Query 015679
Match_columns 403
No_of_seqs 228 out of 1579
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl2_A E3 ubiquitin-protein li 99.5 8.1E-15 2.8E-19 125.2 4.5 74 23-97 47-120 (124)
2 1jm7_B BARD1, BRCA1-associated 99.5 6.7E-15 2.3E-19 124.7 3.7 89 22-114 16-115 (117)
3 1t1h_A Gspef-atpub14, armadill 99.5 1.2E-14 4.1E-19 114.0 4.8 69 24-94 4-72 (78)
4 3ztg_A E3 ubiquitin-protein li 99.5 2.3E-14 7.8E-19 115.8 5.3 71 23-94 8-80 (92)
5 2ckl_A Polycomb group ring fin 99.5 4E-14 1.4E-18 118.0 5.2 79 19-98 6-87 (108)
6 2ckl_B Ubiquitin ligase protei 99.4 3.3E-14 1.1E-18 127.1 3.4 77 21-97 47-123 (165)
7 2kr4_A Ubiquitin conjugation f 99.4 6.6E-14 2.3E-18 112.7 4.5 69 23-94 9-77 (85)
8 3lrq_A E3 ubiquitin-protein li 99.4 2.7E-14 9.3E-19 117.9 2.3 71 20-91 14-84 (100)
9 1wgm_A Ubiquitin conjugation f 99.4 1.5E-13 5E-18 113.8 6.4 69 23-94 17-86 (98)
10 1z6u_A NP95-like ring finger p 99.4 8.8E-14 3E-18 123.4 4.4 73 23-96 73-145 (150)
11 2egp_A Tripartite motif-contai 99.4 5.3E-14 1.8E-18 110.1 2.2 66 23-90 7-78 (79)
12 2kre_A Ubiquitin conjugation f 99.4 1.3E-13 4.6E-18 114.4 4.7 70 22-94 23-92 (100)
13 4ayc_A E3 ubiquitin-protein li 99.4 1.4E-13 4.9E-18 119.8 4.6 68 23-95 48-115 (138)
14 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.3E-18 113.1 3.9 71 22-94 16-86 (99)
15 3l11_A E3 ubiquitin-protein li 99.4 2.3E-13 7.9E-18 114.5 3.7 73 23-96 10-88 (115)
16 2ecw_A Tripartite motif-contai 99.4 2.7E-13 9.4E-18 106.8 3.4 66 23-90 14-84 (85)
17 2djb_A Polycomb group ring fin 99.3 5E-13 1.7E-17 103.4 4.7 53 23-76 10-62 (72)
18 2ecv_A Tripartite motif-contai 99.3 3.7E-13 1.3E-17 106.1 3.8 66 23-90 14-84 (85)
19 3hct_A TNF receptor-associated 99.3 3.3E-13 1.1E-17 114.4 3.4 79 12-96 6-84 (118)
20 3knv_A TNF receptor-associated 99.3 1.9E-13 6.4E-18 120.1 1.2 68 7-75 9-77 (141)
21 1jm7_A BRCA1, breast cancer ty 99.3 8.4E-13 2.9E-17 109.9 4.9 72 22-95 15-88 (112)
22 2yur_A Retinoblastoma-binding 99.3 9.8E-13 3.4E-17 102.5 4.4 56 23-79 10-67 (74)
23 2ecy_A TNF receptor-associated 99.3 1.6E-12 5.4E-17 98.8 5.3 53 23-76 10-62 (66)
24 2ysl_A Tripartite motif-contai 99.3 2.1E-12 7.2E-17 99.5 5.9 53 23-76 15-69 (73)
25 2c2l_A CHIP, carboxy terminus 99.3 1E-12 3.5E-17 124.9 4.1 70 24-95 204-273 (281)
26 2yu4_A E3 SUMO-protein ligase 99.3 9.6E-13 3.3E-17 107.6 3.2 70 24-95 3-81 (94)
27 2csy_A Zinc finger protein 183 99.3 2.1E-12 7.2E-17 102.0 3.5 58 24-85 11-68 (81)
28 1rmd_A RAG1; V(D)J recombinati 99.3 2E-12 6.7E-17 108.9 3.3 72 23-95 18-89 (116)
29 2ysj_A Tripartite motif-contai 99.2 4.6E-12 1.6E-16 95.2 4.8 47 23-70 15-63 (63)
30 2f42_A STIP1 homology and U-bo 99.2 3.7E-12 1.3E-16 116.4 4.6 70 23-94 101-170 (179)
31 3hcs_A TNF receptor-associated 99.2 3.6E-12 1.2E-16 114.2 3.3 78 12-95 6-83 (170)
32 2ct2_A Tripartite motif protei 99.2 8.7E-12 3E-16 99.2 3.8 54 22-76 9-68 (88)
33 2ecj_A Tripartite motif-contai 99.2 1.9E-11 6.5E-16 89.9 4.8 47 23-70 10-58 (58)
34 1g25_A CDK-activating kinase a 99.2 1.1E-11 3.6E-16 93.9 3.1 50 27-76 2-55 (65)
35 3ng2_A RNF4, snurf, ring finge 99.1 1.5E-11 5.2E-16 94.0 3.5 50 25-76 7-63 (71)
36 1e4u_A Transcriptional repress 99.1 4.4E-11 1.5E-15 94.9 6.0 54 23-77 6-63 (78)
37 3htk_C E3 SUMO-protein ligase 99.1 1.2E-11 4.2E-16 118.7 3.3 70 22-92 175-247 (267)
38 2ea6_A Ring finger protein 4; 99.1 1.5E-11 5.2E-16 93.2 3.1 52 23-76 10-68 (69)
39 2d8t_A Dactylidin, ring finger 99.1 1.7E-11 5.7E-16 94.5 3.2 49 26-76 13-61 (71)
40 2ect_A Ring finger protein 126 99.1 5.9E-11 2E-15 92.7 3.9 52 24-76 11-64 (78)
41 2xeu_A Ring finger protein 4; 99.1 3.5E-11 1.2E-15 89.9 1.8 49 27-76 2-56 (64)
42 1iym_A EL5; ring-H2 finger, ub 99.0 1.1E-10 3.7E-15 85.1 3.6 49 25-75 2-54 (55)
43 1chc_A Equine herpes virus-1 r 99.0 6.7E-11 2.3E-15 89.9 2.3 49 27-76 4-52 (68)
44 2ecn_A Ring finger protein 141 99.0 5.1E-11 1.8E-15 91.2 1.4 51 23-76 10-60 (70)
45 2ep4_A Ring finger protein 24; 99.0 1.4E-10 4.7E-15 89.7 3.8 53 23-76 10-64 (74)
46 1x4j_A Ring finger protein 38; 99.0 1.5E-10 5.3E-15 89.9 3.0 53 23-76 18-72 (75)
47 2kiz_A E3 ubiquitin-protein li 99.0 2.2E-10 7.7E-15 87.3 3.8 51 25-76 11-63 (69)
48 1bor_A Transcription factor PM 99.0 1.8E-10 6.3E-15 85.1 3.1 46 26-76 4-49 (56)
49 2l0b_A E3 ubiquitin-protein li 99.0 2E-10 6.7E-15 93.0 3.0 51 24-76 36-89 (91)
50 2ecm_A Ring finger and CHY zin 99.0 2.3E-10 7.8E-15 83.2 2.9 48 27-75 4-54 (55)
51 1v87_A Deltex protein 2; ring- 98.9 6.7E-10 2.3E-14 92.8 4.9 50 27-76 24-94 (114)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 4.6E-10 1.6E-14 95.1 3.0 49 26-76 5-60 (133)
53 4ic3_A E3 ubiquitin-protein li 98.9 2.5E-10 8.7E-15 89.1 1.2 49 22-76 18-67 (74)
54 2ecg_A Baculoviral IAP repeat- 98.8 1.3E-09 4.6E-14 85.0 3.7 49 22-76 19-68 (75)
55 2ecl_A Ring-box protein 2; RNF 98.8 2.1E-09 7.1E-14 85.3 3.7 49 27-76 14-76 (81)
56 2y1n_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 107.2 3.1 52 25-77 329-380 (389)
57 3dpl_R Ring-box protein 1; ubi 98.6 1.3E-08 4.5E-13 85.2 3.6 48 27-75 36-100 (106)
58 4ap4_A E3 ubiquitin ligase RNF 98.6 8.9E-09 3.1E-13 87.1 1.9 50 25-76 69-125 (133)
59 2yho_A E3 ubiquitin-protein li 98.6 7.5E-09 2.6E-13 82.0 1.0 48 23-76 13-61 (79)
60 2vje_A E3 ubiquitin-protein li 98.6 1.4E-08 4.8E-13 77.1 2.4 48 27-76 7-57 (64)
61 2vje_B MDM4 protein; proto-onc 98.5 2.6E-08 9E-13 75.3 2.5 47 28-76 7-56 (63)
62 2bay_A PRE-mRNA splicing facto 98.5 1.5E-08 5E-13 76.7 0.8 47 28-76 3-50 (61)
63 3t6p_A Baculoviral IAP repeat- 98.5 2.7E-08 9.2E-13 99.4 1.8 50 21-76 288-338 (345)
64 1wim_A KIAA0161 protein; ring 98.4 5.5E-08 1.9E-12 78.8 2.2 47 27-73 4-61 (94)
65 4a0k_B E3 ubiquitin-protein li 98.4 3.3E-08 1.1E-12 84.3 0.2 47 28-75 48-111 (117)
66 2ea5_A Cell growth regulator w 98.4 1.9E-07 6.4E-12 71.8 3.8 44 27-76 14-58 (68)
67 2d8s_A Cellular modulator of i 98.2 5.2E-07 1.8E-11 71.7 3.5 51 27-78 14-72 (80)
68 2ct0_A Non-SMC element 1 homol 98.1 3E-06 1E-10 66.5 4.3 48 29-76 16-64 (74)
69 3vk6_A E3 ubiquitin-protein li 97.9 4.5E-06 1.5E-10 68.8 3.3 47 30-76 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.0002 6.7E-09 53.7 4.2 48 27-75 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.3 4.3E-05 1.5E-09 76.0 0.4 50 27-76 307-373 (381)
72 3nw0_A Non-structural maintena 96.2 0.0028 9.5E-08 59.9 4.0 49 28-76 180-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0036 1.2E-07 50.6 2.0 35 27-61 2-38 (101)
74 3m62_A Ubiquitin conjugation f 95.3 0.012 4.2E-07 65.3 4.9 69 23-94 886-955 (968)
75 3rui_B Autophagy-related prote 93.8 0.1 3.4E-06 44.2 6.0 84 299-400 31-114 (118)
76 3h9d_A ATG8, microtubule-assoc 93.7 0.075 2.6E-06 45.0 4.9 83 299-400 32-115 (119)
77 3m95_A Autophagy related prote 92.4 0.2 6.7E-06 42.9 5.6 84 299-401 37-121 (125)
78 2r2q_A Gamma-aminobutyric acid 91.2 0.32 1.1E-05 40.4 5.6 82 299-398 28-109 (110)
79 1wz3_A Autophagy 12B, ATG12B, 90.9 0.35 1.2E-05 39.4 5.5 78 299-399 14-91 (96)
80 1eo6_A GATE-16, golgi-associat 90.0 0.41 1.4E-05 40.3 5.3 84 299-400 29-112 (117)
81 2zjd_A Microtubule-associated 89.1 0.44 1.5E-05 40.9 4.9 84 299-400 36-121 (130)
82 2ko5_A Ring finger protein Z; 89.1 0.57 1.9E-05 38.1 5.2 54 20-76 20-73 (99)
83 3gs2_A E3 ubiquitin-protein li 89.1 0.24 8.2E-06 41.0 3.1 80 315-400 22-110 (111)
84 3i2d_A E3 SUMO-protein ligase 88.8 0.16 5.6E-06 50.8 2.2 66 24-90 245-313 (371)
85 4fo9_A E3 SUMO-protein ligase 88.4 0.18 6.1E-06 50.3 2.2 67 24-92 211-281 (360)
86 4gdk_A Ubiquitin-like protein 87.4 0.95 3.2E-05 36.4 5.5 80 299-399 6-86 (91)
87 1weo_A Cellulose synthase, cat 85.1 1 3.6E-05 36.2 4.5 48 28-75 16-69 (93)
88 2cs3_A Protein C14ORF4, MY039 82.0 0.75 2.6E-05 36.4 2.5 43 27-70 14-64 (93)
89 3w1s_C Ubiquitin-like protein 74.2 4.2 0.00014 32.6 4.8 78 299-399 9-86 (91)
90 2ct7_A Ring finger protein 31; 68.2 1.5 5.3E-05 34.4 1.0 30 30-59 27-61 (86)
91 1z60_A TFIIH basal transcripti 57.9 6.8 0.00023 28.9 2.8 41 29-70 16-58 (59)
92 2jmo_A Parkin; IBR, E3 ligase, 56.7 2.5 8.4E-05 32.8 0.2 34 28-61 25-70 (80)
93 2gmg_A Hypothetical protein PF 54.4 5.1 0.00017 33.1 1.7 32 37-74 63-94 (105)
94 1wil_A KIAA1045 protein; ring 53.5 13 0.00046 29.5 3.9 48 25-72 12-75 (89)
95 2lri_C Autoimmune regulator; Z 52.0 13 0.00043 27.8 3.5 46 27-73 11-59 (66)
96 3n3k_B Ubiquitin; hydrolase, p 51.0 12 0.0004 28.0 3.3 44 300-349 5-48 (85)
97 3plu_A Ubiquitin-like modifier 50.3 16 0.00056 29.3 4.1 76 292-397 17-92 (93)
98 4g9i_A Hydrogenase maturation 50.3 6.6 0.00022 42.9 2.3 49 27-75 105-189 (772)
99 1wd2_A Ariadne-1 protein homol 49.7 2.7 9.3E-05 31.0 -0.6 34 29-62 7-47 (60)
100 3mtn_B UBA80, ubcep1, ubiquiti 49.6 15 0.0005 27.4 3.6 73 299-399 4-76 (85)
101 3ttc_A HYPF, transcriptional r 48.1 7.2 0.00025 41.8 2.2 48 27-74 16-99 (657)
102 3a9j_A Ubiquitin; protein comp 47.5 22 0.00074 25.7 4.2 43 301-349 3-45 (76)
103 1z2q_A LM5-1; membrane protein 47.3 12 0.00042 29.0 2.9 33 27-59 20-55 (84)
104 3mjh_B Early endosome antigen 45.9 4.5 0.00016 26.7 0.1 16 28-43 5-20 (34)
105 3vth_A Hydrogenase maturation 45.6 8.3 0.00028 42.0 2.2 49 27-75 110-194 (761)
106 2jne_A Hypothetical protein YF 42.8 2.7 9.2E-05 34.3 -1.7 40 29-75 33-72 (101)
107 2l5u_A Chromodomain-helicase-D 42.7 19 0.00066 26.1 3.2 46 26-72 9-57 (61)
108 2zet_C Melanophilin; complex, 41.9 2.6 8.7E-05 37.0 -2.1 46 27-72 67-116 (153)
109 1ndd_A NEDD8, protein (ubiquit 41.5 29 0.00099 24.9 4.1 43 301-349 3-45 (76)
110 2lbm_A Transcriptional regulat 39.7 22 0.00075 30.7 3.5 44 28-72 63-116 (142)
111 2bwf_A Ubiquitin-like protein 39.4 27 0.00093 25.3 3.7 44 299-349 5-48 (77)
112 1wh3_A 59 kDa 2'-5'-oligoadeny 38.7 36 0.0012 25.5 4.3 61 299-384 8-68 (87)
113 2dzi_A Ubiquitin-like protein 38.5 39 0.0013 24.7 4.5 44 300-349 9-52 (81)
114 3k9o_B Ubiquitin, UBB+1; E2-25 38.0 30 0.001 26.6 3.8 44 300-349 3-46 (96)
115 2k16_A Transcription initiatio 35.9 17 0.00058 27.3 2.0 49 27-75 17-70 (75)
116 1mm2_A MI2-beta; PHD, zinc fin 35.3 18 0.00061 26.4 2.0 46 27-73 8-56 (61)
117 1vfy_A Phosphatidylinositol-3- 35.0 17 0.0006 27.3 1.9 31 29-59 12-45 (73)
118 1joc_A EEA1, early endosomal a 35.0 13 0.00045 31.1 1.3 32 29-60 70-104 (125)
119 1dvp_A HRS, hepatocyte growth 35.0 12 0.00042 34.0 1.2 36 24-59 157-195 (220)
120 1sif_A Ubiquitin; hydrophobic 34.1 34 0.0012 26.1 3.6 44 300-349 11-54 (88)
121 1js8_A Hemocyanin; glycoprotei 33.5 19 0.00065 35.9 2.5 43 280-324 346-390 (394)
122 3phx_B Ubiquitin-like protein 33.0 43 0.0015 24.6 3.9 64 294-384 2-65 (79)
123 3dbh_I NEDD8; cell cycle, acti 33.0 32 0.0011 25.7 3.2 73 299-399 13-85 (88)
124 1yx5_B Ubiquitin; proteasome, 32.1 56 0.0019 25.3 4.6 43 301-349 3-45 (98)
125 1zbd_B Rabphilin-3A; G protein 31.9 13 0.00046 31.7 0.9 46 27-72 54-106 (134)
126 3vdz_A Ubiquitin-40S ribosomal 31.9 43 0.0015 26.9 3.9 45 299-349 36-80 (111)
127 2xqn_T Testin, TESS; metal-bin 31.8 22 0.00075 28.9 2.2 54 20-76 21-75 (126)
128 2cup_A Skeletal muscle LIM-pro 31.5 19 0.00067 27.9 1.7 51 23-76 27-78 (101)
129 3zyq_A Hepatocyte growth facto 31.4 22 0.00076 32.6 2.4 37 24-60 160-199 (226)
130 1m3v_A FLIN4, fusion of the LI 31.4 25 0.00086 28.7 2.5 53 22-76 25-81 (122)
131 2o35_A Hypothetical protein DU 31.1 16 0.00056 29.8 1.2 13 50-62 42-54 (105)
132 4eew_A Large proline-rich prot 31.1 53 0.0018 24.6 4.2 48 294-349 15-62 (88)
133 3fyb_A Protein of unknown func 30.8 17 0.00057 29.7 1.2 12 50-61 41-52 (104)
