Query 015682
Match_columns 402
No_of_seqs 290 out of 1733
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 95.0 0.0089 3E-07 39.5 1.8 41 99-140 4-44 (51)
2 2w7n_A TRFB transcriptional re 94.6 0.021 7E-07 44.9 3.1 60 68-146 4-63 (101)
3 2glo_A Brinker CG9653-PA; prot 94.3 0.016 5.5E-07 40.6 1.6 43 98-141 3-49 (59)
4 1jhg_A Trp operon repressor; c 94.0 0.0088 3E-07 46.9 -0.2 47 100-147 35-87 (101)
5 2jn6_A Protein CGL2762, transp 93.8 0.024 8.3E-07 43.8 2.1 43 99-141 4-47 (97)
6 2p7v_B Sigma-70, RNA polymeras 93.4 0.034 1.2E-06 39.9 2.2 48 100-147 5-55 (68)
7 1tty_A Sigma-A, RNA polymerase 93.3 0.047 1.6E-06 41.3 2.9 48 100-147 18-68 (87)
8 1ku3_A Sigma factor SIGA; heli 93.1 0.057 2E-06 39.3 2.9 47 100-146 10-59 (73)
9 2o8x_A Probable RNA polymerase 92.9 0.057 2E-06 38.5 2.7 48 100-148 15-62 (70)
10 3hug_A RNA polymerase sigma fa 92.6 0.075 2.6E-06 40.5 3.1 48 101-149 38-85 (92)
11 3t72_q RNA polymerase sigma fa 92.4 0.12 4.2E-06 40.3 4.1 48 101-148 20-70 (99)
12 1wy3_A Villin; structural prot 91.6 0.068 2.3E-06 33.2 1.4 22 58-79 1-22 (35)
13 2elh_A CG11849-PA, LD40883P; s 91.5 0.067 2.3E-06 40.5 1.6 45 98-143 20-64 (87)
14 2jrt_A Uncharacterized protein 91.0 0.11 3.8E-06 40.2 2.4 45 97-141 29-73 (95)
15 1und_A Advillin, P92; actin bi 90.9 0.087 3E-06 33.2 1.4 22 58-79 3-24 (37)
16 1iuf_A Centromere ABP1 protein 90.6 0.15 5E-06 42.6 3.0 48 96-143 7-62 (144)
17 1jko_C HIN recombinase, DNA-in 90.2 0.053 1.8E-06 36.0 -0.1 38 101-139 6-43 (52)
18 1k78_A Paired box protein PAX5 90.1 0.13 4.5E-06 42.7 2.4 46 97-143 29-74 (149)
19 1pdn_C Protein (PRD paired); p 90.0 0.15 5E-06 40.7 2.4 44 98-142 15-58 (128)
20 1fse_A GERE; helix-turn-helix 89.4 0.22 7.5E-06 35.8 2.8 45 99-145 10-54 (74)
21 1or7_A Sigma-24, RNA polymeras 89.2 0.22 7.6E-06 42.8 3.2 51 101-152 141-191 (194)
22 1s7o_A Hypothetical UPF0122 pr 89.1 0.22 7.5E-06 39.8 2.8 48 101-149 23-70 (113)
23 1je8_A Nitrate/nitrite respons 88.8 0.19 6.3E-06 37.5 2.0 45 99-145 20-64 (82)
24 1hlv_A CENP-B, major centromer 88.7 0.16 5.5E-06 41.2 1.8 49 97-145 4-53 (131)
25 1rp3_A RNA polymerase sigma fa 88.6 0.25 8.7E-06 43.8 3.3 50 100-150 187-236 (239)
26 1xsv_A Hypothetical UPF0122 pr 88.4 0.29 1E-05 38.9 3.2 49 101-150 26-74 (113)
27 1u78_A TC3 transposase, transp 88.4 0.13 4.4E-06 42.0 1.0 42 99-141 5-46 (141)
28 1j1v_A Chromosomal replication 88.0 0.15 5.3E-06 39.3 1.2 51 97-147 26-77 (94)
29 3c57_A Two component transcrip 88.0 0.25 8.5E-06 37.9 2.4 46 100-147 27-72 (95)
30 2q1z_A RPOE, ECF SIGE; ECF sig 87.8 0.51 1.8E-05 40.1 4.6 47 101-148 136-182 (184)
31 2rn7_A IS629 ORFA; helix, all 87.3 0.12 4E-06 40.6 0.1 43 99-141 5-54 (108)
32 2x48_A CAG38821; archeal virus 86.9 0.16 5.6E-06 34.4 0.6 39 100-139 13-53 (55)
33 1p4w_A RCSB; solution structur 86.6 0.46 1.6E-05 36.9 3.2 45 99-145 33-77 (99)
34 1x3u_A Transcriptional regulat 86.5 0.26 8.8E-06 36.0 1.6 43 101-145 17-59 (79)
35 2jpc_A SSRB; DNA binding prote 86.2 0.22 7.6E-06 34.4 1.0 32 114-145 10-41 (61)
36 2k27_A Paired box protein PAX- 85.5 0.33 1.1E-05 40.7 2.0 43 97-140 22-64 (159)
37 2rnj_A Response regulator prot 85.0 0.32 1.1E-05 36.9 1.5 44 100-145 29-72 (91)
38 1qzp_A Dematin; villin headpie 83.8 0.39 1.3E-05 34.6 1.4 22 58-79 34-55 (68)
39 3mzy_A RNA polymerase sigma-H 83.4 0.5 1.7E-05 39.1 2.2 48 101-150 110-157 (164)
40 3pvv_A Chromosomal replication 82.6 0.4 1.4E-05 37.4 1.2 51 97-147 30-80 (101)
41 3ulq_B Transcriptional regulat 82.1 0.63 2.2E-05 35.3 2.1 45 99-145 28-72 (90)
42 2lfw_A PHYR sigma-like domain; 81.8 0.6 2E-05 39.0 2.1 50 100-150 93-142 (157)
43 1yu8_X Villin; alpha helix, 3- 81.3 0.43 1.5E-05 34.2 0.8 22 58-79 33-54 (67)
44 1u78_A TC3 transposase, transp 80.6 1.5 5E-05 35.4 4.1 77 59-140 24-102 (141)
45 2k6m_S Supervillin; SVHP, HP, 80.1 0.45 1.5E-05 34.2 0.6 22 58-79 33-54 (67)
46 3frw_A Putative Trp repressor 78.3 0.69 2.4E-05 36.3 1.2 28 112-139 53-80 (107)
47 3hot_A Transposable element ma 77.8 17 0.00057 33.9 11.1 165 61-238 30-220 (345)
48 1l0o_C Sigma factor; bergerat 77.5 0.47 1.6E-05 42.0 0.0 44 100-144 198-241 (243)
49 1ujs_A Actin-binding LIM prote 74.4 0.63 2.2E-05 35.2 -0.0 23 58-80 48-70 (88)
50 3kor_A Possible Trp repressor; 73.5 0.86 2.9E-05 36.5 0.6 32 108-139 66-97 (119)
51 1l9z_H Sigma factor SIGA; heli 71.9 1.8 6.3E-05 42.8 2.7 46 101-146 376-424 (438)
52 3ech_A MEXR, multidrug resista 71.3 3.2 0.00011 33.4 3.7 42 101-143 35-77 (142)
53 2a6h_F RNA polymerase sigma fa 71.2 2.1 7.2E-05 42.2 2.9 46 101-146 361-409 (423)
54 2d1h_A ST1889, 109AA long hypo 71.1 1.7 5.7E-05 33.1 1.8 28 115-142 34-61 (109)
55 2l1p_A DNA-binding protein SAT 70.1 0.95 3.2E-05 33.6 0.1 31 109-139 24-54 (83)
56 1zx4_A P1 PARB, plasmid partit 69.5 1.7 5.7E-05 38.0 1.5 41 100-140 7-47 (192)
57 2ao9_A Phage protein; structur 69.4 1.5 5.3E-05 36.9 1.3 54 100-153 23-87 (155)
58 2jt1_A PEFI protein; solution 68.6 0.73 2.5E-05 34.0 -0.8 22 118-139 25-46 (77)
59 1qgp_A Protein (double strande 66.7 2.1 7.3E-05 31.3 1.4 39 104-142 16-56 (77)
60 2heo_A Z-DNA binding protein 1 66.4 2.1 7.1E-05 30.4 1.3 39 104-142 12-50 (67)
61 2oa4_A SIR5; structure, struct 65.6 3.7 0.00013 31.9 2.7 43 100-142 33-75 (101)
62 2qvo_A Uncharacterized protein 65.3 1.6 5.5E-05 33.0 0.5 26 118-143 31-56 (95)
63 1uxc_A FRUR (1-57), fructose r 64.6 1 3.4E-05 32.0 -0.7 21 119-139 2-22 (65)
64 2cob_A LCOR protein; MLR2, KIA 64.6 2 6.9E-05 30.9 0.9 39 102-140 14-53 (70)
65 3iyd_F RNA polymerase sigma fa 64.2 4.1 0.00014 42.1 3.5 48 100-147 550-600 (613)
66 3r0a_A Putative transcriptiona 63.8 2.2 7.4E-05 34.2 1.0 39 105-143 29-68 (123)
67 2lkp_A Transcriptional regulat 63.7 3.9 0.00013 32.0 2.6 28 116-143 44-71 (119)
68 3dv8_A Transcriptional regulat 63.6 2.2 7.7E-05 36.8 1.2 44 100-143 145-195 (220)
69 1r1u_A CZRA, repressor protein 63.3 4 0.00014 31.4 2.5 29 115-143 37-65 (106)
70 3ryp_A Catabolite gene activat 62.6 2.8 9.5E-05 35.9 1.6 42 101-142 138-192 (210)
71 1ku9_A Hypothetical protein MJ 62.3 2.4 8.1E-05 34.2 1.1 39 104-142 28-66 (152)
72 3tgn_A ADC operon repressor AD 62.3 12 0.0004 29.9 5.4 43 99-143 34-77 (146)
73 3mky_B Protein SOPB; partition 62.1 2.5 8.6E-05 36.7 1.2 43 97-139 20-64 (189)
74 3clo_A Transcriptional regulat 62.0 3.3 0.00011 37.6 2.1 44 100-145 197-240 (258)
75 1oyi_A Double-stranded RNA-bin 62.0 2.3 7.8E-05 31.8 0.8 39 102-142 17-55 (82)
76 1qbj_A Protein (double-strande 61.1 3.7 0.00013 30.4 1.8 38 104-141 12-51 (81)
77 1zyb_A Transcription regulator 60.2 4 0.00014 35.8 2.3 82 58-142 122-211 (232)
78 1zs4_A Regulatory protein CII; 60.2 3.6 0.00012 30.7 1.6 35 108-143 16-50 (83)
79 4dyq_A Gene 1 protein; GP1, oc 60.1 2 6.7E-05 35.4 0.1 34 107-140 18-52 (140)
80 2oz6_A Virulence factor regula 60.0 3.3 0.00011 35.3 1.6 42 101-142 135-189 (207)
81 2zcw_A TTHA1359, transcription 59.6 3.9 0.00013 35.0 2.0 63 101-163 117-193 (202)
82 2x4h_A Hypothetical protein SS 59.5 3.8 0.00013 33.0 1.8 39 105-143 16-57 (139)
83 3b02_A Transcriptional regulat 59.2 4.3 0.00015 34.5 2.2 44 100-143 109-165 (195)
84 2gxg_A 146AA long hypothetical 59.1 5.3 0.00018 32.0 2.7 40 101-142 35-75 (146)
85 4aik_A Transcriptional regulat 58.8 4.3 0.00015 33.4 2.1 42 101-142 29-71 (151)
86 3iwz_A CAP-like, catabolite ac 58.7 4.1 0.00014 35.4 2.0 42 101-142 158-212 (230)
87 2pij_A Prophage PFL 6 CRO; tra 58.5 1.8 6.1E-05 30.1 -0.3 24 114-138 11-34 (67)
88 2q0o_A Probable transcriptiona 58.4 4.2 0.00015 36.2 2.1 46 98-145 173-218 (236)
89 2eth_A Transcriptional regulat 58.3 4.9 0.00017 32.8 2.4 43 100-143 41-84 (154)
90 2fmy_A COOA, carbon monoxide o 58.3 2.5 8.6E-05 36.7 0.5 42 101-142 137-192 (220)
91 3k0l_A Repressor protein; heli 58.2 6.2 0.00021 32.5 3.0 41 101-142 44-85 (162)
92 1l3l_A Transcriptional activat 57.8 5.3 0.00018 35.5 2.6 45 99-145 172-216 (234)
93 1tbx_A ORF F-93, hypothetical 57.5 4.9 0.00017 30.3 2.1 39 104-143 10-52 (99)
94 1y0u_A Arsenical resistance op 57.3 2.8 9.7E-05 31.6 0.6 28 115-142 41-68 (96)
95 3uj3_X DNA-invertase; helix-tu 57.1 2.2 7.6E-05 36.9 0.0 35 106-140 147-181 (193)
96 1sfx_A Conserved hypothetical 56.9 4.5 0.00015 30.6 1.8 37 106-143 24-60 (109)
97 2pg4_A Uncharacterized protein 56.6 4.3 0.00015 30.5 1.6 27 117-143 30-57 (95)
98 2fbh_A Transcriptional regulat 56.6 4.4 0.00015 32.5 1.7 40 104-143 39-78 (146)
99 3bja_A Transcriptional regulat 56.4 6.1 0.00021 31.3 2.6 42 101-143 31-73 (139)
100 3u2r_A Regulatory protein MARR 56.1 7.8 0.00027 32.1 3.3 42 101-142 44-87 (168)
101 2cw1_A SN4M; lambda CRO fold, 55.7 2 7E-05 30.5 -0.4 21 118-138 14-34 (65)
102 3cuo_A Uncharacterized HTH-typ 55.7 2.9 0.0001 31.3 0.5 26 117-142 38-63 (99)
103 2htj_A P fimbrial regulatory p 55.6 5.6 0.00019 29.0 2.0 26 117-142 14-39 (81)
104 3la7_A Global nitrogen regulat 55.3 3.7 0.00013 36.4 1.2 43 101-143 163-219 (243)
105 3bpv_A Transcriptional regulat 54.8 5.7 0.00019 31.5 2.1 41 101-142 27-68 (138)
106 3nrv_A Putative transcriptiona 54.5 5.9 0.0002 31.9 2.2 43 100-143 37-80 (148)
107 1ft9_A Carbon monoxide oxidati 54.5 4 0.00014 35.4 1.2 43 101-143 133-189 (222)
108 2l8n_A Transcriptional repress 54.2 1.3 4.3E-05 31.7 -1.8 22 118-139 10-31 (67)
109 3szt_A QCSR, quorum-sensing co 54.1 4.9 0.00017 35.9 1.7 46 98-145 173-218 (237)
110 2bv6_A MGRA, HTH-type transcri 53.9 6.3 0.00022 31.5 2.3 42 101-143 35-77 (142)
111 1r71_A Transcriptional repress 53.9 3.2 0.00011 35.7 0.5 40 99-138 34-73 (178)
112 2nnn_A Probable transcriptiona 53.8 5.7 0.0002 31.5 2.0 43 100-143 35-78 (140)
113 3jw4_A Transcriptional regulat 53.7 6.8 0.00023 31.6 2.5 43 101-143 39-83 (148)
114 3dkw_A DNR protein; CRP-FNR, H 53.4 4.7 0.00016 34.9 1.5 43 101-143 151-204 (227)
115 3boq_A Transcriptional regulat 53.2 7.5 0.00026 31.7 2.7 43 101-143 45-88 (160)
116 3g3z_A NMB1585, transcriptiona 53.0 5.5 0.00019 32.0 1.8 41 101-142 29-70 (145)
117 2dk5_A DNA-directed RNA polyme 52.9 3.2 0.00011 31.5 0.3 43 100-142 17-61 (91)
118 1on2_A Transcriptional regulat 52.9 4.2 0.00014 32.9 1.0 27 116-142 21-47 (142)
119 3fm5_A Transcriptional regulat 52.7 5.6 0.00019 32.2 1.8 42 101-142 37-79 (150)
120 3kp7_A Transcriptional regulat 52.6 7.4 0.00025 31.5 2.5 41 101-143 36-77 (151)
121 2fbi_A Probable transcriptiona 52.4 5.1 0.00017 31.9 1.5 42 101-143 34-76 (142)
122 1o5l_A Transcriptional regulat 52.3 3 0.0001 36.1 0.0 43 101-143 141-190 (213)
123 4ev0_A Transcription regulator 52.3 3.5 0.00012 35.4 0.5 65 101-165 140-212 (216)
124 1r1t_A Transcriptional repress 52.2 8.6 0.00029 30.5 2.8 28 116-143 58-85 (122)
125 3oop_A LIN2960 protein; protei 52.1 5.9 0.0002 31.8 1.8 43 100-143 34-77 (143)
126 3bro_A Transcriptional regulat 52.0 6.7 0.00023 31.2 2.1 43 101-143 32-76 (141)
127 3jth_A Transcription activator 51.7 2.9 9.8E-05 31.6 -0.2 28 116-143 35-62 (98)
128 3fmy_A HTH-type transcriptiona 51.7 3.2 0.00011 29.6 0.1 26 113-138 20-45 (73)
129 4hbl_A Transcriptional regulat 51.6 6.4 0.00022 31.9 2.0 42 101-143 39-81 (149)
130 3deu_A Transcriptional regulat 51.6 5.7 0.00019 33.1 1.7 44 100-143 50-94 (166)
131 3eco_A MEPR; mutlidrug efflux 51.5 6 0.0002 31.5 1.7 43 101-143 29-73 (139)
132 2rdp_A Putative transcriptiona 51.4 7.1 0.00024 31.4 2.2 42 101-143 40-82 (150)
133 2pex_A Transcriptional regulat 51.3 6.7 0.00023 31.8 2.1 41 101-142 45-86 (153)
134 3pqk_A Biofilm growth-associat 51.1 4 0.00014 31.1 0.6 28 116-143 35-62 (102)
135 3fx3_A Cyclic nucleotide-bindi 50.5 6.6 0.00023 34.3 2.0 44 100-143 151-204 (237)
136 3cdh_A Transcriptional regulat 50.5 8.3 0.00028 31.3 2.5 42 101-143 41-83 (155)
137 2a61_A Transcriptional regulat 50.3 6.4 0.00022 31.5 1.8 42 101-143 31-73 (145)
138 1jgs_A Multiple antibiotic res 50.1 7.6 0.00026 30.7 2.2 42 101-143 32-74 (138)
139 2frh_A SARA, staphylococcal ac 50.1 5.1 0.00018 31.8 1.1 43 101-143 35-79 (127)
140 3cjn_A Transcriptional regulat 50.0 6.3 0.00021 32.4 1.7 41 101-142 50-91 (162)
141 3kcc_A Catabolite gene activat 50.0 5.3 0.00018 35.8 1.3 43 101-143 188-243 (260)
142 2hr3_A Probable transcriptiona 49.9 7.6 0.00026 31.1 2.2 43 101-143 33-76 (147)
143 3n0r_A Response regulator; sig 49.7 9.2 0.00031 35.1 2.9 51 100-151 111-161 (286)
144 2l0k_A Stage III sporulation p 49.6 3.1 0.00011 31.8 -0.3 25 116-140 19-43 (93)
145 2qww_A Transcriptional regulat 49.5 6.6 0.00023 31.8 1.8 42 101-143 39-81 (154)
146 1p6r_A Penicillinase repressor 49.3 5.2 0.00018 29.1 0.9 41 101-142 7-52 (82)
147 3bdd_A Regulatory protein MARR 49.2 7.2 0.00025 30.9 1.9 41 101-142 29-70 (142)
148 3hsr_A HTH-type transcriptiona 49.0 5.7 0.0002 31.9 1.2 42 101-143 34-76 (140)
149 3e6c_C CPRK, cyclic nucleotide 49.0 5.5 0.00019 35.3 1.2 66 100-165 146-226 (250)
150 2fa5_A Transcriptional regulat 48.8 8.2 0.00028 31.6 2.2 42 101-143 47-89 (162)
151 1z91_A Organic hydroperoxide r 48.8 6.9 0.00024 31.4 1.8 43 100-143 37-80 (147)
152 3bj6_A Transcriptional regulat 48.7 7 0.00024 31.6 1.8 41 101-142 38-79 (152)
153 1neq_A DNA-binding protein NER 48.5 4.6 0.00016 29.2 0.5 30 107-138 14-43 (74)
154 2kko_A Possible transcriptiona 48.1 2.3 7.8E-05 33.1 -1.3 37 106-144 29-65 (108)
155 3f6o_A Probable transcriptiona 48.1 3.6 0.00012 32.4 -0.2 29 115-143 29-57 (118)
156 2cyy_A Putative HTH-type trans 48.0 10 0.00035 31.0 2.7 28 116-143 20-47 (151)
157 2g7u_A Transcriptional regulat 47.5 8.1 0.00028 34.9 2.2 43 101-143 10-55 (257)
158 1lj9_A Transcriptional regulat 46.8 5.1 0.00017 32.1 0.6 37 105-142 32-68 (144)
159 1s3j_A YUSO protein; structura 46.0 6.1 0.00021 32.0 1.0 41 101-142 35-76 (155)
160 2fbk_A Transcriptional regulat 45.9 12 0.00041 31.5 2.9 43 101-143 67-112 (181)
161 2nyx_A Probable transcriptiona 45.3 8.2 0.00028 32.1 1.7 41 101-142 43-84 (168)
162 2oqg_A Possible transcriptiona 45.3 6.3 0.00021 30.4 0.9 36 106-143 25-60 (114)
163 3d0s_A Transcriptional regulat 45.1 8.9 0.00031 33.2 2.0 83 58-143 107-203 (227)
164 2bgc_A PRFA; bacterial infecti 45.1 6.3 0.00022 34.6 1.0 65 101-165 138-219 (238)
165 1fx7_A Iron-dependent represso 44.7 7.5 0.00026 34.5 1.4 41 102-142 6-49 (230)
166 3f3x_A Transcriptional regulat 44.5 8.4 0.00029 30.9 1.6 41 101-143 35-76 (144)
167 2w25_A Probable transcriptiona 44.2 11 0.00037 30.8 2.2 36 106-142 11-46 (150)
