BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015682
         (402 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
 pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
 pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
           Apo Form
 pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
           Apo Form
 pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
           Complexed With Nadp And 15-Oxo-Pge2
 pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
           Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
           Complexed With Nadp And 15-Oxo-Pge2
 pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
           And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
           Prostaglandin 13-Reductase Complex
 pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
           And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
           Prostaglandin 13-Reductase Complex
          Length = 333

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 86  VSRPP--SGLINIEGRLLSVEKQVAIALRRLASGESQVSVGV---------AFGVGQSTV 134
           V  PP  +G + +E   LSV+  + IA +RL  G   +   V         AF  G   +
Sbjct: 31  VELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVESKNSAFPAGSIVL 90

Query: 135 SQVTW--RFIEALEERAKHHLKWPDSNRMEEIKSK-----FEESFGLLNCCGAIDATHII 187
           +Q  W   FI   +   K   +WPD   +               FGLL  CG      ++
Sbjct: 91  AQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVL 150

Query: 188 MTLPA 192
           ++  A
Sbjct: 151 VSAAA 155


>pdb|3AGJ|B Chain B, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|D Chain D, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|F Chain F, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
 pdb|3AGJ|H Chain H, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
           Alpha Complex
          Length = 358

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 28/209 (13%)

Query: 47  NSSTPGATIPSDEEEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRL-LSVEK 105
           ++  PG   PS E+E  KY  R +K+       +V E    R P  +I   G+L  SV +
Sbjct: 158 SARLPGKDDPSREQEVEKYVDRAAKR-------IVEEAARHRSPIAVIAGPGQLKTSVAE 210

Query: 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIK 165
           +V  A+  L       S+G   GV ++   +   R +  L       +      R+ + +
Sbjct: 211 KVQRAMPSLKVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSR 270

Query: 166 SKFEESFG---LLNCCGAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFID 222
                + G    +   GA+D   ++ TL  + + DD           V+  VD  +R ++
Sbjct: 271 DTVAYTPGEVLAVARMGAVDTVLLVDTL--LHSPDDA----------VREAVDEALRLVE 318

Query: 223 IVTG----WPGGMNVS-RLLKFSGFFKLC 246
            + G     PG      RL+ F G   L 
Sbjct: 319 SMGGRVIIIPGDSPAGERLVSFGGVIALL 347


>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
 pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
 pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
 pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
          Length = 414

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 275 YPLLSWLITPYETNGLSASMPT 296
           YP+  W+IT YE+  L  ++PT
Sbjct: 168 YPVFPWVITNYESEELDLTLPT 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,931,412
Number of Sequences: 62578
Number of extensions: 437950
Number of successful extensions: 965
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 3
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)