134 3v6c_B Ubiquitin; structural g 30.7 49 0.0017 25.2 4.0 61 299-384 18-78 (91)
135 4hcn_B Polyubiquitin, ubiquiti 30.7 41 0.0014 26.2 3.5 66 292-384 18-83 (98)
136 4dwf_A HLA-B-associated transc 30.6 47 0.0016 25.1 3.8 47 295-349 4-50 (90)
137 3mpx_A FYVE, rhogef and PH dom 30.1 11 0.00037 37.3 0.0 46 28-73 375-429 (434)
138 3o36_A Transcription intermedi 30.0 18 0.00061 31.9 1.4 46 28-74 4-52 (184)
139 4fbj_B NEDD8; effector-HOST ta 30.0 44 0.0015 25.5 3.5 43 301-349 3-45 (88)
140 2hj8_A Interferon-induced 17 k 30.0 60 0.002 24.6 4.3 76 293-398 1-76 (88)
141 3v43_A Histone acetyltransfera 29.6 43 0.0015 27.1 3.6 46 26-71 3-62 (112)
142 2yt5_A Metal-response element- 29.5 8.4 0.00029 28.2 -0.7 49 27-75 5-63 (66)
143 1we9_A PHD finger family prote 27.8 9.7 0.00033 27.8 -0.6 48 26-73 4-58 (64)
144 2uyz_B Small ubiquitin-related 27.8 43 0.0015 24.6 3.1 61 299-384 4-64 (79)
145 3t7l_A Zinc finger FYVE domain 27.4 24 0.00081 27.8 1.6 33 28-60 20-55 (90)
146 1wx8_A Riken cDNA 4931431F19; 27.4 35 0.0012 26.3 2.6 47 294-349 15-61 (96)
147 1uh6_A Ubiquitin-like 5; beta- 26.9 53 0.0018 26.5 3.6 71 299-397 29-99 (100)
148 2wyq_A HHR23A, UV excision rep 26.9 88 0.003 23.0 4.8 72 299-398 6-80 (85)
149 2pjh_A Protein NPL4, nuclear p 26.4 37 0.0013 25.9 2.5 59 320-396 19-77 (80)
150 2yw8_A RUN and FYVE domain-con 26.3 24 0.00083 27.1 1.4 33 28-60 19-54 (82)
151 2ysm_A Myeloid/lymphoid or mix 26.3 26 0.00088 28.3 1.6 45 27-71 6-55 (111)
152 1f62_A Transcription factor WS 26.2 46 0.0016 22.9 2.7 43 30-72 2-49 (51)
153 2ojr_A Ubiquitin; lanthide-bin 26.2 69 0.0024 25.5 4.2 72 299-398 36-107 (111)
154 1y02_A CARP2, FYVE-ring finger 26.1 23 0.00078 29.7 1.3 45 28-73 19-66 (120)
155 1wyw_B Ubiquitin-like protein 25.7 60 0.002 25.3 3.7 62 299-385 22-83 (97)
156 3u5n_A E3 ubiquitin-protein li 25.7 22 0.00076 32.0 1.2 46 28-74 7-55 (207)
157 3ql9_A Transcriptional regulat 25.5 54 0.0018 27.8 3.5 43 29-72 58-110 (129)
158 1j8c_A Ubiquitin-like protein 25.1 1.5E+02 0.0051 24.3 6.2 62 295-384 31-92 (125)
159 2d8v_A Zinc finger FYVE domain 24.5 20 0.00069 27.1 0.6 31 28-60 8-39 (67)
160 1wfk_A Zinc finger, FYVE domai 24.2 24 0.00083 27.7 1.1 33 28-60 9-44 (88)
161 1fp0_A KAP-1 corepressor; PHD 24.1 36 0.0012 27.0 2.0 47 26-73 23-72 (88)
162 3b08_A Polyubiquitin-C, ubiqui 23.1 89 0.003 25.6 4.5 75 299-401 77-151 (152)
163 1wy8_A NP95-like ring finger p 22.7 1.1E+02 0.0039 22.7 4.7 72 299-398 8-81 (89)
164 2l43_A N-teminal domain from h 22.1 34 0.0012 26.8 1.6 51 25-75 22-77 (88)
165 1wf9_A NPL4 family protein; be 21.6 54 0.0018 26.2 2.7 82 299-398 8-94 (107)
166 2faz_A Ubiquitin-like containi 21.5 1.2E+02 0.004 22.0 4.4 44 301-349 5-49 (78)
167 1x4u_A Zinc finger, FYVE domai 21.2 31 0.0011 26.6 1.2 32 28-59 14-48 (84)
168 3lqh_A Histone-lysine N-methyl 20.9 26 0.00089 31.4 0.7 46 29-74 3-64 (183)
169 1ttn_A DC-UBP, dendritic cell- 20.8 90 0.0031 24.6 3.9 72 299-398 24-95 (106)
170 2pv0_B DNA (cytosine-5)-methyl 20.6 86 0.0029 31.3 4.4 28 46-73 112-148 (386)
171 2rgt_A Fusion of LIM/homeobox 20.2 68 0.0023 27.5 3.2 50 23-76 27-77 (169)
172 1we7_A SF3A1 protein; structur 20.1 92 0.0032 24.9 3.9 47 319-384 50-96 (115)
173 1x61_A Thyroid receptor intera 20.1 69 0.0024 23.0 2.8 33 29-61 34-66 (72)
No 1
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=8.1e-15 Score=125.16 Aligned_cols=74 Identities=24% Similarity=0.652 Sum_probs=66.1
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhhhh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 97 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~~c 97 (403)
..+.+++.||||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..+++..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 566788999999999999997 89999999999999998666699999999987678899999999999888753
No 2
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=6.7e-15 Score=124.69 Aligned_cols=89 Identities=21% Similarity=0.533 Sum_probs=60.2
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhh------
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP------ 95 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~------ 95 (403)
+..+.+++.||||+++|.+|+++.+|||+||..||..|+. ..||.|+..+.. ..+.+|..+.+++..+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~-~~~~~n~~l~~l~~~~~~~~~~~~ 91 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI-QDLKINRQLDSMIQLCSKLRNLLH 91 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC-SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc-ccccccHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999998339999999999999997 689999999865 678899999988764432
Q ss_pred -----hhhhhHHHHHhccHHHHHH
Q 015679 96 -----DIDKYEEEELAFHEEERTR 114 (403)
Q Consensus 96 -----~c~~~eeel~~fceede~~ 114 (403)
.+..|.+...+||+++++.
T Consensus 92 ~~~~~~c~~h~~~~~lfc~~~~k~ 115 (117)
T 1jm7_B 92 DNELSDLKEDKPRKSLFNDAGNKK 115 (117)
T ss_dssp CCCCCC------------------
T ss_pred hccccccccccccCccceeccccc
Confidence 3667778888999988753
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=1.2e-14 Score=113.97 Aligned_cols=69 Identities=22% Similarity=0.394 Sum_probs=60.7
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
.+.+++.||||+++|.+|++ ++|||+||..||.+|+..+...||.|+..+.. ..+.+|..+.++|..+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-hhCccCHHHHHHHHHHH
Confidence 46678999999999999997 89999999999999998657899999999876 57888999988886554
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=115.81 Aligned_cols=71 Identities=21% Similarity=0.534 Sum_probs=60.3
Q ss_pred ccccccccccccccccccccccCC-CCCcccHHHHhhhhhc-CCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRL-GNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~-CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
..+.+++.||||+++|.+|++ ++ |||+||..||..|+.. +...||.||..+.....+.+|..+.++++.+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 456778999999999999997 78 9999999999999974 34689999999855577888998888886554
No 5
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.45 E-value=4e-14 Score=118.02 Aligned_cols=79 Identities=27% Similarity=0.702 Sum_probs=66.1
Q ss_pred ccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCC---CCCCChhhhHHHHhHhh
Q 015679 19 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR---SLRDDPNYDALISALYP 95 (403)
Q Consensus 19 ~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~---~l~~n~~L~~lI~~l~~ 95 (403)
.+.+..+.+++.|+||+++|.+|+++++|||+||..||..|+. ....||.|+..+.... .+..|..+.+++..+.+
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3455778899999999999999998559999999999999998 4589999999987632 56788888898888777
Q ss_pred hhh
Q 015679 96 DID 98 (403)
Q Consensus 96 ~c~ 98 (403)
...
T Consensus 85 ~~~ 87 (108)
T 2ckl_A 85 GLF 87 (108)
T ss_dssp THH
T ss_pred hHH
Confidence 543
No 6
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.43 E-value=3.3e-14 Score=127.12 Aligned_cols=77 Identities=52% Similarity=1.068 Sum_probs=64.0
Q ss_pred ccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhhhh
Q 015679 21 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 97 (403)
Q Consensus 21 ~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~~c 97 (403)
....+.+++.||||+++|.+|+++++|||.||..||..|+..+...||.||..+.....+.+|..+.++|..+++..
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred chhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 34567788999999999999998569999999999999999667899999999976677889999999998887753
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.43 E-value=6.6e-14 Score=112.69 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=60.7
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
..+.+++.||||+++|.+||+ ++|||+||+.||..||. ....||.|+..+.. ..+.+|..+.++|..+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE-SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeE-CCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence 456788999999999999997 89999999999999998 46799999999986 67888998888886553
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=117.91 Aligned_cols=71 Identities=21% Similarity=0.464 Sum_probs=60.0
Q ss_pred cccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 20 v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
.....+.+++.|+||+++|.+|+++++|||.||..||..|+......||.||..+.. ..+..+..+..++.
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL-RELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECTTHHHHHH
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH-HHhHhhHHHHHHHH
Confidence 344678889999999999999997689999999999999999655799999999876 66777777766654
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=1.5e-13 Score=113.77 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=60.8
Q ss_pred ccccccccccccccccccccccCCCC-CcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
..+.++|.||||+++|.+||+ ++|| |+||+.||.+||.. ...||.|+.++.. ..+.+|..|.++|..+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence 566789999999999999997 8999 99999999999984 6799999999986 67888998888886553
No 10
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=8.8e-14 Score=123.39 Aligned_cols=73 Identities=22% Similarity=0.640 Sum_probs=64.7
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhhh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPD 96 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~~ 96 (403)
..+.+++.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..+++.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 456678999999999999997 8999999999999999966568999999998754789999999999888764
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=5.3e-14 Score=110.09 Aligned_cols=66 Identities=26% Similarity=0.750 Sum_probs=55.8
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcC------CCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG------NNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
..+.+++.|+||++.|.+|++ ++|||+||..||..|+... ...||.||..+.. ..+..|..+.+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHhh
Confidence 567788999999999999997 8999999999999999852 5689999999886 5677777666543
No 12
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.40 E-value=1.3e-13 Score=114.39 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=61.9
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
...+.+++.||||+++|.+||+ ++|||+||+.||..||. ....||.|+.++.. ..+.+|..+.++|..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 3566789999999999999997 88999999999999998 56899999999986 67889999988886654
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=1.4e-13 Score=119.81 Aligned_cols=68 Identities=29% Similarity=0.608 Sum_probs=53.9
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 95 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~ 95 (403)
..+.+++.|+||++.|.+|++ ++|||+||..||..|+. ....||.||..+.. ...+..++.++..+..
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHHT
T ss_pred HhccccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHHH
Confidence 345677899999999999997 89999999999999998 56789999998865 2335555555554443
No 14
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=113.15 Aligned_cols=71 Identities=24% Similarity=0.613 Sum_probs=60.6
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
+..+.+++.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+.. ..+..|..+.+++..+.