168 3bd1_A CRO protein; transcript 43.8 3.9 0.00013 29.5 -0.6 23 116-139 11-33 (79)
169 3e6m_A MARR family transcripti 43.6 7.3 0.00025 32.1 1.1 42 101-143 51-93 (161)
170 1rzs_A Antirepressor, regulato 43.6 2.4 8.2E-05 29.4 -1.7 22 117-138 10-31 (61)
171 1ub9_A Hypothetical protein PH 43.5 4.3 0.00015 30.4 -0.4 28 116-143 29-56 (100)
172 1q1h_A TFE, transcription fact 43.4 9.6 0.00033 29.3 1.7 26 117-142 33-58 (110)
173 3e97_A Transcriptional regulat 42.8 7 0.00024 34.0 0.9 42 102-143 146-201 (231)
174 1vz0_A PARB, chromosome partit 42.7 6.5 0.00022 35.2 0.7 41 99-139 116-156 (230)
175 2fu4_A Ferric uptake regulatio 42.6 11 0.00037 27.3 1.8 27 117-143 33-64 (83)
176 2jsc_A Transcriptional regulat 42.6 6.4 0.00022 31.0 0.5 28 115-142 32-59 (118)
177 2cfx_A HTH-type transcriptiona 42.5 12 0.00039 30.5 2.2 27 116-142 18-44 (144)
178 3dn7_A Cyclic nucleotide bindi 42.5 5.2 0.00018 33.7 0.0 42 101-142 149-193 (194)
179 3plo_X DNA-invertase; resolvas 42.4 5.3 0.00018 34.5 0.0 39 107-145 148-186 (193)
180 2hin_A GP39, repressor protein 42.3 4.5 0.00015 29.2 -0.4 21 119-139 12-32 (71)
181 2w48_A Sorbitol operon regulat 42.0 9.8 0.00033 35.5 1.8 34 108-141 12-45 (315)
182 2a6c_A Helix-turn-helix motif; 41.9 4.6 0.00016 29.5 -0.4 27 113-139 27-53 (83)
183 3o9x_A Uncharacterized HTH-typ 41.9 5.7 0.00019 31.8 0.1 27 113-139 80-106 (133)
184 3qp6_A CVIR transcriptional re 41.7 11 0.00038 34.3 2.1 45 99-145 196-240 (265)
185 2pn6_A ST1022, 150AA long hypo 41.6 13 0.00045 30.2 2.4 27 117-143 17-43 (150)
186 1mkm_A ICLR transcriptional re 41.6 7.4 0.00025 35.0 0.9 39 105-143 8-49 (249)
187 1okr_A MECI, methicillin resis 41.5 8.5 0.00029 30.0 1.1 42 101-143 8-54 (123)
188 2xi8_A Putative transcription 41.5 4.1 0.00014 27.7 -0.7 26 114-139 11-36 (66)
189 2ofy_A Putative XRE-family tra 41.5 8.6 0.0003 27.9 1.1 34 106-139 16-49 (86)
190 3qq6_A HTH-type transcriptiona 41.5 4.4 0.00015 29.2 -0.5 47 111-168 17-63 (78)
191 2gau_A Transcriptional regulat 41.5 13 0.00043 32.3 2.4 64 101-164 151-228 (232)
192 1u2w_A CADC repressor, cadmium 41.3 7.9 0.00027 30.6 0.9 28 116-143 55-82 (122)
193 2dbb_A Putative HTH-type trans 41.1 14 0.00047 30.2 2.4 27 116-142 22-48 (151)
194 2hzt_A Putative HTH-type trans 41.0 8.5 0.00029 29.6 1.0 29 115-143 25-54 (107)
195 2zkz_A Transcriptional repress 40.7 3.6 0.00012 31.4 -1.2 40 105-144 28-68 (99)
196 1zug_A Phage 434 CRO protein; 40.6 4.3 0.00015 28.1 -0.7 26 114-139 13-38 (71)
197 3kz3_A Repressor protein CI; f 40.5 4.1 0.00014 29.4 -0.9 25 115-139 23-47 (80)
198 2cg4_A Regulatory protein ASNC 40.4 14 0.00047 30.2 2.3 28 116-143 21-48 (152)
199 1r69_A Repressor protein CI; g 40.3 4.4 0.00015 27.9 -0.7 26 114-139 11-36 (69)
200 3eus_A DNA-binding protein; st 40.3 5 0.00017 29.5 -0.4 32 107-138 15-48 (86)
201 2ovg_A Phage lambda CRO; trans 40.2 2.5 8.6E-05 30.0 -2.0 22 118-139 14-35 (66)
202 4b8x_A SCO5413, possible MARR- 40.1 11 0.00037 30.7 1.6 42 101-142 33-76 (147)
203 3s2w_A Transcriptional regulat 40.0 6.5 0.00022 32.2 0.2 38 105-143 53-90 (159)
204 1i1g_A Transcriptional regulat 39.5 11 0.00038 30.2 1.6 28 116-143 17-44 (141)
205 3nqo_A MARR-family transcripti 39.4 12 0.00041 31.9 1.8 42 101-142 39-82 (189)
206 1xwr_A Regulatory protein CII; 39.3 12 0.00039 28.8 1.5 32 111-143 18-49 (97)
207 4ham_A LMO2241 protein; struct 39.2 18 0.0006 29.1 2.8 40 101-140 13-61 (134)
208 2wiu_B HTH-type transcriptiona 38.9 6 0.0002 28.8 -0.2 26 114-139 22-47 (88)
209 3f6v_A Possible transcriptiona 38.6 6.9 0.00024 32.5 0.2 30 115-144 69-98 (151)
210 2o20_A Catabolite control prot 38.4 6.6 0.00023 36.4 0.0 23 118-140 6-28 (332)
211 3omt_A Uncharacterized protein 38.3 4.6 0.00016 28.4 -0.9 42 115-168 19-60 (73)
212 3ctp_A Periplasmic binding pro 38.3 6.7 0.00023 36.3 0.0 22 119-140 4-25 (330)
213 2b5a_A C.BCLI; helix-turn-heli 38.3 5 0.00017 28.4 -0.7 26 114-139 20-45 (77)
214 4ghj_A Probable transcriptiona 37.6 5.6 0.00019 30.7 -0.5 34 105-138 35-70 (101)
215 2o0y_A Transcriptional regulat 37.5 12 0.00041 33.8 1.6 43 101-143 19-64 (260)
216 3bil_A Probable LACI-family tr 37.4 7 0.00024 36.6 0.0 22 119-140 10-31 (348)
217 2g9w_A Conserved hypothetical 37.2 11 0.00037 30.5 1.1 42 101-142 7-53 (138)
218 3h5o_A Transcriptional regulat 37.2 7.1 0.00024 36.3 0.0 23 118-140 5-27 (339)
219 2p5v_A Transcriptional regulat 37.0 15 0.00053 30.3 2.1 27 116-142 23-49 (162)
220 3jvd_A Transcriptional regulat 36.8 7.3 0.00025 36.3 0.0 23 118-140 7-29 (333)
221 2ia0_A Putative HTH-type trans 36.8 16 0.00055 30.7 2.2 42 100-142 14-56 (171)
222 1jye_A Lactose operon represso 36.4 7.4 0.00025 36.4 0.0 22 119-140 5-26 (349)
223 2ek5_A Predicted transcription 36.3 8.6 0.0003 31.0 0.4 22 119-140 30-51 (129)
224 3dbi_A Sugar-binding transcrip 36.3 7.5 0.00026 36.1 0.0 22 119-140 5-26 (338)
225 3b7h_A Prophage LP1 protein 11 36.1 6.1 0.00021 27.9 -0.5 44 114-168 17-60 (78)
226 2kpj_A SOS-response transcript 35.7 7.5 0.00025 29.0 -0.1 42 115-168 20-61 (94)
227 2p5k_A Arginine repressor; DNA 35.5 13 0.00045 25.2 1.2 35 105-139 5-46 (64)
228 2r1j_L Repressor protein C2; p 35.5 5.1 0.00018 27.4 -1.0 25 115-139 16-40 (68)
229 3e3m_A Transcriptional regulat 35.5 7.8 0.00027 36.3 0.0 22 119-140 14-35 (355)
230 2fxa_A Protease production reg 35.4 14 0.00047 32.1 1.6 42 100-142 45-87 (207)
231 1y7y_A C.AHDI; helix-turn-heli 35.4 5.9 0.0002 27.6 -0.7 25 115-139 24-48 (74)
232 2xrn_A HTH-type transcriptiona 35.4 10 0.00036 33.8 0.8 39 105-143 6-47 (241)
233 3s8q_A R-M controller protein; 35.1 6.4 0.00022 28.3 -0.5 26 113-138 20-45 (82)
234 2ia2_A Putative transcriptiona 35.0 13 0.00046 33.6 1.5 43 101-143 17-62 (265)
235 1x57_A Endothelial differentia 34.9 16 0.00054 26.8 1.7 45 112-168 21-65 (91)
236 1sfu_A 34L protein; protein/Z- 34.8 22 0.00074 25.9 2.2 39 102-140 12-52 (75)
237 2wte_A CSA3; antiviral protein 34.6 16 0.00053 33.0 1.9 29 115-143 164-192 (244)
238 1yyv_A Putative transcriptiona 34.2 12 0.0004 30.2 0.9 28 116-143 47-75 (131)
239 1qpz_A PURA, protein (purine n 34.2 6.7 0.00023 36.5 -0.7 21 119-139 2-22 (340)
240 2k9q_A Uncharacterized protein 33.7 5.4 0.00019 28.4 -1.2 27 113-139 11-37 (77)
241 2f2e_A PA1607; transcription f 33.7 11 0.00039 30.8 0.7 28 116-143 36-63 (146)
242 3bs3_A Putative DNA-binding pr 33.3 6.7 0.00023 27.6 -0.7 43 114-168 20-62 (76)
243 2ppx_A AGR_C_3184P, uncharacte 33.2 7.3 0.00025 29.4 -0.5 26 113-138 39-64 (99)
244 3f6w_A XRE-family like protein 32.8 6.2 0.00021 28.4 -1.0 26 114-139 24-49 (83)
245 2e1c_A Putative HTH-type trans 32.8 20 0.0007 30.1 2.2 27 116-142 40-66 (171)
246 1adr_A P22 C2 repressor; trans 32.5 5.8 0.0002 27.8 -1.2 25 115-139 16-40 (76)
247 3kjx_A Transcriptional regulat 32.5 7.2 0.00025 36.4 -0.8 21 119-139 12-32 (344)
248 2ewt_A BLDD, putative DNA-bind 32.5 9.1 0.00031 26.4 -0.1 42 115-168 19-62 (71)
249 2hsg_A Glucose-resistance amyl 32.5 6.5 0.00022 36.4 -1.1 21 119-139 4-24 (332)
250 1z7u_A Hypothetical protein EF 32.5 18 0.00061 28.0 1.7 35 107-143 27-62 (112)
251 2qq9_A Diphtheria toxin repres 32.1 12 0.00042 33.0 0.7 39 104-142 8-49 (226)
252 3trb_A Virulence-associated pr 32.0 7.1 0.00024 30.2 -0.8 39 100-139 11-49 (104)
253 2gqq_A Leucine-responsive regu 31.6 40 0.0014 27.8 3.9 27 116-142 26-52 (163)
254 1pdn_C Protein (PRD paired); p 31.4 44 0.0015 25.5 3.9 78 59-140 35-126 (128)
255 3r4k_A Transcriptional regulat 31.1 17 0.00057 32.9 1.4 40 104-143 5-47 (260)
256 2ef8_A C.ECOT38IS, putative tr 31.0 8.3 0.00028 27.7 -0.5 25 115-139 21-45 (84)
257 1a04_A Nitrate/nitrite respons 30.9 13 0.00045 31.7 0.7 44 100-145 154-197 (215)
258 2vn2_A DNAD, chromosome replic 30.9 21 0.00073 28.4 1.9 26 118-143 52-77 (128)
259 2h09_A Transcriptional regulat 30.7 15 0.00053 29.9 1.0 28 116-143 53-80 (155)
260 4fx0_A Probable transcriptiona 30.6 21 0.00073 29.0 1.9 42 101-142 31-77 (148)
261 2ict_A Antitoxin HIGA; helix-t 30.6 8.7 0.0003 28.5 -0.5 36 102-139 8-43 (94)
262 3ic7_A Putative transcriptiona 30.2 33 0.0011 27.2 3.0 23 119-141 37-59 (126)
263 2di3_A Bacterial regulatory pr 30.1 20 0.00069 31.6 1.8 20 121-140 32-51 (239)
264 2fsw_A PG_0823 protein; alpha- 30.0 14 0.00048 28.3 0.6 29 115-143 36-65 (107)
265 3t76_A VANU, transcriptional r 29.9 8.9 0.0003 28.7 -0.5 43 113-168 33-75 (88)
266 1lmb_3 Protein (lambda repress 29.7 5.9 0.0002 29.2 -1.6 26 114-139 27-52 (92)
267 3h5t_A Transcriptional regulat 29.5 8.1 0.00028 36.3 -1.0 21 119-139 11-31 (366)
268 2obp_A Putative DNA-binding pr 29.4 17 0.00057 27.8 0.9 37 106-142 20-61 (96)
269 2p5t_A Putative transcriptiona 29.4 11 0.00039 31.1 0.0 25 114-138 11-35 (158)
270 1nr3_A MTH0916, DNA-binding pr 29.2 12 0.00041 29.6 0.1 25 116-140 4-28 (122)
271 2eby_A Putative HTH-type trans 29.0 8.8 0.0003 29.6 -0.7 27 113-139 20-46 (113)
272 1gdt_A GD resolvase, protein ( 28.7 9.9 0.00034 32.3 -0.5 28 112-139 153-180 (183)
273 1xn7_A Hypothetical protein YH 28.6 22 0.00075 25.9 1.4 25 117-141 16-40 (78)
274 2b0l_A GTP-sensing transcripti 28.4 12 0.00041 28.8 -0.0 31 112-142 35-68 (102)
275 3hrs_A Metalloregulator SCAR; 27.9 21 0.00072 31.2 1.5 38 105-142 5-45 (214)
276 3cec_A Putative antidote prote 27.8 8.5 0.00029 29.2 -1.0 26 114-139 28-53 (104)
277 3cta_A Riboflavin kinase; stru 27.6 20 0.00068 31.6 1.3 27 117-143 27-53 (230)
278 3kxa_A NGO0477 protein, putati 27.2 13 0.00043 30.4 -0.1 27 113-139 77-103 (141)
279 3bdn_A Lambda repressor; repre 27.2 20 0.00069 31.4 1.3 34 107-140 18-53 (236)
280 3m8j_A FOCB protein; all-alpha 26.9 44 0.0015 26.1 3.0 56 68-141 29-84 (111)
281 3g5g_A Regulatory protein; tra 26.8 11 0.00037 28.6 -0.5 26 114-139 38-63 (99)
282 2l49_A C protein; P2 bacteriop 26.8 11 0.00038 28.1 -0.5 27 113-139 13-39 (99)
283 2r0q_C Putative transposon TN5 26.7 16 0.00055 31.7 0.5 28 112-139 170-197 (209)
284 1sd4_A Penicillinase repressor 26.6 26 0.00088 27.2 1.7 42 101-143 8-54 (126)
285 3i4p_A Transcriptional regulat 26.4 33 0.0011 28.3 2.4 26 117-142 17-42 (162)
286 3c3w_A Two component transcrip 26.4 15 0.0005 31.9 0.2 44 100-145 149-192 (225)
287 1j5y_A Transcriptional regulat 26.3 29 0.001 29.5 2.1 26 117-142 36-61 (187)
288 3tqn_A Transcriptional regulat 26.1 21 0.00072 27.7 1.0 24 119-142 35-58 (113)
289 3mq0_A Transcriptional repress 26.0 26 0.00088 31.9 1.8 44 100-143 25-71 (275)
290 3dtp_E RLC, myosin regulatory 25.8 35 0.0012 28.7 2.6 26 101-127 74-99 (196)
291 1v4r_A Transcriptional repress 25.7 15 0.00052 27.8 0.1 21 119-139 37-57 (102)
292 1b0n_A Protein (SINR protein); 25.6 11 0.00038 28.7 -0.7 45 113-168 10-54 (111)
293 3op9_A PLI0006 protein; struct 25.4 12 0.0004 28.9 -0.6 44 113-168 18-61 (114)
294 1uly_A Hypothetical protein PH 24.9 24 0.00081 30.4 1.2 35 106-142 24-58 (192)
295 3vk0_A NHTF, transcriptional r 24.7 13 0.00043 28.8 -0.5 36 103-138 18-55 (114)
296 3df8_A Possible HXLR family tr 24.7 28 0.00095 26.9 1.5 33 111-143 33-69 (111)
297 1yio_A Response regulatory pro 24.6 18 0.00063 30.5 0.5 43 101-145 143-185 (208)
298 2jvl_A TRMBF1; coactivator, he 24.5 16 0.00055 28.0 0.1 24 115-138 47-70 (107)
299 1k78_A Paired box protein PAX5 24.5 1E+02 0.0035 24.5 5.1 78 59-140 50-141 (149)
300 3mlf_A Transcriptional regulat 24.3 15 0.00051 28.5 -0.2 27 113-139 32-58 (111)
301 2o38_A Hypothetical protein; a 23.8 14 0.00046 29.3 -0.5 27 113-139 49-75 (120)
302 2qlz_A Transcription factor PF 23.7 32 0.0011 30.7 1.9 27 116-142 24-50 (232)
303 3neu_A LIN1836 protein; struct 23.5 17 0.00058 28.9 -0.0 23 120-142 40-62 (125)
304 2k4b_A Transcriptional regulat 23.2 14 0.00048 28.3 -0.6 38 104-142 37-78 (99)
305 1z4h_A TORI, TOR inhibition pr 22.8 14 0.00048 25.7 -0.5 21 120-140 13-33 (66)
306 1wi9_A Protein C20ORF116 homol 22.8 32 0.0011 24.8 1.3 16 210-225 51-66 (72)
307 3ivp_A Putative transposon-rel 22.5 17 0.00058 28.5 -0.2 44 113-168 21-64 (126)
308 3lsg_A Two-component response 22.4 48 0.0016 24.7 2.5 73 57-141 19-93 (103)
309 1rr7_A Middle operon regulator 22.2 18 0.00062 29.2 -0.1 28 116-143 91-118 (129)
310 3c19_A Uncharacterized protein 22.2 63 0.0022 27.7 3.3 28 178-216 38-65 (186)
311 2auw_A Hypothetical protein NE 22.2 13 0.00045 31.6 -1.0 28 111-138 97-124 (170)
312 2k02_A Ferrous iron transport 21.9 23 0.0008 26.5 0.5 24 117-140 16-39 (87)
313 2o0m_A Transcriptional regulat 21.9 19 0.00065 34.0 0.0 36 106-142 24-59 (345)
314 3f52_A CLP gene regulator (CLG 21.9 14 0.00047 28.6 -0.9 37 102-138 24-62 (117)
315 3k2z_A LEXA repressor; winged 21.7 35 0.0012 29.1 1.7 24 117-140 24-47 (196)
316 2wus_R RODZ, putative uncharac 21.7 18 0.00063 28.2 -0.1 27 113-139 16-42 (112)
317 2h8r_A Hepatocyte nuclear fact 21.1 13 0.00046 32.9 -1.2 31 109-139 36-66 (221)
318 3by6_A Predicted transcription 20.9 20 0.0007 28.5 -0.0 23 119-141 37-59 (126)
319 1z6r_A MLC protein; transcript 20.4 43 0.0015 32.0 2.2 29 115-143 28-56 (406)
320 3klo_A Transcriptional regulat 20.2 25 0.00085 30.3 0.4 42 100-143 159-200 (225)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.04 E-value=0.0089 Score=39.49 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=33.1
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..++.+++..+... +..|.++..||..+|||.+||++++.+
T Consensus 4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 45788877666554 467899999999999999999988754
No 2
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.61 E-value=0.021 Score=44.86 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHH
Q 015682 68 RVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALE 146 (402)
Q Consensus 68 Rms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~ 146 (402)
||+.+.|+.+...+ . ++ +..+-++=.|+-.|.++.+|+..+|||++||++.+.+.-+...
T Consensus 4 rmT~~eFe~~~~~l----~--------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGL----E--------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTC----C--------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccC----C--------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 79999999987544 1 22 2446667778889999999999999999999999998877654
No 3
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.27 E-value=0.016 Score=40.55 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=37.2
Q ss_pred CCcCCHHHHHHHHhhhccCCCc----cccccccccccccchhhhHHHH
