BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015682
(402 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 130/296 (43%), Gaps = 24/296 (8%)
Query: 60 EEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGES 119
+E + ++ Y+ L+ +L SRP R +S E QV AL SG
Sbjct: 32 DEYLMSMYGFPRQFIYYLVELLGANL-SRPTQ-----RSRAISPETQVLAALGFYTSGSF 85
Query: 120 QVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWP-DSNRMEEIKSKFEESFGLLNCC 178
Q +G A G+ Q+++S+ EAL ERA +++P D ++ +K +F G+
Sbjct: 86 QTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEASIQALKDEFYGLAGMPGVM 145
Query: 179 GAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLK 238
G +D H+ + P + + +++ +S+ + D + + T WPG + +L+
Sbjct: 146 GVVDCIHVAIKAPNAEDL-SYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQ 204
Query: 239 FSGFFKLCEAGQRLNGNVRISSEEVELREYIVGGVGYPLLSWLITPYETNGLSASMPTFN 298
S EAG + +++G + L +WL+TP A +N
Sbjct: 205 QSSLSSQFEAGMHKDS-------------WLLGDSSFFLRTWLMTPLHIPETPAEY-RYN 250
Query: 299 SLHEATRSLAVKAFLQLKGGWRIL--SKVMWRPDKRKLPSIILVCCLLHNIIIDSG 352
H AT S+ K F L +R L SK + K IIL CC+LHNI ++ G
Sbjct: 251 MAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHG 306
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 29/292 (9%)
Query: 67 FRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVA 126
F ++ Y+ L+++ L+ R R +S + Q+ AL SG Q +G A
Sbjct: 39 FGFPREFIYYLVELLKDSLLRRTQ------RSRAISPDVQILAALGFYTSGSFQSKMGDA 92
Query: 127 FGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKFEESF----GLLNCCGAID 182
G+ Q+++S+ +AL E+A + + R E K +F++ F G+ N G +D
Sbjct: 93 IGISQASMSRCVSNVTKALIEKAPEFIGF---TRDEATKQQFKDEFYRIAGIPNVTGVVD 149
Query: 183 ATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLKFSGF 242
HI + P S + +++ +S+ Q + D + T WPG + + K S
Sbjct: 150 CAHIAIKAPNADDSS-YVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNV 208
Query: 243 FKLCEAGQRLNGNVRISSEEVELREYIVGGVGYPLLSWLITPYETNGLSASMPTFNSLHE 302
KL E +E + +++G YPL WL+TP ++ A +N H
Sbjct: 209 AKLFE------------EQENDDEGWLLGDNRYPLKKWLMTPVQSPESPADY-RYNLAHT 255
Query: 303 ATRSLAVKAFLQLKGGWRIL--SKVMWRPDKRKLPSIILVCCLLHNIIIDSG 352
T + + F ++ +R L +K + K II CC+LHNI + SG
Sbjct: 256 TTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNISLQSG 307
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 24/296 (8%)
Query: 60 EEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGES 119
+E + ++ Y+ L+ L SRP R +S E Q+ AL SG
Sbjct: 32 DEYLMSMYGFPRQFIYYLVELLGASL-SRPTQ-----RSRAISPETQILAALGFYTSGSF 85
Query: 120 QVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWP-DSNRMEEIKSKFEESFGLLNCC 178
Q +G A G+ Q+++S+ EAL ERA + +P D ++ +K +F G+
Sbjct: 86 QTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEASVQALKDEFYGLAGIPGVI 145
Query: 179 GAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLK 238
G +D H+ + P + + +++ +S+ + D + + T WPG + +L+
Sbjct: 146 GVVDCMHVAIKAPNAEDL-SYVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQ 204
Query: 239 FSGFFKLCEAGQRLNGNVRISSEEVELREYIVGGVGYPLLSWLITPYETNGLSASMPTFN 298
S EAG + +++G + L +WL+TP A +N
Sbjct: 205 QSSLSSQFEAG-------------MHKESWLLGDSSFFLRTWLMTPLHIPETPAEY-RYN 250
Query: 299 SLHEATRSLAVKAFLQLKGGWRIL--SKVMWRPDKRKLPSIILVCCLLHNIIIDSG 352
H AT S+ K F L +R L SK + K IIL CC+LHNI ++ G
Sbjct: 251 MAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHG 306
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 24/296 (8%)
Query: 60 EEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGES 119
+E + ++ Y+ L+ L SRP R +S E Q+ AL SG
Sbjct: 32 DEYLMSMYGFPRQFIYYLVELLGASL-SRPTQ-----RSRAISPETQILAALGFYTSGSF 85
Query: 120 QVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWP-DSNRMEEIKSKFEESFGLLNCC 178
