.5 4E-07 8.7E-12 90.3 10.1 49 28-76 3-55 (309)
22 smart00184 RING Ring finger. E 98.5 7.5E-08 1.6E-12 64.6 2.5 39 31-70 1-39 (39)
23 PHA02926 zinc finger-like prot 98.5 1E-07 2.2E-12 90.0 3.2 53 24-76 166-231 (242)
24 PF14634 zf-RING_5: zinc-RING 98.4 1.5E-07 3.1E-12 67.5 2.7 42 30-72 1-44 (44)
25 PF13445 zf-RING_UBOX: RING-ty 98.4 8E-08 1.7E-12 68.9 1.2 36 31-68 1-43 (43)
26 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 98.4 2.5 48 28-76 186-237 (513)
27 PF12678 zf-rbx1: RING-H2 zinc 98.3 3E-07 6.6E-12 73.0 2.7 41 30-71 21-73 (73)
28 COG5574 PEX10 RING-finger-cont 98.2 4.1E-07 8.9E-12 87.7 2.0 50 26-76 213-263 (271)
29 KOG4628 Predicted E3 ubiquitin 98.1 1.6E-06 3.5E-11 87.3 2.6 48 29-76 230-279 (348)
30 KOG0978 E3 ubiquitin ligase in 98.0 1.3E-06 2.8E-11 94.6 0.5 60 19-80 634-693 (698)
31 COG5540 RING-finger-containing 98.0 2.8E-06 6E-11 83.4 2.2 48 29-76 324-373 (374)
32 KOG0824 Predicted E3 ubiquitin 97.9 5.7E-06 1.2E-10 81.2 2.3 48 28-76 7-54 (324)
33 KOG4159 Predicted E3 ubiquitin 97.8 7.4E-06 1.6E-10 84.3 2.3 55 20-76 76-130 (398)
34 COG5152 Uncharacterized conser 97.7 1.6E-05 3.5E-10 74.0 2.3 60 27-90 195-254 (259)
35 KOG0802 E3 ubiquitin ligase [P 97.7 1.4E-05 3.1E-10 85.6 1.2 47 27-75 290-341 (543)
36 KOG0297 TNF receptor-associate 97.6 3.4E-05 7.4E-10 79.6 3.5 57 23-80 16-72 (391)
37 PF12861 zf-Apc11: Anaphase-pr 97.6 3.8E-05 8.1E-10 62.8 2.7 49 27-75 20-82 (85)
38 COG5243 HRD1 HRD ubiquitin lig 97.6 3.5E-05 7.5E-10 77.7 2.7 47 26-74 285-344 (491)
39 PF11789 zf-Nse: Zinc-finger o 97.6 3.2E-05 6.9E-10 58.7 1.9 44 26-69 9-53 (57)
40 COG5222 Uncharacterized conser 97.6 5.4E-05 1.2E-09 74.4 3.7 44 29-72 275-318 (427)
41 KOG2879 Predicted E3 ubiquitin 97.4 9.6E-05 2.1E-09 71.9 2.8 50 26-75 237-287 (298)
42 KOG1813 Predicted E3 ubiquitin 97.1 0.00027 5.9E-09 69.5 2.1 46 29-76 242-287 (313)
43 KOG0804 Cytoplasmic Zn-finger 97.0 0.00023 5.1E-09 73.3 1.2 47 24-73 171-220 (493)
44 KOG1645 RING-finger-containing 96.9 0.0011 2.3E-08 67.9 5.0 55 28-83 4-63 (463)
45 KOG1039 Predicted E3 ubiquitin 96.9 0.00047 1E-08 69.9 2.0 50 26-75 159-221 (344)
46 KOG1002 Nucleotide excision re 96.6 0.00089 1.9E-08 70.3 1.5 52 24-76 532-587 (791)
47 KOG0828 Predicted E3 ubiquitin 96.6 0.00099 2.2E-08 69.5 1.7 50 26-75 569-634 (636)
48 PF11793 FANCL_C: FANCL C-term 96.3 0.00082 1.8E-08 53.0 -0.5 49 28-76 2-67 (70)
49 KOG4172 Predicted E3 ubiquitin 96.3 0.0011 2.4E-08 49.8 0.2 46 29-75 8-54 (62)
50 KOG4739 Uncharacterized protei 96.3 0.012 2.6E-07 56.6 7.0 45 29-76 4-49 (233)
51 KOG1734 Predicted RING-contain 96.2 0.0013 2.7E-08 64.2 0.2 48 28-76 224-282 (328)
52 COG5219 Uncharacterized conser 96.1 0.0019 4.1E-08 71.8 1.1 49 27-75 1468-1523(1525)
53 KOG0825 PHD Zn-finger protein 96.1 0.0015 3.2E-08 71.3 -0.0 49 27-76 122-172 (1134)
54 PF14570 zf-RING_4: RING/Ubox 96.1 0.0059 1.3E-07 44.8 2.9 44 31-74 1-47 (48)
55 KOG0827 Predicted E3 ubiquitin 95.8 0.0053 1.1E-07 62.6 2.2 47 29-75 5-56 (465)
56 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.011 2.5E-07 57.7 4.3 59 25-85 110-171 (260)
57 KOG4367 Predicted Zn-finger pr 95.7 0.0038 8.1E-08 64.4 0.9 35 25-60 1-35 (699)
58 KOG3800 Predicted E3 ubiquitin 95.6 0.0095 2.1E-07 58.7 3.0 47 30-76 2-52 (300)
59 KOG4265 Predicted E3 ubiquitin 95.5 0.006 1.3E-07 61.7 1.6 47 28-76 290-337 (349)
60 KOG1785 Tyrosine kinase negati 95.5 0.0057 1.2E-07 62.6 1.3 48 30-78 371-419 (563)
61 KOG4692 Predicted E3 ubiquitin 95.5 0.0071 1.5E-07 61.0 2.0 48 26-75 420-467 (489)
62 smart00744 RINGv The RING-vari 95.1 0.015 3.2E-07 42.7 2.1 41 30-71 1-49 (49)
63 PF11816 DUF3337: Domain of un 95.0 0.036 7.7E-07 56.1 5.5 100 283-401 198-330 (331)
64 COG5220 TFB3 Cdk activating ki 94.8 0.028 6.2E-07 54.1 3.6 47 28-74 10-63 (314)
65 KOG4445 Uncharacterized conser 94.7 0.0072 1.6E-07 59.8 -0.5 54 23-76 110-187 (368)
66 COG5194 APC11 Component of SCF 94.4 0.025 5.3E-07 45.8 1.9 30 46-76 53-82 (88)
67 KOG3039 Uncharacterized conser 94.4 0.028 6E-07 54.4 2.5 49 27-76 220-271 (303)
68 KOG1493 Anaphase-promoting com 94.1 0.011 2.4E-07 47.4 -0.6 46 30-75 22-81 (84)
69 KOG4185 Predicted E3 ubiquitin 94.0 0.032 7E-07 55.0 2.3 61 29-90 4-74 (296)
70 PF05290 Baculo_IE-1: Baculovi 93.8 0.048 1E-06 48.2 2.7 50 27-76 79-133 (140)
71 PF14447 Prok-RING_4: Prokaryo 93.7 0.044 9.5E-07 41.3 2.0 47 26-76 5-51 (55)
72 KOG1001 Helicase-like transcri 93.7 0.027 6E-07 62.1 1.3 46 29-76 455-501 (674)
73 KOG1941 Acetylcholine receptor 93.6 0.01 2.2E-07 60.7 -2.1 66 10-75 347-416 (518)
74 COG5175 MOT2 Transcriptional r 93.6 0.035 7.7E-07 55.9 1.7 48 29-76 15-65 (480)
75 KOG1571 Predicted E3 ubiquitin 93.2 0.037 8E-07 56.1 1.2 45 26-75 303-347 (355)
76 KOG4275 Predicted E3 ubiquitin 92.9 0.018 3.9E-07 56.9 -1.4 42 28-75 300-342 (350)
77 KOG0826 Predicted E3 ubiquitin 92.5 0.051 1.1E-06 54.5 1.1 46 28-74 300-345 (357)
78 KOG2930 SCF ubiquitin ligase, 92.3 0.069 1.5E-06 45.2 1.4 27 46-73 80-106 (114)
79 KOG4362 Transcriptional regula 92.1 0.055 1.2E-06 59.2 0.8 67 23-91 16-84 (684)
80 cd01612 APG12_C Ubiquitin-like 91.7 0.63 1.4E-05 38.3 6.5 81 299-400 2-83 (87)
81 KOG2114 Vacuolar assembly/sort 91.7 0.077 1.7E-06 59.0 1.4 41 28-72 840-880 (933)
82 cd01611 GABARAP Ubiquitin doma 91.3 0.52 1.1E-05 40.6 5.8 84 299-401 25-109 (112)
83 KOG3002 Zn finger protein [Gen 90.8 0.14 3E-06 51.3 2.1 48 25-76 45-92 (299)
84 KOG3161 Predicted E3 ubiquitin 90.7 0.12 2.6E-06 55.9 1.6 41 24-68 7-51 (861)
85 PF10367 Vps39_2: Vacuolar sor 90.6 0.081 1.8E-06 43.8 0.2 35 24-58 74-109 (109)
86 KOG2817 Predicted E3 ubiquitin 90.6 0.19 4.1E-06 51.7 2.9 50 24-74 330-384 (394)
87 PF02891 zf-MIZ: MIZ/SP-RING z 90.6 0.14 3.1E-06 37.7 1.4 44 29-73 3-50 (50)
88 PF07800 DUF1644: Protein of u 90.3 0.22 4.8E-06 45.3 2.7 34 27-61 1-47 (162)
89 KOG1814 Predicted E3 ubiquitin 90.2 0.12 2.6E-06 53.4 1.1 47 27-73 183-238 (445)
90 KOG3039 Uncharacterized conser 89.3 0.24 5.1E-06 48.2 2.2 40 21-61 36-75 (303)
91 PHA03096 p28-like protein; Pro 89.2 0.19 4.2E-06 50.0 1.6 44 29-72 179-231 (284)
92 PF08746 zf-RING-like: RING-li 88.8 0.35 7.5E-06 34.6 2.3 40 31-70 1-43 (43)
93 COG5236 Uncharacterized conser 88.4 0.36 7.9E-06 49.0 2.9 48 26-74 59-107 (493)
94 KOG2932 E3 ubiquitin ligase in 88.3 0.22 4.7E-06 49.9 1.2 44 29-75 91-134 (389)
95 KOG0298 DEAD box-containing he 88.1 0.11 2.3E-06 60.2 -1.1 51 23-74 1148-1198(1394)
96 PF02991 Atg8: Autophagy prote 87.7 1.1 2.5E-05 38.0 5.1 83 299-399 17-99 (104)
97 PF04110 APG12: Ubiquitin-like 83.9 1.3 2.9E-05 36.5 3.6 80 299-399 2-82 (87)
98 KOG3970 Predicted E3 ubiquitin 83.1 1.3 2.8E-05 42.7 3.6 47 29-76 51-106 (299)
99 KOG1940 Zn-finger protein [Gen 82.4 0.79 1.7E-05 45.5 2.0 43 29-72 159-204 (276)
100 KOG2660 Locus-specific chromos 80.7 1.2 2.6E-05 45.0 2.6 42 309-350 158-201 (331)
101 KOG2034 Vacuolar sorting prote 80.4 0.72 1.6E-05 51.9 1.0 39 23-61 812-851 (911)
102 KOG1952 Transcription factor N 79.4 1.1 2.3E-05 50.3 1.9 47 27-73 190-245 (950)
103 PF10272 Tmpp129: Putative tra 79.2 1.2 2.6E-05 45.8 2.1 28 49-76 313-352 (358)
104 PF14569 zf-UDP: Zinc-binding 78.9 2 4.4E-05 34.7 2.9 47 29-75 10-62 (80)
105 KOG1812 Predicted E3 ubiquitin 78.7 1.2 2.5E-05 46.3 1.9 43 27-69 145-195 (384)
106 PF05883 Baculo_RING: Baculovi 76.2 0.77 1.7E-05 40.8 -0.2 34 28-61 26-67 (134)
107 PF03854 zf-P11: P-11 zinc fin 74.8 1.1 2.4E-05 33.0 0.3 31 45-76 16-47 (50)
108 PHA02862 5L protein; Provision 74.1 2.6 5.5E-05 38.1 2.5 46 29-76 3-54 (156)
109 KOG3268 Predicted E3 ubiquitin 73.6 2.3 5E-05 39.6 2.1 32 45-76 188-229 (234)
110 KOG1815 Predicted E3 ubiquitin 73.5 1.8 3.9E-05 45.6 1.6 37 26-62 68-104 (444)
111 KOG1428 Inhibitor of type V ad 72.9 3.4 7.3E-05 49.2 3.6 50 27-76 3485-3545(3738)
112 KOG1812 Predicted E3 ubiquitin 70.8 1.9 4.1E-05 44.7 1.1 43 26-70 304-351 (384)
113 PHA02825 LAP/PHD finger-like p 70.4 5.1 0.00011 36.7 3.6 48 27-76 7-60 (162)
114 KOG3899 Uncharacterized conser 69.3 2.4 5.2E-05 42.3 1.4 30 47-76 325-366 (381)
115 KOG3579 Predicted E3 ubiquitin 68.2 1.8 3.9E-05 43.0 0.3 34 28-62 268-305 (352)
116 COG5109 Uncharacterized conser 67.2 4.4 9.6E-05 40.9 2.7 55 19-74 327-386 (396)
117 KOG0309 Conserved WD40 repeat- 65.2 4.4 9.6E-05 45.2 2.5 47 28-75 1028-1076(1081)
118 KOG2169 Zn-finger transcriptio 65.1 4.6 0.0001 44.6 2.7 66 23-90 301-370 (636)
119 PF07191 zinc-ribbons_6: zinc- 64.2 1.2 2.5E-05 35.4 -1.6 41 28-75 1-41 (70)
120 PLN02189 cellulose synthase 62.4 4.8 0.0001 46.6 2.2 46 30-75 36-87 (1040)
121 KOG3113 Uncharacterized conser 62.1 6.3 0.00014 38.7 2.6 57 26-85 109-168 (293)
122 COG3813 Uncharacterized protei 61.9 5.3 0.00011 32.0 1.7 33 48-84 28-60 (84)
123 KOG1100 Predicted E3 ubiquitin 58.4 5 0.00011 38.2 1.3 40 31-76 161-201 (207)
124 PF12906 RINGv: RING-variant d 56.1 6.6 0.00014 28.4 1.3 39 31-70 1-47 (47)
125 PLN02436 cellulose synthase A 55.6 7.2 0.00016 45.3 2.1 46 30-75 38-89 (1094)
126 KOG3439 Protein conjugation fa 55.4 22 0.00047 30.8 4.4 82 295-399 29-111 (116)
127 PF06906 DUF1272: Protein of u 55.0 12 0.00026 28.5 2.5 44 30-76 7-53 (57)
128 PF10571 UPF0547: Uncharacteri 53.5 8.2 0.00018 24.7 1.3 22 30-51 2-24 (26)
129 PLN02915 cellulose synthase A 52.9 12 0.00027 43.3 3.4 47 29-75 16-68 (1044)
130 KOG0825 PHD Zn-finger protein 51.0 12 0.00027 42.1 2.9 45 28-72 96-151 (1134)
131 PF06084 Cytomega_TRL10: Cytom 50.1 32 0.00069 30.0 4.7 24 159-182 125-148 (150)
132 PLN02638 cellulose synthase A 49.3 11 0.00023 44.0 2.2 47 29-75 18-70 (1079)
133 cd01806 Nedd8 Nebb8-like ubiq 47.5 26 0.00056 26.7 3.6 44 300-349 2-45 (76)
134 KOG4718 Non-SMC (structural ma 46.7 10 0.00022 36.3 1.3 45 29-74 182-226 (235)
135 cd01803 Ubiquitin Ubiquitin. U 46.3 24 0.00052 26.9 3.2 44 300-349 2-45 (76)
136 PLN02400 cellulose synthase 45.8 11 0.00024 43.9 1.6 46 30-75 38-89 (1085)
137 PF07975 C1_4: TFIIH C1-like d 45.6 21 0.00045 26.7 2.5 28 43-71 23-50 (51)
138 PF11543 UN_NPL4: Nuclear pore 44.8 15 0.00032 29.7 1.8 59 320-396 19-77 (80)
139 KOG4185 Predicted E3 ubiquitin 44.1 4 8.8E-05 40.2 -1.9 44 29-73 208-265 (296)
140 TIGR00622 ssl1 transcription f 43.4 20 0.00042 31.1 2.4 42 29-71 56-110 (112)
141 COG0068 HypF Hydrogenase matur 43.4 14 0.00031 41.2 1.9 52 25-76 98-185 (750)
142 PF05605 zf-Di19: Drought indu 43.2 16 0.00034 27.0 1.6 38 27-72 1-39 (54)
143 KOG3842 Adaptor protein Pellin 42.1 19 0.00041 36.6 2.4 32 44-76 375-415 (429)
144 PRK04023 DNA polymerase II lar 42.1 23 0.0005 41.1 3.4 45 28-76 626-675 (1121)
145 PF02318 FYVE_2: FYVE-type zin 41.7 2.1 4.6E-05 36.9 -3.8 46 27-72 53-102 (118)
146 PF13881 Rad60-SLD_2: Ubiquiti 41.3 34 0.00074 29.4 3.6 76 297-391 3-78 (111)
147 PLN02195 cellulose synthase A 41.2 18 0.00038 41.9 2.3 46 30-75 8-59 (977)
148 PTZ00380 microtubule-associate 41.2 35 0.00076 29.9 3.7 65 316-399 42-106 (121)
149 KOG3053 Uncharacterized conser 40.6 22 0.00047 35.2 2.5 52 24-75 16-82 (293)
150 PF01485 IBR: IBR domain; Int 40.3 6.7 0.00015 29.0 -0.8 32 29-60 19-59 (64)
151 KOG2068 MOT2 transcription fac 40.2 23 0.00049 36.1 2.7 47 29-76 250-299 (327)
152 KOG2462 C2H2-type Zn-finger pr 39.5 11 0.00025 37.3 0.4 51 27-78 160-229 (279)