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence 4567788999999999999997459999999999999998 55799999999876 66888888888876543
No 15
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=2.3e-13 Score=114.49 Aligned_cols=73 Identities=27% Similarity=0.601 Sum_probs=58.7
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC------CCCCCCChhhhHHHHhHhhh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS------RRSLRDDPNYDALISALYPD 96 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~------~~~l~~n~~L~~lI~~l~~~ 96 (403)
..+.+++.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ...+..|..+..++..+++.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred cCCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 345667999999999999997 79999999999999998667899999998763 24455667777776665543
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.7e-13 Score=106.81 Aligned_cols=66 Identities=30% Similarity=0.787 Sum_probs=55.6
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcC-----CCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~-----~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
..+.+++.|+||++.+.+|+. ++|||.||..||..|+... ...||.||..+.. ..+.+|..+.+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHhh
Confidence 567788999999999999996 8999999999999999852 5689999999876 5677777666543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5e-13 Score=103.42 Aligned_cols=53 Identities=34% Similarity=0.855 Sum_probs=47.6
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+++.|+||++.+.+|+++++|||.||..||..|+.. ...||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 5667889999999999999985699999999999999984 6789999998876
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=106.06 Aligned_cols=66 Identities=26% Similarity=0.842 Sum_probs=56.2
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhc-----CCCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
..+.+.+.|+||++.+.+|+. ++|||.||..||..|+.. +...||.||..+.. ..+.+|..+.+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHhh
Confidence 567788999999999999997 899999999999999974 36789999999886 6677777776543
No 19
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.34 E-value=3.3e-13 Score=114.37 Aligned_cols=79 Identities=30% Similarity=0.581 Sum_probs=63.9
Q ss_pred cccccccccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 12 GFFCRFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 12 g~~~e~v~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
|++.+|+ ..+.+++.|+||++++.+|++ ++|||+||..||..|+......||.||..+.. ..+..+..+..++.
T Consensus 6 g~~~~~~----~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 6 GYDVEFD----PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREIL 79 (118)
T ss_dssp CBCSCBS----SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHH
T ss_pred CCChhhc----cCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHc
Confidence 4444454 688889999999999999997 89999999999999998655699999999876 55667777777776
Q ss_pred hHhhh
Q 015679 92 ALYPD 96 (403)
Q Consensus 92 ~l~~~ 96 (403)
.+...
T Consensus 80 ~l~v~ 84 (118)
T 3hct_A 80 SLMVK 84 (118)
T ss_dssp TSEEE
T ss_pred cceeE
Confidence 65543
No 20
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.33 E-value=1.9e-13 Score=120.14 Aligned_cols=68 Identities=19% Similarity=0.476 Sum_probs=51.2
Q ss_pred CCccccccccccc-cccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 7 PLKFSGFFCRFVF-VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 7 ~~~s~g~~~e~v~-v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
|++.+....+|.. .....+.+++.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.
T Consensus 9 p~s~~~~~~g~~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 9 PGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp ------CCCSBCGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CccccccCCCcchhhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3343333444442 223688899999999999999997 8999999999999999866668999999753
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=8.4e-13 Score=109.87 Aligned_cols=72 Identities=31% Similarity=0.768 Sum_probs=59.8
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhcCC--CCCCCCcccccCCCCCCCChhhhHHHHhHhh
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN--NECPACRTHCASRRSLRDDPNYDALISALYP 95 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~ 95 (403)
...+.+.+.|+||++.+.+|+. ++|||.||..||..|+.... ..||.||..+.. ..+..+..+.+++..+..
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHH
T ss_pred HHhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHH
Confidence 3456778899999999999997 89999999999999998432 489999999886 677778888777765544
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=102.52 Aligned_cols=56 Identities=25% Similarity=0.669 Sum_probs=47.2
Q ss_pred ccccccccccccccccccccccCC-CCCcccHHHHhhhhhcC-CCCCCCCcccccCCCC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRLG-NNECPACRTHCASRRS 79 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~-CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~~ 79 (403)
..+.+++.|+||+++|.+|++ ++ |||+||..||..|+... ...||.||..+...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred ccCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 566778999999999999997 78 99999999999999843 3689999997654333
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=98.83 Aligned_cols=53 Identities=23% Similarity=0.650 Sum_probs=47.4
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+++.|+||++.+.+|+. ++|||.||..||..|+......||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456778999999999999997 89999999999999996566789999998865
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=99.54 Aligned_cols=53 Identities=38% Similarity=0.900 Sum_probs=47.0
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 76 (403)
..+.+++.|+||++.+.+|+. ++|||.||..||..|+.. ....||.||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 567788999999999999997 799999999999999973 45689999998865
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=1e-12 Score=124.90 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=60.6
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhh
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 95 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~ 95 (403)
.+.+.+.||||+++|.+||+ ++|||+||..||.+||..+...||.|+.++.. ..+.+|..+.++|..+..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHHT
T ss_pred CCCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-hcCcccHHHHHHHHHHHH
Confidence 44568999999999999997 89999999999999998655569999999976 678899999998876543
No 26
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.6e-13 Score=107.64 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=57.3
Q ss_pred cccccccccccccccccccccCC-CCCcccHHHHhhhhhcC-----CCCCCC--Cccc-ccCCCCCCCChhhhHHHHhHh
Q 015679 24 EIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRLG-----NNECPA--CRTH-CASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~-CgH~FC~~CI~~~l~~~-----~~~CP~--CR~~-~~~~~~l~~n~~L~~lI~~l~ 94 (403)
...+++.||||+++|.+||+ ++ |||+||..||..||... ...||. |+.. +.. ..+.+|..|..+|..+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHH
Confidence 34567999999999999997 64 99999999999999843 358999 9876 554 67888988888886654
Q ss_pred h
Q 015679 95 P 95 (403)
Q Consensus 95 ~ 95 (403)
.
T Consensus 81 ~ 81 (94)
T 2yu4_A 81 K 81 (94)
T ss_dssp T
T ss_pred H
Confidence 3
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=102.01 Aligned_cols=58 Identities=21% Similarity=0.489 Sum_probs=48.0
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChh
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN 85 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~ 85 (403)
.....+.|+||++.|.+|+. ++|||.||..||..|+. ....||.||..+. ..+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~ 68 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-ATPRCYICDQPTG--GIFNPAKE 68 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC--SCCEECHH
T ss_pred cCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc--ccCCcHHH
Confidence 34457889999999999996 89999999999999998 4678999999886 34544533
No 28
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2e-12 Score=108.94 Aligned_cols=72 Identities=25% Similarity=0.596 Sum_probs=57.7
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHhh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 95 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~~ 95 (403)
..+.+++.||||++++.+|+. ++|||+||..||..|+......||.||..+........+..+..++..+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred HhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 456678999999999999997 899999999999999986567899999998864434455556666654443
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=95.23 Aligned_cols=47 Identities=40% Similarity=0.983 Sum_probs=42.2
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 70 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~C 70 (403)
..+.+++.|+||++.+.+|+. ++|||.||..||.+|+.. ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 567889999999999999997 799999999999999974 45689998
No 30
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=3.7e-12 Score=116.36 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
..+.+++.||||+++|.+||+ ++|||+||..||..||......||.|+.++.. ..+.+|..+.++|..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence 456788999999999999997 89999999999999998543479999999986 67889999998886553
No 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=3.6e-12 Score=114.21 Aligned_cols=78 Identities=31% Similarity=0.586 Sum_probs=63.6
Q ss_pred cccccccccccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHH
Q 015679 12 GFFCRFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 91 (403)
Q Consensus 12 g~~~e~v~v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 91 (403)
|+..+|+ ..+.+++.||||+++|.+|++ ++|||+||..||.+|+..+...||.||..+.. ..+.++..+..++.
T Consensus 6 g~~~~~~----~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~ 79 (170)
T 3hcs_A 6 GYDVEFD----PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREIL 79 (170)
T ss_dssp CBCSEES----SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHH
T ss_pred CCChhhc----cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHh
Confidence 4555555 688899999999999999997 89999999999999998655699999999876 45566666766666
Q ss_pred hHhh
Q 015679 92 ALYP 95 (403)
Q Consensus 92 ~l~~ 95 (403)
.+..
T Consensus 80 ~l~v 83 (170)
T 3hcs_A 80 SLMV 83 (170)
T ss_dssp TSEE
T ss_pred hccc
Confidence 5554
No 32
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=8.7e-12 Score=99.19 Aligned_cols=54 Identities=28% Similarity=0.781 Sum_probs=46.9
Q ss_pred ccccccccccccccccccc----ccccCCCCCcccHHHHhhhhhcC--CCCCCCCcccccC
Q 015679 22 LPEIRKDVQCPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCAS 76 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~d----Pvtll~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~ 76 (403)
...+.+.+.|+||++.|.+ |+. ++|||.||..||..|+... ...||.||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3567778999999999998 986 8999999999999999853 4689999998765
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=89.87 Aligned_cols=47 Identities=30% Similarity=0.844 Sum_probs=41.4
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhc--CCCCCCCC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 70 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~--~~~~CP~C 70 (403)
..+.+.+.|+||++.+.+|+. ++|||.||..||..|+.. ....||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456778999999999999997 899999999999999764 56789998
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.1e-11 Score=93.93 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=43.2
Q ss_pred cccccccccc-ccccccc---cCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLG-IIKKTRT---VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpICle-l~~dPvt---ll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+++.||||++ ++.+|+. +++|||.||..||.+|+..+...||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 9999952 479999999999999987666789999998875
No 35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.5e-11 Score=94.02 Aligned_cols=50 Identities=34% Similarity=0.832 Sum_probs=43.8
Q ss_pred ccccccccccccccccc-------cccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 25 IRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 25 l~eel~CpIClel~~dP-------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+++.|+||++.+.+| + +++|||.||..||.+|+. ....||.||..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLK-NANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEE-ECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeE-eCCCCChHhHHHHHHHHH-cCCCCCCCCCccCh
Confidence 34578899999999998 5 489999999999999998 45799999999876
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.14 E-value=4.4e-11 Score=94.91 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=44.7
Q ss_pred ccccccccccccccccc--cccccCC--CCCcccHHHHhhhhhcCCCCCCCCcccccCC
Q 015679 23 PEIRKDVQCPICLGIIK--KTRTVME--CLHRFCRECIDKSMRLGNNECPACRTHCASR 77 (403)
Q Consensus 23 ~~l~eel~CpIClel~~--dPvtll~--CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~ 77 (403)
..+++++.||||++.+. +++ +++ |||.||..|+..+|......||.||+.+...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 45678899999999885 344 355 9999999999999976678999999998763
No 37
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.2e-11 Score=118.67 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=60.1
Q ss_pred cccccccccccccccccccccccCCCCCcccHHHHhhhhhc-CCCCCCC--CcccccCCCCCCCChhhhHHHHh
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA--CRTHCASRRSLRDDPNYDALISA 92 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~-~~~~CP~--CR~~~~~~~~l~~n~~L~~lI~~ 92 (403)
+.....++.||||+++|.+||+.+.|||+||+.||..||.. +...||+ |+..+.. ..+.+|..|.+++..
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM-RDFVRDPIMELRCKI 247 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG-GGEEECHHHHHHHHH
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch-hhCCcCHHHHHHHHH
Confidence 45678899999999999999985699999999999999985 3458999 9998876 778899988888753
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=93.25 Aligned_cols=52 Identities=33% Similarity=0.782 Sum_probs=44.4
Q ss_pred ccccccccccccccccccc-------cccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dP-------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+.+.|+||++.+.+| +. ++|||.||..||..|+.. ...||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEE-CSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEe-CCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3456678899999999988 54 899999999999999984 6799999998753
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=94.52 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=43.3
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+++.|+||++.+.+|+. ++|||.||..||..|+. ....||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 346789999999999997 89999999999999998 45799999998754
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=5.9e-11 Score=92.72 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=43.6
Q ss_pred ccccccccccccccccccc--ccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 24 EIRKDVQCPICLGIIKKTR--TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPv--tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+...+.|+||++.|.++. .+++|+|.||..||.+|+. ....||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 3455788999999998663 2379999999999999998 45799999999876
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=3.5e-11 Score=89.88 Aligned_cols=49 Identities=35% Similarity=0.829 Sum_probs=42.3
Q ss_pred cccccccccccccccc------ccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPv------tll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+++.|+||++.+.+|. .+++|||.||..||.+|+.. ...||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 4578999999999872 34899999999999999984 6799999998875
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=1.1e-10 Score=85.05 Aligned_cols=49 Identities=31% Similarity=0.804 Sum_probs=41.5
Q ss_pred cccccccccccccccc---ccccCC-CCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 25 IRKDVQCPICLGIIKK---TRTVME-CLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 25 l~eel~CpIClel~~d---Pvtll~-CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
+.++..|+||++.|.+ ++. ++ |||.||..||.+|+. ....||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 4567889999999987 665 55 999999999999998 5679999998753
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=6.7e-11 Score=89.89 Aligned_cols=49 Identities=37% Similarity=0.832 Sum_probs=42.6
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
....|+||++.+.+|+.+++|||.||..||..|+. ....||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 45789999999999855699999999999999998 45799999998754
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.1e-11 Score=91.17 Aligned_cols=51 Identities=29% Similarity=0.770 Sum_probs=45.2
Q ss_pred ccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+.+.|+||++.+.+ +. ++|||.||..||..|+. ....||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 566778999999999999 64 89999999999999998 67899999998875
No 45
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=89.69 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=44.0
Q ss_pred ccccccccccccccccccccc--cCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRT--VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvt--ll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.++..|+||++.|.++.. +++|+|.||..||..|+.. ...||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 355667899999999987754 2499999999999999984 4689999998865
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=89.88 Aligned_cols=53 Identities=26% Similarity=0.701 Sum_probs=43.9
Q ss_pred ccccccccccccccccccc--cccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dP--vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
....++..|+||++.|..+ +..++|+|.||..||..|+. ....||.||..+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGP 72 (75)
T ss_dssp SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCC
T ss_pred cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCC
Confidence 3455678899999999877 23489999999999999998 45789999998764
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=2.2e-10 Score=87.33 Aligned_cols=51 Identities=29% Similarity=0.777 Sum_probs=41.3
Q ss_pred ccccccccccccccc--cccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 25 IRKDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 25 l~eel~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...+..|+||++.|. .++.+++|||.||..||..|+.. ...||.||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 345678999999885 23334899999999999999984 5689999998764
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=85.11 Aligned_cols=46 Identities=26% Similarity=0.711 Sum_probs=40.1
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+++.|+||++.|.+|+. ++|||+||..||..| ...||.||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 457889999999999997 899999999999873 4589999998764
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=2e-10 Score=93.04 Aligned_cols=51 Identities=25% Similarity=0.712 Sum_probs=43.2
Q ss_pred ccccccccccccccccc---ccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 24 EIRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 24 ~l~eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...++..|+||++.|.. ++. ++|||.||..||..|+. ....||.||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 34567889999998876 665 88999999999999998 56799999998753
No 50
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.96 E-value=2.3e-10 Score=83.22 Aligned_cols=48 Identities=31% Similarity=0.742 Sum_probs=40.0
Q ss_pred cccccccccccccc---ccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.+..|+||++.+.+ ++.+++|||.||..||.+|+... ..||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 35779999999865 33358999999999999999854 88999998764
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.93 E-value=6.7e-10 Score=92.81 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=41.4
Q ss_pred cccccccccccccccc-----------------ccCCCCCcccHHHHhhhhhc----CCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTR-----------------TVMECLHRFCRECIDKSMRL----GNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPv-----------------tll~CgH~FC~~CI~~~l~~----~~~~CP~CR~~~~~ 76 (403)
.+..|+||++.|..|. .+++|+|.||..||..|+.. ....||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997764 14899999999999999952 45689999998865
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=4.6e-10 Score=95.14 Aligned_cols=49 Identities=35% Similarity=0.883 Sum_probs=43.6
Q ss_pred cccccccccccccccc-------cccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 26 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 26 ~eel~CpIClel~~dP-------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+++.|+||++.|.+| +. ++|||.||..||.+|+. ....||.|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 4578899999999999 65 89999999999999998 55799999998875
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.5e-10 Score=89.07 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=43.6
Q ss_pred cccccccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...+.+++.|+||++.+.+|+. ++|||. ||..|+..| ..||.||..+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4567788999999999999997 899999 999999988 579999998864
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=84.99 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=42.4
Q ss_pred cccccccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 22 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 22 ~~~l~eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+..+.+++.|+||++.+.+|+. ++|||. ||..|+... ..||.||..+..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3566778899999999999996 899999 999999643 579999998865
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-09 Score=85.26 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=39.7
Q ss_pred cccccccccccccc--------------ccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKK--------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~d--------------Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
++..|+||++.|.+ ++.+++|+|.||..||.+|+. ....||.||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 35669999998876 444456999999999999998 45799999997653
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=3.3e-09 Score=107.25 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=45.1
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccCC
Q 015679 25 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 77 (403)
Q Consensus 25 l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~ 77 (403)
......|+||++.+.+|+. ++|||.||..||..|+......||.||..+...
