BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015680
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
+EL R AA +G+ ++K LI GAD+N +D DGR+PLH A G++++ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N KD G TPL A + GH V LL+
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLI------------------------------- 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
S G D N++D D RTPLH AA G + KLL+ GA V T D G TPLD R GN+
Sbjct: 91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
++KLLE
Sbjct: 151 VVKLLE 156
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ AA +G +K LI GAD+N D DGR+PLH A G++++ LI KG D+N D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASL 282
G TPL A + G++ V LL K+G L
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
+EL R AA +G+ ++K L+ GAD+N +D DG++PLHLA G++++ L+ +G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D N KD G TPL A + GH V LL L
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
S G DPN++D D +TPLH+AA G + KLLL GA T D G TPLD R GN+
Sbjct: 91 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
++KLLE
Sbjct: 151 VVKLLE 156
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G +K L+ GAD N D DG++PLHLA G++++ L+ +G D N D G
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASL 282
TPL A + G++ V LL K+G L
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
+EL R AA +G+ ++K L+ GAD N +D DGR+PLH A G+++I L+ KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D N KD G TPL A + GH + LL L
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
S G DPN++D D RTPLH AA G + KLLL GA T D G TPLD R GN+
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
++KLLE
Sbjct: 151 IVKLLE 156
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G +K L+ GAD N D DGR+PLH A G+++I L+ KG D N D G
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASL 282
TPL A + G++ + LL K+G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
+EL R AA +G+ ++K LI GAD+N +D DGR+PLH A G+++I LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 305
D+N KD G TPL A K GH + LL+ +GA +N D+ + L A G +++K
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
++S G D N+ D D RTPL +A G + KLL + G
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 288
A G +D LI+ G D+N D G TPL A K GH + LL+ +GA +N D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 289 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
+ L A G +++K ++S G D N++D D RTPLH AA EG + KLL+ GA V
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
T D G TPLD R GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%)
Query: 288 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
G L A G+ D +K ++ NG D N+ D D RTPLH AA EG + KLL+ GA V
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLL 372
KD G TPL G+K ++KLL
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G +K LI GAD+N D DGR+PLH A G+++I LI KG D+N D G
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASL 282
TPL A + G++ + LL K+G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
+N KDK G TPL A + GH + +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
D N++D D TPLH+AA EG + ++LL+AGA V +D++G TP D GN+++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 369 IKLLEDA 375
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
+N KDK G TPL A + GH + +L+K GA
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
D N++D D TPLH+AA EG + ++LL+AGA V +D++G TP D G++++
Sbjct: 93 ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 369 IKLLEDA 375
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 99.0 bits (245), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 LNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
+N D + L +A G +++K +L G D N++D + RTPLH+AA G + KLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 340 LEAGA 344
LEAGA
Sbjct: 121 LEAGA 125
Score = 76.3 bits (186), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 54/84 (64%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G L +K L+ AGAD+N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA 280
TPL A + GH V LL++ GA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
L +A G +++K +L G D N++D + RTPLH+AA G + KLLLEAGA V KD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDA 375
+ G TPL G+ ++KLL +A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEA 90
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N KDK G TPL A + GH + +L+K GA
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N++D D TPLH+AA EG + ++LL+AGA V +D++G T D GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 362
++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD----------------- 248
+K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 249 ----------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGASLNVDDAGSF 290
NI+D GNTPL + C + V LLV +GAS+ +++
Sbjct: 149 KGNLKMIHILLYYKASTNIQDTEGNTPL--HLACDEERVEEAKLLVSQGASIYIENKEEK 206
Query: 291 LCIAVARGDSDL-LKRVL 307
+ VA+G L LKR++
Sbjct: 207 TPLQVAKGGLGLILKRMV 224
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 273 SLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
S+L + + D D+ + L A + G +++++ +L GV N +D +PLH+AAS G
Sbjct: 25 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
+ K LL GA V ++ G TPL + +L + ++ HY + M
Sbjct: 85 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 143
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
+L + +L++ D D RT LH A S G + + LL+ G V KD G +PL
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 361 RMCGNKNLIKLL 372
G ++K L
Sbjct: 81 ASAGRDEIVKAL 92
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 362
++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD----------------- 248
+K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 249 ----------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGASLNVDDAGSF 290
NI+D GNTPL + C + V LLV +GAS+ +++
Sbjct: 150 KGNLKMIHILLYYKASTNIQDTEGNTPL--HLACDEERVEEAKLLVSQGASIYIENKEEK 207
Query: 291 LCIAVARGDSDL-LKRVL 307
+ VA+G L LKR++
Sbjct: 208 TPLQVAKGGLGLILKRMV 225
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
+L + +L++ D D RT LH A S G + + LL+ G V KD G +PL
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 361 RMCGNKNLIKLL 372
G ++K L
Sbjct: 82 ASAGRDEIVKAL 93
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N TD+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D +G TPL A GH + +L+K GA
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N++DY+ TPLH+AA +G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G L ++ L++ GAD+N DY+G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
++D+ T +H AA++G M +LL AS +D GNTPL DE R+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 37/140 (26%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD----------------- 248
+K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 249 ----------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGASLNVDDAGSF 290
NI+D GNTPL + C + V LV +GAS+ +++
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDEERVEEAKFLVTQGASIYIENKEEK 206
Query: 291 LCIAVARGDSDLLKRVLSNG 310
+ VA+G L+ + L+ G
Sbjct: 207 TPLQVAKGGLGLILKRLAEG 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D+ + L A + G +++++ +L GV N +D +PLH+AAS G + K LL GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
V ++ G TPL + +L + ++ HY + M
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 290 FLCIAVARGDSDLLK-RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 348
+C G D LK R+L++ D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 349 KDRWGNTPLDEGRMCGNKNLIKLL 372
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKAL 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N TD DG +PLHLA S G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D G TPL A GH + +L+K GA
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AY G L +LK I A L +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
+PL A G D + L+ +GA +N V+ G + L A ++ ++ +L G +P+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
++D+ T +H AA++G M +LL AS +D GNTPL DE R+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 37/149 (24%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------- 248
AA G +K L+ GA +N + +G +PLH A S+ +I + L++ G +
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 249 -------------------------INIKDKFGNTPLLEAIKCGHDGV--TSLLVKEGAS 281
NI+D GNTPL + C + V LV +GAS
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDEERVEEAKFLVTQGAS 197
Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ +++ + VA+G L+ + L+ G
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D+ + L A + G +++++ +L GV N +D +PLH+AAS G + K LL GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
V ++ G TPL + +L + ++ HY + M
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 290 FLCIAVARGDSDLLK-RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 348
+C G D LK R+L++ D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 349 KDRWGNTPLDEGRMCGNKNLIKLL 372
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKAL 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G++PLHLA +G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N DK G+TPL A GH + +L+K GA +N D F
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G L ++ L++ GAD+N TD G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 305
D+N KD G TPL A + GH + +L+K GA +N D+ F L +A RG ++++
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
+L NG D N++D +T ++ G +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
A G +D L+ G D+N +D G TPL A GH + +L+K GA +N D+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
L +A RG ++++ +L NG D N+ D TPLH+AA G + ++LL+ GA V
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N +D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+RD+ TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIK-LLEDAKCTQLSEFH 384
V KD G TPL G+ +++ LL++ S+ H
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
A G +D L+ G D+N D G TPL A GH + +L+K GA +N DD+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
L +A RG ++++ +L NG D N+ D++ TPLH+AA+ G + ++LL+ GA V
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D++G +PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D++ D FG TPL A GH + +L+K
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
NG D N+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AAY G L ++ L++ GAD+N D DG +PLHLA GY +I L++ G D+N +DKFG
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
A G +D L+ G D+N D FG TPL + GH + +L+K A +N D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
+ L +A RG ++++ +L G D N+ DY TPLH+AA +G + ++LL+ GA V
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AAY G L ++ L++ GAD+N DY G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG 288