153 KOG1829 Uncharacterized conser 38.2 11 0.00024 41.2 0.2 27 42-72 532-558 (580)
154 KOG1654 Microtubule-associated 37.5 66 0.0014 27.9 4.6 81 301-399 31-111 (116)
155 PF12773 DZR: Double zinc ribb 37.4 33 0.00072 24.5 2.6 27 49-75 12-40 (50)
156 PF06844 DUF1244: Protein of u 37.2 17 0.00038 28.5 1.0 12 50-61 11-22 (68)
157 PF14353 CpXC: CpXC protein 35.8 28 0.0006 30.0 2.3 47 29-76 2-50 (128)
158 PF04710 Pellino: Pellino; In 35.5 12 0.00027 38.9 0.0 48 28-76 328-402 (416)
159 cd01794 DC_UbP_C dendritic cel 34.3 35 0.00076 26.5 2.4 30 319-348 13-42 (70)
160 smart00064 FYVE Protein presen 34.2 23 0.0005 26.9 1.4 33 29-61 11-46 (68)
161 PF00240 ubiquitin: Ubiquitin 33.6 45 0.00097 25.0 2.9 48 319-385 10-57 (69)
162 PF14446 Prok-RING_1: Prokaryo 33.5 29 0.00063 26.2 1.7 31 28-58 5-38 (54)
163 PF10497 zf-4CXXC_R1: Zinc-fin 33.4 36 0.00077 28.9 2.5 28 48-75 37-72 (105)
164 smart00647 IBR In Between Ring 33.2 12 0.00026 27.6 -0.4 33 29-61 19-60 (64)
165 cd01799 Hoil1_N Ubiquitin-like 32.1 58 0.0013 25.7 3.3 55 321-397 19-73 (75)
166 PF10186 Atg14: UV radiation r 31.5 1E+02 0.0023 29.7 5.8 22 30-60 1-22 (302)
167 TIGR00143 hypF [NiFe] hydrogen 31.1 25 0.00054 39.5 1.5 49 27-75 67-151 (711)
168 PF05470 eIF-3c_N: Eukaryotic 30.8 1.1E+02 0.0023 33.9 6.2 75 275-353 234-308 (595)
169 PF04216 FdhE: Protein involve 30.6 11 0.00024 37.3 -1.3 45 28-73 172-220 (290)
170 cd00065 FYVE FYVE domain; Zinc 30.4 31 0.00068 25.1 1.5 33 29-61 3-38 (57)
171 KOG0314 Predicted E3 ubiquitin 29.8 31 0.00068 36.6 1.8 52 19-72 210-263 (448)
172 smart00249 PHD PHD zinc finger 28.7 29 0.00064 23.3 1.0 30 30-59 1-32 (47)
173 PF13901 DUF4206: Domain of un 27.3 44 0.00095 31.5 2.2 39 28-72 152-197 (202)
174 KOG0269 WD40 repeat-containing 27.1 55 0.0012 36.9 3.1 47 29-76 780-829 (839)
175 PRK00647 hypothetical protein; 26.9 50 0.0011 27.8 2.2 38 295-348 27-64 (96)
176 cd00350 rubredoxin_like Rubred 26.6 45 0.00098 22.2 1.6 9 64-72 17-25 (33)
177 cd01805 RAD23_N Ubiquitin-like 26.6 69 0.0015 24.6 2.9 31 319-349 15-47 (77)
178 KOG0824 Predicted E3 ubiquitin 26.4 21 0.00046 35.9 -0.1 51 25-76 102-152 (324)
179 cd01809 Scythe_N Ubiquitin-lik 25.7 90 0.002 23.3 3.4 43 301-349 3-45 (72)
180 KOG2231 Predicted E3 ubiquitin 25.6 26 0.00056 39.0 0.4 44 30-74 2-51 (669)
181 PTZ00044 ubiquitin; Provisiona 25.2 74 0.0016 24.4 2.8 42 302-349 4-45 (76)
182 PF02594 DUF167: Uncharacteris 25.2 59 0.0013 26.1 2.3 21 328-348 43-63 (77)
183 PF10446 DUF2457: Protein of u 25.1 1.4E+02 0.003 31.8 5.5 25 239-263 118-143 (458)
184 cd01798 parkin_N amino-termina 24.8 63 0.0014 24.6 2.3 30 319-348 13-42 (70)
185 KOG2807 RNA polymerase II tran 23.9 44 0.00095 34.2 1.6 27 48-74 329-355 (378)
186 PF01363 FYVE: FYVE zinc finge 23.5 23 0.0005 27.0 -0.4 34 27-60 8-44 (69)
187 PF13719 zinc_ribbon_5: zinc-r 23.0 41 0.00088 23.0 0.8 14 29-42 3-16 (37)
188 TIGR01562 FdhE formate dehydro 23.0 30 0.00066 34.9 0.3 44 28-72 184-232 (305)
189 KOG2807 RNA polymerase II tran 22.0 31 0.00067 35.2 0.1 41 30-71 332-374 (378)
190 cd01776 Rin1_RA Ubiquitin doma 21.6 1.2E+02 0.0025 25.1 3.3 35 320-354 19-54 (87)
191 PRK00420 hypothetical protein; 21.5 32 0.00069 29.8 0.1 13 63-75 39-51 (112)
192 KOG0006 E3 ubiquitin-protein l 21.5 50 0.0011 33.7 1.4 28 47-74 342-407 (446)
193 PF10146 zf-C4H2: Zinc finger- 21.4 73 0.0016 30.9 2.5 25 51-76 196-220 (230)
194 cd01796 DDI1_N DNA damage indu 21.2 83 0.0018 24.2 2.4 31 319-349 14-44 (71)
195 cd01769 UBL Ubiquitin-like dom 21.1 99 0.0021 22.5 2.8 29 319-347 12-40 (69)
196 KOG2076 RNA polymerase III tra 21.1 1.1E+02 0.0024 35.2 4.1 36 248-283 106-142 (895)
197 smart00154 ZnF_AN1 AN1-like Zi 20.9 52 0.0011 22.9 1.0 23 31-53 1-24 (39)
198 KOG3362 Predicted BBOX Zn-fing 20.7 35 0.00077 30.8 0.2 27 29-57 119-146 (156)
199 KOG1815 Predicted E3 ubiquitin 20.5 50 0.0011 34.8 1.3 20 40-60 178-197 (444)
200 cd01792 ISG15_repeat1 ISG15 ub 20.1 2.1E+02 0.0046 22.4 4.6 62 299-383 3-64 (80)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-38 Score=306.40 Aligned_cols=346 Identities=40% Similarity=0.597 Sum_probs=275.4
Q ss_pred CCCccccccccccccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChh
Q 015679 6 IPLKFSGFFCRFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN 85 (403)
Q Consensus 6 ~~~~s~g~~~e~v~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~ 85 (403)
+|++..+...+ +.+.+..++-++.||||+++++..++...|+|.||..||...+..+++.||.||+.+.+.+.+++++.
T Consensus 22 ~p~~~~~d~~E-i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~ 100 (381)
T KOG0311|consen 22 SPSSYNGDPSE-IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPN 100 (381)
T ss_pred ChhhhcCCchh-heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCcc
Confidence 34455566666 56888999999999999999999999788999999999999999899999999999999999999999
Q ss_pred hhHHHHhHhhhhhhhHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccchhcccccccccccCCCccccCccc
Q 015679 86 YDALISALYPDIDKYEEEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRR 164 (403)
Q Consensus 86 L~~lI~~l~~~c~~~eeel~~fceede~~kek-Lq~~L~~L~q~q~e~L~k~k~~~k~~~~a~~~r~rr~~r~~~~R~Rr 164 (403)
+++||.++++.+..++.....|.+.+.....+ |+..+++.++.+...+.+.+...+. +..+.. .++|+++
T Consensus 101 fdaLis~i~~sie~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~-------~s~r~g--~Gs~~~g 171 (381)
T KOG0311|consen 101 FDALISKIYPSIEEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL-------RSIRWG--GGSRRRG 171 (381)
T ss_pred HHHHHHHHhccHHHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc-------cccccc--CCCCCCC
Confidence 99999999999999999999999998887777 9999998867777777666553333 333333 3678899
Q ss_pred cCCCCCCCCC----CCccCcCCCCCCCCCCCCCcCCcccccchhcccCCCCCCC-CCCCCCC-CCCCccccccccccccc
Q 015679 165 NSRGTEHQGS----EDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRESR 238 (403)
Q Consensus 165 ~~r~~~~~~~----e~~~de~~~~~~~~~s~~d~~s~~~~~~~~~rr~~~r~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (403)
+.++.+.... +++..++.+.-++ .++-|+. +...++.++.-+..+ |+++.++ .+..++.+|.+..+++.
T Consensus 172 n~r~~~~s~~~a~~ea~~~~~~n~rg~-~ss~d~~----~~~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~ 246 (381)
T KOG0311|consen 172 NVRNVEQSKKSAPKEADGNDDENDRGK-DSSSDEL----MDFPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSS 246 (381)
T ss_pred CcccchhccccCCccCCCccccccccc-ccccccc----ccccccccccccccCCCCccccccCCCcccCCCCccccccc
Confidence 9999876643 2222222222223 3333444 444444444444333 5556565 58899999999889999
Q ss_pred CCCCCcccCcccccccCCCCCCcccCCCCC-CCccCccchhhHHHHHHHHHhhhcccccceeEEEEeecCCCCCCCCCCC
Q 015679 239 GISPGLVWNPEMLAWGRGGTRSNTRHGSAS-GCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQP 317 (403)
Q Consensus 239 ~~s~~~~~~~~~~~~g~~g~rs~~r~g~~~-~~~~~~~r~~~~~kl~~~l~~~~~~~~e~~~~l~l~~~d~~~~p~l~~p 317 (403)
++++.+||+.|..+||++|+|+.||+|++. |.-..++|.++..++++|+...+...+
T Consensus 247 ~i~r~~v~~~e~~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~---------------------- 304 (381)
T KOG0311|consen 247 TISRTLVWNRESSESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSN---------------------- 304 (381)
T ss_pred ccccccccccccchhccCCccccccccccccccchhhhhHHHHHHhhhhccccccccc----------------------
Confidence 999999999999999999999999999953 344566799999999999997666666
Q ss_pred cccccCcchHHHHHHHhhhccCCcccceEEEEEecc--cCccCCCCC--CCCChhhhhhccccchhhcccccccCCCCce
Q 015679 318 YLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKER--LDAKGNQST--PIPTTDQLQILEGQETLAGLRVNHTSNTDHL 393 (403)
Q Consensus 318 ~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 393 (403)
+|||.+.++..+++|+++.... ..++.+..+ .++.+|++..|++.+||+.++.+||..++.+
T Consensus 305 --------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m 370 (381)
T KOG0311|consen 305 --------------IKVAKKKPLKREEVELLVELIHPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPM 370 (381)
T ss_pred --------------ccccccCCcccccccccccccccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccch
Confidence 8999999999999999998873 223333222 3599999999999999999999999999999
Q ss_pred eehhhhhhc
Q 015679 394 ILAYRQKQS 402 (403)
Q Consensus 394 ~~~y~~~~~ 402 (403)
+|-|..|.|
T Consensus 371 ~l~~~~kk~ 379 (381)
T KOG0311|consen 371 ELSYHEKKI 379 (381)
T ss_pred hhhhchhcc
Confidence 999998875
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=8.7e-12 Score=88.80 Aligned_cols=39 Identities=38% Similarity=1.092 Sum_probs=31.3
Q ss_pred ccccccccccccccCCCCCcccHHHHhhhhhcCC---CCCCCC
Q 015679 31 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN---NECPAC 70 (403)
Q Consensus 31 CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~---~~CP~C 70 (403)
||||+++|.+||+ ++|||+||..||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999998 99999999999999998543 369987
No 3
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=5.2e-11 Score=121.76 Aligned_cols=69 Identities=23% Similarity=0.585 Sum_probs=60.4
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhH
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 93 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 93 (403)
+..++..+.|+||+++|.+|+. ++|||.||..||..|+.. ...||.|+..+.. ..+..|..+.++|..+
T Consensus 20 l~~Le~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE-SKLRSNWLVSEIVESF 88 (397)
T ss_pred ccccccccCCCcCchhhhCccC-CCCCCchhHHHHHHHHhC-CCCCCCCCCcccc-ccCccchHHHHHHHHH
Confidence 3788899999999999999996 999999999999999984 4689999999875 5788898888888544
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=6.8e-11 Score=89.98 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=52.7
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
++.||||.+++.+|+. ++|||+||..||..|+.. ...||.|+..+.. ..+.++..+.+.|.
T Consensus 1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~-~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh-hhceeCHHHHHHHH
Confidence 4789999999999996 899999999999999985 6789999999865 66777877777664
No 5
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.05 E-value=5.2e-11 Score=91.59 Aligned_cols=63 Identities=29% Similarity=0.727 Sum_probs=36.6
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
.+++.+.|++|.+++.+||.+..|.|.||..||...+. ..||+|.++... .+++.|..|+++|
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 45677999999999999998789999999999988765 359999999987 7899999998775
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=3.9e-10 Score=104.68 Aligned_cols=55 Identities=29% Similarity=0.671 Sum_probs=45.9
Q ss_pred ccccccccccccccccccccccccCCCCCcccHHHHhhhhhc---------------CCCCCCCCcccccC
Q 015679 21 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---------------GNNECPACRTHCAS 76 (403)
Q Consensus 21 ~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~---------------~~~~CP~CR~~~~~ 76 (403)
++.+..+++.|+||++.+.+|+. ++|||.||..||..|+.. ....||.|+..+..
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34456678999999999999996 899999999999999752 23579999998864
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.96 E-value=3.7e-10 Score=89.57 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=53.0
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
++|.||||.++|.+||. ++|||+|++.||..|+......||.|+..+.. ..+.+|..+.+.|..+.