Q 015682 98 GRLLSVEKQVAIALRRLASGES----QVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 98 ~~~ls~e~~l~i~L~~La~g~s----~~~l~~~fgvs~sTv~~~i~~v 141 (402)
++..|+|.++.+ +.++..|.+ ...++..|||+.+|+++++...
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 356899999998 778888888 9999999999999999988654
No 4
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.01 E-value=0.0088 Score=46.94 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHhhhc-----cCC-CccccccccccccccchhhhHHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRL-----ASG-ESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 100 ~ls~e~~l~i~L~~L-----a~g-~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
.+++.++-++.++|- ..| .+|+.|+...|+|.|||||+ .+.+..+..
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~ 87 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPV 87 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccH
Confidence 477888877766643 356 99999999999999999999 666665533
No 5
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=93.83 E-value=0.024 Score=43.79 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=37.8
Q ss_pred CcCCHHHHHHHHhhhccC-CCccccccccccccccchhhhHHHH
Q 015682 99 RLLSVEKQVAIALRRLAS-GESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~-g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
+..|++.++.+.-.++.. |.+...++..||||.+|+++++.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 458899999888888877 9999999999999999999988754
No 6
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.43 E-value=0.034 Score=39.88 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHhhh-c--cCCCccccccccccccccchhhhHHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRR-L--ASGESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 100 ~ls~e~~l~i~L~~-L--a~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
.+|+.++-++.|+| | ..|.++.+||..+|+|.+||...+.+....|..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 48999999999988 3 579999999999999999999999888776643
No 7
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.35 E-value=0.047 Score=41.32 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHhhh-cc--CCCccccccccccccccchhhhHHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRR-LA--SGESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 100 ~ls~e~~l~i~L~~-La--~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
.+|+.++-++.|+| |. .|.++..||..+|+|.+||..++.+....|..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 37889999999988 45 78999999999999999999999988877744
No 8
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=93.08 E-value=0.057 Score=39.28 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHhhhc-c--CCCccccccccccccccchhhhHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRL-A--SGESQVSVGVAFGVGQSTVSQVTWRFIEALE 146 (402)
Q Consensus 100 ~ls~e~~l~i~L~~L-a--~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~ 146 (402)
.+|+.++-++.|+|. . .|.++.+||..+|+|.+||..+..+....|.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 489999999999884 3 6899999999999999999999999888886
No 9
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=92.92 E-value=0.057 Score=38.54 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHh
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEER 148 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~ 148 (402)
.+|+.++-++.|+|+ .|.++..||..+|+|.+||.+.+++....|...
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 378888888888775 589999999999999999999999988877553
No 10
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.58 E-value=0.075 Score=40.54 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhh
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERA 149 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~ 149 (402)
+|..++-++.|+|+ .|.++..||..+|||.+||...+.+....|.+.+
T Consensus 38 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 78888888888775 6899999999999999999999999888876543
No 11
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=92.36 E-value=0.12 Score=40.26 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCHHHHHHHHhhhc---cCCCccccccccccccccchhhhHHHHHHHHHHh
Q 015682 101 LSVEKQVAIALRRL---ASGESQVSVGVAFGVGQSTVSQVTWRFIEALEER 148 (402)
Q Consensus 101 ls~e~~l~i~L~~L---a~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~ 148 (402)
+|+.++-++.|+|. ..|.++..||..+|+|.+||..+..+.+..|...
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 88899999999986 3689999999999999999999999988888653
No 12
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=91.61 E-value=0.068 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.0
Q ss_pred CChhhhhcccCCCHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICS 79 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~ 79 (402)
++|++|...|+|+|+.|..|-.
T Consensus 1 Lsd~dF~~vFgmsr~eF~~LP~ 22 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANLPL 22 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHSCH
T ss_pred CCHHHHHHHHCCCHHHHHHCcH
Confidence 3689999999999999988643
No 13
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.50 E-value=0.067 Score=40.53 Aligned_cols=45 Identities=27% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 98 GRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 98 ~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++..+.+.+..+.-.+ ..|.+...++..||||++|+++++.+.-.
T Consensus 20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3467888876665544 57899999999999999999999876554
No 14
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=90.96 E-value=0.11 Score=40.22 Aligned_cols=45 Identities=4% Similarity=-0.003 Sum_probs=40.3
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
..+..+.+.++.|++..+..+.+..+++..|+||.+++..+...+
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 445589999999999999999999999999999999998887655
No 15
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=90.89 E-value=0.087 Score=33.19 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.1
Q ss_pred CChhhhhcccCCCHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICS 79 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~ 79 (402)
++|++|...|+|+|+.|..|-.
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP~ 24 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALPG 24 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4789999999999999988643
No 16
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=90.59 E-value=0.15 Score=42.57 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=39.9
Q ss_pred ccCCcCCHHHHHHHHhhh--ccCCCccccccc----cc--cccccchhhhHHHHHH
Q 015682 96 IEGRLLSVEKQVAIALRR--LASGESQVSVGV----AF--GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 96 ~~~~~ls~e~~l~i~L~~--La~g~s~~~l~~----~f--gvs~sTv~~~i~~v~~ 143 (402)
..+..++.++++.|..++ -..+.++.+|+. .| +||+|||++++..=-.
T Consensus 7 ~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 356789999999999998 445578889999 99 9999999999976443
No 17
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=90.20 E-value=0.053 Score=35.98 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
++.++.. ..+..+..|.+...++..+|||++||++++.
T Consensus 6 ~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4444332 2233356789999999999999999988764
No 18
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.14 E-value=0.13 Score=42.71 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=38.7
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.++.+.+..|...+ ..|.+...+|..||||.+||++++.++..
T Consensus 29 ~~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TTSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34568999988887666 57999999999999999999999987654
No 19
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.96 E-value=0.15 Score=40.65 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=36.9
Q ss_pred CCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 98 GRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 98 ~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
++.++.+.+..+...+ ..|.+...++..||||.+||++++.++.
T Consensus 15 ~~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568888887776655 5899999999999999999999988764
No 20
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=89.41 E-value=0.22 Score=35.76 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=37.8
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..+++.++-++.+ +..|.++.++|..+|+|.+||+..+.+....+
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3578878776666 37899999999999999999999998877666
No 21
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=89.23 E-value=0.22 Score=42.80 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=44.1
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhccc
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHH 152 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~ 152 (402)
+|+.++-++.|+++ .|.++..||..+|+|.+||...+.+....|.+.+..+
T Consensus 141 L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 141 LPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp SCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888988888887 5899999999999999999999999998887765543
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=89.07 E-value=0.22 Score=39.75 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhh
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERA 149 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~ 149 (402)
+|+.++-++.|+|+ .|.++..+|..+|+|.+||...+.+....|...+
T Consensus 23 L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 77778777777654 6899999999999999999999999888886654
No 23
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=88.75 E-value=0.19 Score=37.52 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=38.3
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..++..++-++.| + ..|.++.+||..+|+|.+||...+.+....|
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3588888877777 3 7899999999999999999999988877665
No 24
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.68 E-value=0.16 Score=41.16 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=39.5
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccc-cccccccccccchhhhHHHHHHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQV-SVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~-~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
.++.++.|.++.+.-.+...|.+.. ++|..|||+++|++++++..-...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 3567999999988777667777765 899999999999999998755443
No 25
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=88.62 E-value=0.25 Score=43.81 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhc
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAK 150 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~ 150 (402)
.+|+.++-++.|+|+ .|.++..||..+|||.+||...+.+....|.+.+.
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999886 58999999999999999999999999888866543
No 26
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.44 E-value=0.29 Score=38.94 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhc
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAK 150 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~ 150 (402)
+|+.++-++.|+|+ .|.++..+|..+|+|.+||...+++....|...+.
T Consensus 26 L~~~~r~vl~l~~~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 26 LTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp SCHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 77778877777664 68999999999999999999999999888866543
No 27
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.39 E-value=0.13 Score=41.99 Aligned_cols=42 Identities=7% Similarity=-0.035 Sum_probs=35.0
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
..++.+++..|...+ ..|.+...++..||||.+||++++.++
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 468888887766554 689999999999999999999988754
No 28
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=88.04 E-value=0.15 Score=39.29 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=44.4
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccccccccc-cccccchhhhHHHHHHHHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQVSVGVAF-GVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~~l~~~f-gvs~sTv~~~i~~v~~al~~ 147 (402)
+.+.+...-|+++.|.+--+|.|+..||..| |..+|||...+.++-+.+.+
T Consensus 26 R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 26 RSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4456777889999999999999999999999 89999999999888877643
No 29
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=88.02 E-value=0.25 Score=37.94 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
.++..++-++.|+ ..|.++..||..+|+|.+||...+.+....|..
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4788888777774 889999999999999999999999888877643
No 30
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=87.84 E-value=0.51 Score=40.10 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHh
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEER 148 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~ 148 (402)
+|+.++-++.|+++ .|.++..||..+|+|.+||...+.+....|.+.
T Consensus 136 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 78889988888776 589999999999999999999999888877543
No 31
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=87.29 E-value=0.12 Score=40.64 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=36.5
Q ss_pred CcCCHHHHHHHHhhhccCC-------CccccccccccccccchhhhHHHH
Q 015682 99 RLLSVEKQVAIALRRLASG-------ESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g-------~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
+..|++.++.+.-.++..| .+...++..||||.+|+++++...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4688999998887777765 799999999999999999888654
No 32
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=86.85 E-value=0.16 Score=34.41 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=29.5
Q ss_pred cCC--HHHHHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 100 LLS--VEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 100 ~ls--~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.++ ++..-.+... +..|.++.++|..+|||++||++++.