A G +D L+ G D+N +D +G+TPL A + GH + +L+K GA +N +D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 289 SF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
S L +A RG ++++ +L G D N+ D TPLH+AA G + ++LL+ GA V
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)
Query: 155 GRKVLTNLLEGKESNLRL-----KQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
G+K+L G++ +R+ V ++ T+ G LA R G L ++ L
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTY--GDTPLHLAARV------GHLEIVEVL 66
Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
++ GAD+N D+ G +PLHLA RG+ +I L++ G D+N D G+TPL A GH
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Query: 270 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
+ +L+K GA +N D + I++ G+ DL
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +D + L +A G ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ TPLH+AA G + ++LL+ GA V D G+TPL G+ ++++L
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D G+TPL A GH + +L+K
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
NG D N++D + TPLH+AA+ G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA+ G L ++ L++ GAD+N D +G +PLHLA +RG+ +I L++ G D+N +DKFG
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISINNGNEDLAEILQK 167
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 255
AA + L +K LI+AGA ++ D +G + LHLA +G+ ++ +L+ G +D+N +D
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 313
G TP++ A + H + LL+ +G+ +N+ D +C+ A G D+ + +L+ D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
++ + +PLH+AA E Y L L + V K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 224 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 283
RSPLH A G+ DI L+Q G +I+ + TPL+EA + H L+K GA ++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 284 VDDAGSFLC--IAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
DA C +A +G ++++ +LSNG +D N +D TP+ A + KLLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 377
G+ + +D N L G ++ ++L AKC
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
++AA G + L++AGA+++ D R+PL A + + +LI+ G ++ KD
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVDDAGSF--LCIAVARGDSDLLKRVLSNG 310
G+T L A K GH V L+ G +N D G + + A DL+K +LS G
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
D N RD + LH AA G +A++LL A + + G++PL
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNK 218
L LL K S++ ++ E +I H AA+ G + + L+ A DL+
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHW-------------AAFSGCVDIAEILLAAKCDLHA 172
Query: 219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
+ G SPLH+A D + + + D+ +K+K G TPL
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ LI GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D++ D +G TPL A GH + +L+K GA
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N+ D TPLH+AA EG + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIK 370
L K
Sbjct: 161 LAK 163
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D +G TPL M G+ ++++L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL 99
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D G+TPL A GH + +L+K GA
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N+ D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
+G +E + AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 62 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
+++ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 362 MCGNKNLIKLL 372
G + KLL
Sbjct: 119 AKGKYEICKLL 129
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
+G EA+ L AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 3 MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
+++ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 362 MCGNKNLIKLL 372
G + KLL
Sbjct: 117 AKGKYEICKLL 127
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D G+TPL A GH + +L+K GA
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
D N+ D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 105 ----DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
D+N D G TPL A GH + +L+K
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
NG D N+ D + TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D +G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
+G EA+ L AA GD+ +K L + +N D +GR +PLH A +
Sbjct: 7 LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
+++ +L +G D +++D PLH A S G Y +A+LL++ GA V D W TPL E
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Query: 362 MCGNKNLIKLL 372
G + KLL
Sbjct: 121 AKGKYEICKLL 131
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GAD N D+ GR+PLH+A + G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
+N D G TPL A GH + +L+K GA
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
D N++D TPL++AA G + ++LL+ GA V +D++G T D GN++L
Sbjct: 93 ---DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 369 IKLLE 373
++L+
Sbjct: 150 AEILQ 154
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 155 GRKVLTNLLEGKESNLRL---KQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIR 211
G+K+L G++ +R+ +++ H G+ + AA G L ++ L+R
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGR------TPLHMAAAVGHLEIVEVLLR 56
Query: 212 AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
GAD+N D +G +PLHLA S G+ +I L++ G D+N KD G TPL A GH +
Sbjct: 57 NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 272 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
+L+K GA +N D + I++ G+ DL
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
A G +D L+ G D+N D G+TPL A GH + +L+K GA +N D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
+ L +A G ++++ +L G D N++D TPLH+AA G + ++LL+ GA V
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 305
D+N +D G TPL A GH + +L+K GA +N DA L +A RG ++++
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
+L +G D N++D +T ++ G +A++L
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 155 GRKVLTNLLEGKESNLRLKQVE-SDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAG 213
G+K+L G++ +R+ +D+ H + L L AA+ G ++ L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHL----AAWIGHPEIVEVLLKHG 70
Query: 214 ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 273
AD+N D DG +PLHLA G+ +I L++ G D+N +D +G TPL A GH +
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 274 LLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
+L+K GA +N D + I++ G+ DL
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N DD GS L +A G ++++ +L +G D N+RD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
D TPLH+AA G + ++LL+ GA V +D +G TPL G+ ++++L
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 185 KHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED 237
KH A++ R + AA +G L ++ L++ GAD+N D G +PLHLA RG+ +
Sbjct: 68 KHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 277
I L++ G D+N +DKFG T +I G++ + +L K
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G +K L+ A+ N G +PLH+A G+ + L L++K K G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
TPL A K G V LL++ A N L +AV + D++K +L G P+
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
S ++ TPLH+AA + +A+ LL+ G S + G TPL G+ ++ LL
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 375 AKC-------TQLSEFHYCSQ-GMIGIAENLL 398
+ + L+ H +Q G + +A+ L+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A++ G L +K L++ GA N ++ +PLH+A G+ ++ +L+Q +N K K
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
TPL A + GH + LL++ A+ N+ L IA G + + +L
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
TPLHVAA G +A+LLLE A + G TPL N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA + + L++ G N G +PLHLA G+ ++ L+ K + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR--GDSDLLKRVLSNGVDPN 314
TPL + GH V +L+K G ++ + + VA G+ L+K +L + D N
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 364
++ +PLH AA +G + LLL+ GAS G TPL + G
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
+PLH+A+ G+ I L+Q+G N+ + TPL A + GH V L++ A +N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 285 ---DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
DD C A G ++++K +L N +PN TPLH+AA EG LLE
Sbjct: 76 KAKDDQTPLHC-AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
AS + G TPL G + +LL
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A +H +L +K L+ G + ++G +PLH+A + ++ L+Q G N + G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
TPL A + GH + +LL+ + A+ N+ + L + G + ++ +GV +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ TPLHVA+ G + K LL+ A V K + G +PL + G+ +++ LL
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 258 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNS 315
TPL A GH + L++ GAS NV + + L +A G +++ K +L N N+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
+ D +TPLH AA G M KLLLE A+ G+TPL G+ + L +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 376 KCTQ-------LSEFHYCSQ-GMIGIAENLL 398
+ +Q + H ++ G + +AE LL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A+++G++ +K L++ AD+N G SPLH A +G+ DI L++ G N G
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIA 294
TPL A + G+ VT +L V D SF+ ++
Sbjct: 378 TTPLAIAKRLGYISVTDVLKV------VTDETSFVLVS 409
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.3 bits (186), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
D N++D + RTPLH+AA G + KLLLE
Sbjct: 60 ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 342 AGA 344
AGA
Sbjct: 90 AGA 92
Score = 75.9 bits (185), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 54/84 (64%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA +G L +K L+ AGAD+N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA 280
TPL A + GH V LL++ GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
L +A G +++K +L G D N++D + RTPLH+AA G + KLLLEAGA V KD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDA 375
+ G TPL G+ ++KLL +A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 321 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
RTPLH+AA G + KLLLEAGA V KD+ G TPL G+ ++KLL +A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+RD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N +D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V +D WG TPL G+ ++++L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GAD+N TD +G +PLHLA + G +I L++ G D
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 306
+N D G TPL A GH + +L+K GA +N D + L +A G ++++ +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
L +G D N++D T ++ ++G +A++L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA G D +L+ GA +N DD G + L +A A G ++++ +L NG D N+ D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
TPLH+AA +G + ++LL+ GA V DR G TPL + G ++++L
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A A G D ++ +++NG D N+ D + TPLH+AA+ G + ++LL+ GA