T Consensus 329 ~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred cCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3445799999999999996 999999999999999985567999999988753
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.63 E-value=1.3e-08 Score=85.17 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=40.7
Q ss_pred ccccccccccccccc-----------------cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~dP-----------------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
++..|+||++.|..+ +.+++|+|.||..||..|+. ....||.||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 457899999998865 44579999999999999998 5689999999754
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.61 E-value=8.9e-09 Score=87.09 Aligned_cols=50 Identities=34% Similarity=0.836 Sum_probs=43.6
Q ss_pred ccccccccccccccccc-------cccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 25 IRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 25 l~eel~CpIClel~~dP-------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.+.|+||++.|.+| +. ++|||.||..||.+|+. ....||.||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEe-CCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 35678899999999987 54 89999999999999998 45799999998875
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=7.5e-09 Score=81.96 Aligned_cols=48 Identities=21% Similarity=0.623 Sum_probs=42.4
Q ss_pred ccccccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..+.++..|+||++.+.+|+. +||||. ||..|+..|+ .||.||..+..
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 556778899999999999996 899999 9999998774 79999998865
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.59 E-value=1.4e-08 Score=77.09 Aligned_cols=48 Identities=29% Similarity=0.521 Sum_probs=41.8
Q ss_pred ccccccccccccccccccC--CCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
++..|+||++.+.+++. + ||||. ||..|+..|+. ....||.||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 45679999999999985 5 99999 89999999998 55789999998753
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.54 E-value=2.6e-08 Score=75.35 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=40.8
Q ss_pred cccccccccccccccccC--CCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...|+||++.+.+++. + ||||. ||..|+..|+. ....||.||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 4679999999999985 5 99998 99999999987 45789999998753
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=1.5e-08 Score=76.65 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=41.6
Q ss_pred cccccccccccccccccC-CCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll-~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+.||||+++|.+||. + +|||+||+.||.+|+.. ...||.++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 3789999999999997 6 89999999999999984 4679999998875
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.7e-08 Score=99.36 Aligned_cols=50 Identities=24% Similarity=0.656 Sum_probs=44.2
Q ss_pred ccccccccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 21 ELPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 21 ~~~~l~eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.+..+++++.|+||++.+.+|+. ++|||. ||..|+..| ..||.||..+..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34677788999999999999997 899999 999999987 579999998864
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=5.5e-08 Score=78.79 Aligned_cols=47 Identities=28% Similarity=0.750 Sum_probs=38.6
Q ss_pred cccccccccccccccccc--CCCCCcccHHHHhhhhhc----C---CCCCCC--Cccc
Q 015679 27 KDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRL----G---NNECPA--CRTH 73 (403)
Q Consensus 27 eel~CpIClel~~dPvtl--l~CgH~FC~~CI~~~l~~----~---~~~CP~--CR~~ 73 (403)
+.+.|+||++.+..|+++ .+|||.||..||..+|.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 357899999999988753 379999999999999873 2 247999 9886
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.41 E-value=3.3e-08 Score=84.29 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------cccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 28 DVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 28 el~CpIClel~~dP-----------------vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
+-.|+||++.|.++ +.+++|+|.||..||..|+. ....||.||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 46899999998763 33358999999999999998 4679999999753
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.9e-07 Score=71.82 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=38.3
Q ss_pred ccccccccccccccccccCCCCCc-ccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+...|+||++.+.+++. +||||. ||..|+.. ...||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 35789999999999996 999999 99999984 2579999998865
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.2e-07 Score=71.71 Aligned_cols=51 Identities=16% Similarity=0.385 Sum_probs=41.1
Q ss_pred ccccccccccccc--cccccCCCC-----CcccHHHHhhhhhcC-CCCCCCCcccccCCC
Q 015679 27 KDVQCPICLGIIK--KTRTVMECL-----HRFCRECIDKSMRLG-NNECPACRTHCASRR 78 (403)
Q Consensus 27 eel~CpIClel~~--dPvtll~Cg-----H~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~ 78 (403)
++..|+||++.+. +++ ++||. |.|+..||.+|+... ...||.||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567999998774 677 48996 999999999999853 358999999886533
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=3e-06 Score=66.52 Aligned_cols=48 Identities=21% Similarity=0.538 Sum_probs=39.9
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcC-CCCCCCCcccccC
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 76 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 76 (403)
..|+||.+++..-+.+..|+|.|+..||.+|++.. ...||.|+.....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 56999999998655556899999999999999843 2689999987653
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.93 E-value=4.5e-06 Score=68.85 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.9
Q ss_pred cccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 30 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 30 ~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
.|++|.-.+..-..++||.|.||..|+..|.+.+...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 59999998887777799999999999999998788899999998754
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.31 E-value=0.0002 Score=53.66 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=39.0
Q ss_pred ccccccccccccccccccCCCC--C---cccHHHHhhhhhc-CCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKKTRTVMECL--H---RFCRECIDKSMRL-GNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~Cg--H---~FC~~CI~~~l~~-~~~~CP~CR~~~~ 75 (403)
+...|.||++...++. +.||. + .|+..||.+|+.. ++..||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567999998777777 48865 4 8999999999974 4679999999775
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.28 E-value=4.3e-05 Score=75.95 Aligned_cols=50 Identities=16% Similarity=0.566 Sum_probs=38.3
Q ss_pred cccccccccccccc----ccc-c--CCCCCcccHHHHhhhhhcC----------CCCCCCCcccccC
Q 015679 27 KDVQCPICLGIIKK----TRT-V--MECLHRFCRECIDKSMRLG----------NNECPACRTHCAS 76 (403)
Q Consensus 27 eel~CpIClel~~d----Pvt-l--l~CgH~FC~~CI~~~l~~~----------~~~CP~CR~~~~~ 76 (403)
....|+||+.++.+ |.. + ..|+|.|+..||.+|++.. .+.||.|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34679999998875 321 1 3699999999999999731 1479999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.23 E-value=0.0028 Score=59.95 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=40.7
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhcC-CCCCCCCcccccC
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 76 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 76 (403)
...|.||.+++..-+.+..|+|.|+..|+..|++.. ...||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467999999998777666799999999999999753 4589999987543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.74 E-value=0.0036 Score=50.58 Aligned_cols=35 Identities=20% Similarity=0.572 Sum_probs=27.8
Q ss_pred ccccccccccc-ccccccc-CCCCCcccHHHHhhhhh
Q 015679 27 KDVQCPICLGI-IKKTRTV-MECLHRFCRECIDKSMR 61 (403)
Q Consensus 27 eel~CpIClel-~~dPvtl-l~CgH~FC~~CI~~~l~ 61 (403)
+++.|+||.+. +.+|+.. +.|+|+||..|+..++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46889999965 6777732 78999999999998443
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.30 E-value=0.012 Score=65.29 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=59.0
Q ss_pred ccccccccccccccccccccccCCCC-CcccHHHHhhhhhcCCCCCCCCcccccCCCCCCCChhhhHHHHhHh
Q 015679 23 PEIRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 94 (403)
Q Consensus 23 ~~l~eel~CpIClel~~dPvtll~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 94 (403)
..+-+++.|||-+++|.+||+ ++-| ++|=+.+|.+|+.. ...||.=+.++.. ..+.+|..+...|....
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHH
Confidence 456678999999999999997 8987 69999999999984 5789999999886 67889998888886554
No 75
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=93.83 E-value=0.1 Score=44.21 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=65.6
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|-+++-...+..+|.|.+--..-..+++|.|+..+|-.++.+.+++- ||+--+. . . |+. ..|
T Consensus 31 iPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~--~--~-----p~~--------~~~ 92 (118)
T 3rui_B 31 IPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKA-IFIFVND--T--L-----PPT--------AAL 92 (118)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCC-EEEEBTT--B--C-----CCT--------TSB
T ss_pred eEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCcc-EEEEECC--c--c-----CCc--------cch
Confidence 66667677788999999998889999999999999999999988774 3332121 1 1 222 259
Q ss_pred hhcccccccCCCCceeehhhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQK 400 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~~ 400 (403)
|++|+..|-...|.|+|.|..-
T Consensus 93 m~~lY~~~kdeDGfLyv~Ys~~ 114 (118)
T 3rui_B 93 MSAIYQEHKDKDGFLYVTYSGE 114 (118)
T ss_dssp HHHHHHHHCCTTSCEEEEEEEC
T ss_pred HHHHHHHcCCCCCeEEEEEecc
Confidence 9999999988999999999753
No 76
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=93.66 E-value=0.075 Score=45.04 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=66.9
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|-+++-...+..+|.|.+--..-..+++|.++..+|-.++.+.+++ |=+|| .+ . . |+. ..
T Consensus 32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n~---~--~-----p~~--------~~ 92 (119)
T 3h9d_A 32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT-ND---T--V-----LPS--------SA 92 (119)
T ss_dssp EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE-TT---E--E-----CCT--------TS
T ss_pred EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE-CC---c--C-----CCc--------cc
Confidence 6677777788889999999999999999999999999999998887 44444 21 1 1 111 36
Q ss_pred hhhcccccccCCCCceeehhhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQK 400 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~~ 400 (403)
||++|+..|-...|.|+|.|..-
T Consensus 93 ~m~~lY~~~kd~DGfLyv~Ys~e 115 (119)
T 3h9d_A 93 QMADIYSKYKDEDGFLYMKYSGE 115 (119)
T ss_dssp BHHHHHHHHCCTTSCEEEEEECC
T ss_pred hHHHHHHHcCCCCCeEEEEEecc
Confidence 89999999988899999999753
No 77
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=92.36 E-value=0.2 Score=42.86 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=66.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|-+++-...+..+|.|.+-=..-..+++|.++..+|-.++.+.+++ |=+|| . . . . |+. ..
T Consensus 37 IPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V-n-n--~--l-----Ps~--------s~ 97 (125)
T 3m95_A 37 VPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV-N-N--V--I-----PPT--------SA 97 (125)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB-T-T--B--C-----CCT--------TS
T ss_pred EEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE-C-C--c--c-----CCc--------cc
Confidence 6667767778889999998888899999999999999999998887 33333 2 1 1 1 112 35
Q ss_pred hhhcccccccCCCCceeehhhhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQKQ 401 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~~~ 401 (403)
||++|+..+-...|-|+|.|+.-+
T Consensus 98 ~m~~lY~~~kdeDGfLY~~Ys~e~ 121 (125)
T 3m95_A 98 TMGSLYQEHHDEDFFLYIAFSDEN 121 (125)
T ss_dssp BHHHHHHHHCCTTSCEEEEEESSS
T ss_pred hHHHHHHHcCCCCCeEEEEecCcc
Confidence 899999999888999999998543
No 78
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=91.19 E-value=0.32 Score=40.40 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=63.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|-+.+-...+..+|.|++-=.....+++|.++..||-.++.+.+++ =||+.-+. . . |+. +.|
T Consensus 28 IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~-alfl~vn~--~--~-----p~~--------~~~ 89 (110)
T 2r2q_A 28 VPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPED-ALFFFVNN--T--I-----PPT--------SAT 89 (110)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTS-CCEEEBTT--B--C-----CCT--------TSB
T ss_pred eEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCC-cEEEEECC--E--e-----cCc--------cCh
Confidence 6666667777789999998888888999999999999999997766 23433221 1 1 111 358
Q ss_pred hhcccccccCCCCceeehhh
Q 015679 379 LAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~ 398 (403)
|++|+..|-+..|.|+|.|+
T Consensus 90 m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 90 MGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp HHHHHHHHCCTTSCEEEEEE
T ss_pred HHHHHHHcCCCCCEEEEEEe
Confidence 99999999888999999995
No 79
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=90.92 E-value=0.35 Score=39.39 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|.+.|.|.. .+|.|++.=.-...+++|.++..||-.++.+. -|=+||-. . . .|+ -++|
T Consensus 14 V~V~~~~~~--~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~----~-~-----~Ps--------~d~~ 71 (96)
T 1wz3_A 14 IVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNS----A-F-----SPN--------PDES 71 (96)
T ss_dssp EEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEE----E-E-----CCC--------TTSB
T ss_pred EEEEEEECC--CCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECC----c-c-----cCC--------hhhH
Confidence 566667763 39999999999999999999999999999887 44444421 1 1 122 2378
Q ss_pred hhcccccccCCCCceeehhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~ 399 (403)
+++|+..|-. .|.|+|.|.-
T Consensus 72 m~~LY~~~kd-DGfLyi~Ys~ 91 (96)
T 1wz3_A 72 VIDLYNNFGF-DGKLVVNYAC 91 (96)
T ss_dssp HHHHHHHHCB-TTBEEEEEES
T ss_pred HHHHHHHhCC-CCEEEEEEeC
Confidence 9999999988 9999999974
No 80
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=90.04 E-value=0.41 Score=40.28 Aligned_cols=84 Identities=14% Similarity=0.245 Sum_probs=64.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|-+++-...+..+|-|++--.....+++|.++..||-.++.+.+++- ||+.-+. . . |+. +.|
T Consensus 29 IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~a-lfl~vn~--~--~-----p~~--------~~~ 90 (117)
T 1eo6_A 29 VPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKA-IFLFVDK--T--V-----PQS--------SLT 90 (117)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSC-CEEEBTT--B--C-----CCT--------TSB
T ss_pred EEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCc-EEEEECC--E--e-----cCc--------cch
Confidence 66666667777899999887778889999999999999999977762 3433221 1 1 111 358
Q ss_pred hhcccccccCCCCceeehhhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQK 400 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~~ 400 (403)
|++|+..|-+..|.|+|.|..-
T Consensus 91 m~~LY~~~kd~DGfLyi~Ys~~ 112 (117)
T 1eo6_A 91 MGQLYEKEKDEDGFLYVAYSGE 112 (117)
T ss_dssp HHHHHHHHCCTTSCEEEEEECC
T ss_pred HHHHHHHhCCCCCEEEEEEeCC
Confidence 9999999988899999999753
No 81
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=89.13 E-value=0.44 Score=40.90 Aligned_cols=84 Identities=10% Similarity=0.228 Sum_probs=66.2
Q ss_pred eEEEEeecCCCC-CCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE-EecccCccCCCCCCCCChhhhhhcccc
Q 015679 299 VRLMLVSADTQC-APSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM-VKERLDAKGNQSTPIPTTDQLQILEGQ 376 (403)
Q Consensus 299 ~~l~l~~~d~~~-~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (403)
|-+++-...+.. +|.|.|--.--..+++|.++..+|-.++.+.+++- ||+ .-+. . . |+ -.