T Consensus 13 ~l~~~~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355 5554444433 46899999999999999999998864
No 33
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=86.56 E-value=0.46 Score=36.86 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=38.1
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..+|+.++-++.| +..|.++.+||..+|||.+||...+.+....|
T Consensus 33 ~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 33 KRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4588888776665 45899999999999999999999998887766
No 34
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=86.51 E-value=0.26 Score=35.98 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
+|+.++-++.| + ..|.++.+||..+|+|.+||...+.+....+
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56667777766 3 7899999999999999999999888877655
No 35
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.17 E-value=0.22 Score=34.40 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=29.0
Q ss_pred ccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
+..|.++.++|..+|+|.+||...+.+....+
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998887766
No 36
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.53 E-value=0.33 Score=40.74 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=35.3
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+++.++.+.+..|...+ ..|.+...++..||||++||++++.+
T Consensus 22 ~~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 22 NGRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34568888887776655 57999999999999999999988754
No 37
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=85.04 E-value=0.32 Score=36.88 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
.+|+.++-++.|+ ..|.++..||..+|+|.+||...+.+....|
T Consensus 29 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3677777777773 7899999999999999999999988877655
No 38
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=83.81 E-value=0.39 Score=34.60 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.2
Q ss_pred CChhhhhcccCCCHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICS 79 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~ 79 (402)
++|++|...|+|+++.|..|-.
T Consensus 34 LsdedF~~vFgmsr~eF~~LP~ 55 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLAL 55 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4789999999999999988744
No 39
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=83.41 E-value=0.5 Score=39.08 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhc
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAK 150 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~ 150 (402)
+|+.++-++. ++ -.|.++..||..+|||.+||...+.+....|.+.+.
T Consensus 110 L~~~~r~v~~-~~-~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLT-YL-IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHH-HH-TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776 44 479999999999999999999999998888866543
No 40
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=82.56 E-value=0.4 Score=37.44 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=44.2
Q ss_pred cCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHH
Q 015682 97 EGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
+.+.+...-|+|+.|.+=-++.|+..||..||..+|||...+.++-+.+.+
T Consensus 30 R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 30 KTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 344677788999999888899999999999999999999999888887754
No 41
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=82.09 E-value=0.63 Score=35.33 Aligned_cols=45 Identities=9% Similarity=0.133 Sum_probs=36.4
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..++..++-++.|. +.|.++..||..+|||.+||...+.+....+
T Consensus 28 ~~Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45787777665553 4999999999999999999999998877655
No 42
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=81.85 E-value=0.6 Score=39.03 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhc
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAK 150 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~ 150 (402)
.+|+.++-++.|+++. |.++..||..+|||.+||...+.+....|.+.+.
T Consensus 93 ~Lp~~~r~vl~L~~~~-g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTAME-GFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTSSS-CCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887764 8999999999999999999999999988876554
No 43
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=81.28 E-value=0.43 Score=34.21 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.1
Q ss_pred CChhhhhcccCCCHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICS 79 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~ 79 (402)
++|++|...|+|+++.|..|-.
T Consensus 33 LsdedF~~vFgms~~eF~~LP~ 54 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLPL 54 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4789999999999999987644
No 44
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=80.62 E-value=1.5 Score=35.43 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=49.6
Q ss_pred ChhhhhcccCCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccCCCcccccccccc--ccccchhh
Q 015682 59 EEEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFG--VGQSTVSQ 136 (402)
Q Consensus 59 ~~~~F~~~fRms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fg--vs~sTv~~ 136 (402)
+-.+--..|++|+.|+...+.......... .+ ...+.+++++...+.-.....+.+...|+..+| +|.+||++
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~-~~----gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSK-RA----PRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILN 98 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCC-CC----CCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcC-CC----CCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHH
Confidence 345556778999999988877654332211 11 233457776654443223333478888999888 79999999
Q ss_pred hHHH
Q 015682 137 VTWR 140 (402)
Q Consensus 137 ~i~~ 140 (402)
++.+
T Consensus 99 ~l~~ 102 (141)
T 1u78_A 99 VIKR 102 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 45
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=80.14 E-value=0.45 Score=34.16 Aligned_cols=22 Identities=9% Similarity=0.412 Sum_probs=18.8
Q ss_pred CChhhhhcccCCCHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICS 79 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~ 79 (402)
++|++|...|+|+++.|..|-.
T Consensus 33 LsdedF~~vFgmsr~eF~~LP~ 54 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALPA 54 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHCcH
Confidence 4789999999999999987643
No 46
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=78.28 E-value=0.69 Score=36.33 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.7
Q ss_pred hhccCCCccccccccccccccchhhhHH
Q 015682 112 RRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 112 ~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|..|.+|+.|+...|+|.+||+|+-+
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 3588999999999999999999998654
No 47
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=77.79 E-value=17 Score=33.91 Aligned_cols=165 Identities=10% Similarity=0.023 Sum_probs=88.1
Q ss_pred hhhhcccC---CCHHHHHHHHHHHhcc---ccCCCCCCCccccCCcCCHHHHHHHHhhhccCCCccccccccccccccch
Q 015682 61 EGFKYFFR---VSKKTFDYICSLVRED---LVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTV 134 (402)
Q Consensus 61 ~~F~~~fR---ms~~tF~~L~~~l~~~---~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv 134 (402)
..+-+.|+ +++.|+...+...+.. +..++.+| +.+.++.+. |.-.+ .-....+++.|+..++||.+||
T Consensus 30 ~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~g----rp~~~~~~~-i~~~v-~~~~~~t~~~ia~~l~vs~~tV 103 (345)
T 3hot_A 30 RMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGK----PPKRYEDAE-LQALL-DEDDAQTQKQLAEQLEVSQQAV 103 (345)
T ss_dssp HHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCC----CCCSSCHHH-HHHHH-HHCSCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCC----CCCcccHHH-HHHHH-HhCccchHHHHHHHHCCCHHHH
Confidence 45666788 9999999998876542 22222222 223455433 32222 3344567888999999999999
Q ss_pred hhhHHHHHHHHHHhhcccccCC---Cchh---HHHHHHHHHH---hhCCCCcccccceeEEEEecCCCCCCCcccc----
Q 015682 135 SQVTWRFIEALEERAKHHLKWP---DSNR---MEEIKSKFEE---SFGLLNCCGAIDATHIIMTLPAVQTSDDWCD---- 201 (402)
Q Consensus 135 ~~~i~~v~~al~~~~~~~i~~P---~~~~---~~~i~~~f~~---~~~fp~~iGaIDgthI~i~~P~~~~~~~y~~---- 201 (402)
++++++. -+..... ...| +... ..+.+...-. ...+++-+-++|-|.+....+.. ...|..
T Consensus 104 ~r~L~~~--g~~~k~~--~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~--~~~w~~~g~~ 177 (345)
T 3hot_A 104 SNRLREM--GKIQKVG--RWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKR--KKSYVDPGQP 177 (345)
T ss_dssp HHHHHHT--TCEEEEC--CEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCC--CEEEECSSSC
T ss_pred HHHHHHh--CCeeecc--ccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccc--eeeeccCCCC
Confidence 9888762 1111111 1123 2211 1122222211 12467788899999988642211 111111
Q ss_pred -------CCCceeeeEeeeeCCCceEEeeeccCCCcccchhhhh
Q 015682 202 -------QENNYSMLVQGIVDHEMRFIDIVTGWPGGMNVSRLLK 238 (402)
Q Consensus 202 -------~k~~~s~~~q~vvD~~~rf~~v~~g~pGs~~D~~v~~ 238 (402)
..+..++.+.+++|..|.+.+..+...|+++ +..+.
T Consensus 178 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~y~ 220 (345)
T 3hot_A 178 ATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVN-AARYQ 220 (345)
T ss_dssp CCCEECCCTTCCEEEEEEEEESSSEEEEEEECSSCCCC-HHHHH
T ss_pred CCCCcCccCcCCcEEEEEEEcccCceeeEecCCCCccc-HHHHH
Confidence 1122366678888999976665553233443 44443
No 48
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=77.47 E-value=0.47 Score=42.04 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEA 144 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~a 144 (402)
.+|+.++-++.|+|+ .|.++..||..+|||.+||...+.+....
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ---------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478888888888876 68999999999999999999888776654
No 49
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=74.39 E-value=0.63 Score=35.20 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.6
Q ss_pred CChhhhhcccCCCHHHHHHHHHH
Q 015682 58 DEEEGFKYFFRVSKKTFDYICSL 80 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~~ 80 (402)
++|++|...|+|+++.|..|-..
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~W 70 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLALW 70 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 46889999999999999887543
No 50
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=73.50 E-value=0.86 Score=36.51 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHhhhccCCCccccccccccccccchhhhHH
Q 015682 108 AIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 108 ~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.-.+..|+.|.+|+.|+...|+|.+||+++-+
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44566789999999999999999999998543
No 51
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=71.95 E-value=1.8 Score=42.77 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhhh-cc--CCCccccccccccccccchhhhHHHHHHHHH
Q 015682 101 LSVEKQVAIALRR-LA--SGESQVSVGVAFGVGQSTVSQVTWRFIEALE 146 (402)
Q Consensus 101 ls~e~~l~i~L~~-La--~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~ 146 (402)
++..++-++.|+| |. .|.++..||..+|||..||.++..+.+..|.
T Consensus 376 L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888999999998 54 5789999999999999999999999888875
No 52
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=71.34 E-value=3.2 Score=33.40 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=28.0
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|.. ..+.+..+|+..+|++++|+++++.+..+
T Consensus 35 lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 35 LTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55555 44444443 44789999999999999999998876654
No 53
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=71.22 E-value=2.1 Score=42.15 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=37.4
Q ss_pred CCHHHHHHHHhhh-cc--CCCccccccccccccccchhhhHHHHHHHHH
Q 015682 101 LSVEKQVAIALRR-LA--SGESQVSVGVAFGVGQSTVSQVTWRFIEALE 146 (402)
Q Consensus 101 ls~e~~l~i~L~~-La--~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~ 146 (402)
+|+.++-++.|+| |. .|.++..||..||||..||..+..+....|.
T Consensus 361 L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888999999998 55 5689999999999999999999999888886
No 54
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.09 E-value=1.7 Score=33.14 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.7
Q ss_pred cCCCccccccccccccccchhhhHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..+.+..+|+..+|+|++||++++....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567888999999999999999887664
No 55
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=70.14 E-value=0.95 Score=33.63 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHhhhccCCCccccccccccccccchhhhHH
Q 015682 109 IALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 109 i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|..+..|.++..||...|||++|++.|++
T Consensus 24 ~kLK~il~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 24 NALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHTTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHcCCCHHHHHHHHc
Confidence 3344443499999999999999999988774
No 56
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=69.48 E-value=1.7 Score=38.04 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..|..+.-.-..+++..|.++..||..+|||++||++.+..
T Consensus 7 e~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 7 QHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp SSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34544433334444678999999999999999999997653
No 57
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=69.45 E-value=1.5 Score=36.85 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHhh---hcc-----CCCccccccccccccccchhhhHH---HHHHHHHHhhcccc
Q 015682 100 LLSVEKQVAIALR---RLA-----SGESQVSVGVAFGVGQSTVSQVTW---RFIEALEERAKHHL 153 (402)
Q Consensus 100 ~ls~e~~l~i~L~---~La-----~g~s~~~l~~~fgvs~sTv~~~i~---~v~~al~~~~~~~i 153 (402)
.++.|.+.++.+. -+. .|.+...++...|||++|++++.. .+...+.+++..++
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~l 87 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 87 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 3677777776543 221 167899999999999999999887 44445544444444
No 58
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=68.63 E-value=0.73 Score=34.02 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=17.1
Q ss_pred CccccccccccccccchhhhHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.+.++|+..||+|.+||.+.+.
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHH
Confidence 3466899999999888776654
No 59
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=66.72 E-value=2.1 Score=31.34 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHhhhccC--CCccccccccccccccchhhhHHHHH
Q 015682 104 EKQVAIALRRLAS--GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 104 e~~l~i~L~~La~--g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+++-+|.-.+. +.+..+||..+||+++||.+.+.+..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566666766663 56788999999999999987776543
No 60
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=66.40 E-value=2.1 Score=30.40 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 104 EKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 104 e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.++++-.|.--....+..+|+..+|+|++||++++....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344544444322346788999999999999988876543
No 61
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=65.65 E-value=3.7 Score=31.86 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
-.....+++|.......+.|+.+.+..|+||.+++.++...+-
T Consensus 33 RWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 33 RWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999987776553
No 62
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=65.33 E-value=1.6 Score=33.03 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=22.6
Q ss_pred CccccccccccccccchhhhHHHHHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+..+|+..++++++|+++++.+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999998876654
No 63
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=64.65 E-value=1 Score=32.02 Aligned_cols=21 Identities=24% Similarity=0.155 Sum_probs=18.1
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+..+|+...|||++|||++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 456889999999999999875
No 64
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=64.57 E-value=2 Score=30.90 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhhccCC-CccccccccccccccchhhhHHH
Q 015682 102 SVEKQVAIALRRLASG-ESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 102 s~e~~l~i~L~~La~g-~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
--+++|..++.-+..| .|....+..|||++||+..-++.
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 3478899999999999 89999999999999999755543
No 65
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=64.17 E-value=4.1 Score=42.06 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHhhhcc---CCCccccccccccccccchhhhHHHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLA---SGESQVSVGVAFGVGQSTVSQVTWRFIEALEE 147 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La---~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~ 147 (402)
.||+.++-++.|+|+- .|.++..||..||||.+||..+.++.+..|..
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 4899999999998873 67899999999999999999999887766543
No 66
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=63.77 E-value=2.2 Score=34.18 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=28.2
Q ss_pred HHHHHHhhhccCC-CccccccccccccccchhhhHHHHHH
Q 015682 105 KQVAIALRRLASG-ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 105 ~~l~i~L~~La~g-~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++..|..-..+ .+..+|+..+++|+|||++.+....+
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444455443333 68889999999999999998876654
No 67
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=63.71 E-value=3.9 Score=32.02 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.++.+++..+|++++|+++.+....+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4789999999999999999999987665
No 68
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=63.59 E-value=2.2 Score=36.84 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHhhhccC-------CCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQVAIALRRLAS-------GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~-------g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+++++++-+|..++. ..+..+||...|+++.|+++++.++.+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36889999999998875 467788999999999999999887654
No 69
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=63.26 E-value=4 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=24.4
Q ss_pred cCCCccccccccccccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+.+..+|+..+|+|++|+++.+....+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44568999999999999999999876653
No 70
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=62.57 E-value=2.8 Score=35.94 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhhhccCC-------------CccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQVAIALRRLASG-------------ESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g-------------~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++++-+|..|+.. .+..+||...|+++.|+++++.++.
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 67899999999888642 3567899999999999999887664
No 71
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=62.32 E-value=2.4 Score=34.24 Aligned_cols=39 Identities=10% Similarity=-0.048 Sum_probs=29.1
Q ss_pred HHHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 104 EKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 104 e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+++..|+.-..+.+..+|+..+|+++||+++++....
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445555663224567899999999999999998886554
No 72
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=62.31 E-value=12 Score=29.92 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=30.5
Q ss_pred CcCCHHHH-HHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 99 RLLSVEKQ-VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 99 ~~ls~e~~-l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+++.+. ++..|. ..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 34 VALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34676553 333333 33488999999999999999988876543
No 73
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=62.13 E-value=2.5 Score=36.67 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=37.0
Q ss_pred cCCcCCHHHHHHHHhhhccCC--CccccccccccccccchhhhHH
Q 015682 97 EGRLLSVEKQVAIALRRLASG--ESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 97 ~~~~ls~e~~l~i~L~~La~g--~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.-+++|.-++=--.++.|..| .++..+|..+|||++.|++++.
T Consensus 20 ~~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 20 HYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp ---CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 456799999999999999888 7999999999999999999885
No 74
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.05 E-value=3.3 Score=37.56 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
.+|+.++-++.|+ ..|.++..||...|+|.+||...+.+....|
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5899999998886 4999999999999999999999998887766
No 75
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=61.95 E-value=2.3 Score=31.76 Aligned_cols=39 Identities=5% Similarity=0.164 Sum_probs=30.2
Q ss_pred CHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 102 SVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 102 s~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+..++++..|. ..|.+..+||..+|||++||.+.+....
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566776666 4568999999999999999987776543
No 76
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=61.07 E-value=3.7 Score=30.45 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHHHHHHhhhccC--CCccccccccccccccchhhhHHHH
Q 015682 104 EKQVAIALRRLAS--GESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 104 e~~l~i~L~~La~--g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
+++++-.|.-.+- ..+...||..+|||++||.+.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566666665552 4677899999999999987766544
No 77
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=60.24 E-value=4 Score=35.80 Aligned_cols=82 Identities=4% Similarity=-0.166 Sum_probs=50.2
Q ss_pred CChhhhhcccCCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccCC--------Cccccccccccc
Q 015682 58 DEEEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASG--------ESQVSVGVAFGV 129 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~g--------~s~~~l~~~fgv 129 (402)
.+-+.|...+.-.+.-...++..+...+..... . -..-...+++++++-+|..++.. .+..+||...|+
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~--~-~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~ 198 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYS--R-LWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDD 198 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHH--H-TTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTS
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH--H-HHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCC
Confidence 445566666655555444444443322111000 0 00112368899999999988642 367789999999
Q ss_pred cccchhhhHHHHH
Q 015682 130 GQSTVSQVTWRFI 142 (402)
Q Consensus 130 s~sTv~~~i~~v~ 142 (402)
++.|+++++.++.