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D G TPL G+ ++++L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVL 91
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 75.9 bits (185), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
++AA +G ++K L+ GAD+N DG +PLHLA G+ +I L+ KG D+N +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
K GNTP A K GH + LL +GA +N GS
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
DG +PLH A G+ + L+ KG D+N + K GNTPL A K GH
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
++++K +L+ G D N+R D TP H+A G + + KLL
Sbjct: 55 ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 342 AGASVFTKDRWGNT 355
GA V + WG++
Sbjct: 97 KGADVNARS-WGSS 109
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D + L A G ++ +K++LS G D N+R D TPLH+AA G + KLLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
V + + GNTP + G+ ++KLL DAK
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL-DAK 97
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D WG TPL G+ ++++L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +DDAG + L +A RG ++++ +L +G D N+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + A G +++ L+ GAD+N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N D +G TPL A GH + +L++ GA +N D + I++ G+ DL
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D WG TPL G+ ++++L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 42 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 384 H 384
H
Sbjct: 222 H 222
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
N D T LH+AA AK LLEA A +D G TPL + + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 374 DAKCTQL 380
+ T L
Sbjct: 79 RNRATDL 85
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 131
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N +D FG TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +D + L +A G ++++ +L G D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V +D +G TPL + G+ ++++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVL 99
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 75 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 384 H 384
H
Sbjct: 255 H 255
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 246 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 305
G+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 GMDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS----- 49
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
L N D T LH+AA AK LLEA A +D G TPL
Sbjct: 50 -LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 103
Query: 366 KNLIKLLEDAKCTQL 380
+ + ++L + T L
Sbjct: 104 QGVFQILIRNRATDL 118
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 164
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
F A +GDL ++K + G D+N+T GR PLH A G +I FL+ KG DIN D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
K TPLL A+ GH LL+ +GA V
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 353
A+ GD D +K ++ G D N R PLH AA G + + LL GA + D+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 354 NTPLDEGRMCGNKNLIKLL 372
TPL G+ + +KLL
Sbjct: 69 ITPLLSAVYEGHVSCVKLL 87
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS 300
+ KG D+N + G PL A CG + L+ +GA +N D L AV G
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 81
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
+K +LS G D + D T L ++ +
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTALEATDNQAI 113
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
G ++L+ +L G D N+ D H TPL A EG KLLL GA K G T L
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Query: 358 D 358
+
Sbjct: 106 E 106
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L L+ L+ GAD+N D +PL A G+ L+ KG D +K G
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Query: 257 NTPL 260
T L
Sbjct: 102 LTAL 105
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV 306
+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS------ 48
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
L N D T LH+AA AK LLEA A +D G TPL +
Sbjct: 49 LHNQTDRTGE-----TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 367 NLIKLLEDAKCTQL 380
+ ++L + T L
Sbjct: 104 GVFQILIRNRATDL 117
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 163
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N D L +A A G ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
TPLH+AA G +A++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PL+LAT+ G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N D G TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A HG L ++ L++ GAD+N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N++D TPL++A + G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D G TPL G+ + ++L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVL 99
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV 306
+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 MDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS------ 48
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
L N D T LH+AA+ AK LLEA A +D G TPL +
Sbjct: 49 LHNQTDRTGA-----TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 367 NLIKLLEDAKCTQL 380
+ ++L + T L
Sbjct: 104 GVFQILIRNRATDL 117
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
+R + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARL---AVEG---MLEDLINSHADVNAVDDLGKSALHW 163
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
F A +GDL ++K + G D+N+T GR PLH A G +I FL+ KG DIN
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
DK TPLL A+ GH LL+ +GA V
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 353
A+ GD D +K ++ G D N R PLH AA G + + LL GA + D+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 354 NTPLDEGRMCGNKNLIKLL 372
TPL G+ + +KLL
Sbjct: 74 ITPLLSAVYEGHVSCVKLL 92
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS 300
+ KG D+N + G PL A CG + L+ +GA +N D L AV G
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
+K +LS G D + D T ++ +
Sbjct: 87 SCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
G ++L+ +L G D N+ D H TPL A EG KLLL GA K G T
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Query: 358 D 358
+
Sbjct: 111 E 111
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L L+ L+ GAD+N D +PL A G+ L+ KG D +K G
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 257 NT 258
T
Sbjct: 107 LT 108
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL----- 260
+K L+ GA++N+ D +G PLH A S GY DI +LI +G + + G+TPL
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Query: 261 -----------------LEAIKCGHDGVTSLLVKEG-ASLNVDD------AGSFLCIAVA 296
+EA + + + ++ S +++D G+ L +A A
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
+G +++LK ++ D N +DYD TPLH AA G ++L+E + ++ G T
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 357 LD 358
D
Sbjct: 269 FD 270
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 35/216 (16%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
F +A GD ++ L+ GAD+N + DG + LH A D+ FL++ G +IN D
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF---------------------- 290
G PL A CG+ + L+ +GA + V+ G
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 291 LCIAVARGDSDLL-----KRVLSNGVDPNSRDYDHR----TPLHVAASEGLYLMAKLLLE 341
+ I AR + + + ++ L++G + D H T LHVAA++G + KLL++
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSG---HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 377
A V KD G TPL G + ++L + C
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G+ A + GD++ + R+L G D N + D T LH A + M K L+E GA+
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 346 VFTKDRWGNTPLDEGRMCG 364
+ D G PL CG
Sbjct: 99 INQPDNEGWIPLHAAASCG 117
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N++D D TPLH+AA EG + ++LL+AGA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
V +D++G T D GN++L ++L+ A
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GAD+N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVK 277
+N +DKFG T +I G++ + +L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--A 287
A G +D L+ G D+N KDK G TPL A + GH + +L+K GA +N D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 288 GSFLCIAVARGDSDL 302
+ I++ G+ DL
Sbjct: 69 KTAFDISIDNGNEDL 83
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
N D R+PL +A G E+ L++ + KD G+T L+ A+K G+ L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 277 KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
+G+++N D + L ++ G S++ +L +G + N R+ + TPL VA+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
+ K LLE GA + +D G T R+ G + +IK+ + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ G+++N D+ G++PL + GY +++ FL++ G ++N ++ G TPL+ A K G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
+ L++ GA ++ D A AR
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ GA++N + +G +PL +A+ G +I L++ G DI+ +D G T A G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 269 DGVTSLLVK 277
V + +
Sbjct: 180 QEVIKIFTE 188
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 265
K L+ A AD D GR+PLH A S + + + L + D++ + G TPL+ A +
Sbjct: 39 KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
+G+ L+ A +N VDD G S L A A + D +L NG + + ++ TP
Sbjct: 99 LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
N D T LH+AA AK LLEA A +D G TPL + + ++L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 374 DAKCTQL 380
+ T L
Sbjct: 76 RNRATDL 82
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
LR + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 75 LRNRATDLDARMHDGTTPLILAARL---ALEG---MLEDLINSHADVNAVDDLGKSALHW 128
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
LV G+ + D G L A G D ++ +++NG D ++D + TPLH+AA G
Sbjct: 13 LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+ KLLLEAGA V +D++G T D GN++L ++L+
Sbjct: 72 VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 241
H+G ++L + AA G +++ L+ GAD+ D +G +PLHLA G+ ++
Sbjct: 19 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
L++ G D+ +DKFG T +I G++ + +L
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
G+DL K L A G +D L+ G D+ KDK G+TPL A + GH V
Sbjct: 21 GSDLGKK-------LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 73
Query: 273 SLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
LL++ GA + D + I++ G+ DL
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 327 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +D + L +A ++++ +L +G D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
D TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N D G+TPL A GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 155 GRKVLTNLLEGKESNLRLKQVE-SDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAG 213
G+K+L G++ +R+ +D+ + K L L AA + L ++ L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 214 ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 273