T Consensus 3 ~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSE-SDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG-GGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc-ccceECHHHHHHHHHHH
Confidence 56889999999999996 89999999999999999767899999998886 67889999988886554
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=2.8e-10 Score=79.36 Aligned_cols=39 Identities=46% Similarity=1.157 Sum_probs=34.2
Q ss_pred ccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCC
Q 015679 31 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 70 (403)
Q Consensus 31 CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~C 70 (403)
|+||++.+.+|+.+++|||.||..||.+|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999667999999999999999996 6899987
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.87 E-value=6.7e-10 Score=109.66 Aligned_cols=69 Identities=26% Similarity=0.625 Sum_probs=59.6
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhH
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 93 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 93 (403)
+..+...++|.||.++|..|+. +||+|+||..||..++. ....||.|+..+.. ..++.|..+.++|..+
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~i-tpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMI-TPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE-SDLRNNRILDEIVKSL 85 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCcee-ccccchHHHHHHHHHhc-cCCCCCceecccch-hhhhhhhHHHHHHHHH
Confidence 3566778999999999999995 99999999999999998 45789999999886 6788888888887544
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=2.2e-09 Score=75.22 Aligned_cols=40 Identities=40% Similarity=1.075 Sum_probs=36.5
Q ss_pred ccccccccccccccCCCCCcccHHHHhhhhh-cCCCCCCCC
Q 015679 31 CPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPAC 70 (403)
Q Consensus 31 CpIClel~~dPvtll~CgH~FC~~CI~~~l~-~~~~~CP~C 70 (403)
|+||++.+.+|+.+++|||.||..||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999996699999999999999998 566789987
No 11
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-09 Score=102.31 Aligned_cols=87 Identities=32% Similarity=0.677 Sum_probs=68.3
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhh------
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP------ 95 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~------ 95 (403)
...+.+++.||||++.|.+|+ +++|||+||..||..+|. ....||.||. ... .+..|..+.+++..+..
T Consensus 7 ~~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~~~~~~~~ 81 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERLRQLRLSRP 81 (386)
T ss_pred hhhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHHHhcCCccc
Confidence 456678899999999999996 599999999999999998 6679999996 332 56678888877765432
Q ss_pred ------hhhhhHHHHHhccHHHHH
Q 015679 96 ------DIDKYEEEELAFHEEERT 113 (403)
Q Consensus 96 ------~c~~~eeel~~fceede~ 113 (403)
.|..|.+.+.+||+++..
T Consensus 82 ~~~~~~~c~~~~~~~~~~c~~~~~ 105 (386)
T KOG2177|consen 82 LGSKEELCEKHGEELKLFCEEDEK 105 (386)
T ss_pred ccccchhhhhcCCcceEEeccccc
Confidence 356666667788887773
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.76 E-value=2e-09 Score=76.90 Aligned_cols=41 Identities=41% Similarity=0.983 Sum_probs=34.1
Q ss_pred cccccccccc--cccccCCCCCcccHHHHhhhhhcCCCCCCCCc
Q 015679 30 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACR 71 (403)
Q Consensus 30 ~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR 71 (403)
.|+||++.|. +.+..++|||.||..||..|++. +..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999995 34445889999999999999985 57999997
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=7.1e-09 Score=72.17 Aligned_cols=44 Identities=48% Similarity=1.124 Sum_probs=38.8
Q ss_pred cccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 30 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 30 ~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
.|+||++.+.+++.+.+|||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999988887667999999999999998657789999874
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=5.9e-09 Score=76.50 Aligned_cols=47 Identities=32% Similarity=0.888 Sum_probs=40.2
Q ss_pred ccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
++..|+||++...+++. +||||. ||..|+.+|+. ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVL-LPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEE-eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 35789999999999885 999999 99999999998 6789999999875
No 15
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.71 E-value=8.5e-09 Score=99.15 Aligned_cols=50 Identities=40% Similarity=0.846 Sum_probs=41.2
Q ss_pred ccccccccccccccccc-------ccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTR-------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPv-------tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.++..|+||++.+.++. .+++|+|.||..||.+|+. ....||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 45688999999876531 2478999999999999998 56799999998764
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=92.45 Aligned_cols=48 Identities=33% Similarity=0.949 Sum_probs=41.1
Q ss_pred cccccccccccccc--ccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~d--Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.-+.||||++-+.+ |+. +.|||.||..||...++ ....||.|++.+..
T Consensus 130 ~~~~CPiCl~~~sek~~vs-TkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVS-TKCGHVFCSQCIKDALK-NTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccc-cccchhHHHHHHHHHHH-hCCCCCCcccccch
Confidence 34789999999985 454 89999999999999998 45789999998765
No 17
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.66 E-value=1.8e-08 Score=98.01 Aligned_cols=66 Identities=24% Similarity=0.516 Sum_probs=52.2
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
.-+.-.+.|-||.++|..|+. ++|||+||..||..++. ....||+||..... ..++.+..+..+++
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~-TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~e 85 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCE-TTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINE 85 (391)
T ss_pred hcchhHHHhhhhhheeeccee-cccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHH
Confidence 445556899999999999995 99999999999999998 55789999997654 34555555555543
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-08 Score=99.12 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=43.7
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+....|.||++...+|-. +||||.||-.||..|... ...||.||..++.
T Consensus 237 ~a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 445889999999999996 999999999999999984 4679999998876
No 19
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.63 E-value=1.4e-08 Score=100.32 Aligned_cols=79 Identities=29% Similarity=0.690 Sum_probs=67.7
Q ss_pred ccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCC---CCCCCChhhhHHHHhHhh
Q 015679 19 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPNYDALISALYP 95 (403)
Q Consensus 19 ~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~---~~l~~n~~L~~lI~~l~~ 95 (403)
.+....+...+.|.+|..+|.++.+++.|.|+||..||.+++.. +..||.|...+... ..++.+..|+.++.+++|
T Consensus 6 ~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVP 84 (331)
T KOG2660|consen 6 RVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVP 84 (331)
T ss_pred hhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcc
Confidence 34567788889999999999999999999999999999999994 78999999876542 357788889999999998
Q ss_pred hhh
Q 015679 96 DID 98 (403)
Q Consensus 96 ~c~ 98 (403)
...
T Consensus 85 gl~ 87 (331)
T KOG2660|consen 85 GLQ 87 (331)
T ss_pred hHH
Confidence 755
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.9e-08 Score=95.28 Aligned_cols=49 Identities=29% Similarity=0.717 Sum_probs=43.1
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 76 (403)
-.+.|-||++..++||. +.|||-||..||.+|+.. .+..||+|+..+..
T Consensus 46 ~~FdCNICLd~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCCEE-eecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 46889999999999995 999999999999999985 34579999998865
No 21
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=4e-07 Score=90.33 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=38.9
Q ss_pred cccccccccc-ccccc---ccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGI-IKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel-~~dPv---tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+..||+|... +.+|- .+.+|||.||..||..+|..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4679999973 44443 2237999999999999887777899999988765
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=7.5e-08 Score=64.63 Aligned_cols=39 Identities=51% Similarity=1.201 Sum_probs=34.7
Q ss_pred ccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCC
Q 015679 31 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 70 (403)
Q Consensus 31 CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~C 70 (403)
|+||++....++. ++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999888885 89999999999999998566789987
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.45 E-value=1e-07 Score=90.04 Aligned_cols=53 Identities=30% Similarity=0.738 Sum_probs=40.5
Q ss_pred cccccccccccccccccc--------cccCCCCCcccHHHHhhhhhcC-----CCCCCCCcccccC
Q 015679 24 EIRKDVQCPICLGIIKKT--------RTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCAS 76 (403)
Q Consensus 24 ~l~eel~CpIClel~~dP--------vtll~CgH~FC~~CI~~~l~~~-----~~~CP~CR~~~~~ 76 (403)
...++..|+||++...++ -.+.+|+|.||..||..|.... ...||.||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 345578999999987432 1247899999999999999742 3469999997753
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.42 E-value=1.5e-07 Score=67.46 Aligned_cols=42 Identities=31% Similarity=0.825 Sum_probs=34.6
Q ss_pred ccccccccc--ccccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 30 QCPICLGII--KKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 30 ~CpIClel~--~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
.|+||...+ ..+..+++|||+||..|+..+. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 3344469999999999999988 35678999985
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=8e-08 Score=68.87 Aligned_cols=36 Identities=33% Similarity=0.944 Sum_probs=22.2
Q ss_pred cccccccccc----ccccCCCCCcccHHHHhhhhhcC---CCCCC
Q 015679 31 CPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG---NNECP 68 (403)
Q Consensus 31 CpIClel~~d----Pvtll~CgH~FC~~CI~~~l~~~---~~~CP 68 (403)
||||.+ |.+ |+. ++|||+||..||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 877 886 8899999999999999843 34676
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-07 Score=98.38 Aligned_cols=48 Identities=35% Similarity=0.745 Sum_probs=42.6
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcC----CCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG----NNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~----~~~CP~CR~~~~~ 76 (403)
+..||||++...-|+. +.|||.||..||..+|... -..||.|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999996 8899999999999999853 3489999998876
No 27
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.32 E-value=3e-07 Score=72.99 Aligned_cols=41 Identities=34% Similarity=0.747 Sum_probs=32.7
Q ss_pred ccccccccccc------------ccccCCCCCcccHHHHhhhhhcCCCCCCCCc
Q 015679 30 QCPICLGIIKK------------TRTVMECLHRFCRECIDKSMRLGNNECPACR 71 (403)
Q Consensus 30 ~CpIClel~~d------------Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR 71 (403)
.|+||++.|.+ ++.+.+|||.|+..||.+|+. ....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 49999999943 334468999999999999998 556999997
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.1e-07 Score=87.75 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=42.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhh-hhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDK-SMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~-~l~~~~~~CP~CR~~~~~ 76 (403)
..++.|+||++....|.. ++|||.||..||.. |-......||.||..+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 347889999999999997 99999999999999 655455569999998765
No 29
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=87.31 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=41.5
Q ss_pred ccccccccccc--cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..|.||++.|. +-+.++||.|.|+..||..|+.+....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 48999999997 5677799999999999999999665679999996654
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.3e-06 Score=94.58 Aligned_cols=60 Identities=25% Similarity=0.624 Sum_probs=51.8
Q ss_pred ccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCC
Q 015679 19 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 80 (403)
Q Consensus 19 ~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l 80 (403)
...+..+..-+.||.|..-+.+.|. +.|||.||..||...+..+...||.|-+.|.. .++
T Consensus 634 ~EElk~yK~~LkCs~Cn~R~Kd~vI-~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga-nDv 693 (698)
T KOG0978|consen 634 AEELKEYKELLKCSVCNTRWKDAVI-TKCGHVFCEECVQTRYETRQRKCPKCNAAFGA-NDV 693 (698)
T ss_pred HHHHHHHHhceeCCCccCchhhHHH-HhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc-ccc
Confidence 3445778888999999999999995 99999999999999998888899999999986 444
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-06 Score=83.42 Aligned_cols=48 Identities=38% Similarity=0.766 Sum_probs=41.1
Q ss_pred ccccccccccc--cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..|.||+.-|. +-+.++||.|.|+..|+.+|+..-...||+||++++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998775 4566799999999999999998666799999998763
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.7e-06 Score=81.24 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=43.5
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.-.|+||+....-|+. ++|+|.||+.||......+...|++||.++.+
T Consensus 7 ~~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 3569999999999986 99999999999999887788899999999986
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.4e-06 Score=84.33 Aligned_cols=55 Identities=33% Similarity=0.757 Sum_probs=48.0
Q ss_pred cccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 20 v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.....+..++.|.||..++.+|++ +||||+||..||.+.+. ....||.||..+..
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 344556789999999999999998 89999999999999887 67899999998764
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.72 E-value=1.6e-05 Score=73.95 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=45.6
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
-.|.|.||...|..||. +.|||.||..|..+-++ ....|-.|.+.... .+.+...++.++
T Consensus 195 IPF~C~iCKkdy~spvv-t~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G--~f~V~~d~~kmL 254 (259)
T COG5152 195 IPFLCGICKKDYESPVV-TECGHSFCSLCAIRKYQ-KGDECGVCGKATYG--RFWVVSDLQKML 254 (259)
T ss_pred Cceeehhchhhccchhh-hhcchhHHHHHHHHHhc-cCCcceecchhhcc--ceeHHhhHHHHH
Confidence 34789999999999996 99999999999888777 44689999886653 233333344443
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.4e-05 Score=85.62 Aligned_cols=47 Identities=30% Similarity=0.686 Sum_probs=40.8
Q ss_pred cccccccccccccc-----ccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKK-----TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~d-----Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.+..|+||.+.+.. |.. ++|+|.||..|+..|++ ....||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~r-L~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKR-LPCGHIFHDSCLRSWFE-RQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccce-eecccchHHHHHHHHHH-HhCcCCcchhhhh
Confidence 36789999999998 554 89999999999999999 5789999999443
No 36
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.63 E-value=3.4e-05 Score=79.60 Aligned_cols=57 Identities=28% Similarity=0.815 Sum_probs=48.0
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 80 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l 80 (403)
..+.+++.|+||..++.+|+..+.|||.||..|+..|... ...||.|+........+
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhcc
Confidence 3467889999999999999973499999999999999995 77999998877653333
No 37
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.61 E-value=3.8e-05 Score=62.77 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=37.0
Q ss_pred ccccccccccccc-----------c-ccccCCCCCcccHHHHhhhhhc--CCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIK-----------K-TRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~-----------d-Pvtll~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 75 (403)
.+-.|+||...|. + |+.+-.|+|.|+..||.+|+.. .+..||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3566777776665 1 4444579999999999999985 3569999998764
No 38
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.5e-05 Score=77.67 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=39.6
Q ss_pred cccccccccccccc-------------cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 26 RKDVQCPICLGIIK-------------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 26 ~eel~CpIClel~~-------------dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
..+-.|.||++-+. .|.. +||||.|+..|+..|+. +..+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 35678999998744 2466 89999999999999998 778999999984
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.59 E-value=3.2e-05 Score=58.74 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=31.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhc-CCCCCCC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA 69 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~ 69 (403)
.-.+.|||.+..|.+||.-..|||+|....|..|++. +...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3458899999999999986789999999999999942 4558998
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.57 E-value=5.4e-05 Score=74.37 Aligned_cols=44 Identities=30% Similarity=0.861 Sum_probs=39.4
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
|.||+|..++++|+....|+|.||.+||...+-..-+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 88999999999999845799999999999888766789999965
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=9.6e-05 Score=71.95 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=42.1
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhc-CCCCCCCCccccc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA 75 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~ 75 (403)
.....||+|.+....|.++.+|+|.||.-||...... .+..||.|...+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3456799999999999987779999999999886653 3579999998775
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00027 Score=69.49 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=40.7
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+-|-||...|.+||. +.|+|.||..|...-++ ....|+.|.+....
T Consensus 242 f~c~icr~~f~~pVv-t~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVV-TKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchh-hcCCceeehhhhccccc-cCCcceeccccccc
Confidence 569999999999996 99999999999988887 55789999887754
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.01 E-value=0.00023 Score=73.32 Aligned_cols=47 Identities=28% Similarity=0.679 Sum_probs=38.2
Q ss_pred ccccccccccccccccccc---ccCCCCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 24 EIRKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPv---tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
.+.+.-+||+|++-+-..+ ..+.|.|+|+..|+..||. ..||+||--
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~ 220 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYC 220 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhh
Confidence 4556678999999998655 2267999999999999997 579999863
No 44
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0011 Score=67.87 Aligned_cols=55 Identities=29% Similarity=0.717 Sum_probs=41.4
Q ss_pred ccccccccccccccc----ccCCCCCcccHHHHhhhhhcC-CCCCCCCcccccCCCCCCCC
Q 015679 28 DVQCPICLGIIKKTR----TVMECLHRFCRECIDKSMRLG-NNECPACRTHCASRRSLRDD 83 (403)
Q Consensus 28 el~CpIClel~~dPv----tll~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~~l~~n 83 (403)
-.+||||++-+.-|. ..+.|||.|-..||.+|+.+. ...||.|...... +.+++-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk-r~i~~e 63 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK-RQIRPE 63 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH-HHHHHH
Confidence 357999999887653 336799999999999999632 3489999887665 444433
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00047 Score=69.91 Aligned_cols=50 Identities=30% Similarity=0.758 Sum_probs=39.5
Q ss_pred ccccccccccccccccc-------ccCCCCCcccHHHHhhhhhcC------CCCCCCCccccc
Q 015679 26 RKDVQCPICLGIIKKTR-------TVMECLHRFCRECIDKSMRLG------NNECPACRTHCA 75 (403)
Q Consensus 26 ~eel~CpIClel~~dPv-------tll~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~ 75 (403)
..+..|.||++...++. .+.+|.|.||..||..|-... +..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34788999999887665 225699999999999998432 468999998654
No 46
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.58 E-value=0.00089 Score=70.33 Aligned_cols=52 Identities=29% Similarity=0.694 Sum_probs=43.1
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhhc----CCCCCCCCcccccC
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL----GNNECPACRTHCAS 76 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~----~~~~CP~CR~~~~~ 76 (403)
....+..|.+|.+.-.+++. ..|-|.||..||..++.. .+.+||+|...++.