T Consensus 199 sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 199 TRLNISKTLNELQ 211 (232)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 9999999887764
No 78
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=60.15 E-value=3.6 Score=30.72 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 108 AIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 108 ~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...|..|+. ..+..+|...||+.||+||+-+.+++
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~ 50 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIP 50 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHH
Confidence 344555554 56788999999999999997555433
No 79
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=60.09 E-value=2 Score=35.42 Aligned_cols=34 Identities=29% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHhhhccCCCccccccccccc-cccchhhhHHH
Q 015682 107 VAIALRRLASGESQVSVGVAFGV-GQSTVSQVTWR 140 (402)
Q Consensus 107 l~i~L~~La~g~s~~~l~~~fgv-s~sTv~~~i~~ 140 (402)
.--.+.+|+.|.+.++++..+|| |.+|+++++.+
T Consensus 18 ~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 18 ADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 34466678899999999999999 89999999875
No 80
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=59.95 E-value=3.3 Score=35.35 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=33.9
Q ss_pred CCHHHHHHHHhhhccCC-------------CccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQVAIALRRLASG-------------ESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g-------------~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++++-+|..|+.. .+..+||...|+++.|+++++.++.
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67899999999877651 3556789999999999999887665
No 81
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=59.62 E-value=3.9 Score=34.95 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred CCHHHHHHHHhhhccCC-------------CccccccccccccccchhhhHHHHHHH-HHHhhcccccCCCchhHHH
Q 015682 101 LSVEKQVAIALRRLASG-------------ESQVSVGVAFGVGQSTVSQVTWRFIEA-LEERAKHHLKWPDSNRMEE 163 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g-------------~s~~~l~~~fgvs~sTv~~~i~~v~~a-l~~~~~~~i~~P~~~~~~~ 163 (402)
.+++++|+-+|..|+.. .+..+||...|+++.|+++++.++.+. +.+.-...|...+.+.+.+
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKE 193 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHH
Confidence 57899999999988642 356779999999999999998876532 1112223444455444444
No 82
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=59.51 E-value=3.8 Score=32.96 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHhhhc---cCCCccccccccccccccchhhhHHHHHH
Q 015682 105 KQVAIALRRL---ASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 105 ~~l~i~L~~L---a~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+|+.+ ..+.+..+|+..++++++||++.+.+..+
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3444455554 23468889999999999999988876543
No 83
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=59.22 E-value=4.3 Score=34.48 Aligned_cols=44 Identities=20% Similarity=0.033 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHhhhccC--C-----------CccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQVAIALRRLAS--G-----------ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~--g-----------~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+++++|+-+|..|+. | .+..+||...|+++.|+++++.++.+
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36789999999988763 2 35677999999999999999987654
No 84
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=59.06 E-value=5.3 Score=32.00 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=30.3
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|. ..+.+..+|+..++++++||++++.+..
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 55544 4444554 6678999999999999999998886654
No 85
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=58.84 E-value=4.3 Score=33.43 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|.....+.+..+|+..++++++|+++++.+..
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55544 4555565555667778999999999999998887654
No 86
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=58.69 E-value=4.1 Score=35.42 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCHHHHHHHHhhhccCC-------------CccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQVAIALRRLASG-------------ESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g-------------~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++++-+|..|+.. .+..+||...|+++.|+++++.++.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 58899999999988642 3567899999999999999887654
No 87
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=58.53 E-value=1.8 Score=30.14 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred ccCCCccccccccccccccchhhhH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
...| ++..++..+|||++|+++++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 3456 99999999999999999987
No 88
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=58.39 E-value=4.2 Score=36.17 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 98 GRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 98 ~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
...+|+.++-++.| ++.|.++.+||...|||.+||...+.+....+
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34689888776655 57999999999999999999999988877666
No 89
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=58.34 E-value=4.9 Score=32.80 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=31.0
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+ .++.+|+. ..+.+..+|+..++++++||++++.+..+
T Consensus 41 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466544 44444443 34689999999999999999988876553
No 90
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=58.27 E-value=2.5 Score=36.69 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhhccC--------------CCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQVAIALRRLAS--------------GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~l~i~L~~La~--------------g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++++-+|..++. ..+..+||...|+++.|+++++.++.
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4789999999988763 35778899999999999999988765
No 91
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.23 E-value=6.2 Score=32.54 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=30.0
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|.. ..+.+..+|+..++++++||++++.+..
T Consensus 44 lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 44 ISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp CCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555 34444443 3578999999999999999998887654
No 92
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=57.78 E-value=5.3 Score=35.49 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=38.2
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..+|+.++-++.| ++.|.++.+||...|||.+||...+.+....+
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4588888876655 57999999999999999999999988877666
No 93
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=57.49 E-value=4.9 Score=30.27 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.7
Q ss_pred HHHHHHHhhhccCCCccccc----cccccccccchhhhHHHHHH
Q 015682 104 EKQVAIALRRLASGESQVSV----GVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 104 e~~l~i~L~~La~g~s~~~l----~~~fgvs~sTv~~~i~~v~~ 143 (402)
+..++..|.. ..+.+..+| +..++++++|+++++.+..+
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445555543 345778888 89999999999998877665
No 94
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=57.30 E-value=2.8 Score=31.63 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.5
Q ss_pred cCCCccccccccccccccchhhhHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..+.+..+|+..+|+|++||++.+....
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~ 68 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5567888999999999999998876554
No 95
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=57.12 E-value=2.2 Score=36.86 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
++.-...++..|.+...|+..+|||.+|+++++.+
T Consensus 147 ~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 147 EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445556678999999999999999999998754
No 96
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=56.89 E-value=4.5 Score=30.55 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=27.7
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++..|.. ..+.+..+|+..+|++++||++.+....+
T Consensus 24 ~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 24 RIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444432 35678899999999999999998877654
No 97
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=56.60 E-value=4.3 Score=30.48 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCccccccccccccccc-hhhhHHHHHH
Q 015682 117 GESQVSVGVAFGVGQST-VSQVTWRFIE 143 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sT-v~~~i~~v~~ 143 (402)
+.+..+|+..++++++| +++++.+..+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999 9999977654
No 98
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.59 E-value=4.4 Score=32.49 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 104 EKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 104 e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+..++..|..-..+.+..+|+..++++++||++++.+...
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 3455555534456789999999999999999988876553
No 99
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=56.41 E-value=6.1 Score=31.28 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|.. ..+.+..+|+..++++++|+++++.+...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 31 ISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 55544 44444433 44678999999999999999988876553
No 100
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=56.09 E-value=7.8 Score=32.11 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=27.9
Q ss_pred CCHHH-HHHHHhhhc-cCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRL-ASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~L-a~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|+.. ..+.+..+|+..++++++||++++.+..
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 55444 444455544 3578999999999999999998887654
No 101
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=55.71 E-value=2 Score=30.47 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.3
Q ss_pred CccccccccccccccchhhhH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i 138 (402)
.++..+|..+||+++|||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999976
No 102
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=55.67 E-value=2.9 Score=31.31 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCccccccccccccccchhhhHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+..+|+..+|+|++|+++.+....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47888999999999999999887664
No 103
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.60 E-value=5.6 Score=28.96 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=21.9
Q ss_pred CCccccccccccccccchhhhHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+..+|+..+|+|++||++.+....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999988876554
No 104
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=55.28 E-value=3.7 Score=36.37 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhhhccC--------------CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLAS--------------GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~--------------g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++++|+-+|..|+. ..+..+||...|+++.|+++++.++.+
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 5789999999988753 246678999999999999998876653
No 105
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.78 E-value=5.7 Score=31.48 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 27 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 27 LTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp CCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544 44444443 4567899999999999999998886655
No 106
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=54.51 E-value=5.9 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=31.5
Q ss_pred cCCHHHH-HHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQ-VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~-l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+- ++..|+. ..+.+..+|+..++++++|+++++.+...
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4666554 4444433 34788999999999999999988876654
No 107
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=54.50 E-value=4 Score=35.45 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhhhccCC--------------CccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLASG--------------ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g--------------~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++++|+-+|..++.. .+...||...|+++.|+++++.++.+
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57889999999888731 46677999999999999999887643
No 108
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=54.23 E-value=1.3 Score=31.72 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.0
Q ss_pred CccccccccccccccchhhhHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.+..+|+...|||++|||++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3678899999999999998874
No 109
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=54.09 E-value=4.9 Score=35.93 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 98 GRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 98 ~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
...+|+.++-.+.| ++.|.+..+||...|||..||...+.+...-+
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 34688877766555 58999999999999999999999888776654
No 110
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=53.94 E-value=6.3 Score=31.47 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=29.3
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55544 33334433 34578899999999999999988866553
No 111
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=53.89 E-value=3.2 Score=35.71 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=33.2
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
..+++-++.......+..|.+...|+..+|+|+++|++++
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4577777776667777789999999999999999998875
No 112
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.84 E-value=5.7 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=30.9
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+ .++..|+. ..+.+..+|+..++++++|+++.+.+...
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 44444443 34789999999999999999988876554
No 113
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=53.68 E-value=6.8 Score=31.62 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=25.5
Q ss_pred CCHHH-HHHHHhhhcc-CCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLA-SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La-~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.+..+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 55544 4444554432 5789999999999999999998876654
No 114
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=53.37 E-value=4.7 Score=34.90 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhhhccC-----------CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLAS-----------GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~-----------g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++++++-+|..++. ..+..+||...|+++.|+++++.++.+
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4678999988876653 246678999999999999999877654
No 115
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=53.15 E-value=7.5 Score=31.73 Aligned_cols=43 Identities=30% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++..+ .++..|+.-..+.+..+|+..++++++|+++++.+..+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55444 45555544456789999999999999999998876654
No 116
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=52.97 E-value=5.5 Score=32.02 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=30.0
Q ss_pred CCHHHH-HHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQ-VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~-l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+- ++..|. -..+.+..+|+..++++++|+++++.+..
T Consensus 29 lt~~q~~iL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 29 LNYNLFAVLYTLA-TEGSRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp CCHHHHHHHHHHH-HHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555553 333443 34468999999999999999998887654
No 117
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=52.90 E-value=3.2 Score=31.50 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHhhhcc--CCCccccccccccccccchhhhHHHHH
Q 015682 100 LLSVEKQVAIALRRLA--SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La--~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++.+.+.+-+-+ .|..+++|+...+++++|+.+++.+..
T Consensus 17 ~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 17 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp CSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4666666655555542 389999999999999999988876553
No 118
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=52.90 E-value=4.2 Score=32.88 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.1
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+.+..+|+..+|++++||++.+.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467888999999999999998887654
No 119
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=52.68 E-value=5.6 Score=32.23 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|..-..+.+..+|+..++++++|+++++.+..
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 45444 4444444433456999999999999999998887654
No 120
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=52.58 E-value=7.4 Score=31.53 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..| -..+.+..+|+..++++++||++++.+...
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 444444 556788999999999999999988876543
No 121
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.43 E-value=5.1 Score=31.91 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 55544 34444443 34678999999999999999988876654
No 122
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=52.32 E-value=3 Score=36.15 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=0.5
Q ss_pred CCHHHHHHHHhhhccC-------CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLAS-------GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~-------g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++++++-+|..++. ..+..+||...|+++.|+++++.++.+
T Consensus 141 ~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 141 KTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp C-------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5778899999988773 357889999999999999999987653
No 123
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.25 E-value=3.5 Score=35.41 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCHHHHHHHHhhhccC-------CCccccccccccccccchhhhHHHHHHH-HHHhhcccccCCCchhHHHHH
Q 015682 101 LSVEKQVAIALRRLAS-------GESQVSVGVAFGVGQSTVSQVTWRFIEA-LEERAKHHLKWPDSNRMEEIK 165 (402)
Q Consensus 101 ls~e~~l~i~L~~La~-------g~s~~~l~~~fgvs~sTv~~~i~~v~~a-l~~~~~~~i~~P~~~~~~~i~ 165 (402)
.+++++++-+|..++. ..+..+||...|+++.|+++++.++.+. +.+.-...|.-.+.+.+.+++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 4678999999987652 2467789999999999999998876542 111222344445554444443
No 124
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=52.18 E-value=8.6 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.+..+|+..+|+|++|+++.+....+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578899999999999999999876655
No 125
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=52.13 E-value=5.9 Score=31.75 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=31.1
Q ss_pred cCCHHHH-HHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQ-VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~-l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+- ++..|.. ..+.+..+|+..++++++|+++++.+..+
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3665553 3444433 36789999999999999999988876553
No 126
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=51.95 E-value=6.7 Score=31.18 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCHHH-HHHHHhhhccC-CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLAS-GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~-g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-.. +.+..+|+..++++++||++++.+...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 55444 45555555432 679999999999999999988866543
No 127
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=51.71 E-value=2.9 Score=31.63 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=23.2
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.+..+|+..+|+|++|+++.+....+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468889999999999999988876544
No 128
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=51.66 E-value=3.2 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred hccCCCccccccccccccccchhhhH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+-..|.++.++|...|||++|++++-
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 45679999999999999999998764
No 129
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=51.61 E-value=6.4 Score=31.93 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=30.6
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|.. ..+.+..+|+..++++++||++++.+...
T Consensus 39 lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 39 ITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp CCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555 44444433 46788999999999999999988876653
No 130
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=51.58 E-value=5.7 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=32.2
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.++..+ .++..|.....+.+..+|+..++++++||++++.+..+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 355544 44455554456689999999999999999988876553
No 131
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=51.55 E-value=6 Score=31.50 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=31.0
Q ss_pred CCHHH-HHHHHhhhcc-CCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLA-SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La-~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.+..+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 45444 4555554433 3788999999999999999988876553
No 132
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.40 E-value=7.1 Score=31.44 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=30.8
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 40 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 40 ITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 55544 44445544 34789999999999999999988876553
No 133
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.33 E-value=6.7 Score=31.83 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 45 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 45 LTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 56554 34444443 4567899999999999999998886654
No 134
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.08 E-value=4 Score=31.07 Aligned_cols=28 Identities=29% Similarity=0.200 Sum_probs=23.2
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...+..+|+..+|+|++|+++.+....+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468889999999999999998876543
No 135
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=50.49 E-value=6.6 Score=34.29 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHhhhccCC----------CccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASG----------ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g----------~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+++++++-+|..++.. .+..+||...|+++.|+++++.++.+
T Consensus 151 ~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 151 AQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 468899999999998642 24668999999999999999876653
No 136
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.46 E-value=8.3 Score=31.33 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=29.5
Q ss_pred CCHHHH-HHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQ-VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~-l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++..+- ++..|+ -..+.+..+|+..++++++||++++.+...
T Consensus 41 lt~~~~~iL~~l~-~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 41 LRVPEWRVLACLV-DNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CCHHHHHHHHHHS-SCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555443 333333 344678999999999999999988866543
No 137
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.29 E-value=6.4 Score=31.47 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+. ..+.+..+|+..++++++|+++++.+...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 55544 44445544 45689999999999999999988876553
No 138
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.15 E-value=7.6 Score=30.73 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++..+ .++..|+. ..+.+..+|+..++++++|+++++.+...
T Consensus 32 lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 32 ITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 55544 34444433 44678999999999999999998876554
No 139
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=50.12 E-value=5.1 Score=31.82 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=31.0
Q ss_pred CCHHH-HHHHHhhhcc-CCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLA-SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La-~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.+...
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 4555555421 5678999999999999999998876554
No 140
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=50.00 E-value=6.3 Score=32.36 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
++..+ .++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 50 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 50 LSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 55544 44444443 4567899999999999999998887654
No 141
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=49.97 E-value=5.3 Score=35.84 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhhhccCC-------------CccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLASG-------------ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g-------------~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++++|+-+|..|+.. .+..+||...|+++.|+++++.++.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57899999999887642 24577999999999999998876653
No 142
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.86 E-value=7.6 Score=31.13 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-..+.+..+|+..+|++++||++++.+...
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 44444 34444443245789999999999999999988876553
No 143
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=49.69 E-value=9.2 Score=35.14 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHHHHhhcc
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKH 151 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~ 151 (402)
.+|+.++-++.|+++ .|.++..+|...|++.+||...+.+....+......
T Consensus 111 ~Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~ 161 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELAT 161 (286)
T ss_dssp HHSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred hCCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCC
Confidence 367788888888877 489999999999999999999888888777665443
No 144
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=49.57 E-value=3.1 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCccccccccccccccchhhhHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
.+.+..+++..+|||.+||+++++.
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3467889999999999999998865
No 145
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=49.46 E-value=6.6 Score=31.84 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=30.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+. ..+.+..+|+..++++++|+++++.+...
T Consensus 39 lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 39 LTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 44445544 35678999999999999999988866543
No 146
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=49.26 E-value=5.2 Score=29.09 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCH-HHHHHHHhhhccCCCcccccccccc----ccccchhhhHHHHH
Q 015682 101 LSV-EKQVAIALRRLASGESQVSVGVAFG----VGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~-e~~l~i~L~~La~g~s~~~l~~~fg----vs~sTv~~~i~~v~ 142 (402)
++. +..++.+|+. ..+.+..+|+..++ ++.+||++++.+..
T Consensus 7 lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~ 52 (82)
T 1p6r_A 7 ISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLI 52 (82)
T ss_dssp CCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 444 4456666666 45678889999887 67899888776554
No 147
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=49.19 E-value=7.2 Score=30.95 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=28.9
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|.. ..+.+..+|+..++++++||++.+.+..