AD+N D DG +PLHLA G+ +I L++ G D+N +DKFG T +I G++ +
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 274 LLVK 277
+L K
Sbjct: 131 ILQK 134
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D G+TPL + G+ ++++L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVL 99
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L GAD+N DY G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N G TPL A H + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L GA +N +D + L +A G ++++ +L NG D N+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
RTPLH+AA + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G L ++ L++ GAD+N T GR+PLHLA + +I L++ G D+N +DKFG
Sbjct: 54 AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ + +NG D N+ DY TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 346 VFTKDRWGNTPL 357
V G TPL
Sbjct: 73 VNATGNTGRTPL 84
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ AA HG L+ LI G +N D SPLH A G+ L++ G +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 312
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ + TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 373 ED 374
D
Sbjct: 186 MD 187
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 283
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 284 -VDDAGSFLCIAVARGDSDLLKRVLSNG--VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 121
Query: 341 EAGASVFTKDRWGNTPL-----DEGRMCGNK 366
G ++ K TPL ++ R C K
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKK 152
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 246
E++LA + AA G + + LI G +++ +PL+LA L++ G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 287
D+N + K ++PL + + + LL+ GA +A
Sbjct: 158 ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
L+ AGAD N D GR+PLH A + + + L + ++N + G TPL+ A +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 268 HDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 325
+G+ L+ A +N D++G + L A A +++ + +L + + +++D TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 326 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
+AA EG Y +K LL+ A+ D P D + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 140 DKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAY 199
D T + D V LL + +NL + H G LA R A
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNAR-------MHDGTTPLILAARL---AI 130
Query: 200 HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 259
G ++ LI A AD+N D G++ LH A + + L+ + + +D TP
Sbjct: 131 EG---MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP 187
Query: 260 LLEAIKCG 267
L A + G
Sbjct: 188 LFLAAREG 195
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 62.0 bits (149), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D ++D + TPLH+AA G + KLLLEAGA
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
V +D++G T D GN++L ++L+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 241
H+G ++L + AA G +++ L+ GAD+ D +G +PLHLA G+ ++
Sbjct: 1 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 57
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
L++ G D+N +DKFG T +I G++ + +L
Sbjct: 58 LLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
G+DL K L A G +D L+ G D+ KDK G+TPL A + GH V
Sbjct: 3 GSDLGKK-------LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 55
Query: 273 SLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
LL++ GA +N D + I++ G+ DL
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDISIDNGNEDL 87
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 327 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 186 HEAELALRFNSAAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 243
H A + R + Y Y KG I + G DLN T PLH AT +G+ + + L+
Sbjct: 47 HWAAINNRIDLVKY----YISKGAIVDQLGGDLNST------PLHWATRQGHLSMVVQLM 96
Query: 244 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS- 300
+ G D ++ D G + + A + GH + + L+ +G +++ D L A R S
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 301 DLLKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
D + +L+ V N D H+ T LH A G + LLLEAGA+V ++ G + LD
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 360 GRMCGNKNLIKLLEDAK 376
+ N +I L++A+
Sbjct: 217 AKQRKNVWMINHLQEAR 233
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 212 AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
+G +N T DG SPLH+A G D+ L++ G + ++ PL A + GH V
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 272 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
L+ A N D + L A + G +L+ +L +G N+ + T LH A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
E + +LLL GASV ++ T +D N +++LL+
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 119 LCNIPQ--PYTVRICELSRL---LRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLK 173
LC P+ P R+ ++ + + Q +S L + GR L LL +N +
Sbjct: 56 LCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR 115
Query: 174 QVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSR 233
+ + H+ A G +K L+ + A NK D G +PL A S
Sbjct: 116 NADQAVPLHL-------------ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162
Query: 234 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI 293
G+ ++ L+Q G IN + GNT L EA+ H V LL+ GAS+ V + +
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Query: 294 AVARGDSDLLK 304
A +S +++
Sbjct: 223 DCAEQNSKIME 233
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 362
L +V ++G+ N D +PLHVAA G + LLL+ GA+ ++ PL
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 363 CGNKNLIKLLEDA 375
G+ ++K L D+
Sbjct: 129 QGHFQVVKCLLDS 141
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 215 DLNKTDYDGR--SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
++N DGR +PLHLA I L+Q G D++ KDK G PL A GH VT
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 273 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
LL+K GA +N D F L A ++ ++ +LS+G DP
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 189 ELALRFNSAAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
E AL A+ H Q+ L+ R GA++N+ + D +PLH+A R + D+ L + G
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
+N D G T L A GH LL+ G+ ++ F A+ ++ ++++L
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF---TAAQMGNEAVQQIL 328
Query: 308 SNGVDPNSRDYDHR 321
S + D D+R
Sbjct: 329 SESTPMRTSDVDYR 342
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 254 KFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNG 310
++ LLEA + G++ + +LL + + D + L +A +++ +L +G
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
D +++D PLH A S G Y + +LLL+ GA V D W TPL E +KN ++
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138
Query: 371 L 371
+
Sbjct: 139 V 139
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 101/251 (40%), Gaps = 32/251 (12%)
Query: 151 YFCDGRKVLTNLLEGKESNLRLKQV--ESDITFHIGKHEAELALRFNSAAY-HGDLYQLK 207
+ DGRK L + +R+ Q+ + H K + L N+ +Y H ++ +L
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSYGHYEVTEL- 109
Query: 208 GLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-------TP- 259
L++ GA +N D +PLH A S+ ++ L+ G D + + G TP
Sbjct: 110 -LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Query: 260 LLEAIKCGHDGVTSLLVKEGASL------------NVDDAGSF---LCIAVAR---GDSD 301
L E + G + L A L N S L AVA
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
+ + +L G + N ++ D TPLHVAA + ++L + GA + D G T L
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 362 MCGNKNLIKLL 372
+ G+ +LL
Sbjct: 289 LAGHLQTCRLL 299
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 294 AVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 352
A G+ + L +L+ V+ ++ D TPLH+AA + +LLL+ GA V KD+
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 353 GNTPLDEGRMCGNKNLIKLL 372
G PL G+ + +LL
Sbjct: 91 GLVPLHNACSYGHYEVTELL 110
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 271 VTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
V LL+++GA++N D + L +A R +D+++ + +G N+ D +T LH AA
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 329 SEGLYLMAKLLLEAGASV-------FTKDRWGNTPLDE 359
G +LLL G+ FT + GN + +
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQ 326
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 171 RLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
++K++ D T+ + + + E N A ++ D+ K LI GAD+N + SP A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 231 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
++G +I ++++ D+N +++G L+ A + GH LL+++G ++D
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 290 F------LCIAVARGDS---DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
F + + G+ D++K ++ NG D + +D RT + A +G ++K+L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 341 E 341
+
Sbjct: 199 Q 199
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
+++ D +G +PL++A +I LI +G DIN+++ ++P L A G + + +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 276 VKEGA-SLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA---- 328
+K LN + G+ L A +G D +K +L +G D D + A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEA 147
Query: 329 ---SEGLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
EG L + KLL+E GA KD G T +D G + K+L
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 317
LLEA + G D +L+ GA +N +D L +A ++++ +L NG D N+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
TPLH+ A G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
++L + AA G +++ L+ GAD+N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
D+N D G TPL GH + +L+K GA +N D + I++ G+ DL
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA + L ++ L++ GAD+N D G +PLHL G+ +I L++ G D+N +DKFG
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
D G L A G D ++ +++NG D N+ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
V D G TPL M G+ ++++L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVL 99
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
+L + AA G +++ L+ GA TD+ G SPLHLA G+ T L++ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
+ + K TPL A GH + +L+K
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLK------------------------------- 88
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
+G D N++D T LH A + +LL++ GA V T+ ++ T D GN++L
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 369 IKLLE 373
++L+
Sbjct: 149 AEILQ 153
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 298
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 367 NLIKLLE 373
++ +++E
Sbjct: 165 SVQQVIE 171
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 250
+L + A G++ L I +N TD +G +PL A + G + FL+Q G D
Sbjct: 20 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 308
+ K + L A G+ + +L+ G +N D G+ L AV +K +L
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 309 NGVDP 313
+G DP
Sbjct: 140 SGADP 144