T Consensus 532 enk~~~~C~lc~d~aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cccCceeecccCChhhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 34456789999999999996 999999999999888752 34689999887754
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00099 Score=69.48 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=38.8
Q ss_pred cccccccccccccc-----cc-----------cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 26 RKDVQCPICLGIIK-----KT-----------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 26 ~eel~CpIClel~~-----dP-----------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
+..-.|+||+..+. .| ..++||.|.|+..|+.+|+..-+-.||+||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 44567999987653 11 2247999999999999999955568999999875
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.31 E-value=0.00082 Score=52.99 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=23.7
Q ss_pred cccccccccccc----ccccc---CCCCCcccHHHHhhhhhc--C--------CCCCCCCcccccC
Q 015679 28 DVQCPICLGIIK----KTRTV---MECLHRFCRECIDKSMRL--G--------NNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~----dPvtl---l~CgH~FC~~CI~~~l~~--~--------~~~CP~CR~~~~~ 76 (403)
++.|+||...+. .|..+ ..|++.|+..|+.+|+.. + .+.||.|+++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 567999998765 23322 159999999999999963 1 1369999998753
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0011 Score=49.78 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=39.5
Q ss_pred ccccccccccccccccCCCCC-cccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
..|.||.+-..+.|. .-||| ..|+.|-.+.|+.....||.||.++.
T Consensus 8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 569999999999994 88999 56999998888866779999999764
No 50
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.012 Score=56.63 Aligned_cols=45 Identities=27% Similarity=0.716 Sum_probs=33.1
Q ss_pred cccccccccc-ccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGII-KKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~-~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..|--|...- .+|..|+.|+|.||..|...... ..||.|++.+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeee
Confidence 4577665422 46777899999999999875443 289999998643
No 51
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0013 Score=64.17 Aligned_cols=48 Identities=29% Similarity=0.619 Sum_probs=38.4
Q ss_pred ccccccccccccc----------ccccCCCCCcccHHHHhhhhhcC-CCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKK----------TRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~d----------Pvtll~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 76 (403)
+--|.+|..-+.. ..+ ++|+|.|+..||..|.-.+ ..+||.|+..+..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~-LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYK-LSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhhee-eecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 5669999876653 345 7899999999999998754 3589999998765
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.15 E-value=0.0019 Score=71.76 Aligned_cols=49 Identities=22% Similarity=0.703 Sum_probs=37.7
Q ss_pred ccccccccccccc------cccccCCCCCcccHHHHhhhhhc-CCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~------dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~ 75 (403)
-.-.|+||..++. ...++..|.|.|+..|+.+|++. ++..||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3446999998776 22334569999999999999985 4568999997654
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.09 E-value=0.0015 Score=71.31 Aligned_cols=49 Identities=29% Similarity=0.568 Sum_probs=38.0
Q ss_pred cccccccccccccccccc--CCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtl--l~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..-.||+|+.-+.+-... ..|+|.||..||..|.+ ...+||.||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 345799998877654321 36999999999999988 56799999987643
No 54
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.05 E-value=0.0059 Score=44.84 Aligned_cols=44 Identities=30% Similarity=0.799 Sum_probs=22.5
Q ss_pred ccccccccccc-cccC--CCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 31 CPICLGIIKKT-RTVM--ECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 31 CpIClel~~dP-vtll--~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
||+|.+.+... ..+. +||+.+|..|....+....+.||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78998877311 1122 58999999999999876678999999865
No 55
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0053 Score=62.61 Aligned_cols=47 Identities=21% Similarity=0.558 Sum_probs=33.8
Q ss_pred cccccccccccccc---ccCCCCCcccHHHHhhhhhcCC--CCCCCCccccc
Q 015679 29 VQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGN--NECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~dPv---tll~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~~ 75 (403)
..|.||.+.+-.-. .+-.|||+|+..|+..|+.... ..||.|+-...
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 46999976654221 1124999999999999998643 38999995443
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.71 E-value=0.011 Score=57.69 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=45.6
Q ss_pred ccccccccccccccc---cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChh
Q 015679 25 IRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN 85 (403)
Q Consensus 25 l~eel~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~ 85 (403)
-...+.|||....|. .-|.+.+|||.|+..+|...- ....||.|..++...+.+..|+.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCC
Confidence 356789999998885 355667999999999999873 34679999999987555554443
No 57
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.69 E-value=0.0038 Score=64.43 Aligned_cols=35 Identities=20% Similarity=0.822 Sum_probs=31.4
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHhhhh
Q 015679 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 25 l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l 60 (403)
+++++.||||..+|.+|+. ++|+|..|+.|....+
T Consensus 1 meeelkc~vc~~f~~epii-l~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPII-LPCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceE-eecccHHHHHHHHhhc
Confidence 4678999999999999995 9999999999987655
No 58
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0095 Score=58.73 Aligned_cols=47 Identities=32% Similarity=0.815 Sum_probs=37.7
Q ss_pred cccccc-ccccccc---ccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 30 QCPICL-GIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 30 ~CpICl-el~~dPv---tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.||+|. +.+.+|- .+-+|+|+.|.+|+...+..+...||.|-+..-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 599997 4556653 2248999999999999999899999999876543
No 59
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.006 Score=61.66 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=38.9
Q ss_pred cccccccccccccccccCCCCC-cccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
--.|.||+.-.++.+. +||.| ..|..|.....- ..+.||.||.++..
T Consensus 290 gkeCVIClse~rdt~v-LPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVV-LPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEE-ecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 4579999999999995 99999 569999877653 45689999998864
No 60
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.50 E-value=0.0057 Score=62.58 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=38.0
Q ss_pred cccccccccccccccCCCCCcccHHHHhhhhhcC-CCCCCCCcccccCCC
Q 015679 30 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCASRR 78 (403)
Q Consensus 30 ~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~ 78 (403)
.|-||-+-=++-. +-||||..|..|+..|.... ...||.||..+....
T Consensus 371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4889988655544 58999999999999998543 568999999876543
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0071 Score=61.03 Aligned_cols=48 Identities=29% Similarity=0.616 Sum_probs=41.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.++-.||||.--..+.|. .||+|.-|+.||.+.+- +++.|-.|++.+.
T Consensus 420 sEd~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVF-APCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhc-cCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 356789999988888886 99999999999999987 6788999988654
No 62
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.06 E-value=0.015 Score=42.72 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=31.5
Q ss_pred ccccccc--ccccccccCCCC-----CcccHHHHhhhhhcC-CCCCCCCc
Q 015679 30 QCPICLG--IIKKTRTVMECL-----HRFCRECIDKSMRLG-NNECPACR 71 (403)
Q Consensus 30 ~CpICle--l~~dPvtll~Cg-----H~FC~~CI~~~l~~~-~~~CP~CR 71 (403)
.|-||++ .-.+|.. .||. |.|+..|+.+|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~-~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLV-SPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeE-eccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 3346664 8885 789999999999754 45899984
No 63
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=95.04 E-value=0.036 Score=56.12 Aligned_cols=100 Identities=26% Similarity=0.330 Sum_probs=72.4
Q ss_pred HHHHHHhhh-cccccceeEEEEeecCCCCCCCCCCC-----------------cccccCcchHHHHHHHhhhccC----C
Q 015679 283 LVEYLRSLQ-ENNDELDVRLMLVSADTQCAPSLQQP-----------------YLCCQPSLSVKQLCEYVSLQTP----L 340 (403)
Q Consensus 283 l~~~l~~~~-~~~~e~~~~l~l~~~d~~~~p~l~~p-----------------~l~c~pt~~v~~l~~~va~~~~----~ 340 (403)
|+|+|..-. -.-.---|-++|+|.++...|.+..- =|..---|-|+-++.||+.-+- .
T Consensus 198 l~d~ll~n~~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~ 277 (331)
T PF11816_consen 198 LADCLLHNRIPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPES 277 (331)
T ss_pred HHHHhhcCCCCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccc
Confidence 567776211 11123458999999997777777666 5899999999999999999872 1
Q ss_pred -----------cccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccccccCCCCceeehhhhhh
Q 015679 341 -----------QAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQ 401 (403)
Q Consensus 341 -----------~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~y~~~~ 401 (403)
+.+-||||-- + |+|.-+-||+-++.-+|-..|+|+|-||.|.
T Consensus 278 ~~~~~~~~~~~p~e~lEl~C~-----------------g--qvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 278 KTPEMKPKKLKPEEWLELLCN-----------------G--QVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred cCccccccCCCCCceEEEEeC-----------------C--eEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 1222232211 1 4566678999999999999999999999985
No 64
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.77 E-value=0.028 Score=54.15 Aligned_cols=47 Identities=30% Similarity=0.851 Sum_probs=36.5
Q ss_pred cccccccc-cccccccc---cCC-CCCcccHHHHhhhhhcCCCCCC--CCcccc
Q 015679 28 DVQCPICL-GIIKKTRT---VME-CLHRFCRECIDKSMRLGNNECP--ACRTHC 74 (403)
Q Consensus 28 el~CpICl-el~~dPvt---ll~-CgH~FC~~CI~~~l~~~~~~CP--~CR~~~ 74 (403)
+-.||||. +.+.+|-. +-| |.|..|.+|+.+.+..+...|| -|.+.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 56899997 45556531 123 9999999999999999999999 686644
No 65
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.71 E-value=0.0072 Score=59.84 Aligned_cols=54 Identities=26% Similarity=0.459 Sum_probs=41.8
Q ss_pred ccccccccccccccccc-cc-cccCCCCCcccHHHHhhhhhc----------------------CCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIK-KT-RTVMECLHRFCRECIDKSMRL----------------------GNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~-dP-vtll~CgH~FC~~CI~~~l~~----------------------~~~~CP~CR~~~~~ 76 (403)
.+..+..+|.||+.-|. .| .+.++|.|.|+..|+.+++.. -...||+||..+..
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45566789999998776 34 667899999999999998851 12469999987643
No 66
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.39 E-value=0.025 Score=45.79 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.2
Q ss_pred CCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 46 ECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 46 ~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
-|.|.|+.-||.+|+. ..+.||.|++....
T Consensus 53 ~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence 4999999999999999 56899999987643
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.028 Score=54.44 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=42.0
Q ss_pred ccccccccccccccccc---cCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRT---VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvt---ll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.||+|.+.+.+.+. +-+|||.||..|+.+++. .-..||+|..++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 56889999999987643 358999999999999998 55789999998876
No 68
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.011 Score=47.39 Aligned_cols=46 Identities=30% Similarity=0.571 Sum_probs=33.4
Q ss_pred cccccccccc------------cccccCCCCCcccHHHHhhhhhcC--CCCCCCCccccc
Q 015679 30 QCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCA 75 (403)
Q Consensus 30 ~CpIClel~~------------dPvtll~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~ 75 (403)
.|.||.-.|. =|+.+=-|.|.|+.-||.+|+... ...||+||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 6777766654 134323499999999999999743 358999998653
No 69
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.032 Score=55.00 Aligned_cols=61 Identities=26% Similarity=0.538 Sum_probs=45.3
Q ss_pred ccccccccccc------cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc--cCC--CCCCCChhhhHHH
Q 015679 29 VQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC--ASR--RSLRDDPNYDALI 90 (403)
Q Consensus 29 l~CpIClel~~------dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~--~~~--~~l~~n~~L~~lI 90 (403)
+.|-||.+.|. .|.. +.|||+||..|+...+......||.||... ... ..+..|+.+...+
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~-l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~ 74 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRV-LKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAI 74 (296)
T ss_pred CceeecCccccccCcccCCcc-cccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHH
Confidence 56999988776 4664 779999999999999887777899999973 221 2445555555554
No 70
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.80 E-value=0.048 Score=48.19 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=41.6
Q ss_pred ccccccccccccccccccCC---CCCcccHHHHhhhhhcC--CCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVME---CLHRFCRECIDKSMRLG--NNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~---CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~ 76 (403)
....|-||.+...+...+-| ||-..|..|-...|+.- -..||+|++.+.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 56889999999887776443 99999999999999853 3589999998876
No 71
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.69 E-value=0.044 Score=41.33 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=36.5
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+..|-.|...-...+. ++|||..|..|..-+ +-+.||.|.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~pCgH~I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTV-LPCGHLICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEcccccccccc-ccccceeeccccChh---hccCCCCCCCcccC
Confidence 345668888887777775 899999999998643 34679999998864
No 72
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.68 E-value=0.027 Score=62.07 Aligned_cols=46 Identities=33% Similarity=0.779 Sum_probs=38.0
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCC-CCCCCCcccccC
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN-NECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~-~~CP~CR~~~~~ 76 (403)
+.|+||++ ...++ ++.|+|.||..|+...+.... ..||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 66666 599999999999999987543 369999986543
No 73
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.60 E-value=0.01 Score=60.70 Aligned_cols=66 Identities=20% Similarity=0.422 Sum_probs=46.0
Q ss_pred cccccccccccccccccccccccccccccc---cccccCCCCCcccHHHHhhhhhc-CCCCCCCCccccc
Q 015679 10 FSGFFCRFVFVELPEIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA 75 (403)
Q Consensus 10 s~g~~~e~v~v~~~~l~eel~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~ 75 (403)
.|.+..+|+...--.-+-++.|..|.+.+- +-..-+||.|+|+..|+..++.+ +...||.||+..+
T Consensus 347 ~d~~~~h~~ra~~~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 347 QDELRAHVVRAHECVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 344455555433333345688999998775 33444899999999999999864 3458999996544
No 74
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.57 E-value=0.035 Score=55.87 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=35.3
Q ss_pred cccccccccccc--ccc-cCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGIIKK--TRT-VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~d--Pvt-ll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
-.||+|++.+-. --. --+||-..|+.|....-+.-++.||.||..+..
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 349999987752 111 135888899999887766556899999997765
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.037 Score=56.13 Aligned_cols=45 Identities=29% Similarity=0.583 Sum_probs=35.5
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.....|.||++-..+.+. +||||.-| |+.-... ...||.||..+.
T Consensus 303 ~~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceee-ecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 345679999999999886 99999877 7766544 346999998664
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.018 Score=56.86 Aligned_cols=42 Identities=33% Similarity=0.763 Sum_probs=34.5
Q ss_pred cccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCccccc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
+..|.||++..++.+. ++|||. -|..|-.+ ...||.||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6779999999999996 999995 48888654 347999998653
No 77
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.051 Score=54.55 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=37.9
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
.-.||+|+.-..+|..+.--|-.||..||..++. .-+.||+-..+.
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 3569999999999987555699999999999999 668999854433
No 78
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.069 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=23.8
Q ss_pred CCCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 46 ECLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 46 ~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
.|.|.|+.-||.+|++ ....||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCcc
Confidence 4999999999999999 56789999764
No 79
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.10 E-value=0.055 Score=59.24 Aligned_cols=67 Identities=31% Similarity=0.761 Sum_probs=49.9
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
..+...+.||||...+..|+. +.|.|.||..|+...+.. +...||+|+..+.. +..+..+....++.