T Consensus 29 l~~~~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 29 ISLTRYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44433 34444433 3467899999999999999998886654
No 148
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=49.02 E-value=5.7 Score=31.85 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+ -..+.+..+|+..++++++|+++++.+..+
T Consensus 34 lt~~q~~vL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 34 LTYTGYIVLMAIE-NDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp CCHHHHHHHHHSC-TTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55554 3333333 234678899999999999999988876653
No 149
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=49.01 E-value=5.5 Score=35.32 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHhhhccC--------------CCccccccccccccccchhhhHHHHHHH-HHHhhcccccCCCchhHHHH
Q 015682 100 LLSVEKQVAIALRRLAS--------------GESQVSVGVAFGVGQSTVSQVTWRFIEA-LEERAKHHLKWPDSNRMEEI 164 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~--------------g~s~~~l~~~fgvs~sTv~~~i~~v~~a-l~~~~~~~i~~P~~~~~~~i 164 (402)
..+++++|+-+|..|+. ..+..+||...|+++.|+++++.++.+. +.+.-...|...+.+.+.++
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 225 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHL 225 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHHHHHHH
Confidence 36889999999987652 3467789999999999999998876543 11122233444444444444
Q ss_pred H
Q 015682 165 K 165 (402)
Q Consensus 165 ~ 165 (402)
+
T Consensus 226 a 226 (250)
T 3e6c_C 226 S 226 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.85 E-value=8.2 Score=31.59 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=30.4
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++..+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 44445544 45688889999999999999988876553
No 151
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.81 E-value=6.9 Score=31.38 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=30.6
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 356544 34444443 34678999999999999999988876553
No 152
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=48.67 E-value=7 Score=31.58 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|.. ..+.+..+|+..++++++|+++++.+..
T Consensus 38 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 38 VTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544 44444443 3478899999999999999998886654
No 153
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=48.54 E-value=4.6 Score=29.20 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHhhhccCCCccccccccccccccchhhhH
Q 015682 107 VAIALRRLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 107 l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+...|. ..|.++..||...|||++|++++.
T Consensus 14 i~~~l~--~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 14 VIAGLK--KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HHHHHH--TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HHHHHH--HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 333444 668999999999999999998764
No 154
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=48.14 E-value=2.3 Score=33.12 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEA 144 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~a 144 (402)
+++..|. ..+.+..+|+..+|++++||++.+....++
T Consensus 29 ~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 29 QILDLLA--QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444443 345688899999999999999998776543
No 155
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=48.09 E-value=3.6 Score=32.44 Aligned_cols=29 Identities=3% Similarity=0.042 Sum_probs=23.7
Q ss_pred cCCCccccccccccccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+.+..+|+..+|+|++||++.+....+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 44568889999999999999988876543
No 156
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=48.00 E-value=10 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...++.+|+..+|+|++|+++.+.+..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999988876643
No 157
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=47.47 E-value=8.1 Score=34.91 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCHHHHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++.-++.+-.|..|+. +.+..+|+..+|+++||+++++....+
T Consensus 10 v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 10 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566666777763 468889999999999999999887654
No 158
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=46.80 E-value=5.1 Score=32.09 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 105 KQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 105 ~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 32 ~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 32 YLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 344445544 3467899999999999999998886654
No 159
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=46.00 E-value=6.1 Score=32.05 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 35 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 35 VTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544 34444433 3467899999999999999998886654
No 160
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=45.91 E-value=12 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=31.9
Q ss_pred CCHHH-HHHHHhhhccC--CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLAS--GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~--g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|+.-.. |.+..+|+..++++++||++++.+...
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45433 55556655443 389999999999999999999877654
No 161
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=45.34 E-value=8.2 Score=32.05 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
++..+ .++..|.. ..+.+..+|+..+|++++||++++.+..
T Consensus 43 lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 43 ITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55544 44445544 3478999999999999999998886654
No 162
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=45.30 E-value=6.3 Score=30.37 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++..| ...+.+..+|+..+|+|++|+++.+.....
T Consensus 25 ~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 25 EILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444 244578889999999999999998876643
No 163
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=45.08 E-value=8.9 Score=33.16 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=51.0
Q ss_pred CChhhhhcccCCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccC--------------CCccccc
Q 015682 58 DEEEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLAS--------------GESQVSV 123 (402)
Q Consensus 58 ~~~~~F~~~fRms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~--------------g~s~~~l 123 (402)
.+-+.|...+.-.+.-...++..+...+..... . -..-...+++++++-+|..|+. ..+..+|
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~-~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~l 183 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNN--N-LADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEI 183 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH--H-HHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH--H-HHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHH
Confidence 445666666666665544454444322211000 0 0001135789999999988742 2467789
Q ss_pred cccccccccchhhhHHHHHH
Q 015682 124 GVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 124 ~~~fgvs~sTv~~~i~~v~~ 143 (402)
|...|+++.|+++++.++.+
T Consensus 184 A~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 184 AQLVGASRETVNKALADFAH 203 (227)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHH
Confidence 99999999999999887653
No 164
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=45.06 E-value=6.3 Score=34.64 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=43.4
Q ss_pred CCHHHHHHHHhhhccC---------------CCcccccccccccccc-chhhhHHHHHHH-HHHhhcccccCCCchhHHH
Q 015682 101 LSVEKQVAIALRRLAS---------------GESQVSVGVAFGVGQS-TVSQVTWRFIEA-LEERAKHHLKWPDSNRMEE 163 (402)
Q Consensus 101 ls~e~~l~i~L~~La~---------------g~s~~~l~~~fgvs~s-Tv~~~i~~v~~a-l~~~~~~~i~~P~~~~~~~ 163 (402)
.+++++|+-+|..|+. ..+..+||...|++++ |+++++.++.+. +.+.....|...+.+.+.+
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~ 217 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKR 217 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHH
Confidence 5688999999987641 3556789999999994 999999877532 1122233455555555555
Q ss_pred HH
Q 015682 164 IK 165 (402)
Q Consensus 164 i~ 165 (402)
++
T Consensus 218 ~~ 219 (238)
T 2bgc_A 218 YA 219 (238)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 165
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=44.70 E-value=7.5 Score=34.49 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=32.1
Q ss_pred CHHHHHHHHhhhcc-CCCcc--ccccccccccccchhhhHHHHH
Q 015682 102 SVEKQVAIALRRLA-SGESQ--VSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 102 s~e~~l~i~L~~La-~g~s~--~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.++.++-+|+.|. .|.+. .+|+..++++++|+++.+.+..
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34667777888875 36677 8999999999999998876554
No 166
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=44.50 E-value=8.4 Score=30.85 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=28.6
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|.. ++.+..+|+..++++++|+++.+.+..+
T Consensus 35 lt~~~~~iL~~l~~--~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 35 LSYLDFSILKATSE--EPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp CCHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44444 44444433 2239999999999999999988876654
No 167
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=44.20 E-value=11 Score=30.85 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=26.2
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++-.|.. ....++.+|+..+|+|++|+++.+.+..
T Consensus 11 ~iL~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~ 46 (150)
T 2w25_A 11 ILVRELAA-DGRATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp HHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34434432 3457899999999999999988876554
No 168
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=43.77 E-value=3.9 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCccccccccccccccchhhhHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.| ++..+|...|||++||+++.+
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHH
Confidence 47 899999999999999998765
No 169
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.61 E-value=7.3 Score=32.05 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+++.+ .++..|.. ..+.+..+|+..++++++|+++++.+...
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 44444443 34788999999999999999988876543
No 170
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.56 E-value=2.4 Score=29.37 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.3
Q ss_pred CCccccccccccccccchhhhH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+.++..||..+|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4588899999999999999874
No 171
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=43.50 E-value=4.3 Score=30.38 Aligned_cols=28 Identities=0% Similarity=-0.048 Sum_probs=23.8
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.+..+|+..+|++++|+++.+.+..+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999998876654
No 172
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=43.36 E-value=9.6 Score=29.28 Aligned_cols=26 Identities=4% Similarity=-0.022 Sum_probs=21.7
Q ss_pred CCccccccccccccccchhhhHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..+..+|+..+|+|++||++.+....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46778999999999999988876554
No 173
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.84 E-value=7 Score=33.97 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=34.3
Q ss_pred CHH-HHHHHHhhhccC-------------CCccccccccccccccchhhhHHHHHH
Q 015682 102 SVE-KQVAIALRRLAS-------------GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 102 s~e-~~l~i~L~~La~-------------g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++. ++++-+|..++. ..+..+||...|+++.|+++++.++.+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 445 899999988864 346788999999999999999887654
No 174
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=42.71 E-value=6.5 Score=35.17 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=32.0
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..+++.++.......+..|.+...|+..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34676666555555557899999999999999999988763
No 175
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.60 E-value=11 Score=27.30 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCccccccccc-----cccccchhhhHHHHHH
Q 015682 117 GESQVSVGVAF-----GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 117 g~s~~~l~~~f-----gvs~sTv~~~i~~v~~ 143 (402)
..+..+|+..+ ++|.+||++.+..+.+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 46777888888 9999999988865553
No 176
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.57 E-value=6.4 Score=30.98 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=23.1
Q ss_pred cCCCccccccccccccccchhhhHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..+.+..+|+..+|+|++|+++.+....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~ 59 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456888999999999999999887654
No 177
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=42.51 E-value=12 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.6
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...++.+|+..+|+|++||++.+.+..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988776554
No 178
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=42.51 E-value=5.2 Score=33.74 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=0.5
Q ss_pred CCHHHHHHHHhhhccC---CCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEKQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++++++-+|..+.. ..+..+||...|+++.|++|+..+.+
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp C--------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 4667888887776543 45788999999999999999987653
No 179
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=42.41 E-value=5.3 Score=34.48 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 107 VAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 107 l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
+--....+..|.+...|+..+|+|.+|+++++.+.-.++
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~ 186 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHhh
Confidence 333344566899999999999999999999887644433
No 180
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=42.32 E-value=4.5 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=18.8
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...||..+|||++||++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 378899999999999999975
No 181
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=41.96 E-value=9.8 Score=35.52 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHhhhccCCCccccccccccccccchhhhHHHH
Q 015682 108 AIALRRLASGESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 108 ~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
-++..|...+.+..+|+..||||++||+|-+.+.
T Consensus 12 ~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 12 KIAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455566778999999999999999999877643
No 182
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=41.93 E-value=4.6 Score=29.46 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=22.9
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++.+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999988764
No 183
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=41.87 E-value=5.7 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.4
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+-..|.++..+|..+|||++|++++-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 456799999999999999999988753
No 184
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=41.70 E-value=11 Score=34.25 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred CcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 99 RLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 99 ~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
..+|..++-++.|. +.|.++.+||...|||..||...+.+....+
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 35888777666554 7999999999999999999999988877655
No 185
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=41.62 E-value=13 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=22.8
Q ss_pred CCccccccccccccccchhhhHHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..++.+|+..+|+|++|+++.+.+..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999988866543
No 186
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=41.58 E-value=7.4 Score=34.99 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 105 KQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 105 ~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++.+-.|..|+. +.+..+|+..+|+++||+++++....+
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444555542 578889999999999999999876654
No 187
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=41.53 E-value=8.5 Score=30.03 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=30.8
Q ss_pred CCHHH-HHHHHhhhccCCCcccccccccc----ccccchhhhHHHHHH
Q 015682 101 LSVEK-QVAIALRRLASGESQVSVGVAFG----VGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~g~s~~~l~~~fg----vs~sTv~~~i~~v~~ 143 (402)
+++.+ .++.+|+. ..+.+..+|+..++ ++++||++++.+..+
T Consensus 8 lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 8 ISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 45444 45555655 55788899999998 889999988877654
No 188
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=41.52 E-value=4.1 Score=27.71 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.0
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
-..|.++.++|...|||++|++++.+
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999988763
No 189
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=41.52 E-value=8.6 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.++-.|..++...++.++|...|||++|++++-+
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 3555666666666889999999999999987653
No 190
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=41.52 E-value=4.4 Score=29.23 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=33.3
Q ss_pred hhhccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 111 LRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 111 L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
-++...|.++.++|...|||++|++++.+. ...-|+.+.+..++..|
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G-----------~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERN-----------LQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-----------SCCCCBHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHH
Confidence 345677899999999999999999876531 01345555666666655
No 191
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=41.51 E-value=13 Score=32.27 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=41.4
Q ss_pred CCHHHHHHHHhhhcc-------------CCCccccccccccccccchhhhHHHHHHH-HHHhhcccccCCCchhHHHH
Q 015682 101 LSVEKQVAIALRRLA-------------SGESQVSVGVAFGVGQSTVSQVTWRFIEA-LEERAKHHLKWPDSNRMEEI 164 (402)
Q Consensus 101 ls~e~~l~i~L~~La-------------~g~s~~~l~~~fgvs~sTv~~~i~~v~~a-l~~~~~~~i~~P~~~~~~~i 164 (402)
.+++++++-+|..|+ -..+..+||...|+++.|+++++.++.+. +.+.....|...+.+.+.++
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~ 228 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKT 228 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHHHHHHH
Confidence 578999999996543 22466789999999999999998876432 11111233444554444443
No 192
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.25 E-value=7.9 Score=30.63 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.+..+|+..+|+|++|+++.+.....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999999876653
No 193
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=41.11 E-value=14 Score=30.19 Aligned_cols=27 Identities=4% Similarity=-0.018 Sum_probs=23.0
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...++.+||..+|+|++|+++.+.+..
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988876654
No 194
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=40.99 E-value=8.5 Score=29.61 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=23.8
Q ss_pred cCCCccccccccc-cccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAF-GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~f-gvs~sTv~~~i~~v~~ 143 (402)
..+.++.+|+..+ |++++|+++.+.+..+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3457899999999 9999999988866543
No 195
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=40.74 E-value=3.6 Score=31.40 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHHHHhhhcc-CCCccccccccccccccchhhhHHHHHHH
Q 015682 105 KQVAIALRRLA-SGESQVSVGVAFGVGQSTVSQVTWRFIEA 144 (402)
Q Consensus 105 ~~l~i~L~~La-~g~s~~~l~~~fgvs~sTv~~~i~~v~~a 144 (402)
.++.|....+. .+.+..+++..+|+|++|+|+.+....++
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34444323333 34788899999999999999999877666
No 196
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=40.64 E-value=4.3 Score=28.11 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.9
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688999999999999999987763
No 197
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=40.47 E-value=4.1 Score=29.41 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.8
Q ss_pred cCCCccccccccccccccchhhhHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|.++.++|...|||++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4688999999999999999988763
No 198
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=40.41 E-value=14 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.4
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...++.+|+..+|+|++|+++.+.+..+
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999888776543
No 199
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=40.31 E-value=4.4 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35688999999999999999987753
No 200
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=40.31 E-value=5 Score=29.54 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHhh--hccCCCccccccccccccccchhhhH
Q 015682 107 VAIALR--RLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 107 l~i~L~--~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
++-.|. +...|.++.+++...|||++|++++-
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 444444 34578999999999999999998875
No 201
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=40.22 E-value=2.5 Score=30.05 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.7
Q ss_pred CccccccccccccccchhhhHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.++...|..+||++++||+.++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999999873
No 202
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=40.05 E-value=11 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCHHH-HHHHHhhhccC-CCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLAS-GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La~-g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
++..+ .++..|..-.. +.+..+|+..++++++|+++++.+..
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55554 34444443333 36888999999999999998887654
No 203
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=40.05 E-value=6.5 Score=32.23 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 105 KQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 105 ~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
-.++..|+. ..+.+..+|+..++++++|+++++.+..+
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555544 35688999999999999999988876553
No 204
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=39.51 E-value=11 Score=30.20 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...++.+|+..+|+|++|+++.+.+..+
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999888766543
No 205
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=39.38 E-value=12 Score=31.87 Aligned_cols=42 Identities=7% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCHHH-HHHHHhhhc-cCCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRL-ASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~L-a~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|+.. ..+.+..+|+..++++++|+++++.+..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 82 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE 82 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544 455556554 3578999999999999999998876554
No 206
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=39.33 E-value=12 Score=28.81 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=23.9
Q ss_pred hhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 111 LRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 111 L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
|..|+ +.+++.+|...||+.||+||+-....+
T Consensus 18 l~~la-~~gq~~vA~~iGV~~StISR~k~~~~~ 49 (97)
T 1xwr_A 18 LNKIA-MLGTEKTAEAVGVDKSQISRWKRDWIP 49 (97)
T ss_dssp HHHHH-HHCHHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred HHHHH-HHhHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 44444 467889999999999999996554433
No 207
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=39.22 E-value=18 Score=29.07 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhhh------ccCCCc---cccccccccccccchhhhHHH
Q 015682 101 LSVEKQVAIALRR------LASGES---QVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 101 ls~e~~l~i~L~~------La~g~s---~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+|.-+|++-.|.. |.-|.. -+.|+..||||++||.+.+..
T Consensus 13 ~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554443 555654 357999999999999765543
No 208
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.91 E-value=6 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.5
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 22 ~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35688999999999999999988775
No 209
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=38.57 E-value=6.9 Score=32.48 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.5
Q ss_pred cCCCccccccccccccccchhhhHHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIEA 144 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~a 144 (402)
....+..+|+..+|++++||++.+....++
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455788899999999999999988765543
No 210
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=38.40 E-value=6.6 Score=36.40 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=0.0
Q ss_pred CccccccccccccccchhhhHHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
.+..+||...|||.+|||++++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 35789999999999999999875
No 211
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.34 E-value=4.6 Score=28.45 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=30.9
Q ss_pred cCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
..|.++.++|...|||++|++++.+. . .-|+.+.+..++..|
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g----------~--~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN----------D--VQPSLETLFDIAEAL 60 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT----------S--SCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC----------C--CCCCHHHHHHHHHHH
Confidence 56889999999999999999887641 1 236666666666655
No 212
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=38.30 E-value=6.7 Score=36.35 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+..+||...|||.+|||++++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4678999999999999999875
No 213
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.30 E-value=5 Score=28.35 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.1
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34688999999999999999988763
No 214
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=37.65 E-value=5.6 Score=30.69 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHhh--hccCCCccccccccccccccchhhhH
Q 015682 105 KQVAIALR--RLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 105 ~~l~i~L~--~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+.++-.|+ +...|.++.++|...|||++|++++=
T Consensus 35 ~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 35 EEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHH
Confidence 34444444 45679999999999999999998763
No 215
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=37.50 E-value=12 Score=33.83 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=33.5
Q ss_pred CCHHHHHHHHhhhcc---CCCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLA---SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La---~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+..-++.+-.|..|+ .+.+..+|+..+|+++||+++++....+
T Consensus 19 v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 19 VRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455566666777776 3578899999999999999999876554
No 216
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=37.40 E-value=7 Score=36.63 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=0.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+..+||...|||.+|||++++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5679999999999999999975
No 217
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.25 E-value=11 Score=30.45 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCH-HHHHHHHhhhccCCCcccccccccc----ccccchhhhHHHHH
Q 015682 101 LSV-EKQVAIALRRLASGESQVSVGVAFG----VGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~-e~~l~i~L~~La~g~s~~~l~~~fg----vs~sTv~~~i~~v~ 142 (402)
+++ +..++.+|+....+.+..+|+..++ ++.+||++++.+..