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
+K L+ G D+N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 160
Query: 266 CGHDGVTSLL 275
G+ V ++
Sbjct: 161 LGYRSVQQVI 170
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 298
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 367 NLIKLLE 373
++ +++E
Sbjct: 147 SVQQVIE 153
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
+K L+ G D+N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 142
Query: 266 CGHDGVTSLL 275
G+ V ++
Sbjct: 143 LGYRSVQQVI 152
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA HG + ++ L++ GAD S L LA S+GY DI L+ GVD+N D G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 298
TPLL A+ H +L++ GA ++ D + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
IN D+ G TPL+ A G V L++ GA + G S L +A ++G +D++K +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
L GVD N D++ TPL A K+LLE+GA + G +D G +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 367 NLIKLLE 373
++ +++E
Sbjct: 149 SVQQVIE 155
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
+K L+ G D+N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 266 CGHDGVTSLL 275
G+ V ++
Sbjct: 145 LGYRSVQQVI 154
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA N D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 269 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
V S L E + L+ DA L +A+ RG DL+ + + V P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-A 287
A +RG +++ L ++ V + ++FG T L + + G + L+K+GAS NV D +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 288 GSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
G+ AR G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 132
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D G TPL+ G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 136
Query: 254 KFGNTPLLEAIKCGHDGVTSLL 275
G TPL A++ G + +L
Sbjct: 137 ARGLTPLELALQRGAQDLVDIL 158
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ AA HG L+ LI G +N D SPLH A G+ L++ G +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 312
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ + TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 373 ED 374
D
Sbjct: 242 MD 243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 283
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 284 -VDDAGSFLCIAVARGDSDLLKRVLSNG--VDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 177
Query: 341 EAGASVFTKDRWGNTPL-----DEGRMCGNKNLIKLLE 373
G ++ K TPL ++ R C + KLLE
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRAC----VKKLLE 211
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 246
E++LA + AA G + + LI G +++ +PL+LA L++ G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 287
D+N + K ++PL ++ + + LL+ GA +A
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
+K L+ +GAD+N+ SPLH E++ L+ G D K+ G P +E +
Sbjct: 206 VKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP-VELVP 263
Query: 266 CGHDGVTSLLVKEGASL 282
L +EGASL
Sbjct: 264 PESPLAQLFLEREGASL 280
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 206 LKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPL 260
L+ L+ + A DL +YDG + LH+A + ++ L+++G DI+ D K G +PL
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 261 LEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 318
+ A++ + LL++ GA++N S L A RG L++ ++ +G D + ++
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 319 DHRTPLHVAASE 330
+ TPL VA S
Sbjct: 215 HNDTPLMVARSR 226
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 218 KTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
+ D DG +PLH+A +G + + LF Q G +++I + TPL A+ V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 273 SLLVKEGAS-LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS-----RDYDHRTPLHV 326
LLV GAS + +D G S R L + P + R+YD T LHV
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 327 AASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLL 372
A + +LLLE GA + D + G +PL + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A + L ++ L++ GA++N Y G S LH A+ RG + L++ G D ++K+
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 257 NTPLLEA 263
+TPL+ A
Sbjct: 217 DTPLMVA 223
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA N D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 269 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
V S L E + L+ DA L +A+ RG DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-A 287
A +RG +++ L ++ V + ++FG T L + + G + L+K+GAS NV D +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 288 GSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
G+ AR G D LK ++ +G D N D P+H+A EG + L A + +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 126
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D G TPL+ G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 195 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDA 131
Query: 255 FGNTPLLEAIKCGHDGVTSLL 275
G TPL A++ G + +L
Sbjct: 132 RGLTPLELALQRGAQDLVDIL 152
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 295
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L +A
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
+ G D+++++L D N+ + PLH A G +A+ L+ GA V +++G
Sbjct: 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 356 PLDEGR 361
P+D+ +
Sbjct: 141 PVDKAK 146
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLN 217
+ T EG +RL ++ + G L + A G ++ LI GA +N
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW--ACREGRSAVVEMLIMRGARIN 66
Query: 218 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 277
+ +PLHLA S G+ DI L+Q DIN ++ GN PL A G D V LV
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 278 EGASLNV 284
GA +++
Sbjct: 127 NGALVSI 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA HG ++ L++ AD+N + G PLH A G + + L+ G ++I +K+G
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 257 NTPLLEA 263
P+ +A
Sbjct: 139 EMPVDKA 145
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI-K 370
D N D +PLH A EG + ++L+ GA + +R +TPL G+++++ K
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 371 LLE-DAKCTQLSE-----FHY-CSQGMIGIAENLL----LLPLC 403
LL+ A ++E HY C G +AE+L+ L+ +C
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 295
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L +A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
+ G D+++++L D N+ + PLH A G +A+ L+ GA V +++G
Sbjct: 76 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 356 PLDEGR 361
P+D+ +
Sbjct: 136 PVDKAK 141
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
LI GA +N + +PLHLA S G+ DI L+Q DIN ++ GN PL A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Query: 269 DGVTSLLVKEGASLNV 284
D V LV GA +++
Sbjct: 113 DQVAEDLVANGALVSI 128
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA HG ++ L++ AD+N + G PLH A G + + L+ G ++I +K+G
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 257 NTPLLEA 263
P+ +A
Sbjct: 134 EMPVDKA 140
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI-K 370
D N D +PLH A EG + ++L+ GA + +R +TPL G+++++ K
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 371 LLE-DAKCTQLSE-----FHY-CSQGMIGIAENLL----LLPLC 403
LL+ A ++E HY C G +AE+L+ L+ +C
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A+ G++ ++ L+ GAD + + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 298
TPLL A++ H L+ GA L + D+G + + +AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
+L + A G+L QLK +R G +L NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
+I L KE S L +A G +D++ +L
Sbjct: 63 HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
VD N D++ TPL A + LL GA + T+ G TP+D G + +
Sbjct: 92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 370 KLLED 374
+++E+
Sbjct: 152 QVIEN 156
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 241
HI E E AL S + D+ L L+ D+N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA N D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
V S L E + L+ DA + +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 288
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 289 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
+ A G D LK ++ +G D N+ D P+H+A EG + L + +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D G TPL+ R G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRD 138
Query: 254 KFGNTPL 260
G TPL
Sbjct: 139 ASGLTPL 145
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA N D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
V S L E + L+ DA + +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 288
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 289 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
+ A G D LK ++ +G D N+ D P+H+A EG + L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+D G TPL+ R G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 195 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
+ AA G L LK L+ GAD+N D G P+HLA G+ + FL + D++ +D
Sbjct: 79 HDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRDA 137
Query: 255 FGNTPL 260
G TPL
Sbjct: 138 SGLTPL 143
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 278
T++ G + LH+A+ +G +L+Q G D N+KD G TPL EA GH V LL++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 279 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 338
A + N+ Y + +PLH AA G + KL
Sbjct: 66 KALV-------------------------------NTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 339 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 381
LL GAS + +G P+D K+L+ L E + + S
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ 244
H E L A+ GD+ ++ L++ G+D N D+ G +PLH A + G+ + L+Q
Sbjct: 7 NHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
+N ++PL +A K GH + LL+ GAS N
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ A HG L ++ L++ A +N T Y SPLH A G+ DI L+ G N +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 254 KFGNTPL 260
FG P+
Sbjct: 107 IFGLRPV 113
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
A+ G++ ++ L+ GAD + + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 298
TPLL A+ H L+ GA L + D+G + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
+L + A G+L QLK +R G +L NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
+I L KE S L +A G +D++ +L
Sbjct: 63 HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
VD N D++ TPL A + LL GA + T+ G TP+D G + +
Sbjct: 92 DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 370 KLLED 374
+++E+
Sbjct: 152 QVIEN 156
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLF 241
HI E E AL S + D+ L L+ D+N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
+LL
Sbjct: 157 ELL 159
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 215 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 274