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSK 84 (684)
T ss_pred HHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHH
Confidence 456678899999999999986 899999999999876553 34689999976665 44444444444443
No 80
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=91.72 E-value=0.63 Score=38.31 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=61.7
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|.+.|.|.- .+|.|.+.-.-=..+++|.++..||-.++.+.+++ |=+||-. . - .|+ -++
T Consensus 2 v~i~~~~~g--~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn----~-f-----~p~--------~d~ 61 (87)
T cd01612 2 VTIRFKPIG--SAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN----S-F-----APS--------PDE 61 (87)
T ss_pred eEEEEEECC--CCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC----c-c-----CCC--------chh
Confidence 345555554 37999988888899999999999999999997777 7677621 1 1 122 245
Q ss_pred hhhcccccccCCCCceeehhhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQK 400 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~~ 400 (403)
|+++|+..| .-.|.|+|.|..-
T Consensus 62 ~~g~LY~~~-~~dGfLyi~Ys~~ 83 (87)
T cd01612 62 NVGNLYRCF-GTNGELIVSYCKT 83 (87)
T ss_pred HHHHHHHhc-CCCCEEEEEEeCc
Confidence 999999999 6799999999753
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=0.077 Score=59.00 Aligned_cols=41 Identities=22% Similarity=0.660 Sum_probs=36.3
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
.-.|..|...+.-|+....|||.|++.|+. .+...||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 457999999999998878999999999998 36678999987
No 82
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=91.29 E-value=0.52 Score=40.62 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=66.8
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|-+++-....-.+|.|.+.-.-=..+++|.++..+|-.++.+.+++ |=+||- . . . |+ -+.
T Consensus 25 iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn--~--~--~-----p~--------~~~ 85 (112)
T cd01611 25 IPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVN--N--S--L-----PP--------TSA 85 (112)
T ss_pred eEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEEC--C--c--c-----CC--------chh
Confidence 6667777777889999998888899999999999999999987777 555551 1 1 1 21 247
Q ss_pred hhhcccccccCCCCceeehhhhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQKQ 401 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~~~ 401 (403)
||++|+..+-+..|-|+|.|+.-+
T Consensus 86 ~~~~lY~~~kd~DGfLyl~Ys~~~ 109 (112)
T cd01611 86 TMSQLYEEHKDEDGFLYMTYSSEE 109 (112)
T ss_pred HHHHHHHHhCCCCCEEEEEEeccc
Confidence 899999999888999999998644
No 83
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.79 E-value=0.14 Score=51.31 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=37.6
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 25 l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+.||||.+.+..|+.--+=||.-|..|-.+. ...||.|+.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc
Confidence 44568899999999999852233799999997643 3579999998874
No 84
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=0.12 Score=55.94 Aligned_cols=41 Identities=24% Similarity=0.690 Sum_probs=33.6
Q ss_pred cccccccccccccccc----cccccCCCCCcccHHHHhhhhhcCCCCCC
Q 015679 24 EIRKDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECP 68 (403)
Q Consensus 24 ~l~eel~CpIClel~~----dPvtll~CgH~FC~~CI~~~l~~~~~~CP 68 (403)
.+.+.+.|+||+..|. .||. +-|||+.|..|+....+ ..||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC
Confidence 4456688999988886 7897 88999999999988766 4677
No 85
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.63 E-value=0.081 Score=43.77 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=27.4
Q ss_pred ccccccccccccccccc-ccccCCCCCcccHHHHhh
Q 015679 24 EIRKDVQCPICLGIIKK-TRTVMECLHRFCRECIDK 58 (403)
Q Consensus 24 ~l~eel~CpIClel~~d-Pvtll~CgH~FC~~CI~~ 58 (403)
.+.+.-.|++|...+.+ +..+.||||.|+..|+.+
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 34556779999988874 455689999999999863
No 86
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.19 Score=51.68 Aligned_cols=50 Identities=16% Similarity=0.422 Sum_probs=40.6
Q ss_pred cccccccccccccccc---cccccCCCCCcccHHHHhhhhhcCC--CCCCCCcccc
Q 015679 24 EIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGN--NECPACRTHC 74 (403)
Q Consensus 24 ~l~eel~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~ 74 (403)
.++..|.|||=.+--. .|+. +.|||..|..-|.+..+.+. ..||.|-...
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cccceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4677899998665443 5776 99999999999999998776 7899996644
No 87
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.58 E-value=0.14 Score=37.74 Aligned_cols=44 Identities=20% Similarity=0.567 Sum_probs=24.2
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhh----cCCCCCCCCccc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 73 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 73 (403)
+.|||....+..|+....|.|.-|.+ +..|+. .+...||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 68999999999999888999998765 333433 345689999763
No 88
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.25 E-value=0.22 Score=45.31 Aligned_cols=34 Identities=26% Similarity=0.689 Sum_probs=24.0
Q ss_pred ccccccccccccccccccCC------------CCCcc-cHHHHhhhhh
Q 015679 27 KDVQCPICLGIIKKTRTVME------------CLHRF-CRECIDKSMR 61 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~------------CgH~F-C~~CI~~~l~ 61 (403)
++.+||||++..-+.|. +- |+-.| +..|+.++-+
T Consensus 1 ed~~CpICme~PHNAVL-LlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVL-LLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEE-EEeccccCCccccccCCccchhHHHHHHHH
Confidence 46789999999999985 43 33222 5678877764
No 89
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.12 Score=53.37 Aligned_cols=47 Identities=21% Similarity=0.577 Sum_probs=34.9
Q ss_pred ccccccccccccc--cccccCCCCCcccHHHHhhhhhc-------CCCCCCCCccc
Q 015679 27 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRL-------GNNECPACRTH 73 (403)
Q Consensus 27 eel~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~-------~~~~CP~CR~~ 73 (403)
..+.|.||.+-.. .-+..+||+|.||..|+..++.- ..-.||.+.-.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4578999998665 45556899999999999988752 22368876553
No 90
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.28 E-value=0.24 Score=48.17 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=33.9
Q ss_pred ccccccccccccccccccccccccCCCCCcccHHHHhhhhh
Q 015679 21 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 61 (403)
Q Consensus 21 ~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~ 61 (403)
.-..+.+.-.|++|+..+.+||. .+=||.||++||.+++-
T Consensus 36 grDsiK~FdcCsLtLqPc~dPvi-t~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 36 GRDSIKPFDCCSLTLQPCRDPVI-TPDGYLFDREAILEYIL 75 (303)
T ss_pred cccccCCcceeeeecccccCCcc-CCCCeeeeHHHHHHHHH
Confidence 34556666778999999999995 99999999999998764
No 91
>PHA03096 p28-like protein; Provisional
Probab=89.22 E-value=0.19 Score=49.99 Aligned_cols=44 Identities=32% Similarity=0.391 Sum_probs=30.8
Q ss_pred cccccccccccc-cc------ccCCCCCcccHHHHhhhhhcC--CCCCCCCcc
Q 015679 29 VQCPICLGIIKK-TR------TVMECLHRFCRECIDKSMRLG--NNECPACRT 72 (403)
Q Consensus 29 l~CpIClel~~d-Pv------tll~CgH~FC~~CI~~~l~~~--~~~CP~CR~ 72 (403)
-.|.||++.... ++ .+..|.|.||..||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 569999986652 11 235799999999999998743 234555554
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.83 E-value=0.35 Score=34.59 Aligned_cols=40 Identities=30% Similarity=0.810 Sum_probs=24.2
Q ss_pred ccccccccccccccC--CCCCcccHHHHhhhhhcCCC-CCCCC
Q 015679 31 CPICLGIIKKTRTVM--ECLHRFCRECIDKSMRLGNN-ECPAC 70 (403)
Q Consensus 31 CpIClel~~dPvtll--~CgH~FC~~CI~~~l~~~~~-~CP~C 70 (403)
|.+|.++...-+... .|+-.++..|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888887666544 58889999999999986444 59987
No 93
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.39 E-value=0.36 Score=48.98 Aligned_cols=48 Identities=29% Similarity=0.719 Sum_probs=35.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhc-CCCCCCCCcccc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHC 74 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~ 74 (403)
++...|.||-.-+.-.. ++||+|..|--|-.+.-.. ....||.||+.-
T Consensus 59 Een~~C~ICA~~~TYs~-~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSA-RYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEE-eccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34567999998766544 4899999999997664321 446899999853
No 94
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.22 Score=49.87 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=32.0
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
-.|--|-..+..--.+++|.|.||.+|...- ..+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHH
Confidence 4577787766655456899999999997532 2468999977554
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.12 E-value=0.11 Score=60.16 Aligned_cols=51 Identities=24% Similarity=0.631 Sum_probs=42.2
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
..+-..+.|+||++++.+--.+.-|||.||..|+..|+. ....||.|...+
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIK 1198 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhh
Confidence 445556799999999996655688999999999999998 567899998544
No 96
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=87.69 E-value=1.1 Score=38.03 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=59.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|-+++-...+..+|.|.+.-.--..+++|-++...|-..+.+.+++- ||+--+. . .+....|
T Consensus 17 IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~a-lfl~Vn~--~---------------lp~~s~t 78 (104)
T PF02991_consen 17 IPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQA-LFLFVNN--T---------------LPSTSST 78 (104)
T ss_dssp EEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS--EEEEBTT--B---------------ESSTTSB
T ss_pred cEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCce-EEEEEcC--c---------------ccchhhH
Confidence 77888888888899999996678999999999999999999877653 3332211 1 1124579
Q ss_pred hhcccccccCCCCceeehhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~ 399 (403)
|++|+..+-+-.|-|+|.|+-
T Consensus 79 m~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 79 MGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp HHHHHHHHB-TTSSEEEEEES
T ss_pred HHHHHHHhCCCCCeEEEEecc
Confidence 999999999999999999974
No 97
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=83.90 E-value=1.3 Score=36.50 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=53.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCc-ccceEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQ-AEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|.+.|.|.. ..|-|++.-.-.-++-+|.++..||-.++.++ -+-|=+||-. ... |+. ++
T Consensus 2 V~v~fk~iG--~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~----sFa------Psp--------De 61 (87)
T PF04110_consen 2 VTVRFKAIG--SAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN----SFA------PSP--------DE 61 (87)
T ss_dssp EEEEEEEET--T----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE----EE---------T--------TS
T ss_pred EEEEEEecC--CCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC----ccC------CCc--------hh
Confidence 556777776 49999999999999999999999999999984 4556677622 111 222 47
Q ss_pred hhhcccccccCCCCceeehhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~ 399 (403)
+++.|+..|. .+|.|+|.|..
T Consensus 62 ~vg~L~~~f~-~~~~Liv~Ys~ 82 (87)
T PF04110_consen 62 TVGDLYRCFG-TNGELIVSYSK 82 (87)
T ss_dssp BHHHHHHHH--BTTBEEEEEES
T ss_pred HHHHHHHHhC-CCCEEEEEEec
Confidence 8999999986 69999999964
No 98
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.06 E-value=1.3 Score=42.70 Aligned_cols=47 Identities=21% Similarity=0.613 Sum_probs=36.8
Q ss_pred ccccccccccc--cccccCCCCCcccHHHHhhhhhc-------CCCCCCCCcccccC
Q 015679 29 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRL-------GNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~-------~~~~CP~CR~~~~~ 76 (403)
--|.+|...+. +.+. +-|-|.|+..|+..|... ....||.|...+..
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 45999988776 6666 789999999999999863 12479999886643
No 99
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=82.41 E-value=0.79 Score=45.46 Aligned_cols=43 Identities=28% Similarity=0.754 Sum_probs=34.8
Q ss_pred ccccccccccc---cccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 29 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 29 l~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
+-||||.+.+. ..+..++|||.-...|+......+ -+||.|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45999988765 233348999999999999988866 89999977
No 100
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=80.68 E-value=1.2 Score=45.00 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=36.6
Q ss_pred CCCCCCCCCcccccCcchHHHHHHHhhhccC--CcccceEEEEE
Q 015679 309 QCAPSLQQPYLCCQPSLSVKQLCEYVSLQTP--LQAEEVEILMV 350 (403)
Q Consensus 309 ~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~--~~~~e~e~~~~ 350 (403)
.+.+.|+++||=|---.+|-||-.|++.|+. ...-+|+|+..
T Consensus 158 ~~~k~l~~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~ 201 (331)
T KOG2660|consen 158 DTLKDLVRRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCE 201 (331)
T ss_pred ccccccccceEeccHHHHHHHHHHHHHHHhccccchhhheeecC
Confidence 4677888999999999999999999999998 47778887765
No 101
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=0.72 Score=51.87 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=32.2
Q ss_pred cccccccccccccccc-ccccccCCCCCcccHHHHhhhhh
Q 015679 23 PEIRKDVQCPICLGII-KKTRTVMECLHRFCRECIDKSMR 61 (403)
Q Consensus 23 ~~l~eel~CpIClel~-~dPvtll~CgH~FC~~CI~~~l~ 61 (403)
..++..-.|.+|...+ ..|..+.+|||.|+..||.+...
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4566778899998755 47877899999999999988765
No 102
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=79.37 E-value=1.1 Score=50.30 Aligned_cols=47 Identities=34% Similarity=0.718 Sum_probs=35.6
Q ss_pred cccccccccccccc--cc-ccCCCCCcccHHHHhhhhhc------CCCCCCCCccc
Q 015679 27 KDVQCPICLGIIKK--TR-TVMECLHRFCRECIDKSMRL------GNNECPACRTH 73 (403)
Q Consensus 27 eel~CpIClel~~d--Pv-tll~CgH~FC~~CI~~~l~~------~~~~CP~CR~~ 73 (403)
..+.|-||.+.+.. |+ ....|.|.|+..||..|... ..+.||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34679999998874 33 22348899999999999874 34689999843
No 103
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.23 E-value=1.2 Score=45.79 Aligned_cols=28 Identities=32% Similarity=0.794 Sum_probs=21.7
Q ss_pred CcccHHHHhhhhhc------------CCCCCCCCcccccC
Q 015679 49 HRFCRECIDKSMRL------------GNNECPACRTHCAS 76 (403)
Q Consensus 49 H~FC~~CI~~~l~~------------~~~~CP~CR~~~~~ 76 (403)
...|..|+.+|+.. +...||+||+.+..
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 34589999999963 34589999998764
No 104
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=78.89 E-value=2 Score=34.68 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=22.4
Q ss_pred ccccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
-.|.||.+-+- ++ |.+..|+-..|+.|..--.+.++..||.|++.+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 46999988664 22 3345688889999998877888899999998765
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=1.2 Score=46.27 Aligned_cols=43 Identities=28% Similarity=0.794 Sum_probs=29.1
Q ss_pred ccccccccc-cccccccc--cCCCCCcccHHHHhhhhhc-----CCCCCCC
Q 015679 27 KDVQCPICL-GIIKKTRT--VMECLHRFCRECIDKSMRL-----GNNECPA 69 (403)
Q Consensus 27 eel~CpICl-el~~dPvt--ll~CgH~FC~~CI~~~l~~-----~~~~CP~ 69 (403)
....|.||. +......+ +..|+|.||..|+.+++.. ....||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 357899999 44332111 2569999999999998873 2336765
No 106
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=76.16 E-value=0.77 Score=40.79 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=25.9
Q ss_pred ccccccccccccc--ccccCCCC------CcccHHHHhhhhh
Q 015679 28 DVQCPICLGIIKK--TRTVMECL------HRFCRECIDKSMR 61 (403)
Q Consensus 28 el~CpIClel~~d--Pvtll~Cg------H~FC~~CI~~~l~ 61 (403)
...|.||++.+.+ -|..+.|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5679999998876 44334565 6799999999954
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=74.79 E-value=1.1 Score=32.96 Aligned_cols=31 Identities=23% Similarity=0.790 Sum_probs=21.7
Q ss_pred CCCC-CcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 45 MECL-HRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 45 l~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+.|. |..|..|+...+. .+..||.|..+++.