T Consensus 36 IPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~a-lFl~~vn~--~--~-----p~--------~~ 97 (130)
T 2zjd_A 36 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQA-FFLLVNGH--S--M-----VS--------VS 97 (130)
T ss_dssp EEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCC-EEEEETTT--E--E-----CC--------TT
T ss_pred eEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCce-EEEEEECC--c--c-----CC--------cc
Confidence 666777788888 99999988889999999999999999999988774 444 3222 1 1 11 14
Q ss_pred chhhcccccccCCCCceeehhhhh
Q 015679 377 ETLAGLRVNHTSNTDHLILAYRQK 400 (403)
Q Consensus 377 ~~~~~l~~~~~~~~~~l~~~y~~~ 400 (403)
.||++|+..|-...|.|+|.|+.-
T Consensus 98 ~~m~~lY~~~kdeDGfLyv~Ys~e 121 (130)
T 2zjd_A 98 TPISEVYESEKDEDGFLYMVYASQ 121 (130)
T ss_dssp SBHHHHHHHHCCTTSCEEEEEEEH
T ss_pred chHHHHHHHhCCCCCEEEEEEeCC
Confidence 679999999988899999999753
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.12 E-value=0.57 Score=38.10 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=40.5
Q ss_pred cccccccccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 20 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 20 v~~~~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+....+---+.|-.|-...+.=|. ...|.+|..|+...+. .+..||.|+.++..
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred cCCccccCcccChhhccccCCeee--ecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 344555566789888776664443 3459999999999988 67899999998865
No 83
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=89.11 E-value=0.24 Score=41.05 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccC--c-cCCCC----C--CCCChhhhhhccccchhhccccc
Q 015679 315 QQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLD--A-KGNQS----T--PIPTTDQLQILEGQETLAGLRVN 385 (403)
Q Consensus 315 ~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~--~-~~~~~----~--~~~~~~~~~~l~~~~~~~~l~~~ 385 (403)
|-=|+-=.++-||-|||+|+|..+.++.-.- +... . ....+ + +.+....+..|++..||..+-..
T Consensus 22 ~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~------~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneK 95 (111)
T 3gs2_A 22 QTRYIKTSGNATVDHLSKYLAVRLALEELRS------KGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEK 95 (111)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHHHHHHHH------HHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHH
T ss_pred ceEEEEcCCCccHHHHHHHHHHHHhHHHhhc------cccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhh
Confidence 5567777899999999999999888762111 1100 0 00000 0 12566788899999999999999
Q ss_pred ccCCCCceeehhhhh
Q 015679 386 HTSNTDHLILAYRQK 400 (403)
Q Consensus 386 ~~~~~~~l~~~y~~~ 400 (403)
||--+--|+|-|+.+
T Consensus 96 ywkvnkplelYYa~~ 110 (111)
T 3gs2_A 96 YWKVNKPMELYYAPT 110 (111)
T ss_dssp HTCSSSCEEEEEEEC
T ss_pred hccCCCCeeEEeccc
Confidence 999999999999754
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.83 E-value=0.16 Score=50.81 Aligned_cols=66 Identities=23% Similarity=0.438 Sum_probs=47.6
Q ss_pred cccccccccccccccccccccCCCCCcccHHH--Hhhhh-hcCCCCCCCCcccccCCCCCCCChhhhHHH
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCREC--IDKSM-RLGNNECPACRTHCASRRSLRDDPNYDALI 90 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~C--I~~~l-~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 90 (403)
.+.-.+.|||=...|..|+.-..|.|.-|+.- +..+. +.+...||.|.+.+.. ..+..+..+..++
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL 313 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDIL 313 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHH
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHH
Confidence 33445899999999999998889999977654 22222 2356799999988765 5676666665555
No 85
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.44 E-value=0.18 Score=50.33 Aligned_cols=67 Identities=19% Similarity=0.366 Sum_probs=49.9
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHhhhhh----cCCCCCCCCcccccCCCCCCCChhhhHHHHh
Q 015679 24 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISA 92 (403)
Q Consensus 24 ~l~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~ 92 (403)
.+.-.+.|||=...+..|+.-..|.|.-|+.- ..|+. .+...||.|.+.+.. ..+..+..+..++..
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 34446889999999999998889999977653 22332 356799999998875 667777777776643
No 86
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=87.40 E-value=0.95 Score=36.40 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=60.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccc-eEEEEEecccCccCCCCCCCCChhhhhhccccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 377 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (403)
|.+.+.|. -.+|.|.+-=.--..+++|.++..||-.++.+.+++ |=+|| .+ . .. |+ -++
T Consensus 6 v~v~fk~~--g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV-nn---~-~~-----P~--------~d~ 65 (91)
T 4gdk_A 6 IDILLKAV--GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV-NQ---S-FA-----PS--------PDQ 65 (91)
T ss_dssp EEEEEEEC--SSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE-TT---T-BC-----CC--------TTC
T ss_pred EEEEEEec--CCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE-CC---c-cC-----CC--------hhh
Confidence 44445554 368999998888899999999999999999997765 55554 11 1 11 11 256
Q ss_pred hhhcccccccCCCCceeehhhh
Q 015679 378 TLAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~~y~~ 399 (403)
|+++|+..|- ..|.|+|.|.-
T Consensus 66 ~~~~Ly~~~k-~DGfLyv~Ys~ 86 (91)
T 4gdk_A 66 EVGTLYECFG-SDGKLVLHYCK 86 (91)
T ss_dssp BHHHHHHHHC-BTTEEEEEEES
T ss_pred HHHHHHHHhC-CCCEEEEEEeC
Confidence 8999999997 79999999974
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.12 E-value=1 Score=36.16 Aligned_cols=48 Identities=31% Similarity=0.627 Sum_probs=37.9
Q ss_pred ccccccccccccc------ccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 28 DVQCPICLGIIKK------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 28 el~CpIClel~~d------Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
.-.|.||.+.+-- -|.+..|+-..|..|..--.+.++..||.|++.+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999987531 12335688899999999888888999999999875
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.96 E-value=0.75 Score=36.37 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=31.6
Q ss_pred ccccccccccccccccccCCC----CCcccHHHHhhhhhc----CCCCCCCC
Q 015679 27 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL----GNNECPAC 70 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~C----gH~FC~~CI~~~l~~----~~~~CP~C 70 (403)
..+.|.+|.+-+.+... ..| .|.||..|-..+++. ...-||.-
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 35789999999987654 334 699999999888863 22357663
No 89
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=74.19 E-value=4.2 Score=32.61 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=51.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|.+.+.|. -.+|.|++-=.--..+++|.++..||-.++.+ +-|=+||- +.. .|+ -++|
T Consensus 9 v~vrfk~~--g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVN----n~f------~Ps--------~d~~ 66 (91)
T 3w1s_C 9 IQIKFQPI--GSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYIN----NSF------APS--------PQQN 66 (91)
T ss_dssp EEEEEEEC--CC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEET----TTB------CCC--------TTSB
T ss_pred EEEEEEec--CCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEEC----Ccc------CCC--------cccH
Confidence 44555554 36899999888889999999999999999998 44545541 111 122 2458
Q ss_pred hhcccccccCCCCceeehhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~ 399 (403)
+++|+..|- ..|.|++.|.-
T Consensus 67 ~~~Ly~~fk-~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 67 IGELWMQFK-TNDELIVSYCA 86 (91)
T ss_dssp HHHHHHHHC-BTTEEEEEEEC
T ss_pred HHHHHHHhC-CCCEEEEEEeC
Confidence 999999997 59999999974
No 90
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=68.22 E-value=1.5 Score=34.37 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.5
Q ss_pred cccccccccc-----cccccCCCCCcccHHHHhhh
Q 015679 30 QCPICLGIIK-----KTRTVMECLHRFCRECIDKS 59 (403)
Q Consensus 30 ~CpIClel~~-----dPvtll~CgH~FC~~CI~~~ 59 (403)
-||-|..++. .+++...|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998887654 23554569999999998877
No 91
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.93 E-value=6.8 Score=28.95 Aligned_cols=41 Identities=27% Similarity=0.599 Sum_probs=29.7
Q ss_pred ccccccccccccc--cccCCCCCcccHHHHhhhhhcCCCCCCCC
Q 015679 29 VQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPAC 70 (403)
Q Consensus 29 l~CpIClel~~dP--vtll~CgH~FC~~CI~~~l~~~~~~CP~C 70 (403)
..|--|+..|.+. .....|++.||..|=. ++.+....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 4598898888543 3357899999999954 334456789988
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.69 E-value=2.5 Score=32.83 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=24.7
Q ss_pred cccccc--cccccc-----cccccC-----CCCCcccHHHHhhhhh
Q 015679 28 DVQCPI--CLGIIK-----KTRTVM-----ECLHRFCRECIDKSMR 61 (403)
Q Consensus 28 el~CpI--Clel~~-----dPvtll-----~CgH~FC~~CI~~~l~ 61 (403)
-.-||- |...+. ..+... .|++.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 456987 877664 235544 6999999999988754
No 93
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.37 E-value=5.1 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=20.9
Q ss_pred ccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccc
Q 015679 37 IIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 74 (403)
Q Consensus 37 l~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 74 (403)
++..|..+..||+.|+ .-+. ....||.|+..-
T Consensus 63 L~v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp EEECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred EEEECcChhhCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 4445555689999992 2222 457899998743
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=53.46 E-value=13 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=30.9
Q ss_pred ccccccccccccccccccc-cCCCCCcccHHHHhhhhh---------------cCCCCCCCCcc
Q 015679 25 IRKDVQCPICLGIIKKTRT-VMECLHRFCRECIDKSMR---------------LGNNECPACRT 72 (403)
Q Consensus 25 l~eel~CpIClel~~dPvt-ll~CgH~FC~~CI~~~l~---------------~~~~~CP~CR~ 72 (403)
+..+-.|+||...-..-+. +--|+..|+..|+.+.-. .....||.|..
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3457789999854332210 123899999999998611 12357999955
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.00 E-value=13 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=31.7
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhhc---CCCCCCCCccc
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTH 73 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~---~~~~CP~CR~~ 73 (403)
....|.||.+- .+=+..-.|...|+..|+...+.. +...||.|...
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999863 222223458899999999766553 45689999764
No 96
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=51.03 E-value=12 Score=28.00 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.|.+..+++++++ +.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 5 ~i~vk~~~g~~~~------~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 5 RIVVKTLMGRTII------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECGGGCEEE------EECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3444445665542 5788999999999999999999999987765
No 97
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=50.32 E-value=16 Score=29.31 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=50.5
Q ss_pred cccccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhh
Q 015679 292 ENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQ 371 (403)
Q Consensus 292 ~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (403)
....++.|+++- +.+.+++ +.|-|+-||..|-+-||.|.++++++.=| .+.. .
T Consensus 17 ~~~~mIqI~Vk~--~~Gkk~~------v~v~p~DTI~~LK~~I~~k~Gip~~qQrL--if~G-----------------k 69 (93)
T 3plu_A 17 RGSHMIEVVVND--RLGKKVR------VKCLGEDSVGDFKKVLSLQIGTQPNKIVL--QKGG-----------------S 69 (93)
T ss_dssp ---CEEEEEEEC--TTSCEEE------EEEETTSBHHHHHHHHHHHHTCCGGGEEE--EETT-----------------E
T ss_pred CCCceEEEEEEC--CCCCEEE------EEECCcCHHHHHHHHHHHHhCCCHHHEEE--EeCC-----------------E
Confidence 445566677764 3444443 58999999999999999999999998754 2221 4
Q ss_pred hccccchhhcccccccCCCCceeehh
Q 015679 372 ILEGQETLAGLRVNHTSNTDHLILAY 397 (403)
Q Consensus 372 ~l~~~~~~~~l~~~~~~~~~~l~~~y 397 (403)
.|+++.||++....- ...|.|-|
T Consensus 70 ~LkD~~TL~dY~I~d---gstLhL~~ 92 (93)
T 3plu_A 70 VLKDHISLEDYEVHD---QTNLELYY 92 (93)
T ss_dssp ECCTTSBTGGGTCCT---TCEEEEEE
T ss_pred EccCcCCHHHcCCCC---CCEEEEEe
Confidence 477788887765432 33455544
No 98
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.29 E-value=6.6 Score=42.85 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=37.5
Q ss_pred ccccccccccccccc---------cccCCCCCcc--------------------cHHHHhhhhhc-------CCCCCCCC
Q 015679 27 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 70 (403)
Q Consensus 27 eel~CpIClel~~dP---------vtll~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 70 (403)
+-..|+-|+.-+.+| +.++.||.+| |..|-.++-.. ....||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 456899999888766 4567899888 99999988752 23579999
Q ss_pred ccccc
Q 015679 71 RTHCA 75 (403)
Q Consensus 71 R~~~~ 75 (403)
.-.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 87653
No 99
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.71 E-value=2.7 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=25.1
Q ss_pred ccccccccccc-----cccccCC--CCCcccHHHHhhhhhc
Q 015679 29 VQCPICLGIIK-----KTRTVME--CLHRFCRECIDKSMRL 62 (403)
Q Consensus 29 l~CpIClel~~-----dPvtll~--CgH~FC~~CI~~~l~~ 62 (403)
-.||-|.-.+. +-|+... |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46999988776 3455444 8999999998887653
No 100
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=49.64 E-value=15 Score=27.41 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=49.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+..++++++ .+.+.|+.||..|-+.|+.++.++++..-|+. ++ ..|+++.|
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g------------------~~L~d~~t 58 (85)
T 3mtn_B 4 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AG------------------KQLEDGRT 58 (85)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TT------------------EECCTTSB
T ss_pred EEEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-CC------------------EECCCCCC
Confidence 3445555666554 35788999999999999999999999987764 11 13556677
Q ss_pred hhcccccccCCCCceeehhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~ 399 (403)
|+++.. .....|.|..+.