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 275 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 303
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
+LL
Sbjct: 157 ELL 159
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 215 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 274
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 275 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 303
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
+ A + ++++ L+ + L + D DGR PLH + S +IT FL+ K ++N+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
D DD+G + IA + G+ +++K + +
Sbjct: 66 DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
P+ ++ T LH+A + + +++ L+E GASV KD++ PL G+ LI
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
+LL
Sbjct: 157 ELL 159
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 215 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 274
DLNK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 275 LVKEGAS-LNVDDAGS----FLCIAVARGDSDLL 303
L G S +N D F +A GD+ +L
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 178 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
DI + +H A+ LR F AA G + LK + GAD+N+ D+ G + A
Sbjct: 53 DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112
Query: 231 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 279
G FL ++G ++N++ K G T L++A + GH V +L+ E G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 280 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 332
A +N D+ G + + ++ DSD + +L +G D N R +TPL +A + L
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
L+ +LL + + D G T L
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 197 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
A + D+ ++ L+ GA++N + + G +PLH A EDI L++ G D ++ K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 313
G TP L A G + L + +GA +N D F A G LK + G +
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 314 NSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 357
N R T L AA +G + K+LL E GA V D G L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 41/209 (19%)
Query: 144 FTSILEIYFCDGRKVLTNLLE-GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD 202
FT+ +E K L L + G NLR K E G A AA G
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-----ATALMDAAEKGH 160
Query: 203 LYQLKGLI-RAGADLNKTDYDGRSPL-HLATSRGYED---ITLFLIQKGVDINIKDKFGN 257
+ LK L+ GAD+N D GR+ L H S D IT L+ G D+N++ + G
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 258 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
TPL+ A++ H G+ L+++ ++ N D
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQ------------------------------EHIEINDTD 250
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASV 346
D +T L +A L +A+LL + GAS
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 267
L+ GAD+N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Query: 268 HDGVTSLLVKEGASLNVDD 286
+ LL K GAS + D
Sbjct: 265 LKKIAELLCKRGASTDCGD 283
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
N L++A++ + L++ GA++N ++ G + L AV D+++ +L +G DP
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 269 DGVTSLL 275
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 366 KNLIKLLEDAK 376
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 303 LKRVLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
+ L++G D N + D+ TPL A + L + LL+ GA+V D G PL
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 361 RMCGNKNLIKLL 372
+ G+ L L
Sbjct: 276 TILGHTGLACLF 287
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 269 DGVTSLL 275
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 366 KNLIKLLEDAKCTQLSEFHYCSQGMIG 392
+++ LL AK + +QG G
Sbjct: 314 ADIVTLLRLAKMREAE----AAQGQAG 336
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 303 LKRVLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
+ L++G D N + D+ TPL A + L + LL+ GA+V D G PL
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 361 RMCGNKNLIKLL 372
+ G+ L L
Sbjct: 276 TILGHTGLACLF 287
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
AL F ++ + L + + GAD+N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
+N D G PL A GH G+ L +K GA L D+ L IA+ ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L++ GA++N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 269 DGVTSLL 275
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
+L NG + N D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 366 KNLIKLLEDAK 376
+++ LL AK
Sbjct: 314 ADIVTLLRLAK 324
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 303 LKRVLSNGVDPN--SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
+ L++G D N + D+ TPL A + L + LL+ GA+V D G PL
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 361 RMCGNKNLIKLL 372
+ G+ L L
Sbjct: 276 TILGHTGLACLF 287
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 178 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
DI + +H A+ LR F AA G + LK + GAD+N+ D+ G + A
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 231 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 279
G FL ++G ++N++ K G T L++A + GH V +L+ E G
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 280 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 332
A +N D+ G + + ++ DSD + +L +G D N R +TPL +A + L
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
L+ +LL + + D G T L
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTAL 277
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 197 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
A + D+ ++ L+ GA++N + + G +PLH A EDI L++ G D ++ K
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 313
G TP + A G + L + +GA +N D F A G LK + G +
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 314 NSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 357
N R T L AA +G + K+LL E GA V D G L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 144 FTSILEIYFCDGRKVLTNLLE-GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD 202
FT+ +E K L L + G NLR K E G A AA G
Sbjct: 126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-----ATALMDAAEKGH 180
Query: 203 LYQLKGLI-RAGADLNKTDYDGRSPL-HLATSRGYED---ITLFLIQKGVDINIKDKFGN 257
+ LK L+ GAD+N D GR+ L H S D IT L+ G D+N++ + G
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 258 TPLLEAIKCGHDG-VTSLLVKEGASLNVDDAGSFLCIAVA 296
TPL+ A++ H G V LL +E +N D+ + +A
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 267
L+ GAD+N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 268 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVD----PNSRDY 318
+ LL K GAS D G + A D L+K +LS+G P + D+
Sbjct: 285 LKKIAELLCKRGAST---DCGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDW 336
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
N L++A++ + L++ GA++N ++ G + L AV D+++ +L +G DP
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 160 TNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT 219
+L GK +NLR K I + LAL +S+ G+ ++ +I D +
Sbjct: 9 VSLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLP 66
Query: 220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 279
+ +G + LH A G+ +I FL+Q GV++N D G TPL A C + V LV+ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 280 ASL 282
A++
Sbjct: 127 AAV 129
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 281 SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
SL D+ + L AV G ++++K ++ GV+ N+ D D TPLH AAS + K L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL 399
E+GA+VF + ++ D KC ++ E + CSQ + G+ E + +
Sbjct: 124 ESGAAVFAM---------------TYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 400 L 400
+
Sbjct: 168 M 168
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 160 TNLLEGKESNLRLKQVESDITFH---IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADL 216
+L GK +NLR + S+ H + + LAL +S+ G+ ++ +I D
Sbjct: 7 VSLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDP 63
Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
+ + +G + LH A G+ +I FL+Q GV++N D G TPL A C + V LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 277 KEGASL 282
+ GA++
Sbjct: 124 ESGAAV 129
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVK-----EGASLNVDDAGSFLCIAVARGDSDLLKR 305
++ KF PL + +G L+ + + SL D+ + L AV G ++++K
Sbjct: 29 MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
++ GV+ N+ D D TPLH AAS + K L+E+GA+VF
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---------------T 133
Query: 366 KNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLLL 400
+ ++ D KC ++ E + CSQ + G+ E + ++
Sbjct: 134 YSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGIM 168
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L N D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
++
Sbjct: 156 MQ 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 269 DGVTSLLVKEGAS 281
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 252
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGD 299
L + D++ + G TPL+ A + +G+ L+ A +N VDD G S L A A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
D +L NG + + ++ TPL +AA EG Y AK+LL+ A+ D P D
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 360 GRMCGNKNLIKLLED 374
+ + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 229
LR + + D H G LA R A G L+ LI + AD+N D G+S LH
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARL---ALEG---MLEDLINSHADVNAVDDLGKSALHW 54
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 55 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 196 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
SAA GDL QL L++ ++N + GR+ L + G +I L+ +G + ++KD+
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
GN + +A + G FL D L+ +L D N
Sbjct: 70 GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L++
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 252
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 255
A HG + +K L+ AD+N D DG + L A G+++I L L DI++ D+
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 256 GNTPLLEAIKCGHDGVTSLL 275
G+T L+ A+ G + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 202 DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 261
D+ + L R G K G++ L LA S G D+ L+ D+N++D G+T L+
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 262 EAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCIAVARGDSDLLKRVLS 308
A + GH + LL+ + SL D + L +A+ G S++ + S
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 50/221 (22%)
Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
+++ K I AGAD+N D D +PL LA + +L + G D I +K + L +
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 263 AIKC-------------------------------------GHDGVTS--LLVKEGASLN 283
A G D V S LLV++GA ++