T Consensus 16 i~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 4576 8889999999888 67899999998764
No 108
>PHA02862 5L protein; Provisional
Probab=74.13 E-value=2.6 Score=38.06 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=33.9
Q ss_pred ccccccccccccccccCCCCC-----cccHHHHhhhhhc-CCCCCCCCcccccC
Q 015679 29 VQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 76 (403)
-.|=||.+--.+.+ -||.. -.++.|+.+|++. ++..||.|+.++.-
T Consensus 3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36999998765443 56654 3489999999985 34589999987643
No 109
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.57 E-value=2.3 Score=39.63 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=25.6
Q ss_pred CCCCCcccHHHHhhhhhc-----CC-----CCCCCCcccccC
Q 015679 45 MECLHRFCRECIDKSMRL-----GN-----NECPACRTHCAS 76 (403)
Q Consensus 45 l~CgH~FC~~CI~~~l~~-----~~-----~~CP~CR~~~~~ 76 (403)
..||..|+.-|+..|++. .+ +.||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 359999999999999973 11 379999988764
No 110
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=1.8 Score=45.59 Aligned_cols=37 Identities=30% Similarity=0.611 Sum_probs=30.3
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL 62 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~ 62 (403)
....+|.||.+.+...+..+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 4458899999988763434899999999999998874
No 111
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=72.91 E-value=3.4 Score=49.16 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=34.3
Q ss_pred ccccccccccc-c-ccccccCCCCCcccHHHHhhhhhc---C------CCCCCCCcccccC
Q 015679 27 KDVQCPICLGI-I-KKTRTVMECLHRFCRECIDKSMRL---G------NNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel-~-~dPvtll~CgH~FC~~CI~~~l~~---~------~~~CP~CR~~~~~ 76 (403)
.+-.|-||..- + ..|..-+.|+|.|+..|..+.+.. + --.||.|..++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34568899742 2 234434899999999998776653 1 1269999887643
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.76 E-value=1.9 Score=44.72 Aligned_cols=43 Identities=35% Similarity=0.680 Sum_probs=31.7
Q ss_pred cccccccccccccc-----cccccCCCCCcccHHHHhhhhhcCCCCCCCC
Q 015679 26 RKDVQCPICLGIIK-----KTRTVMECLHRFCRECIDKSMRLGNNECPAC 70 (403)
Q Consensus 26 ~eel~CpIClel~~-----dPvtll~CgH~FC~~CI~~~l~~~~~~CP~C 70 (403)
..-..||+|...+. +-+++. |||-||..|...|.. .+..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccCc
Confidence 33567999987764 567756 999999999988876 55556544
No 113
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=70.44 E-value=5.1 Score=36.68 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=34.6
Q ss_pred ccccccccccccccccccCCCCCc-----ccHHHHhhhhhcC-CCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHR-----FCRECIDKSMRLG-NNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~-----FC~~CI~~~l~~~-~~~CP~CR~~~~~ 76 (403)
.+-.|-||.+--. +.. .||... .+.+|+.+|+..+ ...|+.|..++..
T Consensus 7 ~~~~CRIC~~~~~-~~~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVT-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-Ccc-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4567999987754 332 566553 3999999999853 4589999987643
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=2.4 Score=42.29 Aligned_cols=30 Identities=30% Similarity=0.872 Sum_probs=23.2
Q ss_pred CCCcccHHHHhhhhhc------------CCCCCCCCcccccC
Q 015679 47 CLHRFCRECIDKSMRL------------GNNECPACRTHCAS 76 (403)
Q Consensus 47 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~~~~ 76 (403)
|....|.+|+.+|+.. ++..||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4455688999999852 46689999998765
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.16 E-value=1.8 Score=42.98 Aligned_cols=34 Identities=26% Similarity=0.760 Sum_probs=28.8
Q ss_pred cccccccccccccccccCCC----CCcccHHHHhhhhhc
Q 015679 28 DVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL 62 (403)
Q Consensus 28 el~CpIClel~~dPvtll~C----gH~FC~~CI~~~l~~ 62 (403)
-|.|.+|.+-+.+... ..| .|.||+.|-.+.++.
T Consensus 268 pLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCce-eecCCCcccceecccCHHHHHh
Confidence 4889999999998775 555 699999999998875
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.17 E-value=4.4 Score=40.91 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=41.4
Q ss_pred ccccccccccccccccccccc---cccccCCCCCcccHHHHhhhhhcCC--CCCCCCcccc
Q 015679 19 FVELPEIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGN--NECPACRTHC 74 (403)
Q Consensus 19 ~v~~~~l~eel~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~ 74 (403)
+-..-.++..|.||+=.+.-. .|++ +.|||..-..-+.+..+.|. +.||.|-...
T Consensus 327 lp~~~hfHs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 327 LPKGRHFHSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred cCCcccccceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 334457888999998766554 5775 99999999999888777553 5799996643
No 117
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.22 E-value=4.4 Score=45.18 Aligned_cols=47 Identities=30% Similarity=0.687 Sum_probs=33.6
Q ss_pred cccccccccccc-cccccCCCCCcccHHHHhhhhhcCCCCCCC-Cccccc
Q 015679 28 DVQCPICLGIIK-KTRTVMECLHRFCRECIDKSMRLGNNECPA-CRTHCA 75 (403)
Q Consensus 28 el~CpIClel~~-dPvtll~CgH~FC~~CI~~~l~~~~~~CP~-CR~~~~ 75 (403)
-++|.||.-.+. ....+..|+|..+..|...||..+ -.||. |...|.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~C~ 1076 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCHCL 1076 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcCch
Confidence 356777754443 333446799999999999999954 58998 666554
No 118
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=65.10 E-value=4.6 Score=44.60 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=43.9
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhh----cCCCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
..+.--|.|||+...+.-|..-..|.|.-|+.-.. ++. ...+.||+|.+.+.- ..+..+..+..++
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL 370 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNIL 370 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccc-cchhhhHHHHHHH
Confidence 44555688999998888777767899977765432 222 134689999887764 4555555555444
No 119
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=64.19 E-value=1.2 Score=35.39 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=23.0
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
++.||.|...+. +.. +|.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~-~~~----~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE-WQG----GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE-EET----TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccE-EeC----CEEECcccccccee--cccCCCcccHHH
Confidence 467999998744 221 78889999887655 357999988764
No 120
>PLN02189 cellulose synthase
Probab=62.43 E-value=4.8 Score=46.57 Aligned_cols=46 Identities=33% Similarity=0.709 Sum_probs=36.1
Q ss_pred cccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 30 QCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 30 ~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.|.||.+.+- +| |.+-.|+-..|..|.+-=.+.++..||.|++.+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 7999998764 12 3345688889999997666778899999999875
No 121
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.08 E-value=6.3 Score=38.70 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=40.5
Q ss_pred ccccccccccccccc---ccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChh
Q 015679 26 RKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN 85 (403)
Q Consensus 26 ~eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~ 85 (403)
+-.|.|||=.-.|.. -..+.+|||.|-..-+.+.- ...|++|...+...+.+..|..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCCC
Confidence 556889997655542 22347899999988887654 4689999999887555554443
No 122
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.89 E-value=5.3 Score=31.96 Aligned_cols=33 Identities=24% Similarity=0.722 Sum_probs=25.2
Q ss_pred CCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCCh
Q 015679 48 LHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 84 (403)
Q Consensus 48 gH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~ 84 (403)
.|+||..|....+. ..||.|...+.. +.+++..
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~-RP~RPaa 60 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVA-RPIRPAA 60 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhc-CcCChHH
Confidence 48999999987776 589999988765 4555443
No 123
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.40 E-value=5 Score=38.19 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCC-cccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 31 CPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 31 CpIClel~~dPvtll~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
|-+|..--.. |.++||.| .+|..|=.. ...||.|+.+..+
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 8889876655 55699998 789999643 3469999986543
No 124
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=56.14 E-value=6.6 Score=28.45 Aligned_cols=39 Identities=31% Similarity=0.751 Sum_probs=23.1
Q ss_pred cccccccccc--ccccCCCCC-----cccHHHHhhhhhc-CCCCCCCC
Q 015679 31 CPICLGIIKK--TRTVMECLH-----RFCRECIDKSMRL-GNNECPAC 70 (403)
Q Consensus 31 CpIClel~~d--Pvtll~CgH-----~FC~~CI~~~l~~-~~~~CP~C 70 (403)
|-||++.-.+ |+ +.||.- ..+..|+.+|+.. ++..|+.|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677765442 44 367664 3489999999984 44578877
No 125
>PLN02436 cellulose synthase A
Probab=55.60 E-value=7.2 Score=45.27 Aligned_cols=46 Identities=35% Similarity=0.794 Sum_probs=35.9
Q ss_pred cccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 30 QCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 30 ~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.|.||.+.+- +| |.+-.|+-..|..|.+-=.+.++..||.|++.+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 7999998764 22 3345688889999997666778889999999875
No 126
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=22 Score=30.80 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=60.5
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhc
Q 015679 295 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQIL 373 (403)
Q Consensus 295 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (403)
.+.+|+|.- . -.+|-|++--..=-||-+|.-+--|+-.+|.+++-| |=+||-. . -.|+.
T Consensus 29 ~kV~i~l~a--i--G~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~----s------FAPsP------ 88 (116)
T KOG3439|consen 29 RKVQIRLRA--I--GDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN----S------FAPSP------ 88 (116)
T ss_pred ceEEEEEec--c--CCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC----c------cCCCc------
Confidence 455555543 2 478999998888899999999999999999998765 4555422 1 12333
Q ss_pred cccchhhcccccccCCCCceeehhhh
Q 015679 374 EGQETLAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 374 ~~~~~~~~l~~~~~~~~~~l~~~y~~ 399 (403)
+++++.|+..| ..+|+|+|.|-.
T Consensus 89 --Dq~v~~Ly~cf-~~d~~Lvl~Yc~ 111 (116)
T KOG3439|consen 89 --DQIVGNLYECF-GTDGKLVLNYCI 111 (116)
T ss_pred --hhHHHHHHHhc-CCCCEEEEEEee
Confidence 35788899988 459999999964
No 127
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=54.97 E-value=12 Score=28.53 Aligned_cols=44 Identities=20% Similarity=0.613 Sum_probs=29.2
Q ss_pred ccccccccccccc-ccCCCC--CcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 30 QCPICLGIIKKTR-TVMECL--HRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 30 ~CpIClel~~dPv-tll~Cg--H~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.|-.|...+.... ...-|. .+||..|....+. ..||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 4666765554211 002244 5899999998875 589999987764
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.52 E-value=8.2 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.541 Sum_probs=11.2
Q ss_pred ccccccccccc-ccccCCCCCcc
Q 015679 30 QCPICLGIIKK-TRTVMECLHRF 51 (403)
Q Consensus 30 ~CpIClel~~d-Pvtll~CgH~F 51 (403)
.||-|...+.. ......|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 36777655432 22223466665
No 129
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.87 E-value=12 Score=43.32 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=36.0
Q ss_pred ccccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
-.|.||.+.+- +| |.+-.|+-..|..|.+-=.+.++..||.|++.+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45999998754 22 3445688889999996666678889999999775
No 130
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=50.96 E-value=12 Score=42.06 Aligned_cols=45 Identities=11% Similarity=0.282 Sum_probs=30.0
Q ss_pred ccccccccccccccc---ccC---CCCCcccHHHHhhhhhc-----CCCCCCCCcc
Q 015679 28 DVQCPICLGIIKKTR---TVM---ECLHRFCRECIDKSMRL-----GNNECPACRT 72 (403)
Q Consensus 28 el~CpIClel~~dPv---tll---~CgH~FC~~CI~~~l~~-----~~~~CP~CR~ 72 (403)
..+|++|.--+.+|+ .+. .|+|.||..||..|... ..-.|+.|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 456777766565522 112 39999999999999863 2235777765
No 131
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=50.07 E-value=32 Score=29.99 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=14.8
Q ss_pred ccCccccCCCCCCCCCCCccCcCC
Q 015679 159 HLRRRRNSRGTEHQGSEDNEDEND 182 (403)
Q Consensus 159 ~~R~Rr~~r~~~~~~~e~~~de~~ 182 (403)
++|-|-+.+-+...+++|++|||+
T Consensus 125 p~rq~d~~p~~~~~~~dd~e~ed~ 148 (150)
T PF06084_consen 125 PCRQNDNSPPIEPNGTDDEEDEDD 148 (150)
T ss_pred cccccCCCCcccCCCCCccccccc
Confidence 345566677777777666655544
No 132
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.34 E-value=11 Score=44.01 Aligned_cols=47 Identities=28% Similarity=0.667 Sum_probs=36.2
Q ss_pred ccccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
-.|.||.+.+- +| |.+-.|+-..|+.|.+-=.++++..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 37999998754 12 4445688889999996656678899999999775
No 133
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=47.54 E-value=26 Score=26.72 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=36.6
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.+.+.++++++++ +...|+.||..|-+.++.++.+++++.-|+.
T Consensus 2 ~i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 2 LIKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 4566677888775 5788999999999999999999999877763
No 134
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=46.75 E-value=10 Score=36.31 Aligned_cols=45 Identities=20% Similarity=0.565 Sum_probs=36.3
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
-.|.+|..+..--+.+-.|+-.++..|+..+++. ...||.|..-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 4699999988777766678878899999999984 67899995533
No 135
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=46.31 E-value=24 Score=26.89 Aligned_cols=44 Identities=7% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
++.+-.++++.+. +...|+.||..|-+.|+.++..++++.-|+.
T Consensus 2 ~i~v~~~~g~~~~------~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 2 QIFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEEcCCCCEEE------EEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 3455666776653 5788999999999999999999999888774
No 136
>PLN02400 cellulose synthase
Probab=45.77 E-value=11 Score=43.94 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=35.7
Q ss_pred cccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 30 QCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 30 ~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.|.||.+.+- +| |.+..|+-..|+.|.+-=.+.++..||.|++.+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 7999998754 12 3445788889999996555668889999999875
No 137
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.57 E-value=21 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.719 Sum_probs=15.2
Q ss_pred ccCCCCCcccHHHHhhhhhcCCCCCCCCc
Q 015679 43 TVMECLHRFCRECIDKSMRLGNNECPACR 71 (403)
Q Consensus 43 tll~CgH~FC~~CI~~~l~~~~~~CP~CR 71 (403)
....|++.||..|=. ++.+....||-|-
T Consensus 23 ~C~~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcCh-hhhccccCCcCCC
Confidence 345799999999953 3344566899884
No 138
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=44.75 E-value=15 Score=29.67 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=31.1
Q ss_pred cccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccccccCCCCceeeh
Q 015679 320 CCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILA 396 (403)
Q Consensus 320 ~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 396 (403)
.|-|+=+|.+|.+-|+.+++++.+...+|.-.+.. +++.. ....||++|-- .||+|+..
T Consensus 19 e~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~-------------~~l~s-~~~~tl~~lgl----kHGdmlyL 77 (80)
T PF11543_consen 19 EVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNK-------------EELKS-SDSKTLSSLGL----KHGDMLYL 77 (80)
T ss_dssp EE-TTSBHHHHHHHHHHHS---TTT---BSSGGGG-------------GCSSS--TT-CCCCT-------TT-EEE-
T ss_pred EcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCC-------------ccccc-CCcCCHHHcCC----CCccEEEE
Confidence 56799999999999999999999977766433221 11110 24567776644 48988753
No 139
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.11 E-value=4 Score=40.17 Aligned_cols=44 Identities=30% Similarity=0.627 Sum_probs=35.1
Q ss_pred ccccccccccc------cccccCC--------CCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 29 VQCPICLGIIK------KTRTVME--------CLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 29 l~CpIClel~~------dPvtll~--------CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
-.|.||...+. .|.. +. |||+.|..|+...+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~v-l~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLV-LSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhH-HHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45889987665 3664 56 999999999999887655789999874
No 140
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.41 E-value=20 Score=31.08 Aligned_cols=42 Identities=26% Similarity=0.512 Sum_probs=28.6
Q ss_pred cccccccccccccc-------------ccCCCCCcccHHHHhhhhhcCCCCCCCCc
Q 015679 29 VQCPICLGIIKKTR-------------TVMECLHRFCRECIDKSMRLGNNECPACR 71 (403)
Q Consensus 29 l~CpIClel~~dPv-------------tll~CgH~FC~~CI~~~l~~~~~~CP~CR 71 (403)
..|--|+..|..+. ....|.+.||..|=.-+-. ....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 45888988776541 2467999999988543333 556799885
No 141
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.35 E-value=14 Score=41.16 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=38.2
Q ss_pred ccccccccccccccccc---------cccCCCCCcc--------------------cHHHHhhhhhc-------CCCCCC
Q 015679 25 IRKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECP 68 (403)
Q Consensus 25 l~eel~CpIClel~~dP---------vtll~CgH~F--------------------C~~CI~~~l~~-------~~~~CP 68 (403)
.-+-..|+-|+.-+.+| +.++.||.+| |..|-.++-.- ....||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 34557899999888766 3457899988 99999877642 234799
Q ss_pred CCcccccC
Q 015679 69 ACRTHCAS 76 (403)
Q Consensus 69 ~CR~~~~~ 76 (403)
.|.-.+..