T Consensus 59 L~~~~i---~~~~~l~l~~r~ 76 (85)
T 3mtn_B 59 LSDYNI---QKWSTLFLLLRL 76 (85)
T ss_dssp TGGGTC---CTTCEEEEECCC
T ss_pred HHHcCC---CCCCEEEEEEEC
Confidence 777643 224445555443
No 101
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=48.14 E-value=7.2 Score=41.77 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=37.1
Q ss_pred ccccccccccccccc---------cccCCCCCcc--------------------cHHHHhhhhhc-------CCCCCCCC
Q 015679 27 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 70 (403)
Q Consensus 27 eel~CpIClel~~dP---------vtll~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 70 (403)
+-..|+-|+.-+.+| +.++.||.+| |..|-.++-.- ....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 456899999888766 4567888888 99999988752 23579999
Q ss_pred cccc
Q 015679 71 RTHC 74 (403)
Q Consensus 71 R~~~ 74 (403)
.-.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 8766
No 102
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=47.51 E-value=22 Score=25.66 Aligned_cols=43 Identities=7% Similarity=0.207 Sum_probs=34.0
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|.+-.++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 3 i~vk~~~g~~~------~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 3 IFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEEEETTSCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEcCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 34444555543 46788999999999999999999999888775
No 103
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.35 E-value=12 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=23.4
Q ss_pred cccccccccccccc---ccccCCCCCcccHHHHhhh
Q 015679 27 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKS 59 (403)
Q Consensus 27 eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~ 59 (403)
+...|.+|...|.- -.-.-.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34579999887752 2223469999999997654
No 104
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.89 E-value=4.5 Score=26.67 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=11.9
Q ss_pred cccccccccccccccc
Q 015679 28 DVQCPICLGIIKKTRT 43 (403)
Q Consensus 28 el~CpIClel~~dPvt 43 (403)
-|.||||+..+..+-.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4669999888877654
No 105
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=45.59 E-value=8.3 Score=42.01 Aligned_cols=49 Identities=22% Similarity=0.447 Sum_probs=36.8
Q ss_pred ccccccccccccccc---------cccCCCCCcc--------------------cHHHHhhhhhc-------CCCCCCCC
Q 015679 27 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 70 (403)
Q Consensus 27 eel~CpIClel~~dP---------vtll~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 70 (403)
+-..|+-|+.-+.+| +.++.||.+| |..|-.++-.- ....||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 446899999888766 4557788776 99999998752 23579999
Q ss_pred ccccc
Q 015679 71 RTHCA 75 (403)
Q Consensus 71 R~~~~ 75 (403)
.-.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 87654
No 106
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.78 E-value=2.7 Score=34.30 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=28.1
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCccccc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 75 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 75 (403)
..||+|...+.- .. ++.+|..|-..+.. ...||.|..++.
T Consensus 33 ~~CP~Cq~eL~~-~g----~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-DN----GHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-ET----TEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee-cC----CEEECccccchhhc--cccCcchhhHHH
Confidence 889999987652 21 34458888766544 358999998764
No 107
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=42.73 E-value=19 Score=26.15 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=31.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhh---cCCCCCCCCcc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 72 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 72 (403)
..+..|.+|... .+=+..-.|...|+..|+..-+. .+...||.|..
T Consensus 9 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345679999873 22222245888999999987543 24568999965
No 108
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.95 E-value=2.6 Score=37.04 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=30.4
Q ss_pred ccccccccccccc----cccccCCCCCcccHHHHhhhhhcCCCCCCCCcc
Q 015679 27 KDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 72 (403)
Q Consensus 27 eel~CpIClel~~----dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~ 72 (403)
.+-.|.+|...|. ..+.+..|.|.+|..|-...-......|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4678999998764 334457899999999963221223346766655
No 109
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=41.47 E-value=29 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=34.4
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|.+-.++++++ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 3 i~vk~~~g~~~------~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 3 IKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEECTTSCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 44445566554 36788999999999999999999999988765
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.69 E-value=22 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=27.9
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhh----------hcCCCCCCCCcc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSM----------RLGNNECPACRT 72 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l----------~~~~~~CP~CR~ 72 (403)
+..|.+|.+-=. =+..-.|-..||..||..-+ ..+...||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345666654221 11123688999999998654 235678999964
No 111
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=39.38 E-value=27 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=34.7
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
+.|.+-. +++.+ .+.+.|+.||..|.+.|+.+++++++..-|+.
T Consensus 5 m~i~vk~-~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEE-CCEEE------EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 4555555 55543 36788999999999999999999999988764
No 112
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.67 E-value=36 Score=25.49 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+-.++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.. + ..|+++.|
T Consensus 8 m~i~Vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~-G------------------k~L~d~~t 62 (87)
T 1wh3_A 8 IQVFVKNPDGGSY------AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ-G------------------QVLQDWLG 62 (87)
T ss_dssp EEEEEEETTTEEE------EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET-T------------------EECCSSSB
T ss_pred EEEEEEcCCCCEE------EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC-C------------------EEccCCCC
Confidence 4445555666544 367889999999999999999999999887641 1 23566778
Q ss_pred hhcccc
Q 015679 379 LAGLRV 384 (403)
Q Consensus 379 ~~~l~~ 384 (403)
|+++..
T Consensus 63 L~~~~i 68 (87)
T 1wh3_A 63 LGIYGI 68 (87)
T ss_dssp HHHHTC
T ss_pred HHHCCC
Confidence 887654
No 113
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.45 E-value=39 Score=24.72 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.4
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.|.+-.++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 9 ~i~vk~~~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 9 QLTVKALQGREC------SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp EEEEEETTSCEE------EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 334445666544 36788999999999999999999999888765
No 114
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=38.05 E-value=30 Score=26.57 Aligned_cols=44 Identities=7% Similarity=0.213 Sum_probs=35.2
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
+|.+-.++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 3 ~i~vk~~~g~~~------~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 3 QIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 445555677654 25788999999999999999999999987764
No 115
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=35.94 E-value=17 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=32.9
Q ss_pred ccccccccccccccc--cccCCCCCcccHHHHhhhhhc---CCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRL---GNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~dP--vtll~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~~ 75 (403)
+...|+||......- +..-.|..-|+..|+.-.... +...||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 456799998765431 222358888999999654432 3568999987654
No 116
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=35.30 E-value=18 Score=26.35 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=30.3
Q ss_pred ccccccccccccccccccCCCCCcccHHHHhhhhh---cCCCCCCCCccc
Q 015679 27 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 73 (403)
Q Consensus 27 eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR~~ 73 (403)
.+..|.+|... .+=+..-.|...|+..|+..-+. .+...||.|...
T Consensus 8 ~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35679999863 22222235888899999975443 245689999764
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.05 E-value=17 Score=27.32 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=22.2
Q ss_pred cccccccccccc---ccccCCCCCcccHHHHhhh
Q 015679 29 VQCPICLGIIKK---TRTVMECLHRFCRECIDKS 59 (403)
Q Consensus 29 l~CpIClel~~d---Pvtll~CgH~FC~~CI~~~ 59 (403)
-.|.+|...|.- ..-.-.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 479999987752 2223469999999997543
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.05 E-value=13 Score=31.14 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=23.0
Q ss_pred ccccccccccccc---cccCCCCCcccHHHHhhhh
Q 015679 29 VQCPICLGIIKKT---RTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 29 l~CpIClel~~dP---vtll~CgH~FC~~CI~~~l 60 (403)
..|.+|...|.-. .-+-.||+.||..|....+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 4699999877522 2234699999999976543
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.04 E-value=12 Score=34.01 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=25.2
Q ss_pred ccccccccccccccccc---ccccCCCCCcccHHHHhhh
Q 015679 24 EIRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKS 59 (403)
Q Consensus 24 ~l~eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~ 59 (403)
.+.+.-.|.+|...|.- -.-+-.||+.||..|....
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 44556789999987752 2223469999999997654
No 120
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=34.10 E-value=34 Score=26.11 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=36.5
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 300 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 300 ~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.+.+..++++++ .+.+.|+.||..|.+-|+.++.++++..-|+.
T Consensus 11 ~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 11 QLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 456667777765 36788999999999999999999999888765
No 121
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Probab=33.48 E-value=19 Score=35.86 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhcccccceeEEEEeecCCCCCC--CCCCCcccccCc
Q 015679 280 LNKLVEYLRSLQENNDELDVRLMLVSADTQCAP--SLQQPYLCCQPS 324 (403)
Q Consensus 280 ~~kl~~~l~~~~~~~~e~~~~l~l~~~d~~~~p--~l~~p~l~c~pt 324 (403)
|.++++-|...+ ++.++|.|.|||.|+..|| .|+.|-|--.|-
T Consensus 346 It~~l~~l~~~~--d~~~~v~V~iv~~~g~~~~~~~~~~~~i~~~p~ 390 (394)
T 1js8_A 346 ITTSLKHLRLDA--HDDFDIKVTIKGIDGHVLSNKYLSPPTVFLAPA 390 (394)
T ss_dssp CHHHHHHTTCCT--TSCEEEEEEEEESSSCEECGGGSCCCEEEEECC
T ss_pred chHHHHHcCCCc--CCceeEEEEEEecCCCCCcccccCCCeEEEecC
Confidence 678888887643 3678999999999999999 788887776664
No 122
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=33.04 E-value=43 Score=24.59 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhc
Q 015679 294 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQIL 373 (403)
Q Consensus 294 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (403)
+.++.|++ -.++++++. +.+.|+.||.+|-+.|+..+++++++.-|+. ++ ..|
T Consensus 2 ~~~m~i~V--k~~~g~~~~------~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G------------------~~L 54 (79)
T 3phx_B 2 DEPLSILV--RNNKGRSST------YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EG------------------KPL 54 (79)
T ss_dssp -CCEEEEE--ECTTSCEEE------EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TT------------------EEC
T ss_pred CCCEEEEE--EeCCCCEEE------EEECCcChHHHHHHHHHhhcCCCHHHEEEEE-CC------------------EEC
Confidence 34555544 455666553 6888999999999999999999999986653 11 245
Q ss_pred cccchhhcccc
Q 015679 374 EGQETLAGLRV 384 (403)
Q Consensus 374 ~~~~~~~~l~~ 384 (403)
+++.||+++..
T Consensus 55 ~d~~tL~~~~i 65 (79)
T 3phx_B 55 EDQLPLGEYGL 65 (79)
T ss_dssp CTTSBGGGGTC
T ss_pred CCCCcHHHCCC
Confidence 66778887643
No 123
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=33.03 E-value=32 Score=25.74 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=50.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+-.++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+. ++ ..|+++.|
T Consensus 13 m~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G------------------~~L~d~~t 67 (88)
T 3dbh_I 13 MLIKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SG------------------KQMNDEKT 67 (88)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TT------------------EECCTTSB
T ss_pred EEEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CC------------------eECCCCCc
Confidence 4455555677665 35788999999999999999999998876654 11 24667788
Q ss_pred hhcccccccCCCCceeehhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQ 399 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~ 399 (403)
|+++.. ....-|.|..+.
T Consensus 68 L~~~~i---~~~~~i~l~~rl 85 (88)
T 3dbh_I 68 AADYKI---LGGSVLHLVLRL 85 (88)
T ss_dssp GGGGTC---CTTCEEEECCCC
T ss_pred HHHcCC---CCCCEEEEEEeC
Confidence 888743 223445555443
No 124
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=32.15 E-value=56 Score=25.25 Aligned_cols=43 Identities=7% Similarity=0.207 Sum_probs=34.3
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|.+-.++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 3 I~Vk~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 3 IFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEEETTSCEE------EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 34445566543 36788999999999999999999999988775
No 125
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.89 E-value=13 Score=31.66 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=28.5
Q ss_pred ccccccccccccc----cccccCCCCCcccHHHHhhhhh---cCCCCCCCCcc
Q 015679 27 KDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 72 (403)
Q Consensus 27 eel~CpIClel~~----dPvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 72 (403)
.+-.|.+|...|. ....+..|.|.+|..|-..... .....|-.|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4578999998873 2234567888888888654311 11235666654
No 126
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=31.85 E-value=43 Score=26.91 Aligned_cols=45 Identities=7% Similarity=0.220 Sum_probs=35.9
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
+.|.+..++++.+ .+.+.|+.||..|-+.|+.++.++++..=|+.
T Consensus 36 m~I~Vk~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 4455556677665 36889999999999999999999999886664
No 127
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.80 E-value=22 Score=28.88 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=37.7
Q ss_pred ccccccccc-ccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 20 VELPEIRKD-VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 20 v~~~~l~ee-l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
+....++.+ |.|..|...|........=|..||..|..+.+. ..|+.|.+++..
T Consensus 21 a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 21 AENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp ETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred eCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCc
Confidence 333445544 889999988765322245678899999877544 579999998874
No 128
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.49 E-value=19 Score=27.93 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=35.4
Q ss_pred ccccc-cccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIRK-DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~e-el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..++. -|.|..|...|........=+..||..|..+.+. ..|..|..++..
T Consensus 27 ~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 78 (101)
T 2cup_A 27 RFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---PKCKGCFKAIVA 78 (101)
T ss_dssp EEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC---CBCSSSCCBCCS
T ss_pred cChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC---CccccCCCcccc
Confidence 34443 3789999988864432244678899999866443 579999988863
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.42 E-value=22 Score=32.57 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=25.4
Q ss_pred ccccccccccccccccc---ccccCCCCCcccHHHHhhhh
Q 015679 24 EIRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 24 ~l~eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l 60 (403)
.+.+.-.|.+|...|.- -.-+-.||+.||..|-....
T Consensus 160 ~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 160 DWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred ccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 34455689999877652 22235799999999976543
No 130
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.39 E-value=25 Score=28.66 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=38.0
Q ss_pred cccccc-ccccccccccccc---ccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 22 LPEIRK-DVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 22 ~~~l~e-el~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
...++. -|.|..|...|.+ ... ..=+..||..|..+.+. ....|..|..++..