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 284 VDDAG----------SFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGL 332
D A + L A + ++K ++ G + + +D D +TP+ +AA EG
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
+ L++ GASV D +T + + N++ + +
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
++
Sbjct: 156 MQ 157
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ GA+ + D G + +H A G D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 269 DGVTSLLVKEGAS 281
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 252
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
+P+ +D +H AA G + LLE A V +D GN PL
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
++
Sbjct: 156 MQ 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 269 DGVTSLLVKEGAS 281
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIK 252
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
+P+ +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 371 LL 372
L
Sbjct: 121 FL 122
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
FG T L + +K G+ + L+ GA+ ++ D F I A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
N D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
++
Sbjct: 156 MQ 157
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
L+ GA+ + D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 269 DGVTSLLVKEGAS 281
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 252
+ AA G L L+ L+ AD+N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
+ + +GN A + + +TSLL + G + G+ ++ +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
+P+ +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 371 LL 372
L
Sbjct: 121 FL 122
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 76 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+S+L + +VR SRL + +F +LE Y
Sbjct: 136 M-----KLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLEEY 182
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
L T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SL
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 275 LVKEGASLN 283
L+K GA +N
Sbjct: 167 LLKCGADVN 175
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
Q+KG + A LN + ++PLHLA +I L+ G D ++D GNTPL A
Sbjct: 27 QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Query: 265 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 316
+ G +L + + L + C+ +A G +++ ++S G D N++
Sbjct: 84 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 317 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
+ + RT LH+A + LLL+ GA V G +P
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 284 VDDAGSFLCIAVARGDS----DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
+D SFL +A+ + +++++V + N ++ +TPLH+A +A+ L
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 340 LEAGASVFTKDRWGNTPL 357
L AG +D GNTPL
Sbjct: 62 LGAGCDPELRDFRGNTPL 79
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 125
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
++L S FGE+ +L + +VR RL + +F +LE Y R
Sbjct: 126 KGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 185
Query: 160 TNLLE-----GKESNLRLKQVESDIT 180
T L+ GK++++ L +V+ D+
Sbjct: 186 TVALDRLDRIGKKNSILLHKVQHDLN 211
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
L T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SL
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 275 LVKEGASLN 283
L+K GA +N
Sbjct: 170 LLKCGADVN 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
Q+KG + A LN + ++PLHLA +I L+ G D ++D GNTPL A
Sbjct: 30 QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 265 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 316
+ G +L + + L + C+ +A G +++ ++S G D N++
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 317 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
+ + RT LH+A + LLL+ GA V G +P
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 284 VDDAGSFLCIAVARGDS----DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
+D SFL +A+ + +++++V + N ++ +TPLH+A +A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 340 LEAGASVFTKDRWGNTPL 357
L AG +D GNTPL
Sbjct: 65 LGAGCDPELRDFRGNTPL 82
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
L A +RG + L++ G D N ++FG P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 287 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
D WG P+D G++++ + L A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 243
G +A LA +AA G + ++ L+ AGAD N + GR P+ + G + L+
Sbjct: 10 GSSDAGLA----TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 244 QKGVDINIKDKFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA--RGDS 300
G + N D T P+ +A + G +L + GA L+V DA L + +A +G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 301 DLLK 304
D+ +
Sbjct: 125 DIAR 128
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 223 GRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL---LVK 277
G++ LH G Y + L+Q G KDK TPL A + + L V
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 278 EGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 333
+SL +D A S L A+ D+ R + G+D N D +H PL+++
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 334 LMAKLLLE 341
L+ K LL+
Sbjct: 258 LLTKELLQ 265
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 218 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 277
K+D + +H+A +G D LI+ GV I+++FG T L A K G L
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 278 EGASLNVDDAGSFLCIAVARGDSDLLKRVL----SNGVDPNS--RDYDHR---------- 321
G ++ + +AV +DL+ ++ G P S + D R
Sbjct: 75 VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 322 -----TPLHVAASEGLYLMA--KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
T LH G + K+L++ GAS KD+ TPL N+ + L D
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
L+ + G S LH A +ED+ ++ G+D+N +D PL +++ LL
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAA----XVLL 259
Query: 276 VKE 278
KE
Sbjct: 260 TKE 262
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
L A +RG + L++ G + N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 384
+D WG P+D G++++ + L A H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 196 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
+AA G + +++ L+ AGA+ N + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPA 76
Query: 256 GNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 296
T P+ +A + G +L + GA L+V DA L + +A
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
AA G+L ++ ++ D ++ + +G + LH A I FLI G ++N D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASL 282
TPL A C + LV+ GA++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAI 113
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 353
A G+ +++++ + DP+ + + T LH A Y + L+ AGA+V + D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 354 NTPLDEGRMCGN 365
TPL C +
Sbjct: 88 WTPLHCAASCND 99
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 260 LLEAIKCGHDGVTSLLVKE--GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
LL+A G V VKE S ++ + L A+ + ++ +++ G + NS D
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFT 348
TPLH AAS ++ L++ GA++F
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIK 252
+ A H D ++ L AGADLNK + GR+PLHLA + L++ G D +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 291
G TPL A+ + + LL GA +D G L
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
L +YDG +PLH+A ++ L G D+N + G TPL A++ V L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
L+K GA DP +R Y RTPL A +
Sbjct: 211 LLKAGA-------------------------------DPTARMYGGRTPLGSALLRPNPI 239
Query: 335 MAKLLLEAGA 344
+A+LL GA
Sbjct: 240 LARLLRAHGA 249
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 344
D + L +AV D+++++ + G D N + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 345 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 282
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 283 NVDDAGSFL-----CI-----AVARGDSDLLKRVLSNGVDPNSRD---------YDHRTP 323
D + ++L C A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 357
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIK 252
+ A H D ++ L AGADLNK + GR+PLHLA + L++ G D +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 291
G TPL A+ + + LL GA +D G L
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
L +YDG +PLH+A ++ L G D+N + G TPL A++ V L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
L+K GA DP +R Y RTPL A +
Sbjct: 211 LLKAGA-------------------------------DPTARMYGGRTPLGSALLRPNPI 239
Query: 335 MAKLLLEAGA 344
+A+LL GA
Sbjct: 240 LARLLRAHGA 249
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 344
D + L +AV D+++++ + G D N + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 345 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 282
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 283 NVDDAGSFL-----CI-----AVARGDSDLLKRVLSNGVDPNSRD---------YDHRTP 323
D + ++L C A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 357
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 77 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 131
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
++L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 132 KGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 72 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 131
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 132 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 31/158 (19%)
Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
L A +RG + L++ G N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
+ P+H AA EG +L AGA +
Sbjct: 75 PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 384
+D WG P+D G++++ + L A H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+AA G + +++ L+ AGA N + GR P+ + G + L+ G + N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 254 KFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 296
T P+ +A + G +L + GA L+V DA L + +A
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
P+H A G+ D + L + G ++++D +G P+ A + GH V L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 77 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 136
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 137 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 125
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
++L S FGE+ +L + VR RL + +F +LE Y
Sbjct: 126 KGNKETKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + LF F+ ++ +L E F PG+ I+ +G V ++YF
Sbjct: 77 VATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKE 136
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 137 M-----KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIK 252
+ AA G+L L+ + +N D G + L+ A G++DI L Q +++N +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
+K G+T L A G+ + LL+ +GA ++
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLN 283