T Consensus 178 ~CGP~~~l 185 (750)
T COG0068 178 KCGPHLFL 185 (750)
T ss_pred ccCCCeEE
Confidence 99876543
No 142
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.24 E-value=16 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.587 Sum_probs=23.1
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhc-CCCCCCCCcc
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRT 72 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~CR~ 72 (403)
+.+.||.|...|.. .. ++.-|....... .+..||.|..
T Consensus 1 ~~f~CP~C~~~~~~-~~-------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-SS-------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-HH-------HHHHHHhHCcCCCCCccCCCchh
Confidence 35789999995443 22 233355544432 3468999976
No 143
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.07 E-value=19 Score=36.58 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=22.2
Q ss_pred cCCCCCcccHHHHhhhhhcC---------CCCCCCCcccccC
Q 015679 44 VMECLHRFCRECIDKSMRLG---------NNECPACRTHCAS 76 (403)
Q Consensus 44 ll~CgH~FC~~CI~~~l~~~---------~~~CP~CR~~~~~ 76 (403)
+.|||| .|.+=-..+|.+- -..||.|.+.+..
T Consensus 375 F~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 375 FNPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 358999 5666666777631 1369999887754
No 144
>PRK04023 DNA polymerase II large subunit; Validated
Probab=42.05 E-value=23 Score=41.07 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=32.2
Q ss_pred cccccccccccccccccCCCCC-----cccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH-----~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...|+-|........ +..||. .||..|-.. . ....||.|......
T Consensus 626 ~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 626 RRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred CccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCc
Confidence 457999998865544 477984 599999332 2 34579999987764
No 145
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.66 E-value=2.1 Score=36.87 Aligned_cols=46 Identities=24% Similarity=0.549 Sum_probs=29.4
Q ss_pred ccccccccccccc----cccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 27 KDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 27 eel~CpIClel~~----dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
.+-.|.+|...|. ....+..|.|.+|..|-...-+.....|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 3568999987543 345557899999999976522223446887765
No 146
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=41.32 E-value=34 Score=29.37 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=40.1
Q ss_pred ceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhcccc
Q 015679 297 LDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQ 376 (403)
Q Consensus 297 ~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (403)
+.|.|.|+ ||..|--+ .|-|+.||.+|.++|-.+-+-..++ + ..+.... -....- .+|+..
T Consensus 3 i~lkf~l~--~G~d~~~~-----~~~~~~TV~~lKe~i~~~WP~d~~~------~-p~s~~~l---RLI~~G--riL~d~ 63 (111)
T PF13881_consen 3 IELKFRLA--DGKDIGPF-----RFDPSTTVADLKERIWAEWPEDWEE------R-PKSPSDL---RLIYAG--RILEDN 63 (111)
T ss_dssp EEEEEEET--TS-EEEEE-----EE-TTSBHHHHHHHHHHSSSTTSSS------T-T-SGGGE---EEEETT--EEE-SS
T ss_pred EEEEEEEe--CCCccccc-----ccCccChHHHHHHHHHHHCcccccc------C-CCChhhE---EEEeCC--eecCCc
Confidence 34445554 88844333 5889999999999999887432221 0 0000000 000011 488999
Q ss_pred chhhcccccccCCCC
Q 015679 377 ETLAGLRVNHTSNTD 391 (403)
Q Consensus 377 ~~~~~l~~~~~~~~~ 391 (403)
+||++++..+....|
T Consensus 64 ~tL~~~~~~~~~~~~ 78 (111)
T PF13881_consen 64 KTLSDCRLPSGETPG 78 (111)
T ss_dssp SBTGGGT--TTSETT
T ss_pred CcHHHhCCCCCCCCC
Confidence 999999876545444
No 147
>PLN02195 cellulose synthase A
Probab=41.24 E-value=18 Score=41.89 Aligned_cols=46 Identities=20% Similarity=0.577 Sum_probs=35.4
Q ss_pred cccccccccc-----cc-cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 30 QCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 30 ~CpIClel~~-----dP-vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.|.||.+.+- +| |.+-.|+-..|+.|.+-=-++++..||.|++.+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999998553 22 3445799889999996555668889999999775
No 148
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=41.21 E-value=35 Score=29.95 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=49.2
Q ss_pred CCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccccccCCCCceee
Q 015679 316 QPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLIL 395 (403)
Q Consensus 316 ~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 395 (403)
+=||-=..+++|-++...|-..+.+.++++ .+.+.+. .| .-..|+++|+..+-.-.|-|++
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn~----------lp--------~~s~~mg~lYe~~KDeDGFLYi 102 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKV-TLAIEGS----------TP--------AVTATVGDIADACKRDDGFLYV 102 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHE-EEEECCc----------cC--------CccchHHHHHHHhcCCCCeEEE
Confidence 336557789999999999999999999985 3333221 11 1336899999999889999999
Q ss_pred hhhh
Q 015679 396 AYRQ 399 (403)
Q Consensus 396 ~y~~ 399 (403)
.|.-
T Consensus 103 ~Ys~ 106 (121)
T PTZ00380 103 SVRT 106 (121)
T ss_pred EEcc
Confidence 9974
No 149
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.58 E-value=22 Score=35.15 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=34.4
Q ss_pred cccccccccccccccccccc---cCCCC-----CcccHHHHhhhhhcCC-------CCCCCCccccc
Q 015679 24 EIRKDVQCPICLGIIKKTRT---VMECL-----HRFCRECIDKSMRLGN-------NECPACRTHCA 75 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvt---ll~Cg-----H~FC~~CI~~~l~~~~-------~~CP~CR~~~~ 75 (403)
.-+.+-.|-||...=.+-.. +-||. |=.+..|+.+|+.++. ..||.|++...
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 44456789999875543211 13554 4458999999997521 26999999764
No 150
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=40.28 E-value=6.7 Score=28.99 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=19.6
Q ss_pred ccccc--cccccc-----cc--cccCCCCCcccHHHHhhhh
Q 015679 29 VQCPI--CLGIIK-----KT--RTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 29 l~CpI--Clel~~-----dP--vtll~CgH~FC~~CI~~~l 60 (403)
..||- |..++. .. ++...|++.||..|-..|-
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 47987 988776 22 5555699999999987763
No 151
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.22 E-value=23 Score=36.08 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=34.6
Q ss_pred ccccccccccc---cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 29 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
-.||||.+.+. .+..-.+|++..|..|+..... +...||.|+++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCcccc
Confidence 56999998662 1111135899999999988776 77899999986643
No 152
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.49 E-value=11 Score=37.30 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=33.9
Q ss_pred cccccccccccccc---------ccccCCCCCcccHHHHhh-hhh---------cCCCCCCCCcccccCCC
Q 015679 27 KDVQCPICLGIIKK---------TRTVMECLHRFCRECIDK-SMR---------LGNNECPACRTHCASRR 78 (403)
Q Consensus 27 eel~CpIClel~~d---------Pvtll~CgH~FC~~CI~~-~l~---------~~~~~CP~CR~~~~~~~ 78 (403)
..+.|++|...+.. .-+ ++|...||..-+.+ |+- ++.+.||.|.+.|..+.
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS 229 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS 229 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH
Confidence 44668888776651 223 57888888877765 442 24568999999887643
No 153
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.21 E-value=11 Score=41.17 Aligned_cols=27 Identities=30% Similarity=0.840 Sum_probs=19.4
Q ss_pred cccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 42 RTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 42 vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
..+..|++.|+..|+.+ .+..||.|-.
T Consensus 532 ~rC~~C~avfH~~C~~r----~s~~CPrC~R 558 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR----KSPCCPRCER 558 (580)
T ss_pred eeHHHHHHHHHHHHHhc----cCCCCCchHH
Confidence 34456999999999865 3445999943
No 154
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=37.48 E-value=66 Score=27.90 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=60.3
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhh
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLA 380 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (403)
+..-=-.+..+|.|.|==.--.--|+|-|+..-|-..+.|.++.-=+++|.+..... -.+++
T Consensus 31 VIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~t------------------s~~ms 92 (116)
T KOG1654|consen 31 VIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPT------------------SATMS 92 (116)
T ss_pred EEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcc------------------hhhHH
Confidence 333334568899999844445566999999999999999999998888887664332 13567
Q ss_pred cccccccCCCCceeehhhh
Q 015679 381 GLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 381 ~l~~~~~~~~~~l~~~y~~ 399 (403)
.|+...-.-.|-|++.|.-
T Consensus 93 ~~Ye~~kdeDgFLYm~Ys~ 111 (116)
T KOG1654|consen 93 ALYEEEKDEDGFLYMTYSG 111 (116)
T ss_pred HHHHhhcccCcEEEEEecc
Confidence 7777777778899999863
No 155
>PF12773 DZR: Double zinc ribbon
Probab=37.44 E-value=33 Score=24.47 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=16.0
Q ss_pred CcccHHHHhhhh--hcCCCCCCCCccccc
Q 015679 49 HRFCRECIDKSM--RLGNNECPACRTHCA 75 (403)
Q Consensus 49 H~FC~~CI~~~l--~~~~~~CP~CR~~~~ 75 (403)
-.||..|=.... ......||.|...+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 346666655554 223457888877654
No 156
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=37.23 E-value=17 Score=28.53 Aligned_cols=12 Identities=50% Similarity=1.173 Sum_probs=9.1
Q ss_pred cccHHHHhhhhh
Q 015679 50 RFCRECIDKSMR 61 (403)
Q Consensus 50 ~FC~~CI~~~l~ 61 (403)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 157
>PF14353 CpXC: CpXC protein
Probab=35.80 E-value=28 Score=30.01 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=24.8
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCCcccccC
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 76 (403)
++||-|...+.-.+- +.-.-..=..=..+.+.. ....||.|...+..
T Consensus 2 itCP~C~~~~~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW-TSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 678888887764442 111111112223333331 13489999987643
No 158
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.50 E-value=12 Score=38.87 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=0.0
Q ss_pred cccccccccccc--------c---------c-cccCCCCCcccHHHHhhhhhc-----C----CCCCCCCcccccC
Q 015679 28 DVQCPICLGIIK--------K---------T-RTVMECLHRFCRECIDKSMRL-----G----NNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~--------d---------P-vtll~CgH~FC~~CI~~~l~~-----~----~~~CP~CR~~~~~ 76 (403)
.-.||+|...-. + | ..+.||||. |.+=..++|.+ + ...||.|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999975321 1 1 123589995 44445555542 1 1479999988764
No 159
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=34.25 E-value=35 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=27.4
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEEE
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEIL 348 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~~ 348 (403)
|...|+.||..|-+.|+.+.++++++.-|+
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li 42 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQRWF 42 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEE
Confidence 678899999999999999999999998775
No 160
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=33.59 E-value=45 Score=25.01 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=38.0
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhccccc
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVN 385 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 385 (403)
+.+.|+-||..|-+.|+.++.++++++-|+..- ..|+++.||+++...
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G-------------------~~L~d~~tL~~~~i~ 57 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNG-------------------KELDDDKTLSDYGIK 57 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETT-------------------EEESTTSBTGGGTTS
T ss_pred EEECCCCCHHHhhhhcccccccccccceeeeee-------------------ecccCcCcHHHcCCC
Confidence 467899999999999999999999999887521 345677788776443
No 162
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.55 E-value=29 Score=26.21 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=24.1
Q ss_pred cccccccccccc--cc-cccCCCCCcccHHHHhh
Q 015679 28 DVQCPICLGIIK--KT-RTVMECLHRFCRECIDK 58 (403)
Q Consensus 28 el~CpIClel~~--dP-vtll~CgH~FC~~CI~~ 58 (403)
.-.|++|.+.|. +. |....||-.+++.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999999994 44 44467999999999764
No 163
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.41 E-value=36 Score=28.94 Aligned_cols=28 Identities=32% Similarity=0.821 Sum_probs=21.4
Q ss_pred CCcccHHHHhhhhhc--------CCCCCCCCccccc
Q 015679 48 LHRFCRECIDKSMRL--------GNNECPACRTHCA 75 (403)
Q Consensus 48 gH~FC~~CI~~~l~~--------~~~~CP~CR~~~~ 75 (403)
.-.||..||.....+ ....||.||..+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 667999998776642 4568999998653
No 164
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=33.20 E-value=12 Score=27.64 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=22.2
Q ss_pred cccc--cccccccc-------ccccCCCCCcccHHHHhhhhh
Q 015679 29 VQCP--ICLGIIKK-------TRTVMECLHRFCRECIDKSMR 61 (403)
Q Consensus 29 l~Cp--IClel~~d-------Pvtll~CgH~FC~~CI~~~l~ 61 (403)
.-|| -|..++.. .+....|++.||..|...|-.
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 3588 78655543 233336899999999887743
No 165
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=32.05 E-value=58 Score=25.72 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=39.2
Q ss_pred ccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccccccCCCCceeehh
Q 015679 321 CQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAY 397 (403)
Q Consensus 321 c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~y 397 (403)
=.|+.||..|-+-|+.+++.+++..-|| .+.. ...++.||+.... .++|+++..|
T Consensus 19 v~~~~TV~~lK~kI~~~~gip~~~QrL~--~G~~-----------------L~dD~~tL~~ygi---~~~g~~~~l~ 73 (75)
T cd01799 19 VRPDMTVAQLKDKVFLDYGFPPAVQRWV--IGQR-----------------LARDQETLYSHGI---RTNGDSAFLY 73 (75)
T ss_pred ECCCCcHHHHHHHHHHHHCcCHHHEEEE--cCCe-----------------eCCCcCCHHHcCC---CCCCCEEEEE
Confidence 3588999999999999999999987662 2110 1245678877643 3478887766
No 166
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.48 E-value=1e+02 Score=29.67 Aligned_cols=22 Identities=32% Similarity=0.961 Sum_probs=15.9
Q ss_pred cccccccccccccccCCCCCcccHHHHhhhh
Q 015679 30 QCPICLGIIKKTRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 30 ~CpIClel~~dPvtll~CgH~FC~~CI~~~l 60 (403)
.|+||. ....+.||..|+...+
T Consensus 1 ~C~iC~---------~~~~~~~C~~C~~~~L 22 (302)
T PF10186_consen 1 QCPICH---------NSRRRFYCANCVNNRL 22 (302)
T ss_pred CCCCCC---------CCCCCeECHHHHHHHH
Confidence 499999 2345668999997744
No 167
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=31.14 E-value=25 Score=39.51 Aligned_cols=49 Identities=22% Similarity=0.538 Sum_probs=37.1
Q ss_pred ccccccccccccccc---------cccCCCCCcc--------------------cHHHHhhhhhc-------CCCCCCCC
Q 015679 27 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 70 (403)
Q Consensus 27 eel~CpIClel~~dP---------vtll~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 70 (403)
+-..|+-|+.-+.+| +.++.||..| |..|..++... ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 446799999888876 4567899888 99999998652 22479999
Q ss_pred ccccc
Q 015679 71 RTHCA 75 (403)
Q Consensus 71 R~~~~ 75 (403)
.-.+.