Q +G A G+ Q+++S+ EAL ERA + +P D ++ +K +F G+
Sbjct: 86 QTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAAIQSLKDEFYGLAGMPGVI 145
Query: 179 GAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLK 238
GA+D H+ + P + + +++ +S+ + D + + T WPG + +L+
Sbjct: 146 GAVDCIHVAIKAPNAEDL-SYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQ 204
Query: 239 FSGFFKLCEAGQRLNGNVRISSEEVELREYIVGGVGYPLLSWLITPYETNGLSASMPTFN 298
S E G + +++G + L +WL+TP A +N
Sbjct: 205 QSSLSSQFETGMPKDS-------------WLLGDSSFFLHTWLLTPLHIPETPAEY-RYN 250
Query: 299 SLHEATRSLAVKAFLQLKGGWRIL--SKVMWRPDKRKLPSIILVCCLLHNIIIDSG 352
H AT S+ K L +R L SK + K IIL CC+LHNI ++ G
Sbjct: 251 RAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHG 306
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 18/257 (7%)
Query: 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWP-D 157
R +S E Q+ AL SG Q +G A G+ Q+++S+ EAL ERA + +P D
Sbjct: 65 RAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVD 124
Query: 158 SNRMEEIKSKFEESFGLLNCCGAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHE 217
++ +K +F G+ G D H+ + P + + +++ +S+ + D
Sbjct: 125 EAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDL-SYVNRKGLHSLNCLVVCDIR 183
Query: 218 MRFIDIVTGWPGGMNVSRLLKFSGFFKLCEAGQRLNGNVRISSEEVELREYIVGGVGYPL 277
+ + T WPG + +L+ S E G + +++G + L
Sbjct: 184 GALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKD-------------SWLLGDSSFFL 230
Query: 278 LSWLITPYETNGLSASMPTFNSLHEATRSLAVKAFLQLKGGWRIL--SKVMWRPDKRKLP 335
SWL+TP +A +N H AT S+ + L +R L SK + K
Sbjct: 231 RSWLLTPLPIPETAAEY-RYNRAHSATHSVIERTLQTLCCRFRCLDGSKGALQYSPEKCS 289
Query: 336 SIILVCCLLHNIIIDSG 352
IIL CC+LHNI +D G
Sbjct: 290 HIILACCVLHNISLDHG 306
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 128/312 (41%), Gaps = 32/312 (10%)
Query: 74 FDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQST 133
DY+ L+ L SRP R +S E Q+ AL SG Q +G G+ Q++
Sbjct: 46 IDYLVDLLGASL-SRPTH-----RSRAISPETQIMAALGFYTSGSFQTRMGDTIGISQAS 99
Query: 134 VSQVTWRFIEALEERAKHHLKWP-DSNRMEEIKSKFEESFGLLNCCGAIDATHIIMTLPA 192
+S+ EAL ERA + +P D ++ +K +F G+ G +D T + + P
Sbjct: 100 MSRCVTNVTEALVERASQFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAP- 158
Query: 193 VQTSDD--WCDQENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLKFSGFFKLCEAGQ 250
S+D + + +S+ + D + T G M + +L S L E
Sbjct: 159 --NSEDLSYVNSRGLHSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKM 216
Query: 251 RLNGNVRISSEEVELREYIVGGVGYPLLSWLITPYETNGLSASMPTFNSLHEATRSLAVK 310
G +++ + L WL+TP + S S +N H AT S+ +
Sbjct: 217 HKQG-------------WLLADNAFILRPWLMTPVQIPE-SPSDYRYNMAHTATHSVMER 262
Query: 311 AFLQLKGGWRIL--SKVMWRPDKRKLPSIILVCCLLHNIIIDSGDQLHPDVALSDHHDSG 368
L+ +R L S+ + K I+L CC+LHNI + Q D+ S
Sbjct: 263 TQRSLRLRFRCLDGSRATLQYSPEKSAQIVLACCILHNIAL----QHDLDIVSESGATSL 318
Query: 369 YGEQCCKQVDPM 380
E+ C ++P+
Sbjct: 319 EPEEECVHMEPL 330
>sp|A1L2P7|EFTS_XENLA Elongation factor Ts, mitochondrial OS=Xenopus laevis GN=tsfm PE=2
SV=1
Length = 312
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 77 ICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQ 136
+C+ +R LVS P GL + RLL+ +K + + LR+ G +F + + Q
Sbjct: 4 LCNNLRAKLVSWQPVGLFHTGVRLLAADKDLLVKLRK--------KTGYSFMNCKKALEQ 55
Query: 137 VTWRFIEA---LEERAKHHLKWPDSNRMEEIKSKFEESFGLLNCCGAIDATHIIMTLPAV 193
F +A L ++A+ W +++++ K+K E GLL D + +M V
Sbjct: 56 CANDFKQAETWLHQQAQKE-GWDKASKLQGRKTK-EGLVGLLQ-----DGSTSVMV--EV 106
Query: 194 QTSDDWCDQENNYSMLVQGIVDHEMR 219
D+ + + + LVQ + +R
Sbjct: 107 NCETDFVARNSKFQQLVQQVAVSTLR 132
>sp|B7KH96|LEUC_CYAP7 3-isopropylmalate dehydratase large subunit OS=Cyanothece sp.