+PLH A RG + V +N DK G+T L A GH D V L + LN
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 284 VDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
+ + L A +G +D+++ +L+ G + R+ + + A +
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 215 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+LN+ + G + LH A +GY DI L+ KG ++++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
Y G PL A G E+I LI+ G DI +D GNT L
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 224 RSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL--------LEAIKCGHDGVTSL 274
SPL LA + ++ L +G +++ + G T L LEA + L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVD-------------PNSRDYDHR 321
V E + + + + L IAV + +L++ +L+ G P++ Y
Sbjct: 64 -VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 322 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
PL AA G + +LL+E GA + +D GNT L
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LF F+ + +L E F PG+ I+ +G + + YF
Sbjct: 79 LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYF-----IQHGVVSVLTKGNKE 133
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
+L S FGE+ +L + +VR RL + +F +LE Y
Sbjct: 134 XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ V F G S F+ ++V L E F P + ++++G D+++F
Sbjct: 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFF----IQQGIVDIIMS 128
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
+ L S FGE+ +L + +V+ L + Q F +L+
Sbjct: 129 DGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ E +++QG+ D Y
Sbjct: 45 LFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSV- 103
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
Q SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 104 GQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIE 163
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 7/123 (5%)
Query: 33 QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXX----- 87
+ ++ +IE V LFK +IV + E+ + GE I+ QG D Y
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 88 --XXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFT 145
+ FGE++++ N P+ + + L +D Q+F
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFE 274
Query: 146 SIL 148
+L
Sbjct: 275 RLL 277
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 99
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ + SFGE++++ P+ TV+ +L ID+ S+ IL
Sbjct: 100 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 1 MRPGP-----AVARACGRKEEVRYLLWIRLYPVRK------------ISQTLYMPYIEKV 43
M PG A+ C R V+ L+ ++L+ + + I T YM +++ V
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV 162
Query: 44 SLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLY 83
F+ E ++++ L E + GE I+ QG D +
Sbjct: 163 PTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFF 202
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 107 LQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ P FGE++IL N + TV+ +L ID+Q F +I+
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 144
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 106
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ + SFGE++++ P+ TV+ +L ID+ S+ IL
Sbjct: 107 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 150
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 210
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 210
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 32/144 (22%)
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
I+ FLI KG DI + K G T + G + +T
Sbjct: 57 ISXFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT------------------------- 91
Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLH-------VAASEGLYLMAKLLLEAGASVFTKD 350
G ++L K L G D + ++ + V +E + L + ++G + KD
Sbjct: 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEXIPLYKLIFSQSGLQLLIKD 151
Query: 351 RWGNTPLDEGRMCGNKNLIKLLED 374
+WG T L+ + C +K ED
Sbjct: 152 KWGLTALEFVKRCQKPIALKXXED 175
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 99
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 100 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 159
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV-IDRGTFDIYVKCDGVGRCV 103
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
SFGE++++ N P+ T+ L +D+ +F I+
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 111 SSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLL 163
++FGE SIL N P+ T+ E S LLRI+++ F ++ E Y R+ + LL
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY----RQYMAGLL 164
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXX 104
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV-IDRGTFDIYVKCDGVGRCV 109
Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
SFGE++++ N P+ T+ L +D+ +F I+
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 111 SSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
++FGE SIL N P+ T+ E S LLRI+++ F ++ E Y
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 111 SSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
++FGE SIL N P+ T+ E S LLRI+++ F ++ E Y
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 100
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ + SFGE++++ P+ TV+ +L ID+ S+ IL
Sbjct: 101 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 144
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 37 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 96
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ + SFGE++++ P+ TV+ +L ID+ S+ IL
Sbjct: 97 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 140
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 39 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 98
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ + SFGE++++ P+ TV+ +L ID+ S+ IL
Sbjct: 99 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 142
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 209 LIRAGADLNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
L AGADL+ D G + LH+A ++ L++ G DI ++D+ G T L
Sbjct: 95 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ +AA D L L+ D++ D +GR+ L G + L + G D++ +D
Sbjct: 48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
Query: 254 KFGN-TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
G T L A V LV+ GA + V+D + +AR
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 209 LIRAGADLNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
L AGADL+ D G + LH+A ++ L++ G DI ++D+ G T L
Sbjct: 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
+ +AA D L L+ D++ D +GR+ L G + L + G D++ +D
Sbjct: 49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107
Query: 254 KFGN-TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
G T L A V LV+ GA + V+D + +AR
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 291 LCIAVARGDS-DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
L + VA S L+ ++ NG +++ D T LH AA KLLL+ A V T
Sbjct: 177 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Query: 350 DRWGNTPLDEGRMCGNKNLIKLLEDAKC 377
+ G T LD R +K +LLE A+
Sbjct: 237 NEAGETALDIARKKHHKECEELLEQAQA 264
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 291 LCIAVARGDS-DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
L + VA S L+ ++ NG +++ D T LH AA KLLL+ A V T
Sbjct: 196 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255
Query: 350 DRWGNTPLDEGRMCGNKNLIKLLEDAK 376
+ G T LD R +K +LLE A+
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQ 282
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 56 QIVIRLHEEFFLP-GEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFG 114
++VI EE +P G I++QG+ D Y P SSFG
Sbjct: 24 RLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSG-----PGSSFG 78
Query: 115 EVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
E++++ N P+ TV L +D+ +F IL
Sbjct: 79 ELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 107 LQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
+ P FGE++IL N + TV+ +L ID+Q F +I+
Sbjct: 87 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 128
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + +F+G +N ++ + F G I ++G D+LY
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYT 127
+ + P+ FGE+SI P P T
Sbjct: 88 RENLLTIMGPSDMFGELSIFD--PGPRT 113
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 67 LPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPY 126
+ GE +++QGN D Y + + SFGE++++ P+
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWV-----TNISEGGSFGELALIYGTPRAA 213
Query: 127 TVRICELSRLLRIDKQSFTSIL 148
TV+ +L ID+ S+ IL
Sbjct: 214 TVKAKTDLKLWGIDRDSYRRIL 235
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 39/107 (36%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + +F+G I + +L F G + +G D+LY
Sbjct: 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 67
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTS 146
+ + P+ FGE+SI P+ + R + +D+ + S
Sbjct: 68 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRS 114
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 39/107 (36%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + +F+G I + +L F G + +G D+LY
Sbjct: 6 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 65
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTS 146
+ + P+ FGE+SI P+ + R + +D+ + S
Sbjct: 66 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRS 112
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 282
PLH A + I L+ G+D + D GNT L A+ G+ L VK+ L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 39/107 (36%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + +F+G I + +L F G + +G D+LY
Sbjct: 5 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 64
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTS 146
+ + P+ FGE+SI P+ + R + +D+ + S
Sbjct: 65 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRS 111
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 39/107 (36%)
Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
+ + +F+G I + +L F G + +G D+LY
Sbjct: 30 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTS 146
+ + P+ FGE+SI P+ + R + +D+ + S
Sbjct: 90 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRS 136
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
LK +++N + N++D + T L++AA G + LL+ GA F ++ G P+D G
Sbjct: 268 LKWIIANML--NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 42 KVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF 84
++ LF+ S + + + + F PGE ++ QG+ + +YF
Sbjct: 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYF 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,280,524
Number of Sequences: 62578
Number of extensions: 448091
Number of successful extensions: 1856
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 537
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)