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 454 4456666665546788999999997 89999988876654
No 218
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.19 E-value=7.1 Score=36.30 Aligned_cols=23 Identities=35% Similarity=0.254 Sum_probs=0.0
Q ss_pred CccccccccccccccchhhhHHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
.+..+||...|||.+|||++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35689999999999999999964
No 219
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.97 E-value=15 Score=30.31 Aligned_cols=27 Identities=7% Similarity=0.008 Sum_probs=22.9
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...++.+|+..+|+|++||++.+.+..
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347899999999999999988886654
No 220
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=36.78 E-value=7.3 Score=36.26 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccccccccccccccchhhhHHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
.+..+||..+|||.+|||++++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35679999999999999999873
No 221
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=36.76 E-value=16 Score=30.74 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=29.2
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.++..+ +++-.|.. ....++.+||..+|+|++||++.+.+..
T Consensus 14 ~ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 14 HLDDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQ 56 (171)
T ss_dssp CCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345444 44434433 3457999999999999999988876654
No 222
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=36.40 E-value=7.4 Score=36.42 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=0.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+..+||...|||.+|||++++.
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5679999999999999999875
No 223
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=36.34 E-value=8.6 Score=30.95 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=17.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+.+.|+..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3457889999999999766543
No 224
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=36.34 E-value=7.5 Score=36.09 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=0.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+..+||...|||.+|||++++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 4678999999999999999875
No 225
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.10 E-value=6.1 Score=27.95 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=30.3
Q ss_pred ccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
-..|.++.++|...|||++|++++.+. -..-|+.+.+..++..|
T Consensus 17 ~~~g~sq~~lA~~~gis~~~i~~~e~g-----------~~~~~~~~~l~~ia~~l 60 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNAMFEG-----------RSKRPTITTIRKVCGTL 60 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHCT-----------TCCCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHc
Confidence 346889999999999999999887631 11235555556665554
No 226
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=35.75 E-value=7.5 Score=28.97 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=29.5
Q ss_pred cCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
..|.++.++|...|||++|++++.+. -.-|+.+.+..++..|
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G------------~~~p~~~~l~~ia~~l 61 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG------------IAIPRMGKVQALADYF 61 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT------------SCCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC------------CCCCCHHHHHHHHHHH
Confidence 45788999999999999999877531 1235555556665554
No 227
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=35.51 E-value=13 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.039 Sum_probs=23.4
Q ss_pred HHHHHHhhhccC--CCccccccccc-----cccccchhhhHH
Q 015682 105 KQVAIALRRLAS--GESQVSVGVAF-----GVGQSTVSQVTW 139 (402)
Q Consensus 105 ~~l~i~L~~La~--g~s~~~l~~~f-----gvs~sTv~~~i~ 139 (402)
++..+.+..|.. ..+..+|+..+ +||.+||++.+.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 344433333433 35566788888 999999998887
No 228
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.51 E-value=5.1 Score=27.37 Aligned_cols=25 Identities=24% Similarity=0.241 Sum_probs=21.3
Q ss_pred cCCCccccccccccccccchhhhHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|.++.++|...|||++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4578899999999999999987753
No 229
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=35.49 E-value=7.8 Score=36.31 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=0.0
Q ss_pred ccccccccccccccchhhhHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+..+||..+|||.+|||++++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 4678999999999999999973
No 230
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.43 E-value=14 Score=32.12 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=31.0
Q ss_pred cCCHHH-HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 100 LLSVEK-QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 100 ~ls~e~-~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+++.+ .++..|+. ..+.+..+|+..++++++|+++++.+..
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356555 44445544 3578999999999999999998886654
No 231
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=35.39 E-value=5.9 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=21.4
Q ss_pred cCCCccccccccccccccchhhhHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|.++.++|...|||++|++++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4688999999999999999987653
No 232
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=35.38 E-value=10 Score=33.85 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 105 KQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 105 ~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++.+-.|..|+. +.+..+|+..+|+++||+++++....+
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555543 468889999999999999999876654
No 233
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=35.14 E-value=6.4 Score=28.31 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.2
Q ss_pred hccCCCccccccccccccccchhhhH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+...|.++.++|...|||++|++++-
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 34578999999999999999998775
No 234
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=35.00 E-value=13 Score=33.61 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 101 LSVEKQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~e~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
++.-++.+-.|..|+. +.+..+|+..+|+++||+++++....+
T Consensus 17 v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566666777763 467889999999999999999887654
No 235
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.86 E-value=16 Score=26.79 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=32.1
Q ss_pred hhccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 112 RRLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 112 ~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
.+...|.++.++|...|||++|++++.+. . .-|+.+.+..++..|
T Consensus 21 ~r~~~glsq~~lA~~~gis~~~is~~e~g----------~--~~p~~~~l~~la~~l 65 (91)
T 1x57_A 21 GRQSKGLTQKDLATKINEKPQVIADYESG----------R--AIPNNQVLGKIERAI 65 (91)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHHT----------C--SCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC----------C--CCCCHHHHHHHHHHH
Confidence 34567899999999999999999877641 1 225555566666655
No 236
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=34.76 E-value=22 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=27.6
Q ss_pred CHHHHHHHHhhhccCCC--ccccccccccccccchhhhHHH
Q 015682 102 SVEKQVAIALRRLASGE--SQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 102 s~e~~l~i~L~~La~g~--s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..-+++.-++..|.-|. +...||..+|+++++|.+++..
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666666776665 5668999999999887665543
No 237
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=34.63 E-value=16 Score=32.98 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=24.6
Q ss_pred cCCCccccccccccccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
..+.+..+|+..+|+++||+++.+....+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45788999999999999999988876554
No 238
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=34.23 E-value=12 Score=30.16 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=23.4
Q ss_pred CCCccccccccc-cccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAF-GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~f-gvs~sTv~~~i~~v~~ 143 (402)
.+.++.+|+..+ ||+++|+++.+.+..+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 447899999999 7999999988876654
No 239
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=34.17 E-value=6.7 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=18.6
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+..+||...|||.+|||++++
T Consensus 2 ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHc
Confidence 356899999999999999986
No 240
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.68 E-value=5.4 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=22.4
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++.+
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345588999999999999999988753
No 241
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=33.67 E-value=11 Score=30.84 Aligned_cols=28 Identities=7% Similarity=0.098 Sum_probs=23.8
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
...++.+|+..+||+++|+++.+.+..+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4588999999999999999988876554
No 242
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.32 E-value=6.7 Score=27.56 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=30.3
Q ss_pred ccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
...|.++.++|...|||++|++++.+. . ..|+.+.+..++..|
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~ia~~l 62 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCSN---------K---SQPSLDMLVKVAELL 62 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT---------S---SCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 346889999999999999999877531 1 235555566666555
No 243
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=33.23 E-value=7.3 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.2
Q ss_pred hccCCCccccccccccccccchhhhH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
+...|.++..+|..+|||++|++++-
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 34468999999999999999998874
No 244
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=32.84 E-value=6.2 Score=28.45 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.1
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34689999999999999999987753
No 245
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=32.82 E-value=20 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.9
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...++.+||..+|+|++||++.+.+..
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988876654
No 246
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.54 E-value=5.8 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.241 Sum_probs=21.4
Q ss_pred cCCCccccccccccccccchhhhHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|.++.++|...|||++|++++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999987753
No 247
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=32.49 E-value=7.2 Score=36.36 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.8
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+..+||..+|||.+|||++++
T Consensus 12 ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 12 TLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CHHHHHHHHCCCSHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHc
Confidence 567899999999999999885
No 248
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=32.49 E-value=9.1 Score=26.44 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=30.0
Q ss_pred cCCCcccccccccc--ccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 115 ASGESQVSVGVAFG--VGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 115 a~g~s~~~l~~~fg--vs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
..|.++.++|...| +|++|++++.+- . .-|+.+.+..++..|
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g---------~---~~~~~~~l~~la~~l 62 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG---------D---RAVTVQRLAELADFY 62 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT---------C---SCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC---------C---CCCCHHHHHHHHHHH
Confidence 45889999999999 999999876641 1 235555666666655
No 249
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.47 E-value=6.5 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.8
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+..+||...|||.+|||++++
T Consensus 4 ti~dvA~~agVS~~TVSrvln 24 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVN 24 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHc
Confidence 567899999999999999985
No 250
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.46 E-value=18 Score=27.97 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHHhhhccCCCccccccccc-cccccchhhhHHHHHH
Q 015682 107 VAIALRRLASGESQVSVGVAF-GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 107 l~i~L~~La~g~s~~~l~~~f-gvs~sTv~~~i~~v~~ 143 (402)
++..|. ..+.++.+|+..+ |++++|+++.+.+..+
T Consensus 27 IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 27 LMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 444444 3568899999999 9999999988876554
No 251
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.11 E-value=12 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcc-CCCcc--ccccccccccccchhhhHHHHH
Q 015682 104 EKQVAIALRRLA-SGESQ--VSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 104 e~~l~i~L~~La-~g~s~--~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+.++.+|+.|. .|.+. .+|+..++++++||++++.+..
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456677777774 35555 8899999999999998775544
No 252
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=31.97 E-value=7.1 Score=30.16 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+.++.+.|.-.+ +-..|.++.++|...|||++|++++.+
T Consensus 11 ~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 11 PIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456666554322 235689999999999999999998864
No 253
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.57 E-value=40 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.168 Sum_probs=22.4
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...+...|+..||+|++||.+.+.+..
T Consensus 26 ~~ls~~eLa~~lgvSr~~vr~al~~L~ 52 (163)
T 2gqq_A 26 GRISNVELSKRVGLSPTPCLERVRRLE 52 (163)
T ss_dssp SSCCTTGGGTSSSCCTTTSSSTHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346788999999999999998876653
No 254
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.41 E-value=44 Score=25.55 Aligned_cols=78 Identities=17% Similarity=0.073 Sum_probs=43.8
Q ss_pred ChhhhhcccCCCHHHHHHHHHHHhccc--cCCCCCCCccccCCcCCHHHHHHHHhhhcc--CCCccccccccc---c---
Q 015682 59 EEEGFKYFFRVSKKTFDYICSLVREDL--VSRPPSGLINIEGRLLSVEKQVAIALRRLA--SGESQVSVGVAF---G--- 128 (402)
Q Consensus 59 ~~~~F~~~fRms~~tF~~L~~~l~~~~--~~~~~~g~~~~~~~~ls~e~~l~i~L~~La--~g~s~~~l~~~f---g--- 128 (402)
+-.+.-..|++++.|+...+....... ..+...| .....++++..-.| +.++. ...+...|+..+ |
T Consensus 35 s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g---~~~~~l~~~~~~~i-~~~~~~~~~~s~~~i~~~l~~~g~~~ 110 (128)
T 1pdn_C 35 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG---SKPRIATPEIENRI-EEYKRSSPGMFSWEIREKLIREGVCD 110 (128)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSC---CCCCSSCSTHHHHH-HHTTTTCTTCCHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCC---CCCCcCCHHHHHHH-HHHHHhCcchHHHHHHHHHHHcCCcc
Confidence 445667789999999988877654321 1111111 02234665433222 23333 235677777777 6
Q ss_pred ----ccccchhhhHHH
Q 015682 129 ----VGQSTVSQVTWR 140 (402)
Q Consensus 129 ----vs~sTv~~~i~~ 140 (402)
+|.+||++++++
T Consensus 111 ~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 111 RSTAPSVSAISRLVRG 126 (128)
T ss_dssp STTCCCHHHHHHHC--
T ss_pred ccCCcCHHHHHHHHHh
Confidence 588888877653
No 255
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=31.05 E-value=17 Score=32.92 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=30.9
Q ss_pred HHHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 104 EKQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 104 e~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
-++.+-.|..|+. +.+..+|+...|+++||+++++....+
T Consensus 5 l~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 5 VSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp HHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3556666777764 367889999999999999998876554
No 256
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=31.03 E-value=8.3 Score=27.66 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.5
Q ss_pred cCCCccccccccccccccchhhhHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..|.++.++|...|||++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688999999999999999987753
No 257
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.88 E-value=13 Score=31.73 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
.++..+. -.|.+|+.|.+...|+...++|..||..++.+...-|
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3666554 3466788899999999999999999999998887766
No 258
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.88 E-value=21 Score=28.41 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=21.1
Q ss_pred CccccccccccccccchhhhHHHHHH
Q 015682 118 ESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 118 ~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+...||..+|++.+||.+++.....
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56778999999999999888766553
No 259
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.67 E-value=15 Score=29.89 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.+.+...|+..+|||++||++.+.+...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4567889999999999999988876543
No 260
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=30.63 E-value=21 Score=28.95 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=27.5
Q ss_pred CCHHH-HHHHHhhhcc----CCCccccccccccccccchhhhHHHHH
Q 015682 101 LSVEK-QVAIALRRLA----SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 101 ls~e~-~l~i~L~~La----~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++.+ .++..|.... .+.+..+|+..++++++|+++++.+..
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 45444 4444454432 236889999999999999999887654
No 261
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.58 E-value=8.7 Score=28.49 Aligned_cols=36 Identities=14% Similarity=-0.027 Sum_probs=26.7
Q ss_pred CHHHHHHHHhhhccCCCccccccccccccccchhhhHH
Q 015682 102 SVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 102 s~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
++.++|--. +-..|.++.++|...|||++|++++.+
T Consensus 8 ~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 8 RPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp CHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 444544332 234578999999999999999999875
No 262
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=30.23 E-value=33 Score=27.17 Aligned_cols=23 Identities=17% Similarity=-0.007 Sum_probs=17.6
Q ss_pred ccccccccccccccchhhhHHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
+.+.|+..||||++||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45689999999999997766543
No 263
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=30.13 E-value=20 Score=31.64 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=15.8
Q ss_pred ccccccccccccchhhhHHH
Q 015682 121 VSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 121 ~~l~~~fgvs~sTv~~~i~~ 140 (402)
+.|+..||||+++|...+..
T Consensus 32 ~~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 32 RALSETLGVSRSSLREALRV 51 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 36889999999999766544
No 264
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=30.00 E-value=14 Score=28.30 Aligned_cols=29 Identities=7% Similarity=-0.095 Sum_probs=23.2
Q ss_pred cCCCccccccccc-cccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAF-GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~f-gvs~sTv~~~i~~v~~ 143 (402)
..+.++.+|+..+ |++++|+++.+.+..+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3457899999999 5999999988866543
No 265
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.91 E-value=8.9 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=31.1
Q ss_pred hccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
+...|.++.+||...|||++|++++.+. . . |+.+.+..++..|
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G----------~--~-~s~~~l~kIa~~L 75 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKN----------E--N-VSLTVLLAICEYL 75 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT----------C--C-CCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC----------C--C-cCHHHHHHHHHHH
Confidence 3456889999999999999999877641 1 1 4555666666655
No 266
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.75 E-value=5.9 Score=29.22 Aligned_cols=26 Identities=38% Similarity=0.313 Sum_probs=22.6
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999988764
No 267
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=29.49 E-value=8.1 Score=36.34 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.8
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+..+||...|||.+|||++++
T Consensus 11 Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHC
Confidence 467899999999999999985
No 268
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=29.43 E-value=17 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHhhhcc-----CCCccccccccccccccchhhhHHHHH
Q 015682 106 QVAIALRRLA-----SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 106 ~l~i~L~~La-----~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.++..|+.++ ...++..|+...++++||+++.+.+..
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe 61 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ 61 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH
Confidence 4455566663 235788999999999999998876544
No 269
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=29.40 E-value=11 Score=31.09 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=0.0
Q ss_pred ccCCCccccccccccccccchhhhH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
...|.++.++|..+|||++|++++-
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~e 35 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp -------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3558899999999999999999983
No 270
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=29.15 E-value=12 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCccccccccccccccchhhhHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
.|.++.+||...|+|++|++++-+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5889999999999999999998775
No 271
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=29.03 E-value=8.8 Score=29.59 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=23.1
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++.+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445689999999999999999998763
No 272
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=28.71 E-value=9.9 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=24.1
Q ss_pred hhccCCCccccccccccccccchhhhHH
Q 015682 112 RRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 112 ~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
.++..|.++..|+..+|+|.+|+++++.
T Consensus 153 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 153 NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3456799999999999999999998764
No 273
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.56 E-value=22 Score=25.94 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=19.7
Q ss_pred CCccccccccccccccchhhhHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
..+..+|+..|+||.+||.+-+.+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567789999999999997766443
No 274
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=28.36 E-value=12 Score=28.77 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=22.9
Q ss_pred hhccCCC---ccccccccccccccchhhhHHHHH
Q 015682 112 RRLASGE---SQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 112 ~~La~g~---s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..|..|. +..+|+..||||++||.+.+....