T Consensus 25 ~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 25 DSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp TEEECHHHHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CceeHhhCCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 344553 3789999998862 332 45678899999988775 23379999988865
No 131
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.09 E-value=16 Score=29.80 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=11.5
Q ss_pred cccHHHHhhhhhc
Q 015679 50 RFCRECIDKSMRL 62 (403)
Q Consensus 50 ~FC~~CI~~~l~~ 62 (403)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999973
No 132
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=31.08 E-value=53 Score=24.65 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=36.4
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 294 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 294 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
...+.|++ -.++++++ .+.+.|+.||.+|-+.|+.++.++++..-|+.
T Consensus 15 ~~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 15 PDSLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp CCEEEEEE--EETTSCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCeEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 34455544 45666654 36788999999999999999999999986654
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.85 E-value=17 Score=29.71 Aligned_cols=12 Identities=42% Similarity=1.076 Sum_probs=11.1
Q ss_pred cccHHHHhhhhh
Q 015679 50 RFCRECIDKSMR 61 (403)
Q Consensus 50 ~FC~~CI~~~l~ 61 (403)
.||+.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 134
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=30.73 E-value=49 Score=25.19 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=44.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+-.++++++ .+.+.|+.||..|-+.|+..++++++..-|+. ++ ..|+++.|
T Consensus 18 m~i~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~G------------------k~L~D~~t 72 (91)
T 3v6c_B 18 MQIFVNTLTGTHI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AG------------------KQLEDGRT 72 (91)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TT------------------EECCTTCB
T ss_pred EEEEEEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CC------------------eECCCcCc
Confidence 3444455677665 36788999999999999999999999886654 11 13566778
Q ss_pred hhcccc
Q 015679 379 LAGLRV 384 (403)
Q Consensus 379 ~~~l~~ 384 (403)
|+++..
T Consensus 73 L~~~gi 78 (91)
T 3v6c_B 73 LSDYNI 78 (91)
T ss_dssp TGGGTC
T ss_pred HHHCCC
Confidence 887643
No 135
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=30.71 E-value=41 Score=26.22 Aligned_cols=66 Identities=9% Similarity=0.170 Sum_probs=44.9
Q ss_pred cccccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhh
Q 015679 292 ENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQ 371 (403)
Q Consensus 292 ~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (403)
..+..+.|+++ .++++.+. |.+.|+.||..|-+.|+.++.++++..-|+. ++ .
T Consensus 18 ~~~~~m~I~Vk--~~~g~~~~------l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~G------------------k 70 (98)
T 4hcn_B 18 FQGRPMQIFVK--TLTGKTIT------LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AG------------------K 70 (98)
T ss_dssp ----CCEEEEE--ETTCCEEE------EECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TT------------------E
T ss_pred CCCCeEEEEEE--eCCCCEEE------EEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CC------------------E
Confidence 34445555554 45676642 5788999999999999999999999886654 11 2
Q ss_pred hccccchhhcccc
Q 015679 372 ILEGQETLAGLRV 384 (403)
Q Consensus 372 ~l~~~~~~~~l~~ 384 (403)
.|+++.||+++..
T Consensus 71 ~L~D~~tL~~~~i 83 (98)
T 4hcn_B 71 QLEDGRTLSDYNI 83 (98)
T ss_dssp ECCTTCBSGGGTC
T ss_pred ECCCCCcHHHCCC
Confidence 3566778887643
No 136
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.65 E-value=47 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=35.8
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 295 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 295 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
.+|.|++ -.++++++ .|.+.|+.||.+|-+.|+..+.++++..-|+.
T Consensus 4 ~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 4 DSLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CEEEEEE--EETTCCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3444544 45566655 25888999999999999999999999886654
No 137
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.08 E-value=11 Score=37.31 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=0.0
Q ss_pred ccccccccccccc---ccccCCCCCcccHHHHhhhhhc------CCCCCCCCccc
Q 015679 28 DVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRL------GNNECPACRTH 73 (403)
Q Consensus 28 el~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~~------~~~~CP~CR~~ 73 (403)
...|.+|...|.- -.-+-.||+.||..|....+.. ....|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4579999887652 2223579999999998765421 12356666443
No 138
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=30.03 E-value=18 Score=31.92 Aligned_cols=46 Identities=20% Similarity=0.410 Sum_probs=30.4
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhhc---CCCCCCCCcccc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTHC 74 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~ 74 (403)
+..|.+|..- .+=+.+-.|...|+..|+..-+.. +...||.|+..-
T Consensus 4 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3559999854 222223458888999998665442 456899998743
No 139
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=30.02 E-value=44 Score=25.48 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=34.4
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|.+-.++++++ .+.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 3 I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 3 IKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 44455677665 35889999999999999999999999886654
No 140
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=29.96 E-value=60 Score=24.62 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=50.0
Q ss_pred ccccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhh
Q 015679 293 NNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQI 372 (403)
Q Consensus 293 ~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (403)
|+.++.|.+ -.++++.+ .+.+.|+.||..|.+.|+.+++++++..-|+.. + ..
T Consensus 1 m~~~m~I~V--k~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-G------------------k~ 53 (88)
T 2hj8_A 1 MDEPLSILV--RNNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE-G------------------KP 53 (88)
T ss_dssp -CCEEEEEE--EETTSCEE------EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS-S------------------SC
T ss_pred CCccEEEEE--ECCCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC-C------------------EE
Confidence 344544444 45566554 367889999999999999999999998877631 1 13
Q ss_pred ccccchhhcccccccCCCCceeehhh
Q 015679 373 LEGQETLAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 373 l~~~~~~~~l~~~~~~~~~~l~~~y~ 398 (403)
|+++.||+++... ....|.|.++
T Consensus 54 L~D~~tL~~~~I~---~g~~i~l~~~ 76 (88)
T 2hj8_A 54 LEDQLPLGEYGLK---PLSTVFMNLR 76 (88)
T ss_dssp CCTTSBHHHHHCS---TTCEEEEEEC
T ss_pred CCCCCcHHHcCCC---CCCEEEEEEE
Confidence 5667788876432 2334555544
No 141
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=29.60 E-value=43 Score=27.14 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=29.6
Q ss_pred ccccccccccccc-----c---cccccCCCCCcccHHHHhh------hhhcCCCCCCCCc
Q 015679 26 RKDVQCPICLGII-----K---KTRTVMECLHRFCRECIDK------SMRLGNNECPACR 71 (403)
Q Consensus 26 ~eel~CpIClel~-----~---dPvtll~CgH~FC~~CI~~------~l~~~~~~CP~CR 71 (403)
.....|.+|+..- . +=+....|+..|+..|+.- .+......||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3456799997642 1 1123346999999999952 2334567888885
No 142
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.50 E-value=8.4 Score=28.25 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=31.9
Q ss_pred ccccccccccccc---cc-cccCCCCCcccHHHHhhhh------hcCCCCCCCCccccc
Q 015679 27 KDVQCPICLGIIK---KT-RTVMECLHRFCRECIDKSM------RLGNNECPACRTHCA 75 (403)
Q Consensus 27 eel~CpIClel~~---dP-vtll~CgH~FC~~CI~~~l------~~~~~~CP~CR~~~~ 75 (403)
++..|.||..... .. +..-.|...|+..|+..-+ ..+...||.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4567999987532 22 2224688899999987533 235678999876443
No 143
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.84 E-value=9.7 Score=27.77 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=29.9
Q ss_pred ccccccccccccccc---ccccCCCCCcccHHHHhhhhh----cCCCCCCCCccc
Q 015679 26 RKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 73 (403)
Q Consensus 26 ~eel~CpIClel~~d---Pvtll~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 73 (403)
.+...|+||...+.+ -|..-.|..=|+..|+.-... .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345779999987642 223335777778888753222 134679988763
No 144
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.79 E-value=43 Score=24.57 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=45.7
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+..++++.+ .+-+.|+-+|..|-+.++.+.++++++.-++..- ..|+++.|
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G-------------------~~L~d~~t 58 (79)
T 2uyz_B 4 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG-------------------QRIADNHT 58 (79)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETT-------------------EECCTTCC
T ss_pred EEEEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCCCcccEEEEECC-------------------EEeCCCCC
Confidence 5566667777665 3688999999999999999999999887665411 34566777
Q ss_pred hhcccc
Q 015679 379 LAGLRV 384 (403)
Q Consensus 379 ~~~l~~ 384 (403)
|+++..
T Consensus 59 l~~~~i 64 (79)
T 2uyz_B 59 PKELGM 64 (79)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 777653
No 145
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.45 E-value=24 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=23.5
Q ss_pred cccccccccccc---cccccCCCCCcccHHHHhhhh
Q 015679 28 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 28 el~CpIClel~~---dPvtll~CgH~FC~~CI~~~l 60 (403)
...|.+|...|. .-.-.-.||+.||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 456999988765 222235799999999987654
No 146
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.40 E-value=35 Score=26.28 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=35.6
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 294 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 294 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
...+.|+++. + ++.+ .|.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 15 ~~~m~i~Vk~--~-g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 15 SRIIRVSVKT--P-QDCH------EFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SCEEEEEEEC--S-SSEE------EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred CCcEEEEEEE--C-CeEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3445555554 3 5544 46889999999999999999999988877654
No 147
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.89 E-value=53 Score=26.46 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=50.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|.|.+-.+.++++. |.|.|+-||..|-+-||.+..++++++=|..- . .+|+++.|
T Consensus 29 m~I~VKtl~Gk~i~------lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~--G-----------------k~L~D~~T 83 (100)
T 1uh6_A 29 IEVVCNDRLGKKVR------VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW--Y-----------------TIFKDHVS 83 (100)
T ss_dssp EEEEEECSSSSCEE------EEEETTSBHHHHHHHHHHHHCCCGGGCEEEET--T-----------------EECCSSCB
T ss_pred EEEEEECCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC--C-----------------EECCCCCC
Confidence 44555577676666 79999999999999999999999988755421 1 24666788
Q ss_pred hhcccccccCCCCceeehh
Q 015679 379 LAGLRVNHTSNTDHLILAY 397 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y 397 (403)
|++.... ....|.|.|
T Consensus 84 L~dygI~---~gstlhL~~ 99 (100)
T 1uh6_A 84 LGDYEIH---DGMNLELYY 99 (100)
T ss_dssp HHHHTCC---TTEEEEEEC
T ss_pred HHHcCCC---CCCEEEEEe
Confidence 8865432 233466666
No 148
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=26.87 E-value=88 Score=23.04 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=48.8
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhc---cCCcccceEEEEEecccCccCCCCCCCCChhhhhhccc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQ---TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEG 375 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~---~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (403)
+.|.+-.++++.+ .+.+.|+.||..|.+.|+.+ +.++++..-|+.. + ..|++
T Consensus 6 m~i~vk~~~g~~~------~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~-G------------------k~L~D 60 (85)
T 2wyq_A 6 VTITLKTLQQQTF------KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA-G------------------KILSD 60 (85)
T ss_dssp EEEEEEETTSCEE------EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET-T------------------EECCT
T ss_pred EEEEEEECCCCEE------EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC-C------------------EECcC
Confidence 4445556666655 36788999999999999998 7889998877641 1 24667
Q ss_pred cchhhcccccccCCCCceeehhh
Q 015679 376 QETLAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 376 ~~~~~~l~~~~~~~~~~l~~~y~ 398 (403)
+.||+++... ....|.|..+
T Consensus 61 ~~tL~~~~i~---~g~~i~l~~~ 80 (85)
T 2wyq_A 61 DVPIRDYRID---EKNFVVVMVT 80 (85)
T ss_dssp TSBGGGGCCC---TTSEEEEEEC
T ss_pred CCCHHHcCCC---CCCEEEEEEc
Confidence 7888876432 2334555443
No 149
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=26.42 E-value=37 Score=25.91 Aligned_cols=59 Identities=10% Similarity=0.220 Sum_probs=39.9
Q ss_pred cccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccccccCCCCceeeh
Q 015679 320 CCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILA 396 (403)
Q Consensus 320 ~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 396 (403)
.+-|+-+|.+|.+.|+.+++..+....||+-..+ +..|. +..+.||++|-- .||+++..
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-------------~~~l~-~~~~~~l~~lgl----~hGd~l~l 77 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-------------TGEIT-ASSSKSLHLLKI----KHGDLLFL 77 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-------------GGGSS-SCCCCTTTTTCC----CTTCCEEC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC-------------CCccc-CCCCCCHHHcCC----CCCCEEEE
Confidence 3568889999999999999988776666553322 22222 226778887744 37888753
No 150
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.34 E-value=24 Score=27.12 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=23.4
Q ss_pred cccccccccccccc---cccCCCCCcccHHHHhhhh
Q 015679 28 DVQCPICLGIIKKT---RTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 28 el~CpIClel~~dP---vtll~CgH~FC~~CI~~~l 60 (403)
...|.+|...|.-- .-.-.||..||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 34699999877521 2234699999999987543
No 151
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.26 E-value=26 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.506 Sum_probs=29.9
Q ss_pred cccccccccccccc--ccccCCCCCcccHHHHhhhhh---cCCCCCCCCc
Q 015679 27 KDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMR---LGNNECPACR 71 (403)
Q Consensus 27 eel~CpIClel~~d--Pvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR 71 (403)
.+..|.||.+.-.. =+....|+..|+..|+...+. .....||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45679999765321 133457999999999976554 2345777774
No 152
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.19 E-value=46 Score=22.88 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=27.3
Q ss_pred cccccccccc--cccccCCCCCcccHHHHhhhhh---cCCCCCCCCcc
Q 015679 30 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 72 (403)
Q Consensus 30 ~CpIClel~~--dPvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 72 (403)
.|.||...-. +=+..-.|...|+..|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888875422 1122235888999999965443 24567999965
No 153
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=26.17 E-value=69 Score=25.54 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=49.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+-.++++.+ .+.+.|+.||..|.+-|+.++.++++..-|+.. + ..|.++.|
T Consensus 36 m~I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-G------------------k~L~D~~t 90 (111)
T 2ojr_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-G------------------KQLEDGRT 90 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET-T------------------EECCSSCB
T ss_pred EEEEEEcCCCCEE------EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC-C------------------EECCCCCc
Confidence 4555556666554 367889999999999999999999998877651 1 23566778
Q ss_pred hhcccccccCCCCceeehhh
Q 015679 379 LAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~ 398 (403)
|+++... ....|.|..+
T Consensus 91 L~~~gI~---~gs~I~l~~r 107 (111)
T 2ojr_A 91 LSDYNIQ---KESTLHLVLR 107 (111)
T ss_dssp TTTTTCC---TTCEEEEEEC
T ss_pred HHHcCCC---CCCEEEEEEe
Confidence 8776432 2333555444
No 154
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.06 E-value=23 Score=29.68 Aligned_cols=45 Identities=24% Similarity=0.648 Sum_probs=28.6
Q ss_pred cccccccccccccc---cccCCCCCcccHHHHhhhhhcCCCCCCCCccc
Q 015679 28 DVQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTH 73 (403)
Q Consensus 28 el~CpIClel~~dP---vtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 73 (403)
...|..|...|.-. .-+-.||..||..|....+. ....|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHHH
Confidence 46799998877522 22357999999999876554 34567777543
No 155
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=25.67 E-value=60 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=47.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
|.|.+..++++.+ .|-+.|+-+|..|-+.++.+.+++++..-++..- ..|+++.|
T Consensus 22 m~I~Vk~~~g~~~------~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~G-------------------k~L~d~~t 76 (97)
T 1wyw_B 22 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG-------------------QRIADNHT 76 (97)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETT-------------------EECCTTCC
T ss_pred EEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCChhhEEEEECC-------------------eEcCCCCC
Confidence 6666667888766 3789999999999999999999999887665421 34667778
Q ss_pred hhccccc
Q 015679 379 LAGLRVN 385 (403)
Q Consensus 379 ~~~l~~~ 385 (403)
|+++...