T Consensus 147 gp~l~ 151 (711)
T TIGR00143 147 GPQLN 151 (711)
T ss_pred CcEEE
Confidence 87664
No 168
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.83 E-value=1.1e+02 Score=33.90 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=52.6
Q ss_pred cchhhHHHHHHHHHhhhcccccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecc
Q 015679 275 SRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKER 353 (403)
Q Consensus 275 ~r~~~~~kl~~~l~~~~~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~ 353 (403)
.|...|..|-..+.-..+....+-|.+.|||.-=..-|++ ..|-|+=..+-.+++|-.=+.+..+.-.|+|+.+.
T Consensus 234 Dr~eqI~~L~~L~~ia~~~~~~i~Il~~lIsa~FD~~~~~----~~~M~~~~W~~~~~~i~~Ll~lL~~n~~~~l~~~~ 308 (595)
T PF05470_consen 234 DRQEQIRQLEKLLEIAKTPYQKIEILLHLISARFDYNSSI----SDYMPIEQWKKCLNNINELLDLLEENPNIVLSEEV 308 (595)
T ss_pred cHHHHHHHHHHHHHHHcCcccchhHHHhhhHHHHccCCcc----ccCcCHHHHHHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 4446666655555555566668889999999744444444 46778888888888888888888888888885433
No 169
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.61 E-value=11 Score=37.31 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=21.0
Q ss_pred cccccccccccccccccCC----CCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 28 DVQCPICLGIIKKTRTVME----CLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 28 el~CpIClel~~dPvtll~----CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
.-.||+|.....-.+..-. -.|-+|..|-..|-- .-..||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 3689999987654442111 235679999999876 34679999764
No 170
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.40 E-value=31 Score=25.09 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=22.9
Q ss_pred ccccccccccc---cccccCCCCCcccHHHHhhhhh
Q 015679 29 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMR 61 (403)
Q Consensus 29 l~CpIClel~~---dPvtll~CgH~FC~~CI~~~l~ 61 (403)
-.|++|...|. .......||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 35888866444 2333467999999999876654
No 171
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.78 E-value=31 Score=36.59 Aligned_cols=52 Identities=23% Similarity=0.618 Sum_probs=38.9
Q ss_pred cccccccccccccccc-cccccccccc-CCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 19 FVELPEIRKDVQCPIC-LGIIKKTRTV-MECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 19 ~v~~~~l~eel~CpIC-lel~~dPvtl-l~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
..+.-.+.++++|++| ...|.+...+ -.|.-+||..||...+.. ..|+.|.+
T Consensus 210 a~~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~ 263 (448)
T KOG0314|consen 210 ARTVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGA 263 (448)
T ss_pred hHHhccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchh
Confidence 4556677889999999 7888877753 358899999999887763 35566544
No 172
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.31 E-value=44 Score=31.51 Aligned_cols=39 Identities=33% Similarity=0.749 Sum_probs=25.5
Q ss_pred ccccccccc--ccc-----cccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 28 DVQCPICLG--IIK-----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 28 el~CpICle--l~~-----dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
-+.|.+|.+ ++. ..+.+..|+..|+..|..+ ..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 356777863 221 2233356999999999862 46999954
No 174
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.13 E-value=55 Score=36.94 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=34.5
Q ss_pred cccccccccccc-ccccCCCCCcccHHHHhhhhhcCCCCCCC--CcccccC
Q 015679 29 VQCPICLGIIKK-TRTVMECLHRFCRECIDKSMRLGNNECPA--CRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~d-Pvtll~CgH~FC~~CI~~~l~~~~~~CP~--CR~~~~~ 76 (403)
..|.+|..+++. -+.+.-|||.-+..|+..|+. +...||. |...+..
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHY 829 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccc
Confidence 468888777662 222345999999999999998 6678887 7766653
No 175
>PRK00647 hypothetical protein; Validated
Probab=26.88 E-value=50 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=31.3
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEE
Q 015679 295 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEIL 348 (403)
Q Consensus 295 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~ 348 (403)
+.|.|+|.=.|.|+.- =++|++|+|.++.++...|+|.
T Consensus 27 ~~Lkvrv~ApPvdGKA----------------N~ali~~LAk~l~vpks~I~Iv 64 (96)
T PRK00647 27 GILKVRVTEVPEKGKA----------------NDAVIALLAKFLSLPKRDVTLI 64 (96)
T ss_pred CEEEEEEecCCCCChH----------------HHHHHHHHHHHhCCChhhEEEE
Confidence 5677777777777753 4799999999999999999975
No 176
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.62 E-value=45 Score=22.15 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=6.6
Q ss_pred CCCCCCCcc
Q 015679 64 NNECPACRT 72 (403)
Q Consensus 64 ~~~CP~CR~ 72 (403)
...||.|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 457888866
No 177
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=26.60 E-value=69 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.2
Q ss_pred ccccCcchHHHHHHHhhhccCC--cccceEEEE
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPL--QAEEVEILM 349 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~--~~~e~e~~~ 349 (403)
|.+.|+.||..|-+.++.++++ +++..-|+.
T Consensus 15 l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~ 47 (77)
T cd01805 15 IEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY 47 (77)
T ss_pred EEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE
Confidence 5789999999999999999998 888876663
No 178
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=21 Score=35.91 Aligned_cols=51 Identities=27% Similarity=0.713 Sum_probs=41.1
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 25 l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.-.|-||...+.-|-..-.|+|.||.-|...|.. ....||.|+..+..
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~-~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFA-MGNDCPDCRGKISP 152 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhhh-hhhccchhhcCcCc
Confidence 3455678999999998887667999999999988887 44679999887653
No 179
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=25.72 E-value=90 Score=23.34 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=33.5
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
+.+-.+++++++ +...|+.||..|.+-|+.++..+++..-|+.
T Consensus 3 i~vk~~~g~~~~------~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 3 IKVKTLDSQTHT------FTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEEEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 334445555543 5778999999999999999999999887775
No 180
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.59 E-value=26 Score=38.97 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=34.1
Q ss_pred cccccccccccccccCCCCC-cccHHHHhhhhhcC-----CCCCCCCcccc
Q 015679 30 QCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLG-----NNECPACRTHC 74 (403)
Q Consensus 30 ~CpIClel~~dPvtll~CgH-~FC~~CI~~~l~~~-----~~~CP~CR~~~ 74 (403)
.|+||-.-+.-+.. -.||| ..|..|..+..... ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 49999887777775 78999 99999998876532 34679998854
No 181
>PTZ00044 ubiquitin; Provisional
Probab=25.23 E-value=74 Score=24.39 Aligned_cols=42 Identities=7% Similarity=0.214 Sum_probs=33.4
Q ss_pred EEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 302 MLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 302 ~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.+-.+++++++ |...|+.||..|-+.|+.++.+++++.-|+.
T Consensus 4 ~vk~~~G~~~~------l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (76)
T PTZ00044 4 LIKTLTGKKQS------FNFEPDNTVQQVKMALQEKEGIDVKQIRLIY 45 (76)
T ss_pred EEEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 33445666544 3667999999999999999999999988874
No 182
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=25.20 E-value=59 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.4
Q ss_pred HHHHHHhhhccCCcccceEEE
Q 015679 328 KQLCEYVSLQTPLQAEEVEIL 348 (403)
Q Consensus 328 ~~l~~~va~~~~~~~~e~e~~ 348 (403)
++|++|+|..+.++...|+|.
T Consensus 43 ~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEEC
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 789999999999999999974
No 183
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=25.11 E-value=1.4e+02 Score=31.82 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=12.3
Q ss_pred CCCCCcccCcccc-cccCCCCCCccc
Q 015679 239 GISPGLVWNPEML-AWGRGGTRSNTR 263 (403)
Q Consensus 239 ~~s~~~~~~~~~~-~~g~~g~rs~~r 263 (403)
..|-...|.+.+. |-...++....|
T Consensus 118 ~~sd~~~WtP~~~t~~~~~~~~~~~r 143 (458)
T PF10446_consen 118 DGSDYEFWTPGATTAATSSSHLDVRR 143 (458)
T ss_pred ccccceeecccccccccccccccccc
Confidence 3455666766654 334343333333
No 184
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=24.79 E-value=63 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.9
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEEE
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEIL 348 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~~ 348 (403)
|-+.|+.||+.|-+.||.++.+++++.-|+
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 42 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVI 42 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEE
Confidence 577899999999999999999999988764
No 185
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.91 E-value=44 Score=34.16 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=10.9
Q ss_pred CCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 48 LHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 48 gH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
+-+||+.|-..........|+.|+..+
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVF 355 (378)
T ss_pred CCcceeeeccccCCCCcEEchhcccee
Confidence 444455553322222223455554443
No 186
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.47 E-value=23 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=16.7
Q ss_pred ccccccccccccc---cccccCCCCCcccHHHHhhhh
Q 015679 27 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 27 eel~CpIClel~~---dPvtll~CgH~FC~~CI~~~l 60 (403)
+.-.|.+|...|. .....-.||+.||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3467999998774 222234699999999986554
No 187
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.00 E-value=41 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=9.9
Q ss_pred cccccccccccccc
Q 015679 29 VQCPICLGIIKKTR 42 (403)
Q Consensus 29 l~CpIClel~~dPv 42 (403)
.+||-|...|.-|-
T Consensus 3 i~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 3 ITCPNCQTRFRVPD 16 (37)
T ss_pred EECCCCCceEEcCH
Confidence 56888888777443
No 188
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.98 E-value=30 Score=34.92 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=29.8
Q ss_pred cccccccccccccccccC---CCC--CcccHHHHhhhhhcCCCCCCCCcc
Q 015679 28 DVQCPICLGIIKKTRTVM---ECL--HRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 28 el~CpIClel~~dPvtll---~Cg--H~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
.-.||+|.....-.+... .=| +-+|..|-..|-- .-..||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 458999998765433211 123 4569999888866 4468999976
No 189
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.96 E-value=31 Score=35.21 Aligned_cols=41 Identities=24% Similarity=0.607 Sum_probs=23.1
Q ss_pred cccccccccc--cccccCCCCCcccHHHHhhhhhcCCCCCCCCc
Q 015679 30 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACR 71 (403)
Q Consensus 30 ~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR 71 (403)
.|-.|.+-.. .-+.+-.|.+.||..|=. ++...-..||-|-
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcC
Confidence 3666633222 122335688888888843 3333445788885
No 190
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=21.63 E-value=1.2e+02 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=31.4
Q ss_pred cccCcchHHHHHHHhhhccCC-cccceEEEEEeccc
Q 015679 320 CCQPSLSVKQLCEYVSLQTPL-QAEEVEILMVKERL 354 (403)
Q Consensus 320 ~c~pt~~v~~l~~~va~~~~~-~~~e~e~~~~~~~~ 354 (403)
-=+|..|++-||+-+|.-..+ ++|+-=+++.++..
T Consensus 19 ~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~ 54 (87)
T cd01776 19 LVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEET 54 (87)
T ss_pred ecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCc
Confidence 457999999999999999999 89999999998763
No 191
>PRK00420 hypothetical protein; Validated
Probab=21.53 E-value=32 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=8.7
Q ss_pred CCCCCCCCccccc
Q 015679 63 GNNECPACRTHCA 75 (403)
Q Consensus 63 ~~~~CP~CR~~~~ 75 (403)
+...||.|...+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4457888877543
No 192
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=50 Score=33.66 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=0.0
Q ss_pred CCCcccHHHHhhhhh--------------------------------------cCCCCCCCCcccc
Q 015679 47 CLHRFCRECIDKSMR--------------------------------------LGNNECPACRTHC 74 (403)
Q Consensus 47 CgH~FC~~CI~~~l~--------------------------------------~~~~~CP~CR~~~ 74 (403)
||-.||+.|.+.+-. .....||.|+.+.
T Consensus 342 Cgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~as~~TIk~tTkpCPkChvpt 407 (446)
T KOG0006|consen 342 CGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAASKETIKKTTKPCPKCHVPT 407 (446)
T ss_pred chhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhhhhhhhhhccCCCCCccCcc
No 193
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.36 E-value=73 Score=30.88 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=20.5
Q ss_pred ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 51 FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 51 FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
-|..|-+..-+ +...||.|+...-+
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhc-CCCCCccccccccc
Confidence 49999988777 56799999987765
No 194
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=21.15 E-value=83 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=27.3
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|...|+.||..|-++|+.+.++++++.=|+.
T Consensus 14 l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~ 44 (71)
T cd01796 14 LDVDPDLELENFKALCEAESGIPASQQQLIY 44 (71)
T ss_pred EEECCcCCHHHHHHHHHHHhCCCHHHeEEEE
Confidence 5778999999999999999999999976653
No 195
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=21.15 E-value=99 Score=22.54 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.6
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEE
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEI 347 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~ 347 (403)
+.+.|..||..|.+.|+.++++++..+-|
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l 40 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRL 40 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 35678899999999999999999998877
No 196
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=21.06 E-value=1.1e+02 Score=35.18 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=21.9
Q ss_pred cccccccCCCCCCcccCCCCCCCccCccchhh-HHHH
Q 015679 248 PEMLAWGRGGTRSNTRHGSASGCNSKSSRSTR-LNKL 283 (403)
Q Consensus 248 ~~~~~~g~~g~rs~~r~g~~~~~~~~~~r~~~-~~kl 283 (403)
++.++|=++-.+-.|++|-.+|..++.++-.+ |.+|
T Consensus 106 p~~~~~~~~e~~~s~~~~k~~~~~r~~~~l~~~l~~l 142 (895)
T KOG2076|consen 106 PEGLKQFKGEGEKSTGTKKRGRRSRGKSKLAPELRQL 142 (895)
T ss_pred CchhhhhhhhheecccCCccCCCCCcccccCHHHHHH
Confidence 56777766555656677766666555555555 4444
No 197
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=20.85 E-value=52 Score=22.91 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=14.7
Q ss_pred cccccccccc-ccccCCCCCcccH
Q 015679 31 CPICLGIIKK-TRTVMECLHRFCR 53 (403)
Q Consensus 31 CpIClel~~d-Pvtll~CgH~FC~ 53 (403)
|.+|.....- |....-|+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 5566654444 7665558888876
No 198
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=20.66 E-value=35 Score=30.85 Aligned_cols=27 Identities=19% Similarity=0.753 Sum_probs=18.3
Q ss_pred ccccccccccccccccCCCCCcccH-HHHh
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCR-ECID 57 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~-~CI~ 57 (403)
-.|.||. +..+..++.||..||. .|+.
T Consensus 119 ~fCaVCG--~~S~ysC~~CG~kyCsv~C~~ 146 (156)
T KOG3362|consen 119 KFCAVCG--YDSKYSCVNCGTKYCSVRCLK 146 (156)
T ss_pred hhhhhcC--CCchhHHHhcCCceeechhhh
Confidence 4699998 4444456889998875 4543
No 199
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=50 Score=34.85 Aligned_cols=20 Identities=30% Similarity=0.585 Sum_probs=15.4
Q ss_pred cccccCCCCCcccHHHHhhhh
Q 015679 40 KTRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 40 dPvtll~CgH~FC~~CI~~~l 60 (403)
.+|. -.|||.||..|...|-
T Consensus 178 ~~v~-C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 178 VEVD-CGCGHEFCFACGEESH 197 (444)
T ss_pred ccee-CCCCchhHhhcccccc
Confidence 4454 5799999999987664
No 200
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=20.15 E-value=2.1e+02 Score=22.39 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=43.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+.++.++++. +.=.|+.||..|-+-||.+..++++..-|...-+ + ..|.+++|
T Consensus 3 ~~i~Vk~~~G~~~~------~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~----------G-------~~L~D~~t 59 (80)
T cd01792 3 WDLKVKMLGGNEFL------VSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS----------R-------EVLQDGVP 59 (80)
T ss_pred eEEEEEeCCCCEEE------EEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC----------C-------CCCCCCCC
Confidence 45556667776654 1335788999999999999999999888754211 1 25677778
Q ss_pred hhccc
Q 015679 379 LAGLR 383 (403)
Q Consensus 379 ~~~l~ 383 (403)
|++..
T Consensus 60 L~~~g 64 (80)
T cd01792 60 LVSQG 64 (80)
T ss_pred HHHcC
Confidence 87753
Done!