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455554 567899999999999987765543
No 275
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.87 E-value=21 Score=31.21 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHhhhcc---CCCccccccccccccccchhhhHHHHH
Q 015682 105 KQVAIALRRLA---SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 105 ~~l~i~L~~La---~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+..+-+++.|. .+.+..+||..++++++||++.+.+..
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444555553 246788999999999999998775443
No 276
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=27.84 E-value=8.5 Score=29.21 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.6
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
-..|.++.++|...|||++|++++.+
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34588999999999999999998864
No 277
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=27.62 E-value=20 Score=31.58 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCccccccccccccccchhhhHHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
+.++..+|..+++|++|+|+.+.+..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456899999999999999999988776
No 278
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=27.22 E-value=13 Score=30.38 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=23.6
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||+++++++.+
T Consensus 77 R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456789999999999999999998764
No 279
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=27.21 E-value=20 Score=31.41 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHhhhc--cCCCccccccccccccccchhhhHHH
Q 015682 107 VAIALRRL--ASGESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 107 l~i~L~~L--a~g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
+.-.|..+ ..|.++.++|..+|+|++|++++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 44455544 45779999999999999999998753
No 280
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=26.85 E-value=44 Score=26.15 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHH
Q 015682 68 RVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 68 Rms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
.|+.+.|.-|+++-. |..++-++..=-||-.|.+-..++..+||++|-.++.+.+.
T Consensus 29 ~vsee~F~LLlelS~------------------IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 29 SMSEEQFFLLIGISS------------------IHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp CSCHHHHHHHHHHSC------------------CCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC------------------CCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 477788888877521 22234444444589999999999999999999999887643
No 281
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.84 E-value=11 Score=28.64 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred ccCCCccccccccccccccchhhhHH
Q 015682 114 LASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 114 La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
...|.++.++|...||+++|++++-+
T Consensus 38 ~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34688899999999999999988753
No 282
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=26.81 E-value=11 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.038 Sum_probs=22.3
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++.+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999987653
No 283
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=26.68 E-value=16 Score=31.70 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.9
Q ss_pred hhccCCCccccccccccccccchhhhHH
Q 015682 112 RRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 112 ~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
..+..|.+...|+..+|+|.+|+++++.
T Consensus 170 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 170 EMLEEGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3445799999999999999999988764
No 284
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.61 E-value=26 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCH-HHHHHHHhhhccCCCcccccccccc----ccccchhhhHHHHHH
Q 015682 101 LSV-EKQVAIALRRLASGESQVSVGVAFG----VGQSTVSQVTWRFIE 143 (402)
Q Consensus 101 ls~-e~~l~i~L~~La~g~s~~~l~~~fg----vs~sTv~~~i~~v~~ 143 (402)
+++ +..++.+||. ..+.+..+|+..++ ++.+||+.++.+...
T Consensus 8 Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 8 ISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 554 4467777776 45789999999997 588999888766543
No 285
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.42 E-value=33 Score=28.31 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCccccccccccccccchhhhHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
..++.+||..+|+|.+||.+.+.+..
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKME 42 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999988776654
No 286
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=26.40 E-value=15 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
.++..+. -.|.+|+.|.+...|+..+++|..||..++.+...-|
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3666553 3456788999999999999999999999888766544
No 287
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.31 E-value=29 Score=29.50 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=21.4
Q ss_pred CCccccccccccccccchhhhHHHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+..+|+..||||++||.+-+....
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36788999999999999988776443
No 288
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.08 E-value=21 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=18.3
Q ss_pred ccccccccccccccchhhhHHHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+.+.|+..||||++||.+.+....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445788999999999977665443
No 289
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=26.03 E-value=26 Score=31.95 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHhhhccC---CCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQVAIALRRLAS---GESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~---g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.++.-++.+-.|..|+. +.+..+|+...|+++||+++++.....
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35555666666666653 467889999999999999998876554
No 290
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=25.83 E-value=35 Score=28.66 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=11.5
Q ss_pred CCHHHHHHHHhhhccCCCccccccccc
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAF 127 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~f 127 (402)
|+.++ |..+|..|....+...+...+
T Consensus 74 i~~~e-l~~~l~~lg~~~~~~~~~~l~ 99 (196)
T 3dtp_E 74 ISKND-IRATFDSLGRLCTEQELDSMV 99 (196)
T ss_dssp CCHHH-HHHHHHTTSCCCCHHHHHHHH
T ss_pred CCHHH-HHHHHHHhCCCCCHHHHHHHH
Confidence 44433 444455554444444444443
No 291
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.66 E-value=15 Score=27.81 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=17.1
Q ss_pred ccccccccccccccchhhhHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+.++|+..||||++||++.+.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456899999999999976553
No 292
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=25.58 E-value=11 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred hccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
+-..|.++..+|...|||++|++++.+. -..-|+.+.+..++..|
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~g-----------~~~~p~~~~l~~ia~~l 54 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIERN-----------LQTNPSIQFLEKVSAVL 54 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT-----------CCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999887642 01235555566666655
No 293
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.43 E-value=12 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=31.0
Q ss_pred hccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
+...|.++.++|...|||++|++++-+. -.-|+.+.+..++..|
T Consensus 18 r~~~glsq~~lA~~~gis~~~i~~~e~g------------~~~p~~~~l~~la~~l 61 (114)
T 3op9_A 18 KKEHGLKNHQIAELLNVQTRTVAYYMSG------------ETKPDIEKLIRLATYF 61 (114)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHHT------------SSCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCHHHHHHHHHHh
Confidence 3456889999999999999999887541 1235555555665555
No 294
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=24.94 E-value=24 Score=30.43 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=25.9
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++-.|. ..+.+..+|+..+|+|++||++.+.+..
T Consensus 24 ~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le 58 (192)
T 1uly_A 24 KILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLK 58 (192)
T ss_dssp HHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4444443 3467889999999999999988776543
No 295
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.70 E-value=13 Score=28.85 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhc--cCCCccccccccccccccchhhhH
Q 015682 103 VEKQVAIALRRL--ASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 103 ~e~~l~i~L~~L--a~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
....++-.|+.+ ..|.++.++|...|||++|++++-
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 344555555444 468899999999999999998774
No 296
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.67 E-value=28 Score=26.89 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=24.9
Q ss_pred hhhccCC-Cc--cccccccc-cccccchhhhHHHHHH
Q 015682 111 LRRLASG-ES--QVSVGVAF-GVGQSTVSQVTWRFIE 143 (402)
Q Consensus 111 L~~La~g-~s--~~~l~~~f-gvs~sTv~~~i~~v~~ 143 (402)
|+.|..| .+ +.+|+..+ |||++|+++.+.+..+
T Consensus 33 L~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 33 ISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp HHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3444454 45 89999999 9999999988876554
No 297
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=24.60 E-value=18 Score=30.49 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=33.4
Q ss_pred CCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHHHH
Q 015682 101 LSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIEAL 145 (402)
Q Consensus 101 ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al 145 (402)
++..++- .|.+++.|.+...++..+++|..||..++.+...-+
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5554433 345578899999999999999999998887776655
No 298
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.53 E-value=16 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.6
Q ss_pred cCCCccccccccccccccchhhhH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
..|.++.++|...|||++|++++-
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 457889999999999999998764
No 299
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.46 E-value=1e+02 Score=24.50 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=44.6
Q ss_pred ChhhhhcccCCCHHHHHHHHHHHhccc--cCCCCCCCccccCCcCCHHHHHHHHhhhcc--CCCccccccccc-------
Q 015682 59 EEEGFKYFFRVSKKTFDYICSLVREDL--VSRPPSGLINIEGRLLSVEKQVAIALRRLA--SGESQVSVGVAF------- 127 (402)
Q Consensus 59 ~~~~F~~~fRms~~tF~~L~~~l~~~~--~~~~~~g~~~~~~~~ls~e~~l~i~L~~La--~g~s~~~l~~~f------- 127 (402)
+-.+--..|++++.|+...+....... ..+...| .....++.+..-.| +.++. ...+...|+..+
T Consensus 50 s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~g---r~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~ 125 (149)
T 1k78_A 50 RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGG---SKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCD 125 (149)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCC---CCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCC---CCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccc
Confidence 455666788999999988877654322 1211111 11335676543333 22332 235666676665
Q ss_pred -c--ccccchhhhHHH
Q 015682 128 -G--VGQSTVSQVTWR 140 (402)
Q Consensus 128 -g--vs~sTv~~~i~~ 140 (402)
| +|.+||++++.+
T Consensus 126 ~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 126 NDTVPSVSSINRIIRT 141 (149)
T ss_dssp TTTSCCHHHHHHHHHC
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5 788888887764
No 300
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.33 E-value=15 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.1
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++-+
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 445689999999999999999998764
No 301
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=23.84 E-value=14 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=22.7
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.++|...|||++|++++.+
T Consensus 49 R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 49 IDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999987763
No 302
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.74 E-value=32 Score=30.65 Aligned_cols=27 Identities=7% Similarity=-0.117 Sum_probs=22.6
Q ss_pred CCCccccccccccccccchhhhHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
...+...|+..+|+|++||++.+....
T Consensus 24 g~~s~~ELa~~lglS~stVs~hL~~Le 50 (232)
T 2qlz_A 24 MECYFSLLSSKVSVSSTAVAKHLKIME 50 (232)
T ss_dssp TTTCSSSSCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888999999999999998876544
No 303
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.47 E-value=17 Score=28.89 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.2
Q ss_pred cccccccccccccchhhhHHHHH
Q 015682 120 QVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 120 ~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
.+.|+..||||++||.+.+....
T Consensus 40 ~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 40 VREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 45788999999999987765544
No 304
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=23.19 E-value=14 Score=28.31 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.1
Q ss_pred HHHHHHHhhhccCCCcccccccccc----ccccchhhhHHHHH
Q 015682 104 EKQVAIALRRLASGESQVSVGVAFG----VGQSTVSQVTWRFI 142 (402)
Q Consensus 104 e~~l~i~L~~La~g~s~~~l~~~fg----vs~sTv~~~i~~v~ 142 (402)
+..++.+|+. ..+.+..+|+..++ ++.+||.+++.+..
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 4567778876 44788999999887 46788887776554
No 305
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=22.84 E-value=14 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=17.3
Q ss_pred cccccccccccccchhhhHHH
Q 015682 120 QVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 120 ~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..+++..+|||++|+.+.+.+
T Consensus 13 ~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 346778899999999998875
No 306
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.78 E-value=32 Score=24.75 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.7
Q ss_pred EeeeeCCCceEEeeec
Q 015682 210 VQGIVDHEMRFIDIVT 225 (402)
Q Consensus 210 ~q~vvD~~~rf~~v~~ 225 (402)
+.+|+|..|+|+|++-
T Consensus 51 ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 51 LTGVIDDRGKFIYITP 66 (72)
T ss_dssp SCEEECTTCCEEECCC
T ss_pred eEEEEeCCCCEEEecH
Confidence 5689999999999864
No 307
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.47 E-value=17 Score=28.54 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=31.5
Q ss_pred hccCCCccccccccccccccchhhhHHHHHHHHHHhhcccccCCCchhHHHHHHHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTWRFIEALEERAKHHLKWPDSNRMEEIKSKF 168 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~al~~~~~~~i~~P~~~~~~~i~~~f 168 (402)
+...|.++..+|...|||++|++++-+- -.-|+.+.+..++..|
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~g------------~~~p~~~~l~~ia~~l 64 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIENK------------GQHPSLQVLYDLVSLL 64 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHS------------CCCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCC------------CCCCCHHHHHHHHHHH
Confidence 4456899999999999999999887541 1235555566666655
No 308
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.43 E-value=48 Score=24.74 Aligned_cols=73 Identities=7% Similarity=-0.085 Sum_probs=47.7
Q ss_pred CCChhhhhcccCCCHHHHHHHHHHHhccccCCCCCCCccccCCcCCHHHHHHHHhhhccC-CCccccccccccc-cccch
Q 015682 57 SDEEEGFKYFFRVSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIALRRLAS-GESQVSVGVAFGV-GQSTV 134 (402)
Q Consensus 57 ~~~~~~F~~~fRms~~tF~~L~~~l~~~~~~~~~~g~~~~~~~~ls~e~~l~i~L~~La~-g~s~~~l~~~fgv-s~sTv 134 (402)
..+-++.-..++||+.+|..++...-..... ..=-..++..+...|.. +.+..+||...|- +.+..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~------------~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F 86 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQ------------DYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYF 86 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHH------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHH
Confidence 4466788899999999999988765211000 11124556666666654 6788889998887 45666
Q ss_pred hhhHHHH
Q 015682 135 SQVTWRF 141 (402)
Q Consensus 135 ~~~i~~v 141 (402)
++.+.+.
T Consensus 87 ~r~Fk~~ 93 (103)
T 3lsg_A 87 ITKFKKY 93 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 309
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=22.20 E-value=18 Score=29.18 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCCccccccccccccccchhhhHHHHHH
Q 015682 116 SGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 116 ~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.|.+...||..||+|..+|.+|+.+.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999987654
No 310
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=22.17 E-value=63 Score=27.72 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=25.1
Q ss_pred ccccceeEEEEecCCCCCCCccccCCCceeeeEeeeeCC
Q 015682 178 CGAIDATHIIMTLPAVQTSDDWCDQENNYSMLVQGIVDH 216 (402)
Q Consensus 178 iGaIDgthI~i~~P~~~~~~~y~~~k~~~s~~~q~vvD~ 216 (402)
.||+|....|+. .+|++++..+.++|++
T Consensus 38 aGAlDV~~tPi~-----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV-----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE-----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece-----------EeCCCceEEEEEEECC
Confidence 589999999984 5799999999999997
No 311
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=22.16 E-value=13 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=23.9
Q ss_pred hhhccCCCccccccccccccccchhhhH
Q 015682 111 LRRLASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 111 L~~La~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
-++...|.++..+|...|||++|++++-
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~yE 124 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYYR 124 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 3457789999999999999999998764
No 312
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.92 E-value=23 Score=26.46 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=19.2
Q ss_pred CCccccccccccccccchhhhHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..+..+|+..|+||.+||.+.+.+
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 356778999999999999766643
No 313
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=21.90 E-value=19 Score=34.01 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHhhhccCCCccccccccccccccchhhhHHHHH
Q 015682 106 QVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFI 142 (402)
Q Consensus 106 ~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~ 142 (402)
+++..|++ ..+.+..+|+..|++|++||++.+.+..
T Consensus 24 ~iL~~l~~-~~~~t~~eLa~~l~vs~~Tv~r~l~~Le 59 (345)
T 2o0m_A 24 QILRNIYW-MQPIGRRSLSETMGITERVLRTETDVLK 59 (345)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444544 4689999999999999999999886543
No 314
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=21.86 E-value=14 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.3
Q ss_pred CHHHHHHHHhhhc--cCCCccccccccccccccchhhhH
Q 015682 102 SVEKQVAIALRRL--ASGESQVSVGVAFGVGQSTVSQVT 138 (402)
Q Consensus 102 s~e~~l~i~L~~L--a~g~s~~~l~~~fgvs~sTv~~~i 138 (402)
.....++-.|..+ ..|.++.++|...|||++|++++-
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3445566555544 568999999999999999998875
No 315
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.71 E-value=35 Score=29.13 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=19.2
Q ss_pred CCccccccccccccccchhhhHHH
Q 015682 117 GESQVSVGVAFGVGQSTVSQVTWR 140 (402)
Q Consensus 117 g~s~~~l~~~fgvs~sTv~~~i~~ 140 (402)
..+.++|+..||++.+||++.+..
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHH
Confidence 368899999999999987665543
No 316
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.68 E-value=18 Score=28.19 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=23.1
Q ss_pred hccCCCccccccccccccccchhhhHH
Q 015682 113 RLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 113 ~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
+...|.++.+||...|||++++++|-+
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 446689999999999999999998754
No 317
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=21.07 E-value=13 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.013 Sum_probs=25.7
Q ss_pred HHhhhccCCCccccccccccccccchhhhHH
Q 015682 109 IALRRLASGESQVSVGVAFGVGQSTVSQVTW 139 (402)
Q Consensus 109 i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~ 139 (402)
|.-+....|.++..|+...|||+|+||++.+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 3334556799999999999999999999875
No 318
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.93 E-value=20 Score=28.49 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=18.2
Q ss_pred ccccccccccccccchhhhHHHH
Q 015682 119 SQVSVGVAFGVGQSTVSQVTWRF 141 (402)
Q Consensus 119 s~~~l~~~fgvs~sTv~~~i~~v 141 (402)
+.+.|+..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 44678899999999998776554
No 319
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=20.41 E-value=43 Score=32.02 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=25.3
Q ss_pred cCCCccccccccccccccchhhhHHHHHH
Q 015682 115 ASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 115 a~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
....+-.+|+..+|+|++||++++.+.++
T Consensus 28 ~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 28 LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44578889999999999999999988876
No 320
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=20.22 E-value=25 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHhhhccCCCccccccccccccccchhhhHHHHHH
Q 015682 100 LLSVEKQVAIALRRLASGESQVSVGVAFGVGQSTVSQVTWRFIE 143 (402)
Q Consensus 100 ~ls~e~~l~i~L~~La~g~s~~~l~~~fgvs~sTv~~~i~~v~~ 143 (402)
.++..+.- .|.+|+.|.+...|+..+++|..||..++.+...
T Consensus 159 ~Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 159 KLTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36665543 3455788999999999999999999888876653
Done!