(strain PCC 7424) GN=leuC PE=3 SV=1
Length = 467
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 276 PLLSWLITPYETNGLSASMPTFNSLHEATRSLAVKAFLQLK 316
P ++W ITP + G+S ++PT SL E+ R +A +A+ +K
Sbjct: 287 PTVTWGITPGQGIGVSEAVPTPESLAESDRYIAKEAYEYMK 327
>sp|B1WZV3|LEUC_CYAA5 3-isopropylmalate dehydratase large subunit OS=Cyanothece sp.
(strain ATCC 51142) GN=leuC PE=3 SV=1
Length = 467
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 276 PLLSWLITPYETNGLSASMPTFNSLHEATRSLAVKA--FLQLKGGWRI 321
P ++W ITP + G+S +PT SL E+ R++A +A ++QL G I
Sbjct: 287 PTVTWGITPGQGIGISEPVPTPESLPESDRAIAQEAYSYMQLSPGTPI 334
>sp|Q6AXN4|NDC1_RAT Nucleoporin NDC1 OS=Rattus norvegicus GN=Tmem48 PE=1 SV=1
Length = 673
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 318 GWRILSKVMWRPDKRKLPSIILVCCLLHNIIIDSGDQLHPDVALSDHHDSGYGEQ 372
GWRI++ V+W ++L C+ I+ S D HP LSD + Y Q
Sbjct: 23 GWRIVTSVVWS-------VLLLPVCITAFIVFSSIDLFHPIQWLSDSLNEFYSSQ 70
>sp|Q07QK9|DNAE2_RHOP5 Error-prone DNA polymerase OS=Rhodopseudomonas palustris (strain
BisA53) GN=dnaE2 PE=3 SV=1
Length = 1153
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 286 ETNGLSASMPTFN-SLHEATRSLAVKAFLQLKGGWRILSKVMWRPDKRKLPSIILVCCLL 344
E+ L MP + HE T +L LQ G W L DKR+L + +
Sbjct: 165 ESRLLLVLMPPYRFQSHEITAALTRLTALQGAGVWLALVPYYRGDDKRRLARLQRIAAAA 224
Query: 345 HNIIIDSGDQLHPDVALSDHHDSGYGEQ----CCKQ---VDPMGRTTRENLEKHLQHNQE 397
I S D L+ HH+S Q C + +D GR N E++L+ +E
Sbjct: 225 RVPGIASNDVLY-------HHESRRALQDVLTCVRDKTTIDKAGRLLESNAERYLKPTEE 277
>sp|Q49SP6|TPGD2_POGCB Germacrene D synthase 2 OS=Pogostemon cablin PE=1 SV=1
Length = 554
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 314 QLKGGWRILSKVMWRPDKRKLPSI--ILVCCLLHNIIIDSGDQL-HPDVALSD 363
Q++ GW+ +++ RP K P + IL C + +I D D+ H D AL D
Sbjct: 491 QIESGWKTINEAFLRPTKFPTPILYRILNYCRVLEVIYDKSDRYTHVDPALQD 543
>sp|B0JK91|DEOC_MICAN Deoxyribose-phosphate aldolase OS=Microcystis aeruginosa (strain
NIES-843) GN=deoC PE=3 SV=1
Length = 225
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 110 ALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKH-----HLKWPDSNRMEEI 164
A++ L ++ VS + F G +T + + +EA++ AK +L W + E++
Sbjct: 53 AVQLLHGKKTLVSTVIGFPAGATTSAVKRYEALEAVDNGAKELDVVINLGWLKDGKSEQL 112
Query: 165 KSKFEESFGLLNCCGAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIV 224
F+E + G T+ A+ + D E + + +D + ++
Sbjct: 113 ---FQEIASICQETG--------QTVKAILETSQLTDTEKRLAAEI--CMDAGVSYLKTS 159
Query: 225 TGWPGGMNVSRLLKFSGFFKLCEAGQRLNGNVRISSEEVEL 265
TGW GG VS +KF G + +G +R + + L
Sbjct: 160 TGWFGGATVSD-VKFLKEISKGRVGIKASGGIRTLEQAIAL 199
>sp|A0Q3B0|SYI_CLONN Isoleucine--tRNA ligase OS=Clostridium novyi (strain NT) GN=ileS
PE=3 SV=1
Length = 1038
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 182 DATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDHEMRFIDIVTGWPG 229
D T I+ T PA D+ ++ Y + + +VD E +F+D VT W G
Sbjct: 311 DGTGIVHTAPAYGEDDNMTGKK--YDLPLINLVDGEGKFVDSVTPWKG 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,401,860
Number of Sequences: 539616
Number of extensions: 6325240
Number of successful extensions: 18203
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 18163
Number of HSP's gapped (non-prelim): 35
length of query: 402
length of database: 191,569,459
effective HSP length: 120
effective length of query: 282
effective length of database: 126,815,539
effective search space: 35761981998
effective search space used: 35761981998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)