T Consensus 77 l~dy~i~ 83 (97)
T 1wyw_B 77 PKELGME 83 (97)
T ss_dssp HHHHTCC
T ss_pred HHHCCCC
Confidence 8876543
No 156
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=25.66 E-value=22 Score=31.98 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.9
Q ss_pred cccccccccccccccccCCCCCcccHHHHhhhhh---cCCCCCCCCcccc
Q 015679 28 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 74 (403)
Q Consensus 28 el~CpIClel~~dPvtll~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 74 (403)
+..|.+|..-= +=+.+-.|...|+..|+...+. .+...||.|+..-
T Consensus 7 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45599998542 2222345888999999866543 2457899998754
No 157
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.51 E-value=54 Score=27.77 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=27.8
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhh----------hcCCCCCCCCcc
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSM----------RLGNNECPACRT 72 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l----------~~~~~~CP~CR~ 72 (403)
..|.+|.+--.-.. .-.|-..||..||..-+ ..+...|+.|..
T Consensus 58 ~~C~vC~dGG~Llc-Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGGNLIC-CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCCSEEEE-CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCCCeeEe-cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44777765322111 23588999999998642 235679999954
No 158
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.13 E-value=1.5e+02 Score=24.33 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=44.3
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhcc
Q 015679 295 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILE 374 (403)
Q Consensus 295 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (403)
..+.|+++. + ++.+ .|.+.|+.||..|.+.|+.++.++++..-|+.. + ..|+
T Consensus 31 ~~m~I~Vk~--~-g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-G------------------k~L~ 82 (125)
T 1j8c_A 31 KIIKVTVKT--P-KEKE------EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA-G------------------KILK 82 (125)
T ss_dssp CCEEEEEEC--S-SCEE------EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET-T------------------EEES
T ss_pred CcEEEEEEe--C-CeEE------EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC-C------------------EEcC
Confidence 445565554 3 4433 367889999999999999999999998887642 1 2456
Q ss_pred ccchhhcccc
Q 015679 375 GQETLAGLRV 384 (403)
Q Consensus 375 ~~~~~~~l~~ 384 (403)
++.||+++..
T Consensus 83 D~~tL~dygI 92 (125)
T 1j8c_A 83 DQDTLIQHGI 92 (125)
T ss_dssp TTSCGGGTTC
T ss_pred CCCCHHHcCC
Confidence 6777777643
No 159
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.50 E-value=20 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=23.9
Q ss_pred cccccccccccccccccCCC-CCcccHHHHhhhh
Q 015679 28 DVQCPICLGIIKKTRTVMEC-LHRFCRECIDKSM 60 (403)
Q Consensus 28 el~CpIClel~~dPvtll~C-gH~FC~~CI~~~l 60 (403)
.--|-||.+.-. +.++.| +-.||..|..+.-
T Consensus 8 ~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 345999998743 456789 7899999998765
No 160
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.21 E-value=24 Score=27.68 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=22.8
Q ss_pred cccccccccccccc---cccCCCCCcccHHHHhhhh
Q 015679 28 DVQCPICLGIIKKT---RTVMECLHRFCRECIDKSM 60 (403)
Q Consensus 28 el~CpIClel~~dP---vtll~CgH~FC~~CI~~~l 60 (403)
...|.+|...|.-- .-.-.||..||..|....+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 34699998876522 2235699999999976543
No 161
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.07 E-value=36 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=31.1
Q ss_pred cccccccccccccccccccCCCCCcccHHHHhhhhhc---CCCCCCCCccc
Q 015679 26 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTH 73 (403)
Q Consensus 26 ~eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~---~~~~CP~CR~~ 73 (403)
..+..|.+|..-- +=+..-.|--.|+..|+..-+.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456799998642 22222357778999999765542 45689999763
No 162
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.11 E-value=89 Score=25.55 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.+.+-.++++++. +.+.|+-||..|.+-|+..++++++..-++..-. .|+++.|
T Consensus 77 ~~i~Vk~~~g~~~~------~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~-------------------~L~d~~t 131 (152)
T 3b08_A 77 MQIFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-------------------QLEDGRT 131 (152)
T ss_dssp EEEEEEESSSCEEE------EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-------------------ECCTTSB
T ss_pred cceeeeecCCCEEE------EEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCE-------------------ECCCCCC
Q ss_pred hhcccccccCCCCceeehhhhhh
Q 015679 379 LAGLRVNHTSNTDHLILAYRQKQ 401 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~~~~ 401 (403)
|+++ .+.....|.|.++...
T Consensus 132 L~~~---~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 132 LSDY---NIQKESTLHLVLRLRG 151 (152)
T ss_dssp TGGG---TCCTTCEEEEEECCCC
T ss_pred HHHc---CCCCCCEEEEEEecCC
No 163
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.66 E-value=1.1e+02 Score=22.72 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=47.9
Q ss_pred eEEEEeecCCC-CCCCCCCCcc-cccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhcccc
Q 015679 299 VRLMLVSADTQ-CAPSLQQPYL-CCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQ 376 (403)
Q Consensus 299 ~~l~l~~~d~~-~~p~l~~p~l-~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (403)
+.|.+-.++++ ++ .| .+.|+.||..|.+.|+.++.++++..-|+.. + ..|+++
T Consensus 8 m~i~Vk~~~g~~~~------~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~-g------------------k~L~d~ 62 (89)
T 1wy8_A 8 MWIQVRTIDGSKTC------TIEDVSRKATIEELRERVWALFDVRPECQRLFYR-G------------------KQLENG 62 (89)
T ss_dssp EEEEEEETTCSCEE------EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET-T------------------EECCSS
T ss_pred EEEEEEECCCCceE------EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC-C------------------eECCCC
Confidence 33444455663 33 36 3889999999999999999999999887651 1 235667
Q ss_pred chhhcccccccCCCCceeehhh
Q 015679 377 ETLAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 377 ~~~~~l~~~~~~~~~~l~~~y~ 398 (403)
.||+++... ....|.|.++
T Consensus 63 ~tL~~~~i~---~g~~i~l~~~ 81 (89)
T 1wy8_A 63 YTLFDYDVG---LNDIIQLLVR 81 (89)
T ss_dssp SBHHHHTCC---TTCEEEEEEC
T ss_pred CCHHHCCCC---CCCEEEEEEe
Confidence 788876433 2334555544
No 164
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.10 E-value=34 Score=26.78 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=33.6
Q ss_pred cccccccccccccc-c--cc-cccCCCCCcccHHHHhhh-hhcCCCCCCCCccccc
Q 015679 25 IRKDVQCPICLGII-K--KT-RTVMECLHRFCRECIDKS-MRLGNNECPACRTHCA 75 (403)
Q Consensus 25 l~eel~CpIClel~-~--dP-vtll~CgH~FC~~CI~~~-l~~~~~~CP~CR~~~~ 75 (403)
..++..|.||...- . +. +..-.|.-.|+..|+..- +-.+...||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 45678899998753 1 12 222358889999999753 2335678999976443
No 165
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.58 E-value=54 Score=26.15 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=50.8
Q ss_pred eEEEEeecCCCCCCCCCCCccccc-CcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhh---cc
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQ-PSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQI---LE 374 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~-pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ 374 (403)
+.|.+.+.+++. . |.+. |+.+|..|.+-|+..+.++++.--|++.-.... .++.....+. ++
T Consensus 8 M~irvrs~~G~~--~-----v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~-------~k~~~~~~~l~~~l~ 73 (107)
T 1wf9_A 8 TMLRVRSRDGLE--R-----VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLL-------AKSPSDFLAFTDMAD 73 (107)
T ss_dssp EEEEEECSSCEE--E-----EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGT-------CCSHHHHTTCCSSCC
T ss_pred EEEEEECCCCCE--E-----EEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCcccc-------ccCccccccccccCC
Confidence 456666888854 2 3578 999999999999999999888755443221110 1111221232 67
Q ss_pred ccchhhcccccccCCCCc-eeehhh
Q 015679 375 GQETLAGLRVNHTSNTDH-LILAYR 398 (403)
Q Consensus 375 ~~~~~~~l~~~~~~~~~~-l~~~y~ 398 (403)
++.||+++-.. +|+ |+|.|.
T Consensus 74 d~~tL~~~gi~----~G~~L~l~~~ 94 (107)
T 1wf9_A 74 PNLRISSLNLA----HGSMVYLAYE 94 (107)
T ss_dssp TTCBGGGTCCC----TTCEEECCCS
T ss_pred CCCCHHHCCCC----CCCEEEEEeC
Confidence 88899877543 454 445443
No 166
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=21.49 E-value=1.2e+02 Score=21.98 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=34.0
Q ss_pred EEEeecCCCCCCCCCCCccc-ccCcchHHHHHHHhhhccCCcccceEEEE
Q 015679 301 LMLVSADTQCAPSLQQPYLC-CQPSLSVKQLCEYVSLQTPLQAEEVEILM 349 (403)
Q Consensus 301 l~l~~~d~~~~p~l~~p~l~-c~pt~~v~~l~~~va~~~~~~~~e~e~~~ 349 (403)
|.+-.++++.+- .|. +.|+.||..|.+-|+.+++++++..-|+.
T Consensus 5 i~Vk~~~g~~~~-----~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 5 IQVRTMDGRQTH-----TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEETTSSCEE-----EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCEEE-----EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 344456665541 256 88999999999999999999999888765
No 167
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.24 E-value=31 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=22.3
Q ss_pred cccccccccccccc---cccCCCCCcccHHHHhhh
Q 015679 28 DVQCPICLGIIKKT---RTVMECLHRFCRECIDKS 59 (403)
Q Consensus 28 el~CpIClel~~dP---vtll~CgH~FC~~CI~~~ 59 (403)
...|.+|...|.-- .-.-.||..||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 35699998877421 222469999999997543
No 168
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.91 E-value=26 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=30.2
Q ss_pred ccccccccccccc-----c-ccCCCCCcccHHHHhhhh------h----cCCCCCCCCcccc
Q 015679 29 VQCPICLGIIKKT-----R-TVMECLHRFCRECIDKSM------R----LGNNECPACRTHC 74 (403)
Q Consensus 29 l~CpIClel~~dP-----v-tll~CgH~FC~~CI~~~l------~----~~~~~CP~CR~~~ 74 (403)
..||||...+.+. + .+-.|..=|+..|+.-.- . .....||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3599999887754 2 233578888888874321 1 0146899998754
No 169
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.79 E-value=90 Score=24.60 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=49.7
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccch
Q 015679 299 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 378 (403)
Q Consensus 299 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (403)
+.|.+-.++++.+ .|.+.|+.||..|.+.|+.+++++++..-|+.. + ..|+++.|
T Consensus 24 m~I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-G------------------k~L~D~~t 78 (106)
T 1ttn_A 24 CQLRLRLSTGKDL------KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS-G------------------RPLTDKMK 78 (106)
T ss_dssp EEEEEEETTTEEE------EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET-T------------------EECCTTSH
T ss_pred EEEEEEcCCCCEE------EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC-C------------------EECCCCCc
Confidence 4555555666654 268899999999999999999999998877651 1 23566788
Q ss_pred hhcccccccCCCCceeehhh
Q 015679 379 LAGLRVNHTSNTDHLILAYR 398 (403)
Q Consensus 379 ~~~l~~~~~~~~~~l~~~y~ 398 (403)
|+++... ....|.|..+
T Consensus 79 L~~ygI~---~g~ti~lv~~ 95 (106)
T 1ttn_A 79 FEELKIP---KDYVVQVIVS 95 (106)
T ss_dssp HHHCCCS---SSCEEEEECC
T ss_pred HHHcCCC---CCCEEEEEEe
Confidence 8876432 2334555444
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.55 E-value=86 Score=31.34 Aligned_cols=28 Identities=29% Similarity=0.702 Sum_probs=21.9
Q ss_pred CCCCcccHHHHhhhhhc---------CCCCCCCCccc
Q 015679 46 ECLHRFCRECIDKSMRL---------GNNECPACRTH 73 (403)
Q Consensus 46 ~CgH~FC~~CI~~~l~~---------~~~~CP~CR~~ 73 (403)
.|...||..||.+.+.. ....|=.|...
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 68899999999988842 45689999653
No 171
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.16 E-value=68 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=35.7
Q ss_pred cccc-ccccccccccccccccccCCCCCcccHHHHhhhhhcCCCCCCCCcccccC
Q 015679 23 PEIR-KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 76 (403)
Q Consensus 23 ~~l~-eel~CpIClel~~dPvtll~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 76 (403)
..++ +-|.|..|...|..... ..=|..||..|..+.+. ..|..|...+..
T Consensus 27 ~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 27 RHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp CEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred cEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccc---ccccccccccCC
Confidence 3444 34889999988775433 44578899999887664 478899887754
No 172
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=20.07 E-value=92 Score=24.93 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=37.8
Q ss_pred ccccCcchHHHHHHHhhhccCCcccceEEEEEecccCccCCCCCCCCChhhhhhccccchhhcccc
Q 015679 319 LCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRV 384 (403)
Q Consensus 319 l~c~pt~~v~~l~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 384 (403)
|.+.|+.||..|-+.|+..+.++++..-|+.. + ..|+++.||++...
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~-G------------------k~L~D~~tL~~y~i 96 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE-G------------------IFIKDSNSLAYYNM 96 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEET-T------------------EEECTTSBHHHHTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEEC-C------------------EECCCCCCHHHCCC
Confidence 67889999999999999999999999888761 1 23667788887643
No 173
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.07 E-value=69 Score=23.00 Aligned_cols=33 Identities=12% Similarity=0.406 Sum_probs=20.1
Q ss_pred ccccccccccccccccCCCCCcccHHHHhhhhh
Q 015679 29 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 61 (403)
Q Consensus 29 l~CpIClel~~dPvtll~CgH~FC~~CI~~~l~ 61 (403)
|.|..|...|........=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 667777766643222234466777777776